Citrus Sinensis ID: 047123

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MHSPPPPPPSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
mhsppppppsptqaaendavaplqpLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSslssisdsphwsenpllhtlLPSLLSTLQRLKALsdqctlssftggkllmqSDLDIANTSLSNHLHDLDLLLRsgvlhqsnaivlsqpgpgshkqDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSandesrkivfeegglgpllriletgsmplkekaAIGVEaittdpenawaISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSllgnlsisdgnKRAVASCMGSLIklmecpkpvglqeAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLdpknealnkkFPVMVTAAVlgggsngcRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE
Flexible Loop (DISEMBL)
mhspppppPSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVlsqpgpgshKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKivfeegglgpllRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLslltvrsnrkelvrdeksVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKlaetevpgaKKVLqrlagnrlknifsrtwre
Low Complexity Region (SEG)
MHsppppppspTQAAENDAVAPLQPlldlitnilsllllssltVRSFVGRWQILRTKlvslqsslssisdsphwsENpllhtllpsllstlQRLKALSDQCTLSSFTGGKLLMQSDLDIANTslsnhlhdldlllRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFkkkalesllqllkdddksaaVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENallaisslslsdsaarilssTTSFIIQLGEFIKRgnvllqqvsssllgnlsISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE
Disordered region (IsUnstruct)
********************APLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQ***********WSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQ*****HKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRS************************ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIF******
Disordered Region (DISOPRED)
**************************LDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAI************D*VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDG**R**ASCMGSLIKLMEC*****LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK***LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAET*****KKVLQRLAGNRLKNIFSRTW**
Disordered Region (DISEMBL)
***************ENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSL************WSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE
Disordered Region (DISPRO)
*******************VAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHSPPPPPPSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
O22193	826	U-box domain-containing p	no	no	0.398	0.279	0.238	3e-11
Q2U5T5	578	Vacuolar protein 8 OS=Asp	yes	no	0.267	0.268	0.275	1e-08
Q9ZV31	654	U-box domain-containing p	no	no	0.303	0.269	0.25	1e-08
Q5XEZ8	707	U-box domain-containing p	no	no	0.340	0.278	0.274	1e-08
Q4WVW4	578	Vacuolar protein 8 OS=Neo	yes	no	0.267	0.268	0.275	2e-08
Q757R0	568	Vacuolar protein 8 OS=Ash	yes	no	0.618	0.630	0.239	5e-08
O22161	930	Protein ARABIDILLO 1 OS=A	no	no	0.345	0.215	0.287	6e-08
P39968	578	Vacuolar protein 8 OS=Sac	yes	no	0.443	0.444	0.25	3e-07
P0CM60	630	Vacuolar protein 8 OS=Cry	yes	no	0.260	0.239	0.366	6e-07
P0CM61	630	Vacuolar protein 8 OS=Cry	N/A	no	0.260	0.239	0.366	6e-07

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 42/273 (15%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIRE 223
           ++ +   L+   ++ +++A   L  L K +  +  V+   G +  L+ LL +   S+ +E
Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELL-YSTDSATQE 601

Query: 224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA 283
            AV AL + +S ND ++K + + G + PL+ +LE GS   KE +A  + +++   EN   
Sbjct: 602 NAVTAL-LNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIK 660

Query: 284 ISAYGGVSVLIEAFRSGTALTQSHAV-------------------GAIR----------- 313
           I   G +  L++   +GT   +  A                    GA+R           
Sbjct: 661 IGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAG 720

Query: 314 ----------NIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
                     N+A + + + A+ +EG +P+LV+ +   S   +ENAA  +  L+ +   F
Sbjct: 721 MVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRF 780

Query: 364 RLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396
             +++QE  +  L+ L Q  T        ALL+
Sbjct: 781 CNMVLQEGAVPPLVALSQSGTPRAREKAQALLS 813

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 233 VSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSV 292
           ++ N +++ ++   GGL PL+R + + ++ ++  A   +  + T  +N   I+  G +  
Sbjct: 133 LAVNADNKVLIVALGGLAPLIRQMMSPNVEVQCNAVGCITNLATHEDNKAKIARSGALGP 192

Query: 293 LIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
           LI   +S     Q +A GA+ N+   +D +  L   GA+PVLVQ L+SS    Q      
Sbjct: 193 LIRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSSDVDVQYYCTTA 252

Query: 353 IATLAA-SGEYFRLLIIQERGLQRLMHLIQDSTSSI 387
           ++ +A  +    RL   + R +Q L+HL+  ST  +
Sbjct: 253 LSNIAVDASNRKRLAQTESRLVQSLVHLMDSSTPKV 288

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIRE 223
           I ++  +L     E ++ A   +  L K ++ +   +A  G +  L++LL   + S  +E
Sbjct: 357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQE 416

Query: 224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA 283
            AV ++  +    +   KIV+  G +  ++ +L+ GSM  +E AA  + +++   EN   
Sbjct: 417 HAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVT 476

Query: 284 ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339
           I A G +  L+     G+   +  A  A+ N+   +  K      G VPVL++ LT
Sbjct: 477 IGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLT 532

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 11/208 (5%)

Query: 182 ALESLLQL-LKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQA---VLALSIIVSAND 237
           A+  LL L + D++KS  ++A+ G +  LI +L   +    +  +   + +LS+I    +
Sbjct: 483 AVTCLLNLSINDNNKS--LIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVI----E 536

Query: 238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF 297
           E +  + E G + PL+ +L +GS+  K+ AA  +  ++   EN   +   G V  L+E  
Sbjct: 537 EYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596

Query: 298 RSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357
                + +  AV  + N+A V + K A+ EEG +PVLV+ +   S   +ENA   +  L 
Sbjct: 597 DPAFGMVEK-AVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLC 655

Query: 358 ASGEYFRLLIIQERGLQRLMHLIQDSTS 385
                F   +I+E  +  L+ L +  T+
Sbjct: 656 THSPKFCNNVIREGVIPPLVALTKSGTA 683

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 233 VSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSV 292
           ++ N E++ ++   GGL PL+R + + ++ ++  A   +  + T  +N   I+  G +  
Sbjct: 133 LAVNAENKVLIVALGGLTPLIRQMMSPNVEVQCNAVGCITNLATHEDNKAKIARSGALGP 192

Query: 293 LIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
           LI   +S     Q +A GA+ N+   +D +  L   GA+PVLVQ L+S     Q      
Sbjct: 193 LIRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSPDVDVQYYCTTA 252

Query: 353 IATLAA-SGEYFRLLIIQERGLQRLMHLIQDSTSSI 387
           ++ +A  +    RL   + R +Q L+HL+  ST  +
Sbjct: 253 LSNIAVDASNRKRLAQTESRLVQSLVHLMDSSTPKV 288

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q757R0|VAC8_ASHGO Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VAC8 PE=3 SV=3

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 174/380 (45%), Gaps = 22/380 (5%)

Query: 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
           E +++A+ SLL  L+D D         G +  L +L+ +    +++  A LA + I    
Sbjct: 22  ENEREAVTSLLGYLEDKDNYDFYSG--GPLKALTTLV-YSDNLNLQRSAALAFAEI---- 74

Query: 237 DESRKIV--FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLI 294
             + K V   +   L P+L +L++    ++  A   +  +  + EN   I   GG+  LI
Sbjct: 75  --TEKYVRPVDREVLEPILILLQSHDPQIQIAACAALGNLAVNNENKILIVEMGGLEPLI 132

Query: 295 EAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIA 354
           E  +S     Q +AVG I N+A  +D KA +A  GA+  L +   S +   Q NA   + 
Sbjct: 133 EQMKSNNVEVQCNAVGCITNLATQDDNKAKIAHSGALVPLTKLAKSKNIRVQRNATGALL 192

Query: 355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTT 414
            +  SGE  R  ++    +  L+ L+  S + +        A+S++++ +S  R LS T 
Sbjct: 193 NMTHSGEN-RKELVDAGAVPVLVSLLSSSDADVQYY--CTTALSNIAVDESNRRKLSQTE 249

Query: 415 SFII-QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV--ASCMGSLIKLMECPK-PVG 470
             ++ +L       +  ++  ++  L NL+   G +  +  A  +  L+KL++C   P+ 
Sbjct: 250 PRLVSKLVVLTDSPSARVKCQATLALRNLASDTGYQLEIVRAGGLSHLVKLIQCNSMPLV 309

Query: 471 LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530
           L   A+ A +  +++    + L+ D   +  L+++LD  N+    +   + T   L   S
Sbjct: 310 L---ASVACIRNISIHPLNEGLIVDAGFLKPLVKLLD-YNDNEEIQCHAVSTLRNLAASS 365

Query: 531 NGCRKRLVAAGAYQHLQKLA 550
              R+    +GA +  ++LA
Sbjct: 366 EKNRQEFFESGAVEKCKQLA 385

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 193 DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIV---SANDESRKIVFEEGGL 249
           DDK +  VAK G V  L+ L        ++EQA  AL+ +     +N+ +  +  E G L
Sbjct: 553 DDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGAL 612

Query: 250 GPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALT---QS 306
             L+++ ++    ++++AA  +  ++ D +N  +IS  GGV  L+   +S +  +   Q 
Sbjct: 613 EALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQE 672

Query: 307 HAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS-GEYFRL 365
            A GA+  ++  E    A+  EG VP L+    S +    E AA  +  LA + G   R 
Sbjct: 673 RAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALR- 731

Query: 366 LIIQERGLQRLMHLIQDSTSSIVTVENAL 394
            I++E G+  L+HL   S S +     AL
Sbjct: 732 -IVEEGGVPALVHLCSSSVSKMARFMAAL 759

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 129/264 (48%), Gaps = 7/264 (2%)

Query: 233 VSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSV 292
           ++ N+E++ ++ E GGL PL+  +   ++ ++  A   +  + T  +N   I+  G +  
Sbjct: 112 LAVNNENKLLIVEMGGLEPLINQMMGDNVEVQCNAVGCITNLATRDDNKHKIATSGALIP 171

Query: 293 LIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
           L +  +S     Q +A GA+ N+   E+ +  L   GAVPVLV  L+S+    Q      
Sbjct: 172 LTKLAKSKHIRVQRNATGALLNMTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTA 231

Query: 353 IATLAAS-GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILS 411
           ++ +A       +L   + R + +L+ L+ DS SS V  + A LA+ +L+ SD++ ++  
Sbjct: 232 LSNIAVDEANRKKLAQTEPRLVSKLVSLM-DSPSSRVKCQ-ATLALRNLA-SDTSYQLEI 288

Query: 412 STTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV--ASCMGSLIKLMECPKPV 469
                +  L + I+  ++ L   S + + N+SI   N+  +  A  +  L++L++     
Sbjct: 289 VRAGGLPHLVKLIQSDSIPLVLASVACIRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSE 348

Query: 470 GLQEAATDAVLSL-LTVRSNRKEL 492
            +Q  A   + +L  +   NRKE 
Sbjct: 349 EIQCHAVSTLRNLAASSEKNRKEF 372

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 206 VGYLISLLDFHHQS-SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLK 264
           V  L+ L+D   QS  ++ QA LAL  + S +    +IV + GGL PLLR+L +  +PL 
Sbjct: 254 VQSLVQLMD--SQSLKVQCQAALALRNLASDSKYQLEIV-KFGGLKPLLRLLHSSYLPLI 310

Query: 265 EKAAIGVEAITTDPENAWAISAYGGVSVLIE--AFRSGTALTQSHAVGAIRNIAAV-EDI 321
             AA  V  ++  P N   I   G +  LIE  +F     + Q HA+  +RN+AA  E  
Sbjct: 311 LSAAACVRNVSIHPANESPIIESGFLQPLIELLSFDENEEV-QCHAISTLRNLAASSEKN 369

Query: 322 KAALAEEGAVPVLVQSLTSSSNLA-QENAADCIATLAASGE 361
           K A+ E GAV   ++SL  +  LA Q     C+A LA S +
Sbjct: 370 KGAIVEAGAVEK-IKSLVLTVPLAVQSEMTACVAVLALSDD 409

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 206 VGYLISLLDFHHQS-SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLK 264
           V  L+ L+D   QS  ++ QA LAL  + S +    +IV + GGL PLLR+L +  +PL 
Sbjct: 254 VQSLVQLMD--SQSLKVQCQAALALRNLASDSKYQLEIV-KFGGLKPLLRLLHSSYLPLI 310

Query: 265 EKAAIGVEAITTDPENAWAISAYGGVSVLIE--AFRSGTALTQSHAVGAIRNIAAV-EDI 321
             AA  V  ++  P N   I   G +  LIE  +F     + Q HA+  +RN+AA  E  
Sbjct: 311 LSAAACVRNVSIHPANESPIIESGFLQPLIELLSFDENEEV-QCHAISTLRNLAASSEKN 369

Query: 322 KAALAEEGAVPVLVQSLTSSSNLA-QENAADCIATLAASGE 361
           K A+ E GAV   ++SL  +  LA Q     C+A LA S +
Sbjct: 370 KGAIVEAGAVEK-IKSLVLTVPLAVQSEMTACVAVLALSDD 409

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
225447141	569	PREDICTED: vacuolar protein 8 [Vitis vin	0.982	1.0	0.704	0.0
449481143	574	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.958	0.966	0.708	0.0
449444721	574	PREDICTED: vacuolar protein 8-like [Cucu	0.958	0.966	0.708	0.0
224131684	566	predicted protein [Populus trichocarpa]	0.962	0.984	0.733	0.0
224064884	573	predicted protein [Populus trichocarpa]	0.963	0.973	0.711	0.0
255568731	573	ubiquitin-protein ligase, putative [Rici	0.981	0.991	0.684	0.0
297835838	578	armadillo/beta-catenin repeat family pro	0.963	0.965	0.677	0.0
332083029	570	armadillo repeat-containing protein [Gos	0.981	0.996	0.668	0.0
15224987	580	armadillo/beta-catenin-like repeats-cont	0.965	0.963	0.677	0.0
115478092	583	Os09g0135800 [Oryza sativa Japonica Grou	0.918	0.912	0.470	1e-115

>gi|225447141|ref|XP_002271314.1| PREDICTED: vacuolar protein 8 [Vitis vinifera]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/579 (70%), Positives = 477/579 (82%), Gaps = 10/579 (1%)

Query: 1   MHSPPPPPPSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVS 60
           MH P   P SP+  +        +P L++IT +LS LLLSSL+V+SF+GRWQ+LR+KL S
Sbjct: 1   MH-PSAGPASPSSTS--------KPTLEVITQLLSFLLLSSLSVKSFIGRWQVLRSKLSS 51

Query: 61  LQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIA 120
           LQSS+  ISDSPHWSENPL  TL+PSL+STLQRLK+LSDQC  S++ GGKLLMQSDLD+A
Sbjct: 52  LQSSIVEISDSPHWSENPLFQTLIPSLVSTLQRLKSLSDQCADSAYAGGKLLMQSDLDMA 111

Query: 121 NTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKK 180
           + SLS  LHDLDLLLRSGVL QSNAIVLSQPGPGS K+DL  F+RD+FTRLQIGG+EFKK
Sbjct: 112 SASLSKQLHDLDLLLRSGVLRQSNAIVLSQPGPGSAKEDLGFFVRDLFTRLQIGGIEFKK 171

Query: 181 KALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240
           KALESLLQLL DD+K+   VAKEGN+ YL+ LLD ++   IREQAV A+S++ SA+D+S 
Sbjct: 172 KALESLLQLLADDEKAPVTVAKEGNIAYLVHLLDMNNHPCIREQAVTAISVLASASDQSI 231

Query: 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG 300
           K VFEEGGLGPLLRILETGS+ LKEKAAI VEAIT DPENAWA+SAYGGVS+LIEA RS 
Sbjct: 232 KCVFEEGGLGPLLRILETGSVTLKEKAAIAVEAITADPENAWAVSAYGGVSILIEACRSA 291

Query: 301 TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360
           T+ TQ+HAVGA+RN+A VEDI+ +L EEGAVP+LVQ L S S  AQE AA+CIA LA+SG
Sbjct: 292 TSSTQTHAVGALRNVAVVEDIRNSLGEEGAVPILVQLLASGSGPAQEKAANCIAILASSG 351

Query: 361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQL 420
           EYFR LIIQERGL RLM L+ DS+SS   +E+ L  + SLS SDS +R LSS+T+FIIQL
Sbjct: 352 EYFRALIIQERGLLRLMQLLHDSSSS-EALEHVLRTLISLSASDSISRSLSSSTAFIIQL 410

Query: 421 GEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL 480
            E IK GN++LQ  ++SLL +LSISDGNKRA+ASC+ SL+KLME  KPVGLQE A  A++
Sbjct: 411 SELIKHGNIILQHSAASLLAHLSISDGNKRAIASCLASLVKLMESSKPVGLQEVAAQALV 470

Query: 481 SLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAA 540
           SLL VRSNRKELVRDEKSVMRLMQMLDPK+E + KKF V V AA L GGS GCRKRLVAA
Sbjct: 471 SLLAVRSNRKELVRDEKSVMRLMQMLDPKSELVCKKFLVAVVAATLAGGSQGCRKRLVAA 530

Query: 541 GAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE 579
           GAY  LQ+LAETEVPGA+K LQRL GNRLK+IFSRTWRE
Sbjct: 531 GAYPLLQRLAETEVPGARKALQRLVGNRLKSIFSRTWRE 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481143|ref|XP_004156094.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein 8-like [Cucumis sativus]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/556 (70%), Positives = 467/556 (83%), Gaps = 1/556 (0%)

Query: 24  QPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTL 83
           Q LLDLI  I+S LLLSSL+VRSFVGRWQ+L +KL  L S+L  I DS HWSENPL+HT+
Sbjct: 20  QALLDLIIQIVSFLLLSSLSVRSFVGRWQVLHSKLSILHSALIEILDSSHWSENPLVHTI 79

Query: 84  LPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQS 143
           LPSLLSTLQRLK+LSDQC+  +F+GGKL MQSDLD+A+ SLS+ L+DLDLLLRSGVL+QS
Sbjct: 80  LPSLLSTLQRLKSLSDQCSDPAFSGGKLHMQSDLDMASASLSSQLNDLDLLLRSGVLYQS 139

Query: 144 NAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKE 203
           NA+VLSQP PGS+K D   FIRD+FTRLQIGG+EFKKKALESL+QLL  D+KSA +VAKE
Sbjct: 140 NALVLSQPVPGSNKDDTEFFIRDLFTRLQIGGMEFKKKALESLVQLLNQDEKSAGLVAKE 199

Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPL 263
           GNVGYL+ LLDF+ Q S+RE A  A+S++ +A+DESRK VFEEGGLGPLLRILETGSM L
Sbjct: 200 GNVGYLVHLLDFNAQPSVRELATSAISVLSTASDESRKXVFEEGGLGPLLRILETGSMHL 259

Query: 264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKA 323
           KEKAA  VEAIT D ENAWA+SAYGG+SVLI+A RSGT   Q+ AVGAIRN+ AVEDIKA
Sbjct: 260 KEKAAAAVEAITIDSENAWAVSAYGGISVLIDACRSGTPSLQTSAVGAIRNVTAVEDIKA 319

Query: 324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383
           +L EEG +PVL+Q L SS+  +QE AA   A LA+SGEYFR LIIQERGLQRL+HLI DS
Sbjct: 320 SLVEEGVIPVLLQLLVSSTTASQEKAAMSTAVLASSGEYFRTLIIQERGLQRLLHLIHDS 379

Query: 384 TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443
            SS  T+E+AL A+SSL++SDS ARILSS+T F+++LGE +K GN++LQQ+++SL+ NLS
Sbjct: 380 ASSD-TIESALRALSSLAVSDSVARILSSSTLFVMKLGELVKHGNLVLQQIAASLVSNLS 438

Query: 444 ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLM 503
           ISDGNKRA+ SCMGSL+KLME PKP G+QE A  A+ SLLTVRSNRKEL++DEKSVMRLM
Sbjct: 439 ISDGNKRAIGSCMGSLVKLMEMPKPAGVQEVAVRALASLLTVRSNRKELMKDEKSVMRLM 498

Query: 504 QMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQR 563
           QMLDPKNE + K FP+ +  AVL GGS GCRKRL+ AGAYQHLQ L +  V GAKK LQR
Sbjct: 499 QMLDPKNEVVGKSFPLAIVTAVLAGGSKGCRKRLLDAGAYQHLQNLTDMNVAGAKKALQR 558

Query: 564 LAGNRLKNIFSRTWRE 579
           L GNRL++IF+RTWRE
Sbjct: 559 LNGNRLRSIFNRTWRE 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444721|ref|XP_004140122.1| PREDICTED: vacuolar protein 8-like [Cucumis sativus]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/556 (70%), Positives = 467/556 (83%), Gaps = 1/556 (0%)

Query: 24  QPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTL 83
           Q LLDLI  I+S LLLSSL+VRSFVGRWQ+L +KL  L S+L  I DS HWSENPL+HT+
Sbjct: 20  QALLDLIIQIVSFLLLSSLSVRSFVGRWQVLHSKLSILHSALIEILDSSHWSENPLVHTI 79

Query: 84  LPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQS 143
           LPSLLSTLQRLK+LSDQC+  +F+GGKL MQSDLD+A+ SLS+ L+DLDLLLRSGVL+QS
Sbjct: 80  LPSLLSTLQRLKSLSDQCSDPAFSGGKLHMQSDLDMASASLSSQLNDLDLLLRSGVLYQS 139

Query: 144 NAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKE 203
           NA+VLSQP PGS+K D   FIRD+FTRLQIGG+EFKKKALESL+QLL  D+KSA +VAKE
Sbjct: 140 NALVLSQPVPGSNKDDTEFFIRDLFTRLQIGGMEFKKKALESLVQLLNQDEKSAGLVAKE 199

Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPL 263
           GNVGYL+ LLDF+ Q S+RE A  A+S++ +A+DESRK VFEEGGLGPLLRILETGSM L
Sbjct: 200 GNVGYLVHLLDFNAQPSVRELATSAISVLSTASDESRKRVFEEGGLGPLLRILETGSMHL 259

Query: 264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKA 323
           KEKAA  VEAIT D ENAWA+SAYGG+SVLI+A RSGT   Q+ AVGAIRN+ AVEDIKA
Sbjct: 260 KEKAAAAVEAITIDSENAWAVSAYGGISVLIDACRSGTPSLQTSAVGAIRNVTAVEDIKA 319

Query: 324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383
           +L EEG +PVL+Q L SS+  +QE AA   A LA+SGEYFR LIIQERGLQRL+HLI DS
Sbjct: 320 SLVEEGVIPVLLQLLVSSTTASQEKAAMSTAVLASSGEYFRTLIIQERGLQRLLHLIHDS 379

Query: 384 TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443
            SS  T+E+AL A+SSL++SDS ARILSS+T F+++LGE +K GN++LQQ+++SL+ NLS
Sbjct: 380 ASSD-TIESALRALSSLAVSDSVARILSSSTLFVMKLGELVKHGNLVLQQIAASLVSNLS 438

Query: 444 ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLM 503
           ISDGNKRA+ SCMGSL+KLME PKP G+QE A  A+ SLLTVRSNRKEL++DEKSVMRLM
Sbjct: 439 ISDGNKRAIGSCMGSLVKLMEMPKPAGVQEVAVRALASLLTVRSNRKELMKDEKSVMRLM 498

Query: 504 QMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQR 563
           QMLDPKNE + K FP+ +  AVL GGS GCRKRL+ AGAYQHLQ L +  V GAKK LQR
Sbjct: 499 QMLDPKNEVVGKSFPLAIVTAVLAGGSKGCRKRLLDAGAYQHLQNLTDMNVAGAKKALQR 558

Query: 564 LAGNRLKNIFSRTWRE 579
           L GNRL++IF+RTWRE
Sbjct: 559 LNGNRLRSIFNRTWRE 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131684|ref|XP_002321152.1| predicted protein [Populus trichocarpa] gi|222861925|gb|EEE99467.1| predicted protein [Populus trichocarpa]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/559 (73%), Positives = 480/559 (85%), Gaps = 2/559 (0%)

Query: 22  PLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLH 81
           P Q LLDLIT++LSLLLLS++TV+SF+GRWQ+LRTKL SLQSSLSS+S+SP WS+NPLLH
Sbjct: 9   PPQTLLDLITDVLSLLLLSTITVQSFIGRWQVLRTKLTSLQSSLSSLSESPLWSQNPLLH 68

Query: 82  TLLPSLLSTLQRLKALSDQCT-LSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVL 140
           TLLPSLLSTLQRL ALS QC+  SS  GGKLL QSDLDIA++SLSNHLHDLDLLLRSGVL
Sbjct: 69  TLLPSLLSTLQRLLALSRQCSSTSSLPGGKLLFQSDLDIASSSLSNHLHDLDLLLRSGVL 128

Query: 141 HQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVV 200
           H SNAI+LS PGPGS K+DLV FI D+FTRLQ+GGVEFK+KALESLLQ+L  D KSA++V
Sbjct: 129 HHSNAIILSHPGPGSDKEDLVFFIHDLFTRLQVGGVEFKRKALESLLQILNTDKKSASLV 188

Query: 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS 260
            KEGN+GYL  LLDF+ Q  IREQAV A+SI+ ++NDESRKI+FEEGGLG LLRILETGS
Sbjct: 189 VKEGNIGYLTGLLDFNDQPLIREQAVSAVSILAASNDESRKIIFEEGGLGHLLRILETGS 248

Query: 261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320
           MPLKEKAAI +EAIT DP+N WAISAYGGVSVLIEA R G+  TQ+HAVGAIRN+A VED
Sbjct: 249 MPLKEKAAIAIEAITGDPDNGWAISAYGGVSVLIEACRCGSQATQTHAVGAIRNVAGVED 308

Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
           IK ALAEEG VPV++  + S S+ AQE AA+ IA LA+SG YFR LIIQE+GLQRLMHLI
Sbjct: 309 IKMALAEEGVVPVIIHLIVSGSSAAQEKAANTIAILASSGGYFRDLIIQEKGLQRLMHLI 368

Query: 381 QDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440
           QD +SS  T+E+ L AISSLS+SDS A++LSS+T+ II LGEFIK GN+ LQ++S+SLL 
Sbjct: 369 QDLSSS-DTIEHVLRAISSLSVSDSTAQVLSSSTALIIHLGEFIKHGNMTLQKISASLLA 427

Query: 441 NLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVM 500
           NLSISD NKRA+ASCMGSL+KLME PKPVGLQEA   A++SLLT R N+KELVRDEKS+M
Sbjct: 428 NLSISDRNKRAIASCMGSLVKLMESPKPVGLQEAGALALVSLLTARWNKKELVRDEKSLM 487

Query: 501 RLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKV 560
           +++QMLDPK E ++KKFPVM+  A+L G S+GCRKRL+ AGA QHLQKLAE EV GAKK 
Sbjct: 488 KVVQMLDPKYELIDKKFPVMLVNALLSGRSSGCRKRLLDAGACQHLQKLAEMEVSGAKKA 547

Query: 561 LQRLAGNRLKNIFSRTWRE 579
           LQRL+G  LK++FSRTWRE
Sbjct: 548 LQRLSGISLKSMFSRTWRE 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064884|ref|XP_002301599.1| predicted protein [Populus trichocarpa] gi|222843325|gb|EEE80872.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/559 (71%), Positives = 481/559 (86%), Gaps = 1/559 (0%)

Query: 22  PLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLH 81
           P + LL+LITN+LSLLLLS++TV+SF+GRWQ+LR KL SLQSSLSS+SDSP W +NPLL 
Sbjct: 15  PPETLLNLITNVLSLLLLSTITVQSFIGRWQVLRPKLTSLQSSLSSLSDSPLWPQNPLLQ 74

Query: 82  TLLPSLLSTLQRLKALSDQCT-LSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVL 140
           TLLPSLLSTLQRL +LS QC+  SSF GGKLL QSDLDIA++SLSNHLHDL LLLRSGVL
Sbjct: 75  TLLPSLLSTLQRLLSLSHQCSSTSSFLGGKLLFQSDLDIASSSLSNHLHDLGLLLRSGVL 134

Query: 141 HQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVV 200
           HQSNAI+LS PGPGS+K++LV FI D+FTRLQ+GG EFK+ ALESLLQ+L +D K A++V
Sbjct: 135 HQSNAIILSHPGPGSNKEELVFFIHDLFTRLQVGGAEFKRPALESLLQVLNEDQKLASLV 194

Query: 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS 260
           AKEGN+GYLI LLDF++Q SIREQAV A+SI+ S++ ESRKI+FEEGGLG LLR+LETGS
Sbjct: 195 AKEGNIGYLIGLLDFNNQPSIREQAVSAVSILASSDGESRKIIFEEGGLGHLLRVLETGS 254

Query: 261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320
           MP++EKAAI +EAIT DP+N WAISAY GVSVLIEA + G+ +TQ+HAVGAIRN+A +ED
Sbjct: 255 MPVREKAAIAIEAITDDPDNGWAISAYHGVSVLIEACQCGSQVTQTHAVGAIRNVAGLED 314

Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
           I+ ALAEEG VPV+   L S ++ AQE AADC+A LA+SGEYFR LIIQE+GLQRLM+LI
Sbjct: 315 IRMALAEEGVVPVIFHLLVSGTSAAQEKAADCVAILASSGEYFRTLIIQEKGLQRLMYLI 374

Query: 381 QDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440
           QD +S+  T+E+ L AISSLS+SDS ++ILSS+T+ I+ LGE IK GN++ QQ+S+SLL 
Sbjct: 375 QDLSSTSCTIEHILRAISSLSVSDSVSQILSSSTALIVHLGELIKHGNIISQQISASLLA 434

Query: 441 NLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVM 500
           NLSISDGNKRA+ASCMGSL+KLME PKPVGLQEA   A+LSLLTVR N+KEL RDEK +M
Sbjct: 435 NLSISDGNKRAIASCMGSLVKLMESPKPVGLQEAGALALLSLLTVRWNKKELARDEKGLM 494

Query: 501 RLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKV 560
           +L++MLDP+ E ++KKFPVMV  A+L G S GCRKRL+AAG +QHLQKLAE EV GAKK 
Sbjct: 495 KLVKMLDPRCELIDKKFPVMVVDALLSGRSGGCRKRLLAAGVFQHLQKLAEMEVAGAKKA 554

Query: 561 LQRLAGNRLKNIFSRTWRE 579
           LQRL+ NRLK++FSRTWRE
Sbjct: 555 LQRLSENRLKSMFSRTWRE 573

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568731|ref|XP_002525337.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535396|gb|EEF37070.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/574 (68%), Positives = 487/574 (84%), Gaps = 6/574 (1%)

Query: 9   PSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSI 68
           PS           P +  LDLIT++LS+LL+SSLTVRSF+GRWQ++  KL +LQS+L+S+
Sbjct: 3   PSTATPLPPSPDKPPKTFLDLITSVLSVLLVSSLTVRSFIGRWQLVHRKLTTLQSALTSL 62

Query: 69  SDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHL 128
           S++PHWSENPLL+TLLPS+LSTLQRL +LS+QC+LSS TGGKL  QSDLDIA++ LSNHL
Sbjct: 63  SETPHWSENPLLYTLLPSILSTLQRLHSLSNQCSLSSVTGGKLHFQSDLDIASSWLSNHL 122

Query: 129 HDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQ 188
           HDLDLLL+SGVL QSNAIVLS PGPGS +++L  F+RD+FTRLQIGGVEFKKKAL+SL++
Sbjct: 123 HDLDLLLKSGVLDQSNAIVLSHPGPGSSREELAFFVRDVFTRLQIGGVEFKKKALDSLVR 182

Query: 189 LLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGG 248
           +LK ++KSA++VAKEGNVGYL+SL+     + I+EQAVLA+S++ SA+DE+RKIVFE+GG
Sbjct: 183 ILK-EEKSASLVAKEGNVGYLVSLV-LDSDNVIQEQAVLAVSLLASASDEARKIVFEQGG 240

Query: 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHA 308
           LGPLLR+L+TGSM LKEKAAI VEAIT+DP+N WA+SAYGGVSVLIEA RSG+   ++HA
Sbjct: 241 LGPLLRVLDTGSMSLKEKAAIAVEAITSDPDNGWAVSAYGGVSVLIEACRSGSEAIRTHA 300

Query: 309 VGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNL--AQENAADCIATLAASGEYFRLL 366
           VGAI N+AAVEDIK A+AEEGAVP+LV  L S+S    A+E AA C++ LA+SGEYFR L
Sbjct: 301 VGAITNVAAVEDIKMAIAEEGAVPLLVHLLVSTSTTIAAREKAAHCVSILASSGEYFRAL 360

Query: 367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR 426
           II+ERG+QRLM LIQ    S  T+E+ L AI SLS+SDS +RILSS+T FII+LG+FI +
Sbjct: 361 IIKERGVQRLMDLIQSLPISD-TIEHVLRAIVSLSVSDSVSRILSSSTLFIIRLGDFITQ 419

Query: 427 GNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486
           G ++LQQ+S SLL +LSISDGNKRA+ +C+ SL+KLME PKP G+QEAAT A++SLLTV+
Sbjct: 420 GTLVLQQLSVSLLASLSISDGNKRAIEACVASLVKLMEMPKPAGIQEAATVALVSLLTVK 479

Query: 487 SNRKELVRDEKSVMRLMQMLDPKNEAL-NKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQH 545
           S++KELVRDEKS+M+L+QMLDPKNE + NKKFPVMV AA++ GGS  CRKRL+AAG YQH
Sbjct: 480 SSKKELVRDEKSLMKLVQMLDPKNELVANKKFPVMVVAALVSGGSAECRKRLLAAGVYQH 539

Query: 546 LQKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE 579
           LQ L ETEV GAKK LQRL+GN+LKNIFSRTWRE
Sbjct: 540 LQSLVETEVAGAKKALQRLSGNKLKNIFSRTWRE 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835838|ref|XP_002885801.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297331641|gb|EFH62060.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/561 (67%), Positives = 471/561 (83%), Gaps = 3/561 (0%)

Query: 21  APLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLL 80
           APLQPLLDLITN+LSLLLLSSLTVRSF+GRWQILR+KL SL SSLSS+S+SPHWS+NPLL
Sbjct: 18  APLQPLLDLITNVLSLLLLSSLTVRSFIGRWQILRSKLFSLNSSLSSLSESPHWSQNPLL 77

Query: 81  HTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVL 140
           HTLLPSLLS LQRL +LSDQC+ +SF+GGKLLMQSDLDIA++SLS H+ DLDLLLRSGVL
Sbjct: 78  HTLLPSLLSNLQRLTSLSDQCSSASFSGGKLLMQSDLDIASSSLSTHISDLDLLLRSGVL 137

Query: 141 HQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVV 200
           HQ NAIVLS P P S K D+  FIRD+FTRLQIGG EFKKK+LESLLQLL D++KS+ ++
Sbjct: 138 HQQNAIVLSLPPPTSDKDDIAFFIRDLFTRLQIGGAEFKKKSLESLLQLLTDNEKSSRII 197

Query: 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS 260
           AKEGNVGYL++LLD HH   IRE A+ A+S++ S++ +SRK VFE+GGLGPLLR+LETGS
Sbjct: 198 AKEGNVGYLVTLLDLHHHPLIREHALAAVSLLTSSSVDSRKTVFEQGGLGPLLRLLETGS 257

Query: 261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320
            PLK +AA+ +EAIT DPE AWAISAYGGV+VLIEA RSG+   Q H  GAI NI+AVE+
Sbjct: 258 PPLKTRAAVAIEAITVDPETAWAISAYGGVTVLIEACRSGSKEVQEHIAGAISNISAVEE 317

Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
           I+  LAEEGA+PV++  L S S+  +E  A+ I+ +++SGEYFR LI++ERGLQ L+HL+
Sbjct: 318 IRTTLAEEGAIPVILPLLISGSSSVKEKTANFISLISSSGEYFRDLIVRERGLQILIHLV 377

Query: 381 QDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440
           Q+S S+  T+E++LLA++ +S  ++ +R+LSS+T+FII+LGE IK GNV+LQQ+SSSLL 
Sbjct: 378 QES-SNPDTIEHSLLALTHISAMETISRVLSSSTTFIIRLGELIKHGNVILQQISSSLLS 436

Query: 441 NLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVM 500
           NL+ISDGNKRAVA C+ SLI+LME PKP GLQEAAT+A  SLLTVRSNRKEL+RDEKSV+
Sbjct: 437 NLTISDGNKRAVADCLSSLIRLMESPKPAGLQEAATEAAKSLLTVRSNRKELMRDEKSVI 496

Query: 501 RLMQMLDPKNEAL-NKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK 559
           RL+QMLDP+NE + NK+ PVM+  A+L GGS   R +L+  GA ++LQ L E EV GAKK
Sbjct: 497 RLVQMLDPRNERMANKELPVMIVTAILSGGSYAARTKLIGVGADRYLQSLEEMEVSGAKK 556

Query: 560 VLQRL-AGNRLKNIFSRTWRE 579
            +QRL AGNRLKNIF+R W++
Sbjct: 557 AVQRLAAGNRLKNIFTRAWKD 577

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332083029|gb|AEE00747.1| armadillo repeat-containing protein [Gossypium hirsutum]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/573 (66%), Positives = 449/573 (78%), Gaps = 5/573 (0%)

Query: 7   PPPSPTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLS 66
           PP  P   +E     P Q LLDLIT +LSLLLLSSLTVRSFVGRWQ+LR+KL SLQSSLS
Sbjct: 3   PPQQPRPLSEQPETQPPQTLLDLITGVLSLLLLSSLTVRSFVGRWQVLRSKLCSLQSSLS 62

Query: 67  SISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSN 126
           SIS+SPHW++N LLH L PSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLD+A++SLSN
Sbjct: 63  SISESPHWNDNSLLHNLFPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDMASSSLSN 122

Query: 127 HLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESL 186
           HLHDLDLLLRSGVLHQSNAIVLS PGPGS K DL  FIRD+FTRLQIGG+EFKKKALESL
Sbjct: 123 HLHDLDLLLRSGVLHQSNAIVLSHPGPGSDKDDLGFFIRDLFTRLQIGGIEFKKKALESL 182

Query: 187 LQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246
           LQLL D++KS  +VAKEGNVGYLISLL+ + Q  IREQAVLA+S++ S++++ RKIVFEE
Sbjct: 183 LQLLNDNEKSTPLVAKEGNVGYLISLLEANSQPLIREQAVLAVSVLASSSEDLRKIVFEE 242

Query: 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQS 306
           GGLGPLLRILETGS+ LKEKAAI VEAIT DPEN WAISAYGGVSVLIEA RSG+  TQ+
Sbjct: 243 GGLGPLLRILETGSIALKEKAAIAVEAITADPENTWAISAYGGVSVLIEACRSGSQPTQT 302

Query: 307 HAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLL 366
           HAVGA+RN+A+VEDI+ AL EEGAVPVL Q L S ++ A   ++     L     +FR +
Sbjct: 303 HAVGALRNVASVEDIRMALGEEGAVPVLFQLLISGTSAATRKSSQ----LPFYTGFFRRI 358

Query: 367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR 426
           + +    ++ +  I    S  +       A S  +L         +    IIQLGEFIK 
Sbjct: 359 LSRFDYTRKRVAKIDAYDSRFIKFRYN-RACSPYNLFPFGNGFQFTDFITIIQLGEFIKH 417

Query: 427 GNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486
           GN++LQQ+S+SLL  LSI +GNKRA++SCMGSL+KLME PKPVGLQ+AA  A++SLLTVR
Sbjct: 418 GNMILQQISASLLSKLSIREGNKRAISSCMGSLVKLMESPKPVGLQDAAAQAIVSLLTVR 477

Query: 487 SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHL 546
           SNR EL + EKSVMRL+QMLDPKN+ + KK+P+M+  A+L GGS  CRK LVAAGA +HL
Sbjct: 478 SNRTELAKGEKSVMRLVQMLDPKNDTVFKKYPLMLVTALLAGGSGDCRKILVAAGANKHL 537

Query: 547 QKLAETEVPGAKKVLQRLAGNRLKNIFSRTWRE 579
           Q L E E  GAKK LQRL G  LK+IFSRTWRE
Sbjct: 538 QILTEMEFAGAKKALQRLTGITLKSIFSRTWRE 570

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224987|ref|NP_178638.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|30678229|ref|NP_849939.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|20197848|gb|AAM15279.1| hypothetical protein [Arabidopsis thaliana] gi|20466608|gb|AAM20621.1| unknown protein [Arabidopsis thaliana] gi|50897260|gb|AAT85769.1| At2g05810 [Arabidopsis thaliana] gi|330250879|gb|AEC05973.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|330250880|gb|AEC05974.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/564 (67%), Positives = 469/564 (83%), Gaps = 5/564 (0%)

Query: 20  VAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPL 79
            APLQPL+DLITN+LSLLLLSSLTVRSF+GRWQILR+KL +L SSLSS+S+SPHWS+NPL
Sbjct: 17  TAPLQPLVDLITNVLSLLLLSSLTVRSFIGRWQILRSKLFTLNSSLSSLSESPHWSQNPL 76

Query: 80  LHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGV 139
           LHTLLPSLLS LQRL +LSDQC+ +SF+GGKLLMQSDLDIA++SLS H+ DLDLLLRSGV
Sbjct: 77  LHTLLPSLLSNLQRLSSLSDQCSSASFSGGKLLMQSDLDIASSSLSTHISDLDLLLRSGV 136

Query: 140 LHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAV 199
           LHQ NAIVLS P P S K D+  FIRD+FTRLQIGG EFKKK+LESLLQLL D++KSA +
Sbjct: 137 LHQQNAIVLSLPPPTSDKDDIAFFIRDLFTRLQIGGAEFKKKSLESLLQLLTDNEKSARI 196

Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG 259
           +AKEGNVGYL++LLD HH   IRE A+ A+S++ S++ +SRK VFE+GGLGPLLR+LETG
Sbjct: 197 IAKEGNVGYLVTLLDLHHHPLIREHALAAVSLLTSSSADSRKTVFEQGGLGPLLRLLETG 256

Query: 260 SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319
           S P K +AAI +EAIT DP  AWAISAYGGV+VLIEA RSG+   Q H  GAI NIAAVE
Sbjct: 257 SSPFKTRAAIAIEAITADPATAWAISAYGGVTVLIEACRSGSKQVQEHIAGAISNIAAVE 316

Query: 320 DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER-GLQRLMH 378
           +I+  LAEEGA+PVL+Q L S S+  QE  A+ I+ +++SGEY+R LI++ER GLQ L+H
Sbjct: 317 EIRTTLAEEGAIPVLIQLLISGSSSVQEKTANFISLISSSGEYYRDLIVRERGGLQILIH 376

Query: 379 LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL 438
           L+Q+S S+  T+E+ LLA+S +S  ++ +R+LSS+T FII+LGE IK GNV+LQQ+S+SL
Sbjct: 377 LVQES-SNPDTIEHCLLALSQISAMETVSRVLSSSTRFIIRLGELIKHGNVILQQISTSL 435

Query: 439 LGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKS 498
           L NL+ISDGNKRAVA C+ SLI+LME PKP GLQEAAT+A  SLLTVRSNRKEL+RDEKS
Sbjct: 436 LSNLTISDGNKRAVADCLSSLIRLMESPKPAGLQEAATEAAKSLLTVRSNRKELMRDEKS 495

Query: 499 VMRLMQMLDPKNEAL-NKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGA 557
           V+RL+QMLDP+NE + NK+ PVMV  A+L GGS   R +L+  GA ++LQ L E EVPGA
Sbjct: 496 VIRLVQMLDPRNERMNNKELPVMVVTAILSGGSYAARTKLIGLGADRYLQSLEEMEVPGA 555

Query: 558 KKVLQRL-AGNRLKNI-FSRTWRE 579
           KK +QRL AGNRLK+I F+R W++
Sbjct: 556 KKAVQRLAAGNRLKSIFFTRPWKD 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115478092|ref|NP_001062641.1| Os09g0135800 [Oryza sativa Japonica Group] gi|113630874|dbj|BAF24555.1| Os09g0135800 [Oryza sativa Japonica Group] gi|125604816|gb|EAZ43852.1| hypothetical protein OsJ_28467 [Oryza sativa Japonica Group] gi|215717012|dbj|BAG95375.1| unnamed protein product [Oryza sativa Japonica Group] gi|215766227|dbj|BAG98455.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/550 (47%), Positives = 375/550 (68%), Gaps = 18/550 (3%)

Query: 43  TVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCT 102
           +V++   RW+ +   L++LQ+SL++  DS     +PL   L+ SLL  L+ L+ALS +C 
Sbjct: 35  SVKALHARWRAVHGTLLALQTSLAAAPDSA--VSHPLFADLVASLLPALRSLQALSARCQ 92

Query: 103 LSSFTGGKLLMQSDLDIANTSLSNHLHDLDLLLRSGVLH------QSNAIVLSQPGPGSH 156
             S  GG+L +QSDLDIA +SLS  LHDL LLLRSG+L+        NAIVL  P P + 
Sbjct: 93  DPSLPGGRLRLQSDLDIAASSLSLLLHDLSLLLRSGILYVDPSASSPNAIVLQVPAPAAS 152

Query: 157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD--DKSAAVVAKEGNVGYLISLLD 214
           + D  LFIRD F RLQIGG++ K KAL SLL LL +D   +SA +VA +G+V  L+ LLD
Sbjct: 153 RADKSLFIRDAFARLQIGGLDLKLKALASLLDLLANDIAAESAHIVATDGDVAALLRLLD 212

Query: 215 FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMP-LKEKAAIGVEA 273
               S++R++A   ++ + +A   SRK+VF+EGGLGPLLR+L++GS P  +E+A   +EA
Sbjct: 213 ASSHSALRDRAAATVAHLATACVASRKVVFDEGGLGPLLRVLDSGSAPATRERAVAAIEA 272

Query: 274 ITTDPENAWAISAYGGVSVLIEAFR--SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAV 331
           IT D  +AWA++AYGGV +LI A R  SG+ + Q+ AV A++N+A++ED+++AL EEG +
Sbjct: 273 ITADVGSAWAVAAYGGVPILINACRPGSGSPVVQALAVAALKNVASIEDVRSALVEEGGL 332

Query: 332 PVLVQSLTSSSNLAQENAADCIATLAASGEY-FRLLIIQERGLQRLMHLIQDSTSSIVTV 390
           P+LV  L S +  AQ+ +A CI +LA+ G++  +  I+Q   L  L+  +  + S +   
Sbjct: 333 PILVDLLASGTIDAQKGSALCIWSLASLGDHEIQYQIVQAGALLPLLQALH-TASGLDLH 391

Query: 391 ENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS--ISDG 447
           +  L AI +L++  +AAR L S+  F  QL + + RG ++LLQQ+++ ++  L+  +SD 
Sbjct: 392 DTVLRAIHALAVVPAAARTLCSSPLFFAQLTDLMCRGGSILLQQMAADMVAELAPGVSDD 451

Query: 448 NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD 507
            KR +A C+  L+K+ME  KP  +QE+A  A+L+L+T++ NRKELVRDEKSV RL+ MLD
Sbjct: 452 TKRCMAPCICMLVKMMETAKPATVQESAGRALLALMTLKFNRKELVRDEKSVTRLLHMLD 511

Query: 508 PKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGN 567
           P+NE ++KK+PV V  A+  GG NG R+RL  +G  QHLQKLAE EVPGAKK LQR++GN
Sbjct: 512 PRNEEIDKKYPVSVVLALALGGGNGTRRRLADSGICQHLQKLAEAEVPGAKKALQRISGN 571

Query: 568 RLKNIFSRTW 577
           RLK++ SR W
Sbjct: 572 RLKSLLSRGW 581

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:2056529	580	AT2G05810 "AT2G05810" [Arabido	0.963	0.962	0.522	2.9e-142
TAIR|locus:2157358	555	AT5G50900 [Arabidopsis thalian	0.901	0.940	0.286	1.7e-50
TAIR|locus:2043709	553	AT2G45720 "AT2G45720" [Arabido	0.877	0.918	0.288	6e-48
TAIR|locus:2197654	573	AT1G61350 [Arabidopsis thalian	0.580	0.586	0.265	9.5e-46
TAIR|locus:2198235	574	AT1G01830 "AT1G01830" [Arabido	0.564	0.569	0.261	1.8e-43
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.314	0.512	0.229	3e-12
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.309	0.215	0.284	3.9e-12
TAIR|locus:2099634	408	AT3G03440 "AT3G03440" [Arabido	0.298	0.424	0.280	1.4e-10
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.290	0.470	0.283	2.1e-10
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.321	0.2	0.292	7.2e-10

TAIR|locus:2056529 AT2G05810 "AT2G05810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 294/563 (52%), Positives = 362/563 (64%)

Query:    21 APLQPXXXXXXXXXXXXXXXXXXVRSFVGRWQILRTKXXXXXXXXXXXXXXXXXXENXXX 80
             APLQP                  VRSF+GRWQILR+K                  +N   
Sbjct:    18 APLQPLVDLITNVLSLLLLSSLTVRSFIGRWQILRSKLFTLNSSLSSLSESPHWSQNPLL 77

Query:    81 XXXXXXXXXXXQRLKALSDQCTLSSFTGGKLLMQSDLDIANTXXXXXXXXXXXXXRSGVL 140
                        QRL +LSDQC+ +SF+GGKLLMQSDLDIA++             RSGVL
Sbjct:    78 HTLLPSLLSNLQRLSSLSDQCSSASFSGGKLLMQSDLDIASSSLSTHISDLDLLLRSGVL 137

Query:   141 HQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFXXXXXXXXXXXXXXXXXXXXVV 200
             HQ NAIVLS P P S K D+  FIRD+FTRLQIGG EF                    ++
Sbjct:   138 HQQNAIVLSLPPPTSDKDDIAFFIRDLFTRLQIGGAEFKKKSLESLLQLLTDNEKSARII 197

Query:   201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS 260
             AKEGNVGYL++LLD HH   IRE A+ A+S++ S++ +SRK VFE+GGLGPLLR+LETGS
Sbjct:   198 AKEGNVGYLVTLLDLHHHPLIREHALAAVSLLTSSSADSRKTVFEQGGLGPLLRLLETGS 257

Query:   261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320
              P K +AAI +EAIT DP  AWAISAYGGV+VLIEA RSG+   Q H  GAI NIAAVE+
Sbjct:   258 SPFKTRAAIAIEAITADPATAWAISAYGGVTVLIEACRSGSKQVQEHIAGAISNIAAVEE 317

Query:   321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-LQRLMHL 379
             I+  LAEEGA+PVL+Q L S S+  QE  A+ I+ +++SGEY+R LI++ERG LQ L+HL
Sbjct:   318 IRTTLAEEGAIPVLIQLLISGSSSVQEKTANFISLISSSGEYYRDLIVRERGGLQILIHL 377

Query:   380 IQDSTSSIVTVENXXXXXXXXXXXXXXXXXXXXTTSFIIQLGEFIKRXXXXXXXXXXXXX 439
             +Q+S S+  T+E+                    +T FII+LGE IK              
Sbjct:   378 VQES-SNPDTIEHCLLALSQISAMETVSRVLSSSTRFIIRLGELIKHGNVILQQISTSLL 436

Query:   440 XXXXISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSV 499
                 ISDGNKRAVA C+ SLI+LME PKP GLQEAAT+A  SLLTVRSNRKEL+RDEKSV
Sbjct:   437 SNLTISDGNKRAVADCLSSLIRLMESPKPAGLQEAATEAAKSLLTVRSNRKELMRDEKSV 496

Query:   500 MRLMQMLDPKNEALN-KKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558
             +RL+QMLDP+NE +N K+ PVMV  A+L GGS   R +L+  GA ++LQ L E EVPGAK
Sbjct:   497 IRLVQMLDPRNERMNNKELPVMVVTAILSGGSYAARTKLIGLGADRYLQSLEEMEVPGAK 556

Query:   559 KVLQRLA-GNRLKNIF-SRTWRE 579
             K +QRLA GNRLK+IF +R W++
Sbjct:   557 KAVQRLAAGNRLKSIFFTRPWKD 579

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2157358 AT5G50900 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 153/534 (28%), Positives = 251/534 (47%)

Query:    46 SFVGRWQILRTKXXXXXXXXXXXXXXXXXXENXXXXXXXXXXXXXXQRLKALSDQCTLSS 105
             SF  +W  +R K                   N                  A++ +C    
Sbjct:    29 SFKCKWSSIRAKLADLKTQLSDFSDFAGSSSNKLAVDLLVSVRETLNDAVAVAARCEGPD 88

Query:   106 FTGGKLLMQSDLDIANTXXXXXXXXXXXXXRSGVLHQSNAIVLSQPGPGSHKQDLVLFIR 165
                GKL  QS++D                 +SG+L   N IV+S     S K+ + L  R
Sbjct:    89 LAEGKLKTQSEVDSVMARLDRHVKDAEVLIKSGLLID-NGIVVSGFSISSKKEAVRLEAR 147

Query:   166 DIFTRLQIGGVEFXXXXXXXXXXXXXXXXXXXXVVAKEGNVGYLISLLDFHHQSSIREQA 225
             ++  RLQIGGVE                     +   +G V  L+ LLD    S + ++ 
Sbjct:   148 NLVIRLQIGGVESKNSAIDSLIELLQEDDKNVMICVAQGVVPVLVRLLD--SCSLVMKEK 205

Query:   226 VLALSIIVSANDESRKIVFEEGG--LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA 283
              +A+   +S  + S+ ++  EG   L  LLR+LE+GS   KEKA + ++A++   ENA A
Sbjct:   206 TVAVISRISMVESSKHVLIAEGLSLLNHLLRVLESGSGFAKEKACVALQALSLSKENARA 265

Query:   284 ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSN 343
             I   GG+S L+E  + G+  +Q+ A G +RN+A   + K    EE A+ VL+  ++S ++
Sbjct:   266 IGCRGGISSLLEICQGGSPGSQAFAAGVLRNLALFGETKENFVEENAIFVLISMVSSGTS 325

Query:   344 LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENXXXXXXXXXXX 403
             LAQENA  C+A L +  E   + +++E G+Q L     DS SS+ ++E            
Sbjct:   326 LAQENAVGCLANLTSGDEDLMISVVREGGIQCLKSF-WDSVSSVKSLE-VGVVLLKNLAL 383

Query:   404 XXXXXXXXXTTSFIIQLGEFIKRXXXXXXXXXXXXXXXXXISDGNKRAV--ASCMGSLIK 461
                      +  FI +L   +                    S  +++ +  + C+  LI 
Sbjct:   384 CPIVREVVISEGFIPRLVPVLSCGVLGVRIAAAEAVSSLGFSSKSRKEMGESGCIVPLID 443

Query:   462 LMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV 521
             +++  K +  +EAA+ A+ +LL   SNRK   + +K V+ L+Q+LDPK + L+K++ V  
Sbjct:   444 MLD-GKAIEEKEAASKALSTLLVCTSNRKIFKKSDKGVVSLVQLLDPKIKKLDKRYTV-- 500

Query:   522 TAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSR 575
             +A  L   S  CRK++VAAGA  HLQKL + +  GAKK+ + L+ +++  +F+R
Sbjct:   501 SALELLVTSKKCRKQVVAAGACLHLQKLVDMDTEGAKKLAENLSRSKIWGVFTR 554

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2043709 AT2G45720 "AT2G45720" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 156/540 (28%), Positives = 250/540 (46%)

Query:    44 VRSFVGRWQILRTKXXXXXXXXXXXXXXXXXXENXXXXXXXXXXXXXXQRLKALSDQCTL 103
             V+ F  RW+++ ++                  ++              +    L++ C +
Sbjct:    37 VKGFSSRWRVIISRLEKIPTCLSDLSSHPCFSKHTLCKEQLQAVLETLKETIELANVC-V 95

Query:   104 SSFTGGKLLMQSDLDIANTXXXXXXXXXXXXXRSGVLHQSNAIVLSQPGPGSHKQDLVLF 163
             S    GKL MQSDLD  +              ++GVL +     +++P   S  QDL  F
Sbjct:    96 SEKQEGKLKMQSDLDSLSAKIDLSLKDCGLLMKTGVLGE-----VTKP-LSSSTQDLETF 149

Query:   164 -IRDIFTRLQIGGVEFXXXXXXXXXXXXXXXXXXXXVVAKEGNVGYLISLLDFHHQSSIR 222
              +R++  RLQIG +E                           NV  L+ LL      S+R
Sbjct:   150 SVRELLARLQIGHLESKRKALEQLVEVMKEDEKAVITALGRTNVASLVQLLTAT-SPSVR 208

Query:   223 EQAVLAL-SIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA 281
             E AV  + S+  S   E+  I   E  L  L+R+LE+GS+  KEKA I ++ ++   E +
Sbjct:   209 ENAVTVICSLAESGGCENWLI--SENALPSLIRLLESGSIVAKEKAVISLQRMSISSETS 266

Query:   282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS 341
              +I  +GGV  LIE  ++G +++QS +   ++NI+AV +++  LAEEG V V++  L   
Sbjct:   267 RSIVGHGGVGPLIEICKTGDSVSQSASACTLKNISAVPEVRQNLAEEGIVKVMINILNCG 326

Query:   342 SNL-AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD---STSSIVTVENXXXXX 397
               L ++E AA+C+  L +S E  R  +I E G+Q L+  +       S +  + N     
Sbjct:   327 ILLGSKEYAAECLQNLTSSNETLRRSVISENGIQTLLAYLDGPLPQESGVAAIRNLVGSV 386

Query:   398 XXXXXXXXXXXXXXXTTSFIIQLGEFIKRXXXXXXXXXXXXXXXXXISDGNKRAV--ASC 455
                                I  L   +K                   S+  KR +  + C
Sbjct:   387 SVETYF-----------KIIPSLVHVLKSGSIGAQQAAASTICRIATSNETKRMIGESGC 435

Query:   456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNK 515
             +  LI+++E  K  G +E A  A+ SL+TV  N +E+ RDEKSV  L+ +L+P      K
Sbjct:   436 IPLLIRMLEA-KASGAREVAAQAIASLVTVPRNCREVKRDEKSVTSLVMLLEPSPGNSAK 494

Query:   516 KFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNIFSR 575
             K+ V   AA+    S  C+K +V+ GA  +L+KL+E EVPG+KK+L+R+   +LK+ FSR
Sbjct:   495 KYAVSGLAALCS--SRKCKKLMVSHGAVGYLKKLSELEVPGSKKLLERIEKGKLKSFFSR 552

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2197654 AT1G61350 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 9.5e-46, Sum P(2) = 9.5e-46
 Identities = 92/347 (26%), Positives = 162/347 (46%)

Query:    44 VRSFVGRWQILRTKXXXXXXXXXXXXXXXXXXENXXXXXXXXXXXXXXQRLKALSDQCTL 103
             ++SF  +WQ++RTK                  +                    L+ +C  
Sbjct:    31 IKSFNIKWQLIRTKLQELYSGLDSLRNLNSGFDPSLSSLISAILISLKDTYD-LATRCVN 89

Query:   104 SSFTGGKLLMQSDLDIANTXXXXXXXXXXXXXRSGVLHQSNAIVLSQPGPGSHKQDLVLF 163
              SF+G KLLMQSDLD+                 +G+L    AIV+ +P   + K D+  +
Sbjct:    90 VSFSG-KLLMQSDLDVMAGKFDGHTRNLSRIYSAGILSHGFAIVVLKPNGNACKDDMRFY 148

Query:   164 IRDIFTRLQIGGVEFXXXXXXXXXXXXXXXXXXXXVVAKEGN-VGYLISLLDFHHQSSIR 222
             IRD+ TR++IG +E                     ++ +  + V  L+  LD   +  I+
Sbjct:   149 IRDLLTRMKIGDLEMKKQALVKLNEAMEEDDRYVKILIEISDMVNVLVGFLD--SEIGIQ 206

Query:   223 EQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282
             E++  A+   +S     R ++   G +GPL+R+LE G+   +E +A  +  +T + ENAW
Sbjct:   207 EESAKAV-FFISGFGSYRDVLIRSGVIGPLVRVLENGNGVGREASARCLMKLTENSENAW 265

Query:   283 AISAYGGVSVLIEAFRS---GTALTQSHAVGAIRNIAAVEDIKAALAEEG-AVPVLVQSL 338
             ++SA+GGVS L++       G  L  + + G +RN+  VE+IK  + EE   V   ++ +
Sbjct:   266 SVSAHGGVSALLKICSCSDFGGELIGT-SCGVLRNLVGVEEIKRFMIEEDHTVATFIKLI 324

Query:   339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS 385
              S   + Q N+ D + ++    E  R ++++E G+Q L+ ++ D  S
Sbjct:   325 GSKEEIVQVNSIDLLLSMCCKDEQTRDILVREGGIQELVSVLSDPNS 371

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198235 AT1G01830 "AT1G01830" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
 Identities = 88/337 (26%), Positives = 163/337 (48%)

Query:    44 VRSFVGRWQILRTKXXXXXXXXXXXXXXXXXXENXXXXXXXXXXXXXXQRLKALSDQCTL 103
             V+ F GRW+ + +K                  +N                +  L++QC+ 
Sbjct:    53 VKKFTGRWKTIISKIEQIPACLSDLSSHPCFSKNKLCNEQLQSVAKTLSEVIELAEQCST 112

Query:   104 SSFTGGKLLMQSDLDIANTXXXXXXXXXXXXXRSGVLHQSNA-IVLSQPGPGSHKQDLVL 162
               + G KL MQSDLD  +              ++GVL ++   + +S     S +   + 
Sbjct:   113 DKYEG-KLRMQSDLDSLSGKLDLNLRDCGVLIKTGVLGEATLPLYISS----SSETPKIS 167

Query:   163 FIRDIFTRLQIGGVEFXXXXXXXXXXXXXXXXXXXXV-VAKEGNVGYLISLLDFHHQSSI 221
              ++++  RLQIG +E                     + +    NV  L+ LL     + I
Sbjct:   168 SLKELLARLQIGHLESKHNALESLLGAMQEDEKMVLMPLIGRANVAALVQLLTAT-STRI 226

Query:   222 REQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA 281
             RE+AV  +S++  +      ++  EG L PL+R++E+GS+  KEKAAI ++ ++   ENA
Sbjct:   227 REKAVNLISVLAESGHCDEWLI-SEGVLPPLVRLIESGSLETKEKAAIAIQRLSMTEENA 285

Query:   282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS 341
               I+ +GG++ LI+  ++G +++Q+ +  A++N++AV +++  LAEEG + V +  L   
Sbjct:   286 REIAGHGGITPLIDLCKTGDSVSQAASAAALKNMSAVSELRQLLAEEGIIRVSIDLLNHG 345

Query:   342 SNL-AQENAADCIATLAASGEYFRLLIIQERGLQRLM 377
               L ++E+ A+C+  L A+ +  R  I+ E G+  L+
Sbjct:   346 ILLGSREHMAECLQNLTAASDALREAIVSEGGVPSLL 382

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 42/183 (22%), Positives = 99/183 (54%)

Query:   206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKE 265
             + +L+S LD  +    ++QA + + ++     E+R  + + G + PL+ ++ +  + L+E
Sbjct:    64 INHLVSHLDSSYSIDEQKQAAMEIRLLSKNKPENRIKIAKAGAIKPLISLISSSDLQLQE 123

Query:   266 KAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAAL 325
                  +  ++   EN  +I++ G +  L+ A + GT   + +A  A+  ++ +E+ K A+
Sbjct:   124 YGVTAILNLSLCDENKESIASSGAIKPLVRALKMGTPTAKENAACALLRLSQIEENKVAI 183

Query:   326 AEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS 385
                GA+P+LV  L +    A+++A+  + +L ++ E  ++  +Q   ++ L+ L+ D  S
Sbjct:   184 GRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKEN-KIRAVQSGIMKPLVELMADFGS 242

Query:   386 SIV 388
             ++V
Sbjct:   243 NMV 245

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 52/183 (28%), Positives = 96/183 (52%)

Query:   199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
             V+   G +  L+ LL +   S+ +E AV AL + +S ND ++K + + G + PL+ +LE 
Sbjct:   581 VIGNSGAIVLLVELL-YSTDSATQENAVTAL-LNLSINDNNKKAIADAGAIEPLIHVLEN 638

Query:   259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318
             GS   KE +A  + +++   EN   I   G +  L++   +GT   +  A  A+ N++  
Sbjct:   639 GSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIH 698

Query:   319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH 378
             ++ KA + + GAV  L+  +  ++ +  + A   +A LA   E  R  I QE G+  L+ 
Sbjct:   699 QENKAMIVQSGAVRYLIDLMDPAAGMV-DKAVAVLANLATIPEG-RNAIGQEGGIPLLVE 756

Query:   379 LIQ 381
             +++
Sbjct:   757 VVE 759

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 51/182 (28%), Positives = 95/182 (52%)

Query:   209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKI-VFEEGGLGPLLRILETGSMPLKEKA 267
             L+S+L F    S  E A+LAL + ++  DE  K+ + E G L P++  L++ S  L+E A
Sbjct:   109 LVSMLRFDSPESHHEAALLAL-LNLAVKDEKNKVSIIEAGALEPIINFLQSNSPTLQEYA 167

Query:   268 AIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-IKAALA 326
             +  +  ++    N   I A G V +L++  + G+   ++ AV A+ N++ + D +   LA
Sbjct:   168 SASLLTLSASANNKPIIGANGVVPLLVKVIKHGSPQAKADAVMALSNLSTLPDNLSMILA 227

Query:   327 EEGAVPVLVQSLTSSSNLAQENAADC---IATLAASGEYFRL-LIIQERGLQRLMHLIQD 382
              +   P+L  +L  SS  + + +  C   I  L  SGE  R  L+  E G+  ++ ++++
Sbjct:   228 TKPLSPIL--NLLKSSKKSSKTSEKCCSLIEALMVSGEEARTGLVSDEGGVLAVVEVLEN 285

Query:   383 ST 384
              +
Sbjct:   286 GS 287

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 49/173 (28%), Positives = 90/173 (52%)

Query:   219 SSIREQAVLALSI-IVSANDESRKI-VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT 276
             SSI EQ   A+ I ++S N    +I + + G + PL+ ++ +  + L+E     V  ++ 
Sbjct:    73 SSIEEQKQAAMEIRLLSKNKPENRIKLAKAGAIKPLVSLISSSDLQLQEYGVTAVLNLSL 132

Query:   277 DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQ 336
               EN   I + G V  L+ A R GT  T+ +A  A+  ++ VE+ K  +   GA+P+LV 
Sbjct:   133 CDENKEMIVSSGAVKPLVNALRLGTPTTKENAACALLRLSQVEENKITIGRSGAIPLLVN 192

Query:   337 SLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQR-LMHLIQDSTSSIV 388
              L +    A+++A+  + +L ++ E     +  E G+ + L+ L+ D  S +V
Sbjct:   193 LLENGGFRAKKDASTALYSLCSTNENKTRAV--ESGIMKPLVELMIDFESDMV 243

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 57/195 (29%), Positives = 96/195 (49%)

Query:   200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS---ANDESRKIVFEEGGLGPLLRIL 256
             VAK G V  L+ L        ++EQA  AL+ + +   +N+ +  +  E G L  L+++ 
Sbjct:   560 VAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLT 619

Query:   257 ETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-GTALT--QSHAVGAIR 313
             ++    ++++AA  +  ++ D +N  +IS  GGV  L+   +S   A T  Q  A GA+ 
Sbjct:   620 KSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALW 679

Query:   314 NIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS-GEYFRLLIIQERG 372
              ++  E    A+  EG VP L+    S +    E AA  +  LA + G   R  I++E G
Sbjct:   680 GLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALR--IVEEGG 737

Query:   373 LQRLMHLIQDSTSSI 387
             +  L+HL   S S +
Sbjct:   738 VPALVHLCSSSVSKM 752

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	579
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.003

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSS 341
           A+   GG+  L+    S     Q  A  A+ N++A   D   A+ E G +P LVQ L S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 342 SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401
                + A   +  LAA  E  +L++++  G+ +L++L+  S   I   +NA  A+S+L+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI--QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 49/257 (19%)

Query: 198 AVVAKEGNVGYLISLLDFHHQSSIREQ--AVLALSIIVSANDESRKIVFEEGGLGPLLRI 255
           A+  +EG V  LISLL     SS ++Q  AV  L+I+    DES+  +   GG+ PL+++
Sbjct: 441 ALGGREG-VQLLISLLG---LSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496

Query: 256 LETGSMPLKEKAAIGVEAITTDPENAWA-ISAYGGVSVLIEAFRSG-------------- 300
           LETGS   KE +A  +  +    E+  A + + G V  L+   ++G              
Sbjct: 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556

Query: 301 -------------TALTQS----------HAVGAIRNIAAVEDI--KAALAEEGAVPVLV 335
                        TAL               +G + ++A++ED+  + + A + A+  L+
Sbjct: 557 LVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND-ALRTLI 615

Query: 336 QSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL 395
           Q L+SS    QE AA  +A + +S +     +  +  +   + L+ ++T ++ T   +  
Sbjct: 616 QLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVAT--QSAR 673

Query: 396 AISSLSLSDSAARILSS 412
           A+++LS S    R +S 
Sbjct: 674 ALAALSRSIKENRKVSY 690

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFRSGT 301
           V + GGL  L+ +L +    ++ +AA  +  ++  + +N  A+   GG+  L++  +S  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 302 ALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358
                 A+ A+RN+AA  ED K  + E G VP LV  L SS+   Q+NA   ++ LA+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 198 AVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE 257
             V + G +  L+SLL      +++ +A  ALS + + N+++ + V E GGL  L+++L+
Sbjct: 1   EAVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 258 TGSMPLKEKAAIGVEAITTDPE-NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316
           +    + + A   +  +   PE N   +   GGV  L+    S     Q +A GA+ N+A
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 317 A 317
           +
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 13/234 (5%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGN-VGYLISLLDFHHQSSIREQAVLALSIIVSAND 237
           K+     LL+L K  +++   +      +  L+SLL        +  A   L ++    D
Sbjct: 32  KELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEED 90

Query: 238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT----DPENAWAISAYGGVSVL 293
              K++   G + PLL +L++GS   ++ AA  + A+++    D   +   S  G V  L
Sbjct: 91  LRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSL 149

Query: 294 IEAFRSGTALTQS---HAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENA 349
            +  + G    +       GA+RN+    +   +A  E G V +LV+ L+S ++ AQ NA
Sbjct: 150 WDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANA 209

Query: 350 ADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE--NALLAISSLS 401
           A  +A L  + E     ++    +++L+ L+       V  E   AL A+SS S
Sbjct: 210 ASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS 263

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD 382
            A+ + G +P LV  L+SS    Q  AA  ++ L+A        +++  GL  L+ L++ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 383 STSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL 442
               +  V+ AL A+ +L+      +++      + +L   +   N  +Q+ ++  L NL
Sbjct: 61  EDEEV--VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 443 S 443
           +
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 28/168 (16%)

Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMP 262
           G V  L+ LL   +  +    A L L+ ++ A + S   V + G +  LL++L  G  + 
Sbjct: 189 GGVDILVKLLSSGNSDAQANAASL-LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVS 247

Query: 263 LKEKAAIGVEAITTDPENA-WAISAYGGVSVLIEAF----------RSGTALTQSHAVGA 311
           ++ +AA  +EA+++  + A  AI+  GG+  LI A               AL Q +A+GA
Sbjct: 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQAL-QENAMGA 306

Query: 312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQ--ENAADCIATLA 357
           + NI             G +  L+  L   S   +     AD +  LA
Sbjct: 307 LANIC------------GGMSALILYLGELSESPRSPAPIADTLGALA 342

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 365 LLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLG--- 421
             +IQ  GL  L+ L+  S  ++     A  A+S+LS  ++           +++ G   
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQ--REAAWALSNLSAGNNDNIQ------AVVEAGGLP 52

Query: 422 ---EFIKRGNVLLQQVSSSLLGNLSISDGNKRAV---ASCMGSLIKLMECPKPVGLQEAA 475
              + +K  +  + + +   L NL+    + + +   A  +  L+ L++      +Q+ A
Sbjct: 53  ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNA 111

Query: 476 TDAVLSL 482
           T A+ +L
Sbjct: 112 TGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 11/221 (4%)

Query: 303 LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE 361
           + Q  A  A+ NIA+        + + GAVP+ +Q L+S+ +  +E A   +  +A   E
Sbjct: 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE 189

Query: 362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLG 421
             R  ++Q   L+ L+ L+  S   I  + NA   +S+L    +     S+ +  +  L 
Sbjct: 190 GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA 249

Query: 422 EFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAV-----ASCMGSLIKLMECPKPVGLQEAA 475
           + I        +V       +S +SDG    +         G L++L+       +Q  A
Sbjct: 250 KLI---YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPA 305

Query: 476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKK 516
             +V +++T   ++ +++ +  ++     +L    E + K+
Sbjct: 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346

Length = 526

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 17/210 (8%)

Query: 194 DKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL 253
           +K  AV+   G  G L+ LL  H  + I+  A+ ++  IV+ +D+  +++   G L    
Sbjct: 276 EKIQAVL-DVGIPGRLVELLS-HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFR 333

Query: 254 RILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI 312
            +L +    ++++A   +  IT  + E   A+     +  LI    S     +  A  AI
Sbjct: 334 SLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393

Query: 313 RNI----AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLL-- 366
            N         DI   L  +G +  L   L    N   E A D I  +   GE  RL   
Sbjct: 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG 453

Query: 367 --------IIQERGLQRLMHLIQDSTSSIV 388
                    +++ G    +H +QDS +  +
Sbjct: 454 KNINIYAVYVEKAGGMDAIHGLQDSVNRTI 483

Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.85
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.84
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.72
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.63
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.6
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.58
PRK09687	280	putative lyase; Provisional	99.55
PRK09687	280	putative lyase; Provisional	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.48
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.45
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.42
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.38
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.29
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.27
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.27
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.21
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.18
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.18
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.16
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.1
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.09
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.07
PTZ00429	746	beta-adaptin; Provisional	99.05
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.05
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.02
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.01
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.98
PTZ00429	746	beta-adaptin; Provisional	98.95
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.94
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.86
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.86
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.76
PF05536	543	Neurochondrin: Neurochondrin	98.75
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.71
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.68
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.67
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.62
TIGR02270	410	conserved hypothetical protein. Members are found	98.62
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.61
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.6
TIGR02270	410	conserved hypothetical protein. Members are found	98.55
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.53
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.45
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.44
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.36
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.36
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.32
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.31
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.31
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.22
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.15
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.09
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.07
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.05
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.04
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.01
COG5369	743	Uncharacterized conserved protein [Function unknow	97.99
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.94
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.93
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.9
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.9
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.88
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.88
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.87
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.84
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.76
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.76
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.75
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.74
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.74
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.73
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.71
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.71
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.69
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.67
PF05536	543	Neurochondrin: Neurochondrin	97.66
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.65
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.64
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.64
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.62
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.61
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.59
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.59
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.59
COG5369	743	Uncharacterized conserved protein [Function unknow	97.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.52
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.49
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.4
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.39
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.3
KOG0567	289	consensus HEAT repeat-containing protein [General	97.22
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.19
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.16
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.15
KOG0567	289	consensus HEAT repeat-containing protein [General	97.13
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.1
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.06
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.04
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.03
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.91
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.91
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.87
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.87
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.86
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.81
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.74
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.7
PF05004	309	IFRD: Interferon-related developmental regulator (	96.68
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.65
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.65
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.63
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.56
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.55
PRK14707	2710	hypothetical protein; Provisional	96.55
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.55
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.54
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.53
PRK14707	2710	hypothetical protein; Provisional	96.5
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.43
KOG3036	293	consensus Protein involved in cell differentiation	96.42
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.33
PF05004	309	IFRD: Interferon-related developmental regulator (	96.32
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.29
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.24
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.06
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.03
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.0
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.99
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.9
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.9
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.88
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.81
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.71
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.66
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.65
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.58
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.29
KOG3036	293	consensus Protein involved in cell differentiation	95.28
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.26
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.16
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.03
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.02
KOG2956	516	consensus CLIP-associating protein [General functi	94.92
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.92
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.79
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.78
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.74
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.67
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.66
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.56
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.33
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.3
KOG4653	982	consensus Uncharacterized conserved protein [Funct	94.11
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	94.03
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.88
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.83
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.78
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.72
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.63
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.59
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.57
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.49
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.45
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.35
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.91
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	92.72
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.23
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.86
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	91.83
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.43
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	91.32
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	91.27
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.21
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.78
KOG2956	516	consensus CLIP-associating protein [General functi	90.36
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.33
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.13
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.95
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.82
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	89.56
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.46
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.19
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.16
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.49
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	88.21
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	87.93
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.7
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.44
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	87.12
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.74
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.33
KOG2933	334	consensus Uncharacterized conserved protein [Funct	86.24
KOG2137	700	consensus Protein kinase [Signal transduction mech	85.76
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.3
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.28
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	85.25
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.97
KOG2025	892	consensus Chromosome condensation complex Condensi	84.65
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.64
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	84.58
KOG1243	690	consensus Protein kinase [General function predict	84.47
COG5116	926	RPN2 26S proteasome regulatory complex component [	84.14
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	82.54
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	82.54
KOG2032	533	consensus Uncharacterized conserved protein [Funct	82.45
cd03561	133	VHS VHS domain family; The VHS domain is present i	81.86
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	81.82
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.78
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	81.75
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	81.59
KOG1243	690	consensus Protein kinase [General function predict	81.36
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	81.07
KOG2025	892	consensus Chromosome condensation complex Condensi	80.41
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	80.18

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=335.08  Aligned_cols=400  Identities=22%  Similarity=0.247  Sum_probs=336.7

Q ss_pred             hHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHHHHHh-hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          158 QDLVLFIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAAVVAK-EGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      +.....+..+++.|+++  +++.+..|+..|+.+++++++++..+.+ .|+||.|+.+|. +++..+|+.|+.+|.+++.
T Consensus         9 ~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~   87 (2102)
T PLN03200          9 DGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCK   87 (2102)
T ss_pred             cchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc
Confidence            34456789999999987  8899999999999999999999999985 999999999999 9999999999999999999


Q ss_pred             cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC---ccH-HHHHhcCcHHHHHHHhcCCC---HHHHHH
Q 047123          235 ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP---ENA-WAISAYGGVSVLIEAFRSGT---ALTQSH  307 (579)
Q Consensus       235 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~---~~~-~~i~~~g~i~~Lv~ll~~~~---~~~~~~  307 (579)
                       +++++..++..|++++|+.+|++++++.++.|+++|.+|+.+.   +++ ..++..|+|+.|+.++++++   ..++..
T Consensus        88 -~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~  166 (2102)
T PLN03200         88 -EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL  166 (2102)
T ss_pred             -CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence             8999999999999999999999999999999999999999764   334 34567999999999999874   346788


Q ss_pred             HHHHHHHhhcChhhHH-HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC
Q 047123          308 AVGAIRNIAAVEDIKA-ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS  386 (579)
Q Consensus       308 a~~aL~nLs~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~  386 (579)
                      ++.+|.||+.+.+++. .+++.|+||.++.+++++++.++..++.+|.+++.+.+..+..+++.|+++.|++++.++++ 
T Consensus       167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-  245 (2102)
T PLN03200        167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-  245 (2102)
T ss_pred             HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-
Confidence            8999999999888764 56799999999999999999999999999999998877789999999999999999987653 


Q ss_pred             hHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC---------HHHHHHHHHHHHHhcCC-hh-------
Q 047123          387 IVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN---------VLLQQVSSSLLGNLSIS-DG-------  447 (579)
Q Consensus       387 ~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~---------~~v~~~A~~aL~~L~~~-~~-------  447 (579)
                      ..+++.|+++|+||+.+  +.+..+++.  |+++.|++++.+.+         ...+++|.++|.||+.. +.       
T Consensus       246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~a--GgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~  323 (2102)
T PLN03200        246 VSVRAEAAGALEALSSQSKEAKQAIADA--GGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGE  323 (2102)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHH
Confidence            47999999999999997  778889999  99999999997544         34689999999998842 11       


Q ss_pred             ----hH--H------------------------HHH-------------------------H-----------------H
Q 047123          448 ----NK--R------------------------AVA-------------------------S-----------------C  455 (579)
Q Consensus       448 ----~~--~------------------------~i~-------------------------~-----------------~  455 (579)
                          .+  .                        .+.                         +                 .
T Consensus       324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~  403 (2102)
T PLN03200        324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHA  403 (2102)
T ss_pred             hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Confidence                00  0                        000                         0                 0


Q ss_pred             --HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhH
Q 047123          456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC  533 (579)
Q Consensus       456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~  533 (579)
                        ++.|+.|+ ...+.+++..++.+|++|+..+....+.+.+.++++.|+++|.+++.. .++.++..+.+++...+ +.
T Consensus       404 daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~-iQ~~A~~~L~nLa~~nd-en  480 (2102)
T PLN03200        404 EAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ-QQEYAVALLAILTDEVD-ES  480 (2102)
T ss_pred             cchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCH-HH
Confidence              22344444 344577889999999999988777666776799999999999988766 88999999999986542 37


Q ss_pred             HHHHHHcCchHHHHhhhccCCchHH-HHHHHHh
Q 047123          534 RKRLVAAGAYQHLQKLAETEVPGAK-KVLQRLA  565 (579)
Q Consensus       534 r~~i~~~g~~~~L~~L~~~~~~~ak-~~~~~l~  565 (579)
                      +..|+++|++++|++|+.++++..+ .++..|+
T Consensus       481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~  513 (2102)
T PLN03200        481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLW  513 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8899999999999999998876553 4455554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=322.80  Aligned_cols=382  Identities=20%  Similarity=0.234  Sum_probs=336.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+.+|..++.+.+.+++.+|..++.++++.++.+.+.|++|.|+++|. +++...|+.|+++|++|+..+++++..
T Consensus       405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~-s~s~~iQ~~A~~~L~nLa~~ndenr~a  483 (2102)
T PLN03200        405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG-LSSEQQQEYAVALLAILTDEVDESKWA  483 (2102)
T ss_pred             chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3667899999999999999999999999999999999999999999999999 999999999999999999868889999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA-ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +++.|++|+|+++|.+++..+++.|+|+|.||+.++++... +.+.|++++|+++|++++...++.++++|.|++.+.+.
T Consensus       484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~  563 (2102)
T PLN03200        484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA  563 (2102)
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999987655555 55789999999999999999999999999999875443


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY---FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~---~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .       .++.++.++.+.++.++..++.+|.++....+.   ........|+++.|++++++++.  ..++.|+++|.
T Consensus       564 ~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~--~ikk~Aa~iLs  634 (2102)
T PLN03200        564 A-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE--ETQEKAASVLA  634 (2102)
T ss_pred             h-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH--HHHHHHHHHHH
Confidence            2       447888999999999999999999888542211   22233458999999999999876  89999999999


Q ss_pred             Hcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHH
Q 047123          399 SLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQ  472 (579)
Q Consensus       399 ~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~  472 (579)
                      +++.+  +.+..++..  |++++++.+|++++.+++..++++|.+++  .+++++..+.+.  +++|+++| ++++.++.
T Consensus       635 nL~a~~~d~~~avv~a--gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~  711 (2102)
T PLN03200        635 DIFSSRQDLCESLATD--EIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVA  711 (2102)
T ss_pred             HHhcCChHHHHHHHHc--CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHH
Confidence            99988  667889999  99999999999999999999999999999  555666676666  99999999 78899999


Q ss_pred             HHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh--HHHHHHHcCchHHHHhhh
Q 047123          473 EAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG--CRKRLVAAGAYQHLQKLA  550 (579)
Q Consensus       473 ~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~--~r~~i~~~g~~~~L~~L~  550 (579)
                      +.|+.+|.|++...+++..+.. .++|++|+++|++++++ .|+.|+++|..|+...+.+  ....+...|.+.+|+.++
T Consensus       712 e~Al~ALanLl~~~e~~~ei~~-~~~I~~Lv~lLr~G~~~-~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L  789 (2102)
T PLN03200        712 EQAVCALANLLSDPEVAAEALA-EDIILPLTRVLREGTLE-GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL  789 (2102)
T ss_pred             HHHHHHHHHHHcCchHHHHHHh-cCcHHHHHHHHHhCChH-HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999888885 78899999999999988 8999999999999877532  346667899999999999


Q ss_pred             ccCCchHHH
Q 047123          551 ETEVPGAKK  559 (579)
Q Consensus       551 ~~~~~~ak~  559 (579)
                      +..+.+...
T Consensus       790 ~~~~~~~~~  798 (2102)
T PLN03200        790 NSTDLDSSA  798 (2102)
T ss_pred             hcCCcchhh
Confidence            887655443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=256.91  Aligned_cols=357  Identities=20%  Similarity=0.247  Sum_probs=321.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ..++...++++.+...+..|...+++++-.. ++...|++.+++.+|+.-+. .+..++|..++.+|.+|+. .++++..
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmm-td~vevqcnaVgCitnLaT-~d~nk~k  162 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMM-TDGVEVQCNAVGCITNLAT-FDSNKVK  162 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhc-CCCcEEEeeehhhhhhhhc-cccchhh
Confidence            3567788899999999999999999998644 66677788888888887776 7788999999999999999 8999999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                      +...|++.++.++-++.+..+|.++..+|.+++...+++..++..|+++.|+.++++++..+|+.++.++.|++-...+|
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          323 AALAEEG--AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       323 ~~l~~~g--~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      +.+++.+  .||.|+.++.++++.++-.|..+|.|++.+. .+...+++.|.+|.+++++++...  ......+.+++|+
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVaCIrni  319 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMG--PLILASVACIRNI  319 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcch--hHHHHHHHHHhhc
Confidence            9999888  9999999999999999999999999999865 568889999999999999988776  6777888999999


Q ss_pred             ccc-hhHHHHHhhcCcHHHHHHHHHhcCCHH-HHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHH
Q 047123          401 SLS-DSAARILSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAA  475 (579)
Q Consensus       401 ~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~-v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a  475 (579)
                      +.. -+...+.+.  ||+.+|+.+|+.++.+ +|-.|...|+||+ .++.+++.|.+.  ++.++.++ -+.+..+|...
T Consensus       320 sihplNe~lI~da--gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~-lD~pvsvqsei  396 (550)
T KOG4224|consen  320 SIHPLNEVLIADA--GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL-LDGPVSVQSEI  396 (550)
T ss_pred             ccccCcccceecc--cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH-hcCChhHHHHH
Confidence            998 566678888  9999999999987654 9999999999999 688899999988  99999999 66688999999


Q ss_pred             HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ..++.-|+..+..+..+. +.|.++.|+.++.+.+.+ .+..+..+|.+|+++..
T Consensus       397 sac~a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s~E-v~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  397 SACIAQLALNDNDKEALL-DSGIIPILIPWTGSESEE-VRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHHHHHHHhccccHHHHh-hcCCcceeecccCccchh-hcccHHHHHHhhhhhhH
Confidence            999999988766666665 689999999999998888 78888889999987654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-29  Score=260.49  Aligned_cols=388  Identities=16%  Similarity=0.217  Sum_probs=327.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ....+..+.+++++.+..+..+++.+.+... .....++..|.||.+|.+|....++.+|..|+++|.|++....+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            7788899999999999999999999865332 445666777999999999973455999999999999999978888899


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhcChh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~~~~  320 (579)
                      +++.|++|.|++++.+++..+++.|.|+|+|++. ++.++..+..+|++.+|+.++...+. ....++.|+|.|+|.+..
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999996 56788888899999999999998776 788999999999998543


Q ss_pred             h-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHH
Q 047123          321 I-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS  399 (579)
Q Consensus       321 ~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~  399 (579)
                      - ...-.-..++|.|..++.+.++.+...++|+|.+|+.+..+.-+.+++.|+++.|+.+|...+.  .++..|++++.|
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGN  305 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGN  305 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccc
Confidence            2 1112234588999999999999999999999999998777778899999999999999999887  789999999999


Q ss_pred             cccc--hhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHH
Q 047123          400 LSLS--DSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQE  473 (579)
Q Consensus       400 L~~~--~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~  473 (579)
                      ++.+  ...+.++..  |+++.|..++. +....++.+|++++.|++ .+.+..+++.++  +|.|++++ ...+.++|.
T Consensus       306 IvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l-~~~ef~~rK  382 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL-QTAEFDIRK  382 (514)
T ss_pred             eeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH-hccchHHHH
Confidence            9998  556778888  99999999998 555569999999999999 888889998888  99999999 666699999


Q ss_pred             HHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh---CCCC----hhHHHHHHHcCchHH
Q 047123          474 AATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL---GGGS----NGCRKRLVAAGAYQH  545 (579)
Q Consensus       474 ~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~---~~~~----~~~r~~i~~~g~~~~  545 (579)
                      .|++|++|++.... +...++-+.|.|+++.++|.-.+..+ ...++-++.++-   ....    ......|-+.|+...
T Consensus       383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk  461 (514)
T KOG0166|consen  383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK  461 (514)
T ss_pred             HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence            99999999986543 44455567899999999997777663 444444444433   2111    336778889999999


Q ss_pred             HHhhhccCCchH
Q 047123          546 LQKLAETEVPGA  557 (579)
Q Consensus       546 L~~L~~~~~~~a  557 (579)
                      +..|-.+++.+.
T Consensus       462 iE~LQ~hen~~I  473 (514)
T KOG0166|consen  462 IENLQSHENEEI  473 (514)
T ss_pred             HHHhhccccHHH
Confidence            999999988653

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-30  Score=263.53  Aligned_cols=362  Identities=18%  Similarity=0.222  Sum_probs=316.3

Q ss_pred             HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..|+.+|..|.. .++..+.+|+++|.++++++.+.-+.+++.|+||.++.++. +++..++++|+++|+|++.+.+.+|
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHHH
Confidence            468999999974 56999999999999999999999999999999999999999 9999999999999999999899999


Q ss_pred             HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCccHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          241 KIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAIS-AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~-~v~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      ..+++.|++++|+.++..... ...+.++|+|.||+........+. -..+++.|..++.+.|+++...|+|+|+.|+..
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999998765 788999999999997553222222 256889999999999999999999999999974


Q ss_pred             -hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          319 -EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       319 -~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                       ++.-..+++.|+++.|+.+|...+..++..|+++++|++.+++...+.+++.|+++.|..++..... ..+++.|+++|
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~-~~ikkEAcW~i  346 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK-ESIKKEACWTI  346 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc-hhHHHHHHHHH
Confidence             4555667799999999999999999999999999999999998888999999999999999985543 36999999999


Q ss_pred             HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      .|++.+  +.++.+++.  |+++.|+.+|++++.++|.+|++++.|++  .+++.-.++.+.  +++|+.+| .-.+..+
T Consensus       347 SNItAG~~~qiqaVida--~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~i  423 (514)
T KOG0166|consen  347 SNITAGNQEQIQAVIDA--NLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVKI  423 (514)
T ss_pred             HHhhcCCHHHHHHHHHc--ccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCChHH
Confidence            999998  778899999  99999999999999999999999999999  667777788888  99999999 8888888


Q ss_pred             HHHHHHHHHHhhcCC--------cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123          472 QEAATDAVLSLLTVR--------SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG  529 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~--------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~  529 (579)
                      ...+..+|.++....        ......+.+.+|+.++-.+=.+.+.+ +.+.|..++-+....+
T Consensus       424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~-Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE-IYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH-HHHHHHHHHHHhcCCC
Confidence            999999999996542        23456777889999887766666656 6667777777666544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=8.5e-31  Score=250.90  Aligned_cols=358  Identities=20%  Similarity=0.278  Sum_probs=321.3

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      +..|+..+.+++.+++..++.||.+++.- +.++..+...|++.++.+|-+ +.+..+|.++..+|.++.. ..++|+.+
T Consensus       128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak-skdirvqrnatgaLlnmTh-s~EnRr~L  204 (550)
T KOG4224|consen  128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK-SKDIRVQRNATGALLNMTH-SRENRRVL  204 (550)
T ss_pred             hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc-cchhhHHHHHHHHHHHhhh-hhhhhhhh
Confidence            56778888888899999999999999876 678888899999999999888 9999999999999999999 99999999


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +.+|++|.|+.++++++.++|++++.++.+++.+..++..+++.+  .++.|+.++.+++++++..|..+|+|++...+.
T Consensus       205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y  284 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY  284 (550)
T ss_pred             hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence            999999999999999999999999999999999999999999988  999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                      ...+++.|.+|.+++++++..-......+.|+.|++..+ .....+++.|.+.+|++++..++. ++.+-+|..+||||+
T Consensus       285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dn-EeiqchAvstLrnLA  362 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDN-EEIQCHAVSTLRNLA  362 (550)
T ss_pred             hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCc-hhhhhhHHHHHHHHh
Confidence            999999999999999998887777778889999998865 335677889999999999998876 579999999999999


Q ss_pred             cc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHH
Q 047123          402 LS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATD  477 (579)
Q Consensus       402 ~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~  477 (579)
                      ..  .++..+.++  |+++.+..++..+..++|.....++.-|+.++..+.++.+.  ++.|+.++ .+.+.+++.+++.
T Consensus       363 asse~n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t-~s~s~Ev~gNaAa  439 (550)
T KOG4224|consen  363 ASSEHNVSVIRES--GAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT-GSESEEVRGNAAA  439 (550)
T ss_pred             hhhhhhhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc-CccchhhcccHHH
Confidence            85  788899999  99999999999999999999999999999999999999998  99999999 8899999999999


Q ss_pred             HHHHhhcCCcchhHHHhh----ccc-HHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          478 AVLSLLTVRSNRKELVRD----EKS-VMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       478 aL~~L~~~~~~~~~~~~~----~~~-i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ||.|++...+++.+++.-    .+| -..|++.+.+.+.. .+..+.+.+..|..+..
T Consensus       440 AL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~t-f~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  440 ALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELT-FRHIARWTIQQLLEDHD  496 (550)
T ss_pred             HHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHhCC
Confidence            999999988887776621    123 35688888776655 66677777777776554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=2.5e-28  Score=232.17  Aligned_cols=400  Identities=15%  Similarity=0.181  Sum_probs=328.2

Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      ..+...++.+...|.++|.+.+.+|...++.+.+ ++......+++.|+||.++++++.....-.+-.|+++|.|++...
T Consensus        67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt  146 (526)
T COG5064          67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT  146 (526)
T ss_pred             HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence            3445578999999999999999999999999865 444567888999999999999962555667779999999999966


Q ss_pred             hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH--HHHHHHHHHHH
Q 047123          237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA--LTQSHAVGAIR  313 (579)
Q Consensus       237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~  313 (579)
                      ....+.+++.|++|.++++|.+++.++++.+.|+|.|++. ++.++..+.+.|++.+++.++.+...  .+..++.|.|.
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS  226 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS  226 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence            6667778899999999999999999999999999999996 45678888899999999999987644  88999999999


Q ss_pred             Hhhc--Chh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123          314 NIAA--VED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV  390 (579)
Q Consensus       314 nLs~--~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~  390 (579)
                      ||+.  +|. .-..+..  ++|.|.+++.+.++++...|+|++..++.+..+.-..+.+.|..+.|+++|.+.+.  .++
T Consensus       227 NlcRGknP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa--~iq  302 (526)
T COG5064         227 NLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA--KIQ  302 (526)
T ss_pred             HhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc--ccc
Confidence            9998  332 2223333  78999999999999999999999999998877777888999999999999998776  889


Q ss_pred             HHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccC
Q 047123          391 ENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMEC  465 (579)
Q Consensus       391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~  465 (579)
                      ..|.+.+.|+..+  ...+.++..  |+++.+..+|++....++.+|++.+.|++ .+.+..+++.++  +|+|+++| .
T Consensus       303 tPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll-s  379 (526)
T COG5064         303 TPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL-S  379 (526)
T ss_pred             CHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH-H
Confidence            9999999999998  455678888  99999999999999999999999999999 888888888888  99999999 6


Q ss_pred             CCCHhHHHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC---------CCCh-h
Q 047123          466 PKPVGLQEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG---------GGSN-G  532 (579)
Q Consensus       466 ~~~~~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~---------~~~~-~  532 (579)
                      .-...++..||+|+.|.....-++.   ++.-+.|.|.+|.++|+-.+.. +-+.++.++-+.-.         .+.. .
T Consensus       380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~Ge~d~~~~~~nin~  458 (526)
T COG5064         380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKVGEQDRLRYGKNINI  458 (526)
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhhhhHHHHhccCCccH
Confidence            6678889999999999987644432   3334689999999999877665 33444555544332         2221 2


Q ss_pred             HHHHHHHcCchHHHHhhhccCCc----hHHHHHHHHh
Q 047123          533 CRKRLVAAGAYQHLQKLAETEVP----GAKKVLQRLA  565 (579)
Q Consensus       533 ~r~~i~~~g~~~~L~~L~~~~~~----~ak~~~~~l~  565 (579)
                      ....+-++|++..+-.+-.+.+.    .|.+++++..
T Consensus       459 ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         459 YAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             HHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            33444459999999999888765    3556666554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=9.8e-28  Score=228.10  Aligned_cols=360  Identities=18%  Similarity=0.218  Sum_probs=304.4

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .|+.++..+.. ...-.+.+|+++|.+++++.....+.+++.|+||.+++||. +++.+++++++++|+|++.+++.+|.
T Consensus       115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~~RD  193 (526)
T COG5064         115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEGCRD  193 (526)
T ss_pred             ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchhHHH
Confidence            58889999954 44445789999999999988888888899999999999999 99999999999999999998999999


Q ss_pred             HHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          242 IVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      .+.+.|++.|++.++.+..  ..+.+++.|+|.||+.  +|..-|... ...++.|.+++.+.|+++...|+|++..|+.
T Consensus       194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            9999999999999999874  4778999999999994  444333332 3467999999999999999999999999998


Q ss_pred             Chh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123          318 VED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA  396 (579)
Q Consensus       318 ~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a  396 (579)
                      .+. .-..+.+.|..+.|+.+|.+++..++.-+++.++|+..+++.....+++.|+++.+..+|.+...  .++..||+.
T Consensus       273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke--~irKEaCWT  350 (526)
T COG5064         273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE--NIRKEACWT  350 (526)
T ss_pred             CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh--hhhhhhhee
Confidence            654 45567799999999999999999999999999999998887777888899999999999887766  899999999


Q ss_pred             HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123          397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC--MGSLIKLMECPKP  468 (579)
Q Consensus       397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~  468 (579)
                      |.|+..+  +..+.+++.  +.++.|+++|...+..++.+|++|+.|.+    .-|+.-+++.+.  +.+|..+| +..+
T Consensus       351 iSNITAGnteqiqavid~--nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L-~~~d  427 (526)
T COG5064         351 ISNITAGNTEQIQAVIDA--NLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLL-DVVD  427 (526)
T ss_pred             ecccccCCHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHH-hccC
Confidence            9999988  778899999  99999999999999999999999999998    456777777777  99999999 6666


Q ss_pred             HhHHHHHHHHHHHhhcCCc-----------chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          469 VGLQEAATDAVLSLLTVRS-----------NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~~~-----------~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ..+.+.+..++.|+....+           ....++.+.||+..+-.+-++.+.+ +-..|-+++-.+...++
T Consensus       428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~-iy~KAYsIIe~fFgeeD  499 (526)
T COG5064         428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRT-IYDKAYSIIEKFFGEED  499 (526)
T ss_pred             ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccH-HHHHHHHHHHHHcccch
Confidence            7778888888888864322           1345666678888888777777666 45555566666655443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=9.3e-22  Score=213.12  Aligned_cols=380  Identities=19%  Similarity=0.194  Sum_probs=308.9

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF  244 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~  244 (579)
                      +.+-.+++..+ .....|+..|.+++. ++.....+...|+|+.|+++|+ +++.++...++.+|.+|+. ..+++..|.
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi-~~ENK~~m~  328 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSI-FKENKDEMA  328 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            33334443333 334467778888885 6688888899999999999999 9999999999999999999 999999999


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123          245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAA  324 (579)
Q Consensus       245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~  324 (579)
                      +.|++++|++++++++.+++..+.++|.||+.+++.+..+++.|.+|.|+.+|.+++  .+..+..+|.++|..++.|..
T Consensus       329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~  406 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM  406 (708)
T ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence            999999999999999999999999999999999999999999999999999998654  467799999999999999999


Q ss_pred             HHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          325 LAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       325 l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                      +...+++|.+++++- .+++.+...++..+.|++....+ .+.+.+.|+++.|+.......+     ......++|++.+
T Consensus       407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h  480 (708)
T PF05804_consen  407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQH  480 (708)
T ss_pred             HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhc
Confidence            999999999999874 45566777889999999986644 5778888899999987654433     2244689999998


Q ss_pred             h-hHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-ChhhHHHHHHH--HHHHHHhccCC-CCHhHHHHHHH
Q 047123          404 D-SAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLSI-SDGNKRAVASC--MGSLIKLMECP-KPVGLQEAATD  477 (579)
Q Consensus       404 ~-~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~~-~~~~~~~i~~~--v~~Lv~lL~~~-~~~~v~~~a~~  477 (579)
                      + ..+....   +++..|+.++..+ +.+...++.++|.||+. +.+..+.+.+.  +|.|.++|..+ ..+++...++.
T Consensus       481 ~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  481 DGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             CchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            3 4444433   5888888888664 67888999999999994 44444455444  99999988433 34678888999


Q ss_pred             HHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHhhhccCCc
Q 047123          478 AVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQKLAETEVP  555 (579)
Q Consensus       478 aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~L~~~~~~  555 (579)
                      .++.++.++.....+. +.|.++.|+++|....++ ...-+.+-++..|..++.  .|..|+ +.+++.+|+.|+.+.++
T Consensus       558 ~~gtla~d~~~A~lL~-~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~--tr~~ll~~~~~~~ylidL~~d~N~  634 (708)
T PF05804_consen  558 LLGTLASDPECAPLLA-KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE--TREVLLKETEIPAYLIDLMHDKNA  634 (708)
T ss_pred             HHHHHHCCHHHHHHHH-hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH--HHHHHHhccchHHHHHHHhcCCCH
Confidence            9999997666666555 588999999999876533 266677788888888877  998887 48999999999999998


Q ss_pred             hHHHHHH
Q 047123          556 GAKKVLQ  562 (579)
Q Consensus       556 ~ak~~~~  562 (579)
                      ..++..+
T Consensus       635 ~ir~~~d  641 (708)
T PF05804_consen  635 EIRKVCD  641 (708)
T ss_pred             HHHHHHH
Confidence            8877765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=8.4e-22  Score=213.44  Aligned_cols=322  Identities=15%  Similarity=0.149  Sum_probs=277.8

Q ss_pred             HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH
Q 047123          224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL  303 (579)
Q Consensus       224 ~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  303 (579)
                      .+...|.|++. ++.....+...|+++.|++.|++++.++...+..+|.+|+...+|+..+.+.|+++.|+.++.+++..
T Consensus       268 v~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  268 VAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            35667999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123          304 TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS  383 (579)
Q Consensus       304 ~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~  383 (579)
                      ++..++++|.|||.++++|..|++.|++|.|+.++.++  ..+..++.+|.+++..+ ..|..+...++++.+++++..+
T Consensus       347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~  423 (708)
T PF05804_consen  347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLEN  423 (708)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhC
Confidence            99999999999999999999999999999999999764  45677999999999965 5688999899999999987776


Q ss_pred             CCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHH
Q 047123          384 TSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD-GNKRAVASCMGSLIK  461 (579)
Q Consensus       384 ~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~i~~~v~~Lv~  461 (579)
                      +. ..+...++..+.||+.. .+.+.+.+.  |+++.|+...-.....   ...+.++|++.++ ..+..|.+.+..|++
T Consensus       424 ~~-~~v~~eliaL~iNLa~~~rnaqlm~~g--~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~i~~L~~  497 (708)
T PF05804_consen  424 SE-EEVQLELIALLINLALNKRNAQLMCEG--NGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDFIGDLAK  497 (708)
T ss_pred             CC-ccccHHHHHHHHHHhcCHHHHHHHHhc--CcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            54 35677789999999998 777778877  8889888876444332   2346899999555 677777777999999


Q ss_pred             hccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHHHc
Q 047123          462 LMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLVAA  540 (579)
Q Consensus       462 lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~~~  540 (579)
                      ++...++.+....+.++|.||...+.+...++++.+.++.|.++|.++..+ .....++.++..++.++.  |...+.+.
T Consensus       498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~--~A~lL~~s  575 (708)
T PF05804_consen  498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE--CAPLLAKS  575 (708)
T ss_pred             HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH--HHHHHHhC
Confidence            886777889999999999999988778888888788999999999877433 255667777888888877  99999999


Q ss_pred             CchHHHHhhhccCCchH
Q 047123          541 GAYQHLQKLAETEVPGA  557 (579)
Q Consensus       541 g~~~~L~~L~~~~~~~a  557 (579)
                      |.++.|+.|+....++-
T Consensus       576 gli~~Li~LL~~kqeDd  592 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDD  592 (708)
T ss_pred             ChHHHHHHHHHhhCchH
Confidence            99999999998876553

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.85  E-value=4.3e-19  Score=187.96  Aligned_cols=375  Identities=17%  Similarity=0.204  Sum_probs=292.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh--hh
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--ES  239 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--~~  239 (579)
                      ..+++-+.+|.+.++..+..|...|..+|..+.+.+..+.+.|+|+.||.+|+ +...++|.+|+.+|.||.....  ++
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCccc
Confidence            36789999999999999999999999999999999999999999999999999 9999999999999999997544  48


Q ss_pred             HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC--------------CCHHH
Q 047123          240 RKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS--------------GTALT  304 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--------------~~~~~  304 (579)
                      +-.|.+.++++.++++|+. .+.++++.++.+|+||++++..+..++.. .+..|..-+-.              .+..+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence            8999999999999999997 79999999999999999997776666554 44555553321              12467


Q ss_pred             HHHHHHHHHHhhc-ChhhHHHHHH-cCCHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCh-----hhHHHH----
Q 047123          305 QSHAVGAIRNIAA-VEDIKAALAE-EGAVPVLVQSLT------SSSNLAQENAADCIATLAASGE-----YFRLLI----  367 (579)
Q Consensus       305 ~~~a~~aL~nLs~-~~~~~~~l~~-~g~v~~Lv~lL~------~~~~~v~~~a~~~L~~La~~~~-----~~r~~l----  367 (579)
                      ..++.+||+|++. ..+.|++|.+ .|.|..|+..++      ..+....++++..|.|+...-+     ..+..+    
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~  470 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA  470 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence            8899999999988 7888999984 689999988875      2355788999999999863211     111110    


Q ss_pred             --------------------------------------------HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          368 --------------------------------------------IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       368 --------------------------------------------~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                                                                  ...-++..-+.++. .+.+..+.+.++++|-||+.+
T Consensus       471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~-~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA-LSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH-HhcchHHHHHhhhhHhhhhcc
Confidence                                                        00112233333444 222358999999999999987


Q ss_pred             ------hhHHHH-HhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCC-----Hh
Q 047123          404 ------DSAARI-LSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKP-----VG  470 (579)
Q Consensus       404 ------~~~~~l-~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~-----~~  470 (579)
                            ..+..+ ...  .+++.++++|+.++..+...++.+|.||+.+..++..|+.. ++.|++.|..+.+     .+
T Consensus       550 ~~~~~~~~~~~v~~ke--kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sed  627 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKE--KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSED  627 (717)
T ss_pred             CCcchhHHHhhhhhhc--cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence                  223333 444  78999999999999999999999999999999999999977 9999999954444     78


Q ss_pred             HHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchH
Q 047123          471 LQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQ  544 (579)
Q Consensus       471 v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~  544 (579)
                      +...++..|+++...+ .+.+.+. +.+|+++|+-+..+...+-.-++|-.+|..|=..+.  .|..+...|+-+
T Consensus       628 tv~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e--Lh~~~kk~g~~q  699 (717)
T KOG1048|consen  628 TVRAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE--LHFKLKKKGFKQ  699 (717)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH--HhhhHhhhhhHH
Confidence            8889999999999654 4555555 699999999999875543356677777777765554  555555555443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.84  E-value=1e-18  Score=185.16  Aligned_cols=362  Identities=18%  Similarity=0.208  Sum_probs=281.5

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCccHH
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT---DPENAW  282 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~---~~~~~~  282 (579)
                      +|..+.+|. +.++.+|-+|+..+..+|..+.+.+..+.+.|+|+.|+.+|++.+.+++..||++|.||..   +.+|+.
T Consensus       235 lpe~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            677888898 9999999999999999999888899999999999999999999999999999999999994   336999


Q ss_pred             HHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc---C-------C----CHHHHH
Q 047123          283 AISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT---S-------S----SNLAQE  347 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---~-------~----~~~v~~  347 (579)
                      +|.+.++|+.++.+++. .|.++++.+.++|+||++++..+..++.. ++..|..-+-   +       .    +..+-.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence            99999999999999996 78899999999999999998888887753 4555444431   1       1    246888


Q ss_pred             HHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhcc----CCCChHHHHHHHHHHHHcccc-h----hH-----------
Q 047123          348 NAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQD----STSSIVTVENALLAISSLSLS-D----SA-----------  406 (579)
Q Consensus       348 ~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~----~~~~~~~~~~A~~aL~~L~~~-~----~~-----------  406 (579)
                      ++.+||.|++......|+.+.+ .|.|+.|+.+++.    +..+.+..++++..++||+.. +    ..           
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            9999999999977788999998 8889999988762    223358899999999999875 1    00           


Q ss_pred             -----------------HHHHh------------h--------cCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-C---
Q 047123          407 -----------------ARILS------------S--------TTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-I---  444 (579)
Q Consensus       407 -----------------~~l~~------------~--------~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~---  444 (579)
                                       +....            .        ++.++...+.+| .+.++.+.+.++.+|.||+ .   
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                             00000            0        123444444444 4557789999999999999 2   


Q ss_pred             -ChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch-----hhhh
Q 047123          445 -SDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE-----ALNK  515 (579)
Q Consensus       445 -~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~~k  515 (579)
                       ....+..+...   .+.|+++| ..++..+...++.+|.||+.+..|+..+.  ..+++.|++.|....+     +...
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~~Lp~~~~~~~~sedtv  629 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVRCLPGSGPSTSLSEDTV  629 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHHhCcCCCCCcCchHHHH
Confidence             23455555333   99999999 77789999999999999999988888776  7899999999987765     2133


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc-----hHHHHHHHHh-cCcchhhh
Q 047123          516 KFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP-----GAKKVLQRLA-GNRLKNIF  573 (579)
Q Consensus       516 ~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~-----~ak~~~~~l~-~~~~~~~~  573 (579)
                      ..++..|.++.... ..+.+.+.+.++++.|+-+..+...     -+..++.-|+ ..+|+..|
T Consensus       630 ~~vc~tl~niv~~~-~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~  692 (717)
T KOG1048|consen  630 RAVCHTLNNIVRKN-VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKL  692 (717)
T ss_pred             HHHHHhHHHHHHHh-HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            44455566665433 3478999999999999999877422     1334455565 66666666

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.80  E-value=7.4e-18  Score=184.86  Aligned_cols=355  Identities=17%  Similarity=0.206  Sum_probs=276.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC---CHHHHHHHHHHHHHhhccChhhHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH---QSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~---~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      -.++.+|.+.|.+..   .+.+..+. .+++....+...|+++.|+++|. .+   +.+.+..|-.+|.||..++++.+.
T Consensus       200 ~sllsml~t~D~ee~---ar~fLemS-ss~esCaamR~SgCLpLLvQilH-~~d~~~kear~~A~aALHNIVhSqPD~kr  274 (2195)
T KOG2122|consen  200 NSLLSMLGTDDEEEM---ARTFLEMS-SSPESCAAMRRSGCLPLLVQILH-GPDDEDKEARKRASAALHNIVHSQPDEKR  274 (2195)
T ss_pred             hHHhhhcccCCHHHH---HHHHHHhc-cCchhhHHHHhccchHHHHHHhh-CCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence            356677777776644   44444444 46778888899999999999997 44   367888999999999986665543


Q ss_pred             HHHhcCCHHHHH----------HHHccC-------CHHHH-HHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC----
Q 047123          242 IVFEEGGLGPLL----------RILETG-------SMPLK-EKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS----  299 (579)
Q Consensus       242 ~i~~~g~l~~Lv----------~lL~~~-------~~~v~-~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~----  299 (579)
                      .=.+..++..|=          .++..+       +.+-+ ..|..+|.++++++|.+..+.+.|++.++-+++.-    
T Consensus       275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~m  354 (2195)
T KOG2122|consen  275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEM  354 (2195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            333333333322          222222       12223 36777899999999999999999999999998762    


Q ss_pred             -C-------CHHHHHHHHHHHHHhhc-ChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCChhhHHHHH
Q 047123          300 -G-------TALTQSHAVGAIRNIAA-VEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIATLA-ASGEYFRLLII  368 (579)
Q Consensus       300 -~-------~~~~~~~a~~aL~nLs~-~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La-~~~~~~r~~l~  368 (579)
                       +       ...++.++..+|.||+. +..|+..++ ..|+|+.+|..|.+..+++....+.+|.||+ ..|.+.+..+.
T Consensus       355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr  434 (2195)
T KOG2122|consen  355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR  434 (2195)
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence             1       12689999999999998 455677777 7899999999999999899999999999998 45556788888


Q ss_pred             hcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 047123          369 QERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRG----NVLLQQVSSSLLGN  441 (579)
Q Consensus       369 ~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~----~~~v~~~A~~aL~~  441 (579)
                      +.|.+-.|... +.....  ......+.|||||+.+  ++...|..- .|++..|+.+|.-.    ...+.+.+-.+|+|
T Consensus       435 E~GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaV-DGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  435 ETGSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAV-DGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             hhhhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcc-cchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence            89999988885 555554  5778899999999988  555544332 38999999999543    45778999999999


Q ss_pred             hc----CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhh
Q 047123          442 LS----ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNK  515 (579)
Q Consensus       442 L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k  515 (579)
                      .+    ..++.|+.+.+.  +..|+..| ++.+..+.-++|++||||+..++.-++++++.+.++.|..++++.+.. +.
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM-Ia  589 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM-IA  589 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh-hh
Confidence            88    567788888887  99999999 899999999999999999988888889999999999999999988876 66


Q ss_pred             HHHHHHHHHHhCCC
Q 047123          516 KFPVMVTAAVLGGG  529 (579)
Q Consensus       516 ~~av~~L~~L~~~~  529 (579)
                      +-++++|.+|....
T Consensus       590 ~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  590 MGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhcCC
Confidence            67777788887665

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.1e-16  Score=153.06  Aligned_cols=315  Identities=18%  Similarity=0.210  Sum_probs=266.0

Q ss_pred             hccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123          171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL  249 (579)
Q Consensus       171 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l  249 (579)
                      -.+++.....+++.+|..+....|+.    .+..+...++.+|. ...+.++-....+.+..-|..++.+|+.+++.+++
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            45677788889999999988766654    45677889999886 23457777788888888887689999999999999


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHhcCCCcc----------HHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 047123          250 GPLLRILETG-SMPLKEKAAIGVEAITTDPEN----------AWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA  317 (579)
Q Consensus       250 ~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~  317 (579)
                      +.+.+.|... ...+.+..+++++.|..+++.          ...|++.|++..|++.++.+ ++.+....+.+|..|+.
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            9999777654 445778899999999876653          45678888999999999864 78889999999999999


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCC-CHH---HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSS-SNL---AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~-~~~---v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      .++.+..+.+.|++..+++++.+. ...   ....++..|..++..| +.+..+++.|+.+.++.++..+.+++.+.+.+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            999999999999999999999764 333   5567888888898876 56999999999999999998887778999999


Q ss_pred             HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCC
Q 047123          394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPK  467 (579)
Q Consensus       394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~  467 (579)
                      +.++.-||-.  +....+++.  |+-...++.++...  ..+|.+|+++++|+. .+.++++.+... ++.|++.- .+.
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~--G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A-~~~  427 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEA--GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTA-KAN  427 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhc--chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHH-Hhc
Confidence            9999999987  778889999  99999999997654  478999999999999 888999988888 99999999 788


Q ss_pred             CHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123          468 PVGLQEAATDAVLSLLTVRSNRKELV  493 (579)
Q Consensus       468 ~~~v~~~a~~aL~~L~~~~~~~~~~~  493 (579)
                      +..++..+..||..|..+..++....
T Consensus       428 h~tce~~akaALRDLGc~v~lre~wt  453 (461)
T KOG4199|consen  428 HETCEAAAKAALRDLGCDVYLREEWT  453 (461)
T ss_pred             CccHHHHHHHHHHhcCcchhhHHHhc
Confidence            89999999999999998877766543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.8e-16  Score=151.59  Aligned_cols=282  Identities=13%  Similarity=0.170  Sum_probs=241.3

Q ss_pred             HHHHHh--ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh-----
Q 047123          166 DIFTRL--QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE-----  238 (579)
Q Consensus       166 ~Lv~~L--~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~-----  238 (579)
                      -++.+|  +.++.+.-...+.++..-|-.++.+++.+++.+..+.+.+.|...+..++.....++++.|.. +++     
T Consensus       149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~-dDDiRV~f  227 (461)
T KOG4199|consen  149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLT-DDDIRVVF  227 (461)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC-CCceeeec
Confidence            344444  355677778889999999999999999999999999999866635666677778888998887 443     


Q ss_pred             -----hHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-CHH---HHHHH
Q 047123          239 -----SRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-TAL---TQSHA  308 (579)
Q Consensus       239 -----~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~---~~~~a  308 (579)
                           +...|+.+|++..|++.++.+ ++++....+.+|..|+..++.+..|.+.||+..|+.++.+. +..   ....+
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~  307 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC  307 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence                 346788999999999999986 78889999999999999999999999999999999999873 333   45677


Q ss_pred             HHHHHHhhcChhhHHHHHHcCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC
Q 047123          309 VGAIRNIAAVEDIKAALAEEGAVPVLVQSL--TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS  386 (579)
Q Consensus       309 ~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL--~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~  386 (579)
                      +..|+.|+.++.++..+++.|+.+.++.++  .+.+|.+...++.++.-+|-..++....+++.|+-...++.++.+...
T Consensus       308 lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~  387 (461)
T KOG4199|consen  308 LSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA  387 (461)
T ss_pred             HHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH
Confidence            788899999999999999999999999997  567899999999999999988888888999999999999999998866


Q ss_pred             hHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHH
Q 047123          387 IVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRA  451 (579)
Q Consensus       387 ~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~  451 (579)
                      ..++.+|+.+|+|+...  +++..++..   +++.|+..-+..++.+...|..+|+.|..+.++|+.
T Consensus       388 a~vQrnac~~IRNiv~rs~~~~~~~l~~---GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~  451 (461)
T KOG4199|consen  388 AQVQRNACNMIRNIVVRSAENRTILLAN---GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE  451 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccchHHhc---cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence            79999999999999987  666666664   888999999999999999999999999977776653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.72  E-value=5.6e-14  Score=151.13  Aligned_cols=372  Identities=16%  Similarity=0.189  Sum_probs=287.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      ++..|++.+.+....++..|..+....+  ...+ ..+..+.|...|. ++++.+|..++..|.++...++.....+.+.
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~~~l-~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALS--PDSL-LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            7888888888888888888888875332  1121 5677899999999 9999999999999999998455557777888


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 047123          247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAAL  325 (579)
Q Consensus       247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l  325 (579)
                      +.++.++..+.+++..+...|+.+|.+|+.++.....+...+.+..|..++...+..++..+..++.+++. +++....+
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~  198 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV  198 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999999999999999988888888888889999999988788889999999999987 66777778


Q ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCCh---HHH-HHHHHHHHHcc
Q 047123          326 AEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSI---VTV-ENALLAISSLS  401 (579)
Q Consensus       326 ~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~---~~~-~~A~~aL~~L~  401 (579)
                      .+.|.++.++..+.++|.-++..++.+|..|+. .+.....+.+.|+++.|..++.....++   .+. -.......+++
T Consensus       199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la  277 (503)
T PF10508_consen  199 VNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA  277 (503)
T ss_pred             HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence            889999999999999888999999999999999 4466888999999999999997765422   111 12234555555


Q ss_pred             cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHH-HHH---HHHH----HHhccCCCCHhHHH
Q 047123          402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV-ASC---MGSL----IKLMECPKPVGLQE  473 (579)
Q Consensus       402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i-~~~---v~~L----v~lL~~~~~~~v~~  473 (579)
                      .. ....+...-+.++..+..++.+.++..+..|..+++.++.+.+.+..+ ...   ++..    -... .....++|.
T Consensus       278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~  355 (503)
T PF10508_consen  278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKL  355 (503)
T ss_pred             hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHH
Confidence            53 111222222257778888899999999999999999999888888877 222   3333    3344 445678999


Q ss_pred             HHHHHHHHhhcCCcc---------hhHHHh--hcccHH-HHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHH-c
Q 047123          474 AATDAVLSLLTVRSN---------RKELVR--DEKSVM-RLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVA-A  540 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~---------~~~~~~--~~~~i~-~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~-~  540 (579)
                      .+..+|.++......         .+....  ..+... .++.++..+-++ .+..+..++..++..+-  +.+.|.+ .
T Consensus       356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e-lr~a~~~~l~~l~~~~W--g~~~i~~~~  432 (503)
T PF10508_consen  356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE-LRCAAYRLLQALAAQPW--GQREICSSP  432 (503)
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH-HHHHHHHHHHHHhcCHH--HHHHHHhCc
Confidence            999999999544332         111111  123334 678888877777 89999999999999875  6666664 6


Q ss_pred             CchHHHHh
Q 047123          541 GAYQHLQK  548 (579)
Q Consensus       541 g~~~~L~~  548 (579)
                      |.+.+|.+
T Consensus       433 gfie~lld  440 (503)
T PF10508_consen  433 GFIEYLLD  440 (503)
T ss_pred             cHHhhhcC
Confidence            66666653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=1e-15  Score=168.41  Aligned_cols=319  Identities=17%  Similarity=0.174  Sum_probs=255.3

Q ss_pred             HHHHHHHHhccC---CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH----------HhhccCC-------CHHHH
Q 047123          163 FIRDIFTRLQIG---GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI----------SLLDFHH-------QSSIR  222 (579)
Q Consensus       163 ~v~~Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv----------~LL~~~~-------~~~~~  222 (579)
                      -++.|+.+|+..   +.+.|..|-.+|-++.-..++....=.+..+++.|=          ..+. ..       ..+=+
T Consensus       236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lq-ar~~~~apa~~~H~  314 (2195)
T KOG2122|consen  236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQ-ARGPAIAPASDEHQ  314 (2195)
T ss_pred             chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccchh
Confidence            367888888754   457788899999999765554322222222222222          1222 11       12233


Q ss_pred             H-HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC------------CHHHHHHHHHHHHHhcCC-CccHHHHHh-c
Q 047123          223 E-QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG------------SMPLKEKAAIGVEAITTD-PENAWAISA-Y  287 (579)
Q Consensus       223 ~-~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~------------~~~v~~~aa~~L~~Ls~~-~~~~~~i~~-~  287 (579)
                      . .|+.+|..+++ ++++|+.|-+-|++..+-.++.-.            ...++.++..+|.||++. ..|+..++. .
T Consensus       315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            3 57777889999 999999999999999988877431            346899999999999974 457777765 7


Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhH
Q 047123          288 GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFR  364 (579)
Q Consensus       288 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r  364 (579)
                      |.++.+|..|.+...++....+.+|+||++.  ...+..+.+.|-|-.|+.+ +....+.....++.+||||+.+...++
T Consensus       394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK  473 (2195)
T KOG2122|consen  394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK  473 (2195)
T ss_pred             hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence            8999999999998889999999999999984  3456677789999998887 566677788999999999998777778


Q ss_pred             HHHHh-cCcHHHHHHhhccCC--CChHHHHHHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          365 LLIIQ-ERGLQRLMHLIQDST--SSIVTVENALLAISSLSLS-----DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       365 ~~l~~-~g~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                      ..|.. .|++..|+.+|....  ..-.+.+.|-++|+|.+..     +.++.+...  ..+..|++.|++.+-.+..+++
T Consensus       474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~--NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH--NCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh--hHHHHHHHHhhhcceEEeecch
Confidence            88877 899999999997652  2237889999999999886     556677788  9999999999999999999999


Q ss_pred             HHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          437 SLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       437 ~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      .+||||+ .+++.++++++.  |+.|..++ ++++..+-+.++.+|.||....
T Consensus       552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLI-hSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLI-HSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHhcccHHHHHHHH-hhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999 999999999998  99999999 9999999999999999998765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.70  E-value=1.2e-13  Score=148.55  Aligned_cols=339  Identities=17%  Similarity=0.188  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ...+.+.+...|++.++.+|..++..|..+..+++.....+.+.+.++.++..+. +++..+...|+.+|..++. ++..
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~-~~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLAS-HPEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhC-Cchh
Confidence            3456788899999999999999999999999888887888889999999999999 9999999999999999999 8888


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      .+.++..+.+..|..++...+..+|..+..++.+++. +++....+...|.++.++..+.++|.-+|.+++.+|..|+..
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET  232 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence            8889899999999999999888999999999999984 667788888899999999999999999999999999999999


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCC--CH---H-HHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccCCCChHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSS--SN---L-AQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~--~~---~-v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~~~~~~~~~  391 (579)
                      +.+...+.+.|+++.|..++.+.  ++   . .....+...++++..++.  ..+.. ...+..+.+++.+.+.  ..+.
T Consensus       233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~d~--~~~~  308 (503)
T PF10508_consen  233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLELYPAFLERLFSMLESQDP--TIRE  308 (503)
T ss_pred             hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHhCCCCh--hHHH
Confidence            99999999999999999999543  22   1 333444667777764322  11111 3345556666666665  7899


Q ss_pred             HHHHHHHHcccc-hhHHHHHhhcCcH----HHHHHHHHhcCCHHHHHHHHHHHHHhc--CCh---h----hHHHHHHH--
Q 047123          392 NALLAISSLSLS-DSAARILSSTTSF----IIQLGEFIKRGNVLLQQVSSSLLGNLS--ISD---G----NKRAVASC--  455 (579)
Q Consensus       392 ~A~~aL~~L~~~-~~~~~l~~~~~g~----i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~---~----~~~~i~~~--  455 (579)
                      .|..++..++.. +....+.....+.    +..+.....++..++|..+..++.++-  ..+   +    ..+...+.  
T Consensus       309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~  388 (503)
T PF10508_consen  309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS  388 (503)
T ss_pred             HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence            999999999988 4444441322233    444555567788899999999999994  222   1    12222222  


Q ss_pred             ---HH-HHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhh
Q 047123          456 ---MG-SLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQM  505 (579)
Q Consensus       456 ---v~-~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~l  505 (579)
                         .. .++.++ +.+-+++|.++...|..|+..+...+.+....|.+..|++-
T Consensus       389 ~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr  441 (503)
T PF10508_consen  389 GSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR  441 (503)
T ss_pred             CCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence               44 778888 66679999999999999999988888887655555555443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.63  E-value=1.8e-13  Score=135.17  Aligned_cols=345  Identities=15%  Similarity=0.116  Sum_probs=256.0

Q ss_pred             CHHHHHHHHHHHHHHhccChhh----HHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 047123          175 GVEFKKKALESLLQLLKDDDKS----AAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG  250 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~  250 (579)
                      +..++..+..|+...++ ++..    ++.-+..+++..|.+... +++.++.++..++|+|+|.++.++|..+.+.||-.
T Consensus        55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~ps-S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPS-SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCC-CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            44455666667777764 3322    333356788999999999 99999999999999999999999999999999988


Q ss_pred             HHHHHHccC-------CHHHHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcC-h
Q 047123          251 PLLRILETG-------SMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAV-E  319 (579)
Q Consensus       251 ~Lv~lL~~~-------~~~v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~-~  319 (579)
                      .++++|+.-       +.+....++..|.|-. .+.+.+..+.+.|+++.|...+.-+  +...-+.......|+... .
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            888888752       3455666777788876 4667888999999999999987643  444445555555666542 2


Q ss_pred             h-hHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC---Ch---HHHH
Q 047123          320 D-IKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS---SI---VTVE  391 (579)
Q Consensus       320 ~-~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~---~~---~~~~  391 (579)
                      + ......+...+..+++++.+ -.++..+.+...|+..+..+ ..+-.+.+.|.++.++.+++....   +.   ..-.
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence            2 24445566777788888854 46788899999999998866 568889999999999988876321   00   1122


Q ss_pred             HHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccC---
Q 047123          392 NALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMEC---  465 (579)
Q Consensus       392 ~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~---  465 (579)
                      .++....-|..+ +....+... +.++..+..++.+.+...+..+.-+++|++.++.+...+.+.  +..|+..+..   
T Consensus       292 ~~~el~vllltGDeSMq~L~~~-p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~  370 (604)
T KOG4500|consen  292 RIAELDVLLLTGDESMQKLHAD-PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKD  370 (604)
T ss_pred             hhhhHhhhhhcCchHHHHHhcC-cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            233333333334 555556555 238999999999999999999999999999999999888888  8888887722   


Q ss_pred             -CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123          466 -PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV  525 (579)
Q Consensus       466 -~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L  525 (579)
                       ..+.+++.+++.||.||+...+|+..++. .|..+.++.++....+++ .....+.+..+
T Consensus       371 vdgnV~~qhA~lsALRnl~IPv~nka~~~~-aGvteaIL~~lk~~~ppv-~fkllgTlrM~  429 (604)
T KOG4500|consen  371 VDGNVERQHACLSALRNLMIPVSNKAHFAP-AGVTEAILLQLKLASPPV-TFKLLGTLRMI  429 (604)
T ss_pred             CCccchhHHHHHHHHHhccccCCchhhccc-cchHHHHHHHHHhcCCcc-hHHHHHHHHHH
Confidence             34778899999999999999999999985 888899999998888773 33344434443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.60  E-value=3.6e-13  Score=133.05  Aligned_cols=384  Identities=15%  Similarity=0.090  Sum_probs=277.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC----C---HHHHHHHHHHHHHhhcc
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH----Q---SSIREQAVLALSIIVSA  235 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~----~---~~~~~~A~~aL~~La~~  235 (579)
                      ++..|.....+.+.++-.+..++|+++|.++.++|..+.+.||-..++.+|+ .-    +   .+.-.-+...|.|-..+
T Consensus        88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~-~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLK-PYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhc-cccccCCccHHHHHHHHHHHHHHhhCC
Confidence            4555666666778899999999999999999999999999999777777775 31    2   23444566778887777


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCc-cHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHH
Q 047123          236 NDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITT-DPE-NAWAISAYGGVSVLIEAFRSG-TALTQSHAVG  310 (579)
Q Consensus       236 ~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~-~~~-~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~  310 (579)
                      +++.+.++++.|+++.|...+.-+  +....+.......+|.+ ..+ ......+......+++++.+. .++..+-...
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe  246 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE  246 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence            899999999999999999998765  45555555555555442 112 233344466777788877753 5567788888


Q ss_pred             HHHHhhcChhhHHHHHHcCCHHHHHHHhcC-C-----CH--HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHhhc
Q 047123          311 AIRNIAAVEDIKAALAEEGAVPVLVQSLTS-S-----SN--LAQENAADCIATLAASGEYFRLLIIQER-GLQRLMHLIQ  381 (579)
Q Consensus       311 aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-~-----~~--~v~~~a~~~L~~La~~~~~~r~~l~~~g-~i~~Lv~ll~  381 (579)
                      .|...+.++..+-.+++.|.+..++.+++. .     ++  ..-..++....-+..+|+..+ .+...+ .++.++.++.
T Consensus       247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhc
Confidence            899999999999999999999999988854 1     11  244456666666666776643 344444 8899999999


Q ss_pred             cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123          382 DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKR-----GNVLLQQVSSSLLGNLSISDGNKRAVASC  455 (579)
Q Consensus       382 ~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~-----~~~~v~~~A~~aL~~L~~~~~~~~~i~~~  455 (579)
                      +.+.  .....+.-+|.|+++. +.+..+++.  |++..|+.++..     ++.++|..++.||+|+.....++..|.++
T Consensus       326 S~d~--~l~t~g~LaigNfaR~D~~ci~~v~~--~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~a  401 (604)
T KOG4500|consen  326 SDDS--NLITMGSLAIGNFARRDDICIQLVQK--DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPA  401 (604)
T ss_pred             CCch--hHHHHHHHHHHhhhccchHHHHHHHH--HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcccc
Confidence            8887  8999999999999999 788899999  999999999843     57789999999999999888889999998


Q ss_pred             --HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC-Ch
Q 047123          456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG-SN  531 (579)
Q Consensus       456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~-~~  531 (579)
                        .+.++.++ +...+.+...-...|..+....+ -..++.+...-+..|++.-.+++...+.......+..|-.+. ..
T Consensus       402 GvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k  480 (604)
T KOG4500|consen  402 GVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK  480 (604)
T ss_pred             chHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence              78888888 66677788777777776654433 233444444456778877776664422222222333332221 11


Q ss_pred             hHHHHHHHcCchHHHHhhhccC
Q 047123          532 GCRKRLVAAGAYQHLQKLAETE  553 (579)
Q Consensus       532 ~~r~~i~~~g~~~~L~~L~~~~  553 (579)
                      +.-..+...|++++.+.++..+
T Consensus       481 dv~~tvpksg~ik~~Vsm~t~~  502 (604)
T KOG4500|consen  481 DVILTVPKSGGIKEKVSMFTKN  502 (604)
T ss_pred             hhHhhccccccHHHHHHHHHHh
Confidence            1455666788888877765443

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=5.7e-13  Score=133.10  Aligned_cols=322  Identities=15%  Similarity=0.132  Sum_probs=262.5

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC
Q 047123          222 REQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT  301 (579)
Q Consensus       222 ~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~  301 (579)
                      ...|+..|.|++. +-.....+.....+..|++.|+..+.++-......|-+|+-..+|+..+.+.|.+..|+.+....+
T Consensus       280 Lrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h  358 (791)
T KOG1222|consen  280 LRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH  358 (791)
T ss_pred             HHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence            3457778899999 888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc
Q 047123          302 ALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ  381 (579)
Q Consensus       302 ~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~  381 (579)
                      ++++...+..|.|++.+...+..|+..|.+|.++.++.+.+.  ..-|+..|..++.++ ..+.++....+++.+...+-
T Consensus       359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~  435 (791)
T KOG1222|consen  359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVL  435 (791)
T ss_pred             HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999976542  344667788888765 67889999999999999776


Q ss_pred             cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhcCChh-hHHHHHHHHHH
Q 047123          382 DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLSISDG-NKRAVASCMGS  458 (579)
Q Consensus       382 ~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~~~~~-~~~~i~~~v~~  458 (579)
                      .+.. .++-........|||.. .+.+.+.+.  .++..|.+. ++..++-    -...++|+++++. .+..|.+.|..
T Consensus       436 ~~~~-~~vdl~lia~ciNl~lnkRNaQlvceG--qgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fidyvgd  508 (791)
T KOG1222|consen  436 SGTG-SEVDLALIALCINLCLNKRNAQLVCEG--QGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGD  508 (791)
T ss_pred             hcCC-ceecHHHHHHHHHHHhccccceEEecC--cchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHH
Confidence            6654 24555555555678776 555556665  566666654 4555543    2456899996665 67788888999


Q ss_pred             HHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhh-hhHHHHHHHHHHhCCCChhHHHHH
Q 047123          459 LIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEAL-NKKFPVMVTAAVLGGGSNGCRKRL  537 (579)
Q Consensus       459 Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~av~~L~~L~~~~~~~~r~~i  537 (579)
                      |...+...++...-..|.+.|+||...+-....++++..-||.+-+.|.++..+. .....+..+...+....  |...+
T Consensus       509 La~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~--cA~Ll  586 (791)
T KOG1222|consen  509 LAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD--CARLL  586 (791)
T ss_pred             HHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH--HHHHh
Confidence            9999966667777788889999998888888889999999999999998875432 44555666777777777  99999


Q ss_pred             HHcCchHHHHhhhccCCch
Q 047123          538 VAAGAYQHLQKLAETEVPG  556 (579)
Q Consensus       538 ~~~g~~~~L~~L~~~~~~~  556 (579)
                      ..+|.++.|++|++...++
T Consensus       587 a~a~~i~tlieLL~a~QeD  605 (791)
T KOG1222|consen  587 APAKLIDTLIELLQACQED  605 (791)
T ss_pred             CccccHHHHHHHHHhhccc
Confidence            9999999999999886554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=4e-13  Score=130.15  Aligned_cols=196  Identities=18%  Similarity=0.228  Sum_probs=168.9

Q ss_pred             HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123          201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN  280 (579)
Q Consensus       201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~  280 (579)
                      .+.+.+..|+.+|+.+.+|.+++.+..++++.+. ++.++..+.+.|+++.+..+|.++++.+++.|.++|.|++.+.++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4566788999999845689999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          281 AWAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      +..+-.  .++.+++.+.+  -+..+|..+.++|.||+..++.+..+..  .++.++.++.+++..++.+++.+|.||+.
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            998854  36666664444  3678999999999999988777776654  79999999999999999999999999998


Q ss_pred             CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                      .+ .....+...+++..++.+++.... .+....++..+.|+..+
T Consensus       164 np-~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  164 NP-DMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINEN  206 (254)
T ss_pred             CH-HHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHHh
Confidence            55 456677777899999999988754 36788888999999765

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.2e-12  Score=138.69  Aligned_cols=421  Identities=15%  Similarity=0.133  Sum_probs=286.6

Q ss_pred             cccchhHhhhhhhhhhhhhHHHHHhccCCcCcccccccCCCCCchhHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc
Q 047123          113 MQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIG-GVEFKKKALESLLQLLK  191 (579)
Q Consensus       113 ~~s~~d~~~~~l~~~l~d~~~l~~~gi~~~~~~~~~~~p~~~a~~~~~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~  191 (579)
                      +++.-|.  +.....+.+++.++.  +-.+.   .+       +..++..+|+.|+.+|++. +.+.+..|+++|..++.
T Consensus       176 L~~~~De--s~Qleal~Elce~L~--mgnEe---sL-------s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e  241 (1051)
T KOG0168|consen  176 LQAESDE--SQQLEALTELCEMLS--MGNEE---SL-------SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE  241 (1051)
T ss_pred             ccccCCh--HHHHHHHHHHHHHHh--hcchh---hh-------ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence            4444443  333345556666666  33332   22       2346677999999999875 78999999999999999


Q ss_pred             cChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 047123          192 DDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIG  270 (579)
Q Consensus       192 ~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~  270 (579)
                      --|.....++++++||.|++ |+. -...++.|+++.+|..|++   .....+.++|++...+.+|+..+..+|+.|..+
T Consensus       242 vlP~S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR---~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alai  317 (1051)
T KOG0168|consen  242 VLPRSSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISR---RHPKAILQAGALSAVLSYLDFFSIHAQRVALAI  317 (1051)
T ss_pred             hccchhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHh---hccHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 555 7789999999999999999   666788999999999999999999999999999


Q ss_pred             HHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhcCC---
Q 047123          271 VEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLTSS---  341 (579)
Q Consensus       271 L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~~~---  341 (579)
                      ..|.|.  .++.-..+  ...+|.|..+|+..|.+..+.++.++..++.    .++.-+++...|.|....+++.-.   
T Consensus       318 aaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~  395 (1051)
T KOG0168|consen  318 AANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI  395 (1051)
T ss_pred             HHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence            999994  33333333  3578999999999999999999999988865    345566788999999999998543   


Q ss_pred             -CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC-------------hHHHHHHHHHHHHcccc---h
Q 047123          342 -SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS-------------IVTVENALLAISSLSLS---D  404 (579)
Q Consensus       342 -~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~-------------~~~~~~A~~aL~~L~~~---~  404 (579)
                       +..+....+..|..++++.+...+.+.+.++...|..++...+.+             .++-+..... ..|-..   +
T Consensus       396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~-~eLlp~~p~e  474 (1051)
T KOG0168|consen  396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLI-IELLPCLPVE  474 (1051)
T ss_pred             ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHH-heeecCCccc
Confidence             335777888999999998888889999999998888887654320             1111111111 111111   1


Q ss_pred             ---hH-----HHHHhh-----------------cCcHHHHHHHHHhcCCH---HHHHHHH-HH-HHHhcCChhhHHHHHH
Q 047123          405 ---SA-----ARILSS-----------------TTSFIIQLGEFIKRGNV---LLQQVSS-SL-LGNLSISDGNKRAVAS  454 (579)
Q Consensus       405 ---~~-----~~l~~~-----------------~~g~i~~L~~lL~~~~~---~v~~~A~-~a-L~~L~~~~~~~~~i~~  454 (579)
                         ..     ..++..                 -+.+..+++.-++....   .++..-. .+ -.-|...|+.-+.|..
T Consensus       475 ~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~  554 (1051)
T KOG0168|consen  475 GIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK  554 (1051)
T ss_pred             ceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH
Confidence               00     000000                 00112222222222111   1111100 11 1123356688888888


Q ss_pred             H-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC--cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCCh
Q 047123          455 C-MGSLIKLMECPKPVGLQEAATDAVLSLLTVR--SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSN  531 (579)
Q Consensus       455 ~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~  531 (579)
                      . +|.|+++...+-++.||..|..||..|....  +-.+.++++...-..+-.+|...+..+ -.-|+.+.-.|...=++
T Consensus       555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~v-lVgALQvAEiLmeKlpd  633 (1051)
T KOG0168|consen  555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTV-LVGALQVAEILMEKLPD  633 (1051)
T ss_pred             HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCee-EeehHHHHHHHHHHhHH
Confidence            8 9999999977789999999999999997643  335556655555566777787777663 22222222222211111


Q ss_pred             hHHHHHHHcCchHHHHhhhccCCc
Q 047123          532 GCRKRLVAAGAYQHLQKLAETEVP  555 (579)
Q Consensus       532 ~~r~~i~~~g~~~~L~~L~~~~~~  555 (579)
                      ---+-++.+|++..+.+|....++
T Consensus       634 ~F~~~F~REGV~~~v~~L~~~~~~  657 (1051)
T KOG0168|consen  634 TFSPSFRREGVFHAVKQLSVDSNP  657 (1051)
T ss_pred             HhhhhHhhhhHHHHHHHHhccCCc
Confidence            145778889999999999884433

>PRK09687 putative lyase; Provisional

Probab=99.55  E-value=1.9e-12  Score=128.31  Aligned_cols=254  Identities=14%  Similarity=0.044  Sum_probs=201.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+..|+..|.+.+..+|..|+..|..+-.           ...++.+..+++ ++++.+|..|+.+|+.|.. .+..   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~-~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCS-SKNPIERDIGADILSQLGM-AKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC-Cccc---
Confidence            37889999999999999999999987742           345778888998 9999999999999999986 3222   


Q ss_pred             HHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRI-LETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~l-L~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                        ....++.|..+ +++.++.|+..++.+|.++.......    ....+..+...+.++++.++..++.+|..+..    
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence              12356777766 67789999999999999996432111    12245667778888899999999999976532    


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                            ..+++.|+.++.+.++.++..|+.+|+.+...++         ..++.|+..+.+.+.  .++..|+.+|..+-
T Consensus       158 ------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~--~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 ------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNE--EIRIEAIIGLALRK  220 (280)
T ss_pred             ------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCCh--HHHHHHHHHHHccC
Confidence                  2378999999999999999999999999844332         357888999987776  89999999999875


Q ss_pred             cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      ..           .+++.|+..+++++  ++..++.+|.++.....        ++.|.++++...+..++..+.++|.
T Consensus       221 ~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~a--------~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        221 DK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGDKTL--------LPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             Ch-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHhH--------HHHHHHHHhhCCChhHHHHHHHHHh
Confidence            44           78999999999876  67789999999975322        8999999954678999998888775

>PRK09687 putative lyase; Provisional

Probab=99.53  E-value=2.1e-12  Score=127.92  Aligned_cols=253  Identities=13%  Similarity=0.058  Sum_probs=199.1

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI  284 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i  284 (579)
                      .++.|..+|. +.+..+|..|+.+|..+..           ..+++.+.+++++.++.+|..++++|..|...+..    
T Consensus        24 ~~~~L~~~L~-d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLD-DHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHh-CCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            5888999999 9999999999999999887           56788899999999999999999999999753322    


Q ss_pred             HhcCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123          285 SAYGGVSVLIEA-FRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF  363 (579)
Q Consensus       285 ~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~  363 (579)
                       ....++.|..+ +++.++.++..++.+|.++.......    ...+++.+...+.+.+..++..++.+|..+..     
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----  157 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----  157 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence             22355777776 67789999999999999986532211    11245567777888899999999999976542     


Q ss_pred             HHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          364 RLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       364 r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                            ...++.|+.++.+.++  .++..|+.+|..+....         +.+++.|+.++.+.+..|+..|+.+|.++.
T Consensus       158 ------~~ai~~L~~~L~d~~~--~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 ------EAAIPLLINLLKDPNG--DVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             ------HHHHHHHHHHhcCCCH--HHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence                  3368999999998776  89999999999984331         157788999999999999999999999875


Q ss_pred             CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcC-CCchhhhhHHHHHHH
Q 047123          444 ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD-PKNEALNKKFPVMVT  522 (579)
Q Consensus       444 ~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~k~~av~~L  522 (579)
                      ...        .++.|++.| ...+  ++..++.+|+++..           ...++.|.++++ ..++. ++..++.+|
T Consensus       221 ~~~--------av~~Li~~L-~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~-v~~~a~~a~  277 (280)
T PRK09687        221 DKR--------VLSVLIKEL-KKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNE-IITKAIDKL  277 (280)
T ss_pred             Chh--------HHHHHHHHH-cCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChh-HHHHHHHHH
Confidence            332        299999999 4433  78889999999874           467899999997 44444 677777655


Q ss_pred             H
Q 047123          523 A  523 (579)
Q Consensus       523 ~  523 (579)
                      .
T Consensus       278 ~  278 (280)
T PRK09687        278 K  278 (280)
T ss_pred             h
Confidence            3

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=3.3e-12  Score=123.83  Aligned_cols=217  Identities=16%  Similarity=0.151  Sum_probs=174.4

Q ss_pred             HhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123          285 SAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF  363 (579)
Q Consensus       285 ~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~  363 (579)
                      .+.+-++.|+.+|+. .|+.+++.+..++.|.+.++.++..+.+.|+++.+..++.++++.+++.|+.+|.|++...++ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en-   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN-   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh-
Confidence            445677999999995 689999999999999999999999999999999999999999999999999999999986644 


Q ss_pred             HHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          364 RLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       364 r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      +..+-  ..++.+.+.+.+...+..++..+.++|.||+..+....++.   +.++.++.+|..|+..+|..+.++|.||+
T Consensus        88 ~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            44442  25777777655554334899999999999998755555554   58999999999999999999999999999


Q ss_pred             CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch-hHHHhhcccHHHHHhhcC
Q 047123          444 ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR-KELVRDEKSVMRLMQMLD  507 (579)
Q Consensus       444 ~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~  507 (579)
                      .++.+.+.+..+  +..|+.++....+.++...+...+.|+....... ..+.++...-..|..++.
T Consensus       163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~  229 (254)
T PF04826_consen  163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG  229 (254)
T ss_pred             cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence            999988877777  8899999955567888999999999997654332 222323344445554444

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.48  E-value=2.2e-11  Score=140.29  Aligned_cols=274  Identities=15%  Similarity=0.130  Sum_probs=217.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+..|++.++.+|..|+..|..+.           ..+.++.|+.+|+ ++++.+|..|+.+|..+.. ..     
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~-~~-----  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVE-VL-----  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHh-cc-----
Confidence            3678899999999999999999998874           2446899999999 9999999999999988864 21     


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                          ...+.|...|++.++.+|..++.+|..+...           ....|+..|.+.++.++..|+.+|..+.      
T Consensus       684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~------  742 (897)
T PRK13800        684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVD------  742 (897)
T ss_pred             ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhccc------
Confidence                1235788889999999999999999887532           2356788899999999999999988752      


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                             ..+.|..++.+.++.++..++.+|..+....         ...++.|..++.+.++  .++..|+.+|.++..
T Consensus       743 -------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~--~VR~aA~~aLg~~g~  804 (897)
T PRK13800        743 -------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDP--LVRAAALAALAELGC  804 (897)
T ss_pred             -------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCH--HHHHHHHHHHHhcCC
Confidence                   2345677889999999999999999886532         2236788888887765  899999999998864


Q ss_pred             chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123          403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSL  482 (579)
Q Consensus       403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L  482 (579)
                      ..          ..+..+...|.+.+..||..|+.+|..+...+.        ++.|+.+| ++++..||..|+.+|..+
T Consensus       805 ~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a--------~~~L~~~L-~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        805 PP----------DDVAAATAALRASAWQVRQGAARALAGAAADVA--------VPALVEAL-TDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             cc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccch--------HHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence            31          234567888999999999999999998864333        78999999 788999999999999997


Q ss_pred             hcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123          483 LTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA  523 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~  523 (579)
                      ..          +....+.|.+.|++.+.. ++..++.+|.
T Consensus       866 ~~----------~~~a~~~L~~al~D~d~~-Vr~~A~~aL~  895 (897)
T PRK13800        866 PG----------DPAARDALTTALTDSDAD-VRAYARRALA  895 (897)
T ss_pred             CC----------CHHHHHHHHHHHhCCCHH-HHHHHHHHHh
Confidence            22          133467788888888777 7777776654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.5e-10  Score=116.08  Aligned_cols=366  Identities=16%  Similarity=0.146  Sum_probs=269.6

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 047123          178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE  257 (579)
Q Consensus       178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~  257 (579)
                      ..+.|+..|.+++. +-..-..+.....|..||+.|+ ..+.+........|..|+- ..+++..+.+.|.+..|+++..
T Consensus       279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLd-r~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALD-RSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHc-ccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcC
Confidence            34567888888874 3344455677888999999999 7788888888899999999 9999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHH
Q 047123          258 TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQS  337 (579)
Q Consensus       258 ~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~l  337 (579)
                      ...++++......|.||+.+...+..+++.|.+|.|..++.+++.  ...|...|..++.++..+..+....+|+.++..
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~  433 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD  433 (791)
T ss_pred             CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988765  446778889999999999988888899999887


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccch--hHHHHHhhc
Q 047123          338 LTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLSD--SAARILSST  413 (579)
Q Consensus       338 L~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~~--~~~~l~~~~  413 (579)
                      +-+ .+..+-...+....|+|.... ..+.+.+..++..|+.. ++..+.      .-...++|++.++  ....++   
T Consensus       434 v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~------lLmK~vRniSqHeg~tqn~Fi---  503 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL------LLMKVVRNISQHEGATQNMFI---  503 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch------HHHHHHHHhhhccchHHHHHH---
Confidence            643 344455555555567776332 23455666678777764 333332      2345688888873  333343   


Q ss_pred             CcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCC-hhhHHHHHHH--HHHHHHhccC-CCCHhHHHHHHHHHHHhhcCCcc
Q 047123          414 TSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSIS-DGNKRAVASC--MGSLIKLMEC-PKPVGLQEAATDAVLSLLTVRSN  488 (579)
Q Consensus       414 ~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~-~~~~~~i~~~--v~~Lv~lL~~-~~~~~v~~~a~~aL~~L~~~~~~  488 (579)
                       ..+..|...+...+ ...-.++...+.||... -+-.+.+.+.  ||-+-..|.. ....++.....-+++.+++...+
T Consensus       504 -dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~c  582 (791)
T KOG1222|consen  504 -DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDC  582 (791)
T ss_pred             -HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHH
Confidence             35777777776654 45667889999999944 4444444444  7777766622 23456677777778888877666


Q ss_pred             hhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHhhhccCCchHHHHHH
Q 047123          489 RKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQKLAETEVPGAKKVLQ  562 (579)
Q Consensus       489 ~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~L~~~~~~~ak~~~~  562 (579)
                      ...+. ..+.|+.++++|.....+ ....+.+-+...+...+.  .|..|+ +...-.+|+.|....+...+|+++
T Consensus       583 A~Lla-~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr~~miket~~~AylIDLMHDkN~eiRkVCD  655 (791)
T KOG1222|consen  583 ARLLA-PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TRRLMIKETALGAYLIDLMHDKNAEIRKVCD  655 (791)
T ss_pred             HHHhC-ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HHHHHHhhccchHHHHHHHhcccHHHHHHHH
Confidence            66555 488999999999865432 134444555555555554  666665 677788999999998887776654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.42  E-value=7e-11  Score=136.09  Aligned_cols=269  Identities=14%  Similarity=0.168  Sum_probs=212.6

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW  282 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~  282 (579)
                      ...++.|+..|+ ++++.+|..|+..|..+..           .+.++.|++.|++.+..++..|+.+|..+.....   
T Consensus       620 ~~~~~~L~~~L~-D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLA-DPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhc-CCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            346889999999 9999999999999998876           5678999999999999999999999998853211   


Q ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123          283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY  362 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~  362 (579)
                            ..+.|...|.+.++.++..++.+|..+..           +-...++..|.+.++.++..++.+|..+-.    
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~----  743 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDD----  743 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccC----
Confidence                  23578888999999999999999987642           223467788999999999999999887521    


Q ss_pred             hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123          363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL  442 (579)
Q Consensus       363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L  442 (579)
                                .+.|..++.+.+.  .++..++.+|..+....       .  ..++.|..++++.++.+|..|+.+|.++
T Consensus       744 ----------~~~l~~~l~D~~~--~VR~~aa~aL~~~~~~~-------~--~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ----------VESVAGAATDENR--EVRIAVAKGLATLGAGG-------A--PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ----------cHHHHHHhcCCCH--HHHHHHHHHHHHhcccc-------c--hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                      2345667777665  89999999999887541       1  3467888999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH
Q 047123          443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT  522 (579)
Q Consensus       443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L  522 (579)
                      ...+..       ++.++..| .+++..||..|+.+|..+..           ...++.|+.+|.+++.. ++..++.+|
T Consensus       803 g~~~~~-------~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~-VR~~A~~aL  862 (897)
T PRK13800        803 GCPPDD-------VAAATAAL-RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLD-VRKAAVLAL  862 (897)
T ss_pred             CCcchh-------HHHHHHHh-cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHH-HHHHHHHHH
Confidence            744321       35678888 66789999999999998653           45678999999988877 888998888


Q ss_pred             HHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHH
Q 047123          523 AAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK  559 (579)
Q Consensus       523 ~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~  559 (579)
                      ..+..++           ...+.|.++++.++++.++
T Consensus       863 ~~~~~~~-----------~a~~~L~~al~D~d~~Vr~  888 (897)
T PRK13800        863 TRWPGDP-----------AARDALTTALTDSDADVRA  888 (897)
T ss_pred             hccCCCH-----------HHHHHHHHHHhCCCHHHHH
Confidence            8873222           2466777888877776544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.38  E-value=6.2e-10  Score=114.83  Aligned_cols=347  Identities=14%  Similarity=0.097  Sum_probs=243.0

Q ss_pred             HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhh-----CcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc
Q 047123          162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKE-----GNVGYLISLLDFHHQSSIREQAVLALSIIVSA  235 (579)
Q Consensus       162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-----g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~  235 (579)
                      .++..++.+|+. ...+.....+.-+.++..+++.....+.+.     +...+++.+|. .++.-++..|+..|..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~-~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN-RQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc-CCchhHHHHHHHHHHHHHhc
Confidence            467888888864 567778888999999999888877777654     56788888998 88999999999999988752


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHH
Q 047123          236 NDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGAI  312 (579)
Q Consensus       236 ~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL  312 (579)
                      .+.........-.++-+...|+++ +...+..++.+|..|...++.|..+.+.++++.|+.+++..  +.+++..++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            222211111111334556666654 46778888899999999999999999999999999999863  458999999999


Q ss_pred             HHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCC------hhhHHHHHhcCcHHHHHHhhccCCC
Q 047123          313 RNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASG------EYFRLLIIQERGLQRLMHLIQDSTS  385 (579)
Q Consensus       313 ~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~------~~~r~~l~~~g~i~~Lv~ll~~~~~  385 (579)
                      +-|+.+++....+...+.|+.++++++.. -+.+...++.+|.|+...+      ......+++.|.++.+-.+....-.
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            99999988877888889999999999654 5679999999999998743      1234566666766555444444433


Q ss_pred             ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-C----hhhHHHHHHH----H
Q 047123          386 SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-S----DGNKRAVASC----M  456 (579)
Q Consensus       386 ~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~-~----~~~~~~i~~~----v  456 (579)
                      ++++.+..-..-..|-..  .+.+     .-......=+.+|.-         =|.-.+ +    .++...|.+.    +
T Consensus       292 DedL~edl~~L~e~L~~~--~k~l-----tsfD~Y~~El~sg~L---------~WSp~H~se~FW~EN~~kf~~~~~~ll  355 (429)
T cd00256         292 DEDLTDDLKFLTEELKNS--VQDL-----SSFDEYKSELRSGRL---------HWSPVHKSEKFWRENADRLNEKNYELL  355 (429)
T ss_pred             cHHHHHHHHHHHHHHHHH--HHHc-----CCHHHHHHHHhcCCc---------cCCCCCCCchHHHHHHHHHHhcchHHH
Confidence            334433221111111100  0000     001111111111110         011111 1    2455555555    7


Q ss_pred             HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      ..|+++|+.++++.+..-||.=++.+++..+..+.++.+-|+=..++++|.+++++ ++..|+-++..|.
T Consensus       356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~-Vr~eAL~avQklm  424 (429)
T cd00256         356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN-VRYEALLAVQKLM  424 (429)
T ss_pred             HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence            89999996677888889999999999999999999998888989999999999888 8888888777664

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.29  E-value=8e-11  Score=101.48  Aligned_cols=116  Identities=28%  Similarity=0.456  Sum_probs=107.8

Q ss_pred             HHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-
Q 047123          200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-  278 (579)
Q Consensus       200 i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-  278 (579)
                      +.+.|+++.|+++++ ++++.+++.++.+|.+++..++++...+++.|+++.++++|.++++.++..++++|.+|+.++ 
T Consensus         3 ~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            568899999999999 999999999999999999955999999999999999999999999999999999999999766 


Q ss_pred             ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      +....+.+.|+++.|++++.+++..+++.++++|.|++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            56677788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.27  E-value=1.2e-10  Score=100.38  Aligned_cols=118  Identities=30%  Similarity=0.376  Sum_probs=109.1

Q ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123          283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE  361 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~  361 (579)
                      .+.+.|+++.|++++.++++.++..++.+|.+++.. ++....+.+.|+++.++.++.++++.++..++++|.+++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467889999999999999999999999999999996 8888899999999999999999999999999999999999887


Q ss_pred             hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      ..+..+.+.|+++.+++++...+.  .+++.++.+|++|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~--~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNE--DIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCH--HHHHHHHHHHHHhhC
Confidence            778888899999999999998865  899999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.27  E-value=5.7e-09  Score=109.12  Aligned_cols=386  Identities=13%  Similarity=0.082  Sum_probs=258.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhhHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+++..+.+.+++....|..-..++..+.++....+++.|.++.|+.++. ..  .++.+.....++..+..........
T Consensus        12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s-~e~~s~~~k~~~~~llns~f~~eqd~v~s   90 (678)
T KOG1293|consen   12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLS-LEDGSTELKNGFAVLLNSLFLGEQDKVDS   90 (678)
T ss_pred             HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhcc-ccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence            46677788889999899999999998888888888999999999999987 44  4666656666777777657778889


Q ss_pred             HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHH---HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAW---AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~---~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      +.+.+.++.|+++|.+.+ ..+.+...+++.++......+.   .......+..+..+...+.......-+....+++..
T Consensus        91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc
Confidence            999999999999999988 8899999999999985443322   222334555555555535555666667777788888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH---HHhcCChhhHHHH----HhcCcHH--HHHHhhccCCCChHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIA---TLAASGEYFRLLI----IQERGLQ--RLMHLIQDSTSSIVT  389 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~---~La~~~~~~r~~l----~~~g~i~--~Lv~ll~~~~~~~~~  389 (579)
                      ++.+..+.+.|+.+.+.-++..-+...+..+..++.   ++...++.....+    .+.|..+  .+.+++++...  ..
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~--s~  248 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF--SE  248 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc--cH
Confidence            888888889999998877777777789999999999   6666555543322    2344443  33344444443  33


Q ss_pred             HHHHHHHHHHcccc--------------hh---------------------------------------HHHHHhhcCcH
Q 047123          390 VENALLAISSLSLS--------------DS---------------------------------------AARILSSTTSF  416 (579)
Q Consensus       390 ~~~A~~aL~~L~~~--------------~~---------------------------------------~~~l~~~~~g~  416 (579)
                      +-.++.+|.++...              +.                                       .....+.  ..
T Consensus       249 ~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~--~~  326 (678)
T KOG1293|consen  249 RLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE--AT  326 (678)
T ss_pred             HHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh--hh
Confidence            34444444433321              00                                       0000000  11


Q ss_pred             HHHHHHHH----------------------------------------------------hcCCHHHHHHHHHHHHHhcC
Q 047123          417 IIQLGEFI----------------------------------------------------KRGNVLLQQVSSSLLGNLSI  444 (579)
Q Consensus       417 i~~L~~lL----------------------------------------------------~~~~~~v~~~A~~aL~~L~~  444 (579)
                      ++...+++                                                    ...+.+....|+..+.+++.
T Consensus       327 ~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr  406 (678)
T KOG1293|consen  327 LKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR  406 (678)
T ss_pred             hhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence            11111111                                                    01222333344444444442


Q ss_pred             C-hhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHH
Q 047123          445 S-DGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV  521 (579)
Q Consensus       445 ~-~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~  521 (579)
                      + ...+..+...  +.+|++++ ..++..++..+.++|+|+.....+.+...-..|||..+..++.+.++. .+..++++
T Consensus       407 sV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n-~r~~~~~~  484 (678)
T KOG1293|consen  407 SVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN-SRANSLWV  484 (678)
T ss_pred             HHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch-HHHHHHHH
Confidence            2 2233333333  88999999 777888999999999999999888776666799999999999998888 88999999


Q ss_pred             HHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchH
Q 047123          522 TAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGA  557 (579)
Q Consensus       522 L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~a  557 (579)
                      |.++.-+.++.-.......=....|..+.+.++.+.
T Consensus       485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V  520 (678)
T KOG1293|consen  485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV  520 (678)
T ss_pred             HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence            999997776334444433334444445555555443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.2e-09  Score=114.46  Aligned_cols=404  Identities=17%  Similarity=0.119  Sum_probs=274.1

Q ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHHHh-ccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          163 FIRDIFTRLQIG-GVEFKKKALESLLQLL-KDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       163 ~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      -+..|+.-|+.. ++..+.+|+.-|.++. ..+++....+--..+||.|+.||+...+.+++..|+++|.+|+..-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            467788888766 8888889988888764 46777777666788999999999944569999999999999999889999


Q ss_pred             HHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--
Q 047123          241 KIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--  317 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--  317 (579)
                      ..++++++||.|+.-|-. ..+++.+++..+|..|+..  .-.++.+.|++...+.++..-+..+|..|+.+..|+|.  
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999987766 5789999999999999963  34678899999999999999999999999999999987  


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHhhccCC--CChHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA---SGEYFRLLIIQERGLQRLMHLIQDST--SSIVTVEN  392 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~---~~~~~r~~l~~~g~i~~Lv~ll~~~~--~~~~~~~~  392 (579)
                      .++.-..+++  ++|.|..+|+..+....+.++-|+..++.   .+++.-+++...|.+....+++....  -+..+...
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            3444445555  79999999999999999999999999875   34444577888999988888876543  12356777


Q ss_pred             HHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhc-CCh-h-------
Q 047123          393 ALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN--------------VLLQQVSSSLLGNLS-ISD-G-------  447 (579)
Q Consensus       393 A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~--------------~~v~~~A~~aL~~L~-~~~-~-------  447 (579)
                      .++.|..+|.+  .....+...  ++...|..+|...+              +.-+......+..|- ..+ +       
T Consensus       404 vIrmls~msS~~pl~~~tl~k~--~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~  481 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKL--DIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDC  481 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHh--hHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhh
Confidence            78888888887  345556666  78888888775322              122222223333332 111 1       


Q ss_pred             -hHHHHHHH------------------HHHHHHhcc--CCC---CHhHHH-HHHHHHHHhhc-CCcchhHHHhhcccHHH
Q 047123          448 -NKRAVASC------------------MGSLIKLME--CPK---PVGLQE-AATDAVLSLLT-VRSNRKELVRDEKSVMR  501 (579)
Q Consensus       448 -~~~~i~~~------------------v~~Lv~lL~--~~~---~~~v~~-~a~~aL~~L~~-~~~~~~~~~~~~~~i~~  501 (579)
                       ....+...                  -....++++  +.+   .-.++. ....+=..+.. .++-.+.|++  ..++.
T Consensus       482 ~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~--~llpV  559 (1051)
T KOG0168|consen  482 SLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK--DLLPV  559 (1051)
T ss_pred             hhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH--HHHHH
Confidence             00000000                  011112221  000   000000 00000011111 1122334442  46788


Q ss_pred             HHhhcCCCchhhhhHHHHHHHHHHhCCCC-hhHHHHHHHcCchHHHHhhhccCCc----hHHHHHHHHhcCcchhhhcc
Q 047123          502 LMQMLDPKNEALNKKFPVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQKLAETEVP----GAKKVLQRLAGNRLKNIFSR  575 (579)
Q Consensus       502 Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~~L~~~~~~----~ak~~~~~l~~~~~~~~~~~  575 (579)
                      |++...+.-...++.+.+.+|.++....+ +..+..+.+..+-.++-.++..++.    +|-.+.+-| --||..+|+.
T Consensus       560 LveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiL-meKlpd~F~~  637 (1051)
T KOG0168|consen  560 LVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEIL-MEKLPDTFSP  637 (1051)
T ss_pred             HHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHH-HHHhHHHhhh
Confidence            89999877655588888888888876553 2345666678888888888777654    333333322 3566677654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=9.7e-09  Score=112.54  Aligned_cols=331  Identities=18%  Similarity=0.172  Sum_probs=220.8

Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123          158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      +.....+..+..-|++.++..|..|+.+|.++.  +++...     ..++.+.+++. ++++.+|..|+.++..+...++
T Consensus        75 ~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   75 ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCH
Confidence            334556788888899999999999999999987  444432     34788889999 9999999999999999987444


Q ss_pred             hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      +..   ... .++.+.++|.+.++.++..|+.++..+..+++... -.-...++.|..++...++..+...+..|..++.
T Consensus       147 ~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            432   222 58999999999999999999999999911111100 1113344555666678899999999999988877


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      .......-  ...++.+..++++.++.+...++.++..+....+      .-..+++.|..++.+.+.  .++..++..|
T Consensus       222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~--nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDP--NVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSH--HHHHHHHHHH
T ss_pred             CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccc--hhehhHHHHH
Confidence            43322210  3456777788887778888888888888776433      235567888888885544  7888888888


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHH
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAAT  476 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~  476 (579)
                      ..++... ...+. .    ....+..+. +.+..++..+..+|..++. +++...+   ++.|.+.+.+..+.+++..++
T Consensus       292 ~~l~~~~-~~~v~-~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~I---l~eL~~~l~~~~d~~~~~~~i  361 (526)
T PF01602_consen  292 SQLAQSN-PPAVF-N----QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEI---LDELLKYLSELSDPDFRRELI  361 (526)
T ss_dssp             HHHCCHC-HHHHG-T----HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHC--HHHHHHHH
T ss_pred             HHhhccc-chhhh-h----hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhH---HHHHHHHHHhccchhhhhhHH
Confidence            8888763 11111 1    111223444 7788888888888888873 3333333   344445452333567888888


Q ss_pred             HHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          477 DAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       477 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      ..++.++...+...     ...+..+++++....+. .....+..+..+..
T Consensus       362 ~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~-~~~~~~~~i~~ll~  406 (526)
T PF01602_consen  362 KAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDY-VSNEIINVIRDLLS  406 (526)
T ss_dssp             HHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGG-CHCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchH-----HHHHHHHHHhhhhcccc-ccchHHHHHHHHhh
Confidence            88888876432211     23456777777765555 34445555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=8.1e-09  Score=113.16  Aligned_cols=335  Identities=17%  Similarity=0.146  Sum_probs=234.1

Q ss_pred             chhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc
Q 047123          156 HKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA  235 (579)
Q Consensus       156 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~  235 (579)
                      ..+-....++.+...+.++++.+|..|+.++..+...+|+...   .. .++.+.++|. ++++.++..|+.++..+ ..
T Consensus       108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HC
T ss_pred             ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-cc
Confidence            3444556788889999999999999999999999887666432   22 6899999998 99999999999999999 21


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      ++.....+ -...+..|.+++...++-.+..+.+.|..++........  ....++.+..++++.++.+...++.++..+
T Consensus       182 ~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            22221111 123355566666778999999999999998854322220  045678888999888889999999999988


Q ss_pred             hcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123          316 AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL  395 (579)
Q Consensus       316 s~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~  395 (579)
                      ...+.     .-..+++.|+.++.+.++.++..++.+|..++...+   ..+ .  .....+..+...++ ..++..++.
T Consensus       259 ~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v-~--~~~~~~~~l~~~~d-~~Ir~~~l~  326 (526)
T PF01602_consen  259 SPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAV-F--NQSLILFFLLYDDD-PSIRKKALD  326 (526)
T ss_dssp             SSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHH-G--THHHHHHHHHCSSS-HHHHHHHHH
T ss_pred             hcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhh-h--hhhhhhheecCCCC-hhHHHHHHH
Confidence            87665     333468899999999999999999999999988551   222 2  23333344453332 489999999


Q ss_pred             HHHHcccchhHHHHHhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHH
Q 047123          396 AISSLSLSDSAARILSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQE  473 (579)
Q Consensus       396 aL~~L~~~~~~~~l~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~  473 (579)
                      .|..++...+...+       +..|...+ +..+++++..+...+..++ ..+.....+   ++.+++++ ...+..+..
T Consensus       327 lL~~l~~~~n~~~I-------l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~---v~~l~~ll-~~~~~~~~~  395 (526)
T PF01602_consen  327 LLYKLANESNVKEI-------LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY---VDTLLKLL-EISGDYVSN  395 (526)
T ss_dssp             HHHHH--HHHHHHH-------HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH---HHHHHHHH-HCTGGGCHC
T ss_pred             HHhhcccccchhhH-------HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH---HHHHHHhh-hhccccccc
Confidence            99999988666554       44467777 4558889999999999998 333222211   67788888 444566677


Q ss_pred             HHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      .+...+.++....+..+.     ..+..|++.+..-.....+..+++++...+.
T Consensus       396 ~~~~~i~~ll~~~~~~~~-----~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~  444 (526)
T PF01602_consen  396 EIINVIRDLLSNNPELRE-----KILKKLIELLEDISSPEALAAAIWILGEYGE  444 (526)
T ss_dssp             HHHHHHHHHHHHSTTTHH-----HHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred             hHHHHHHHHhhcChhhhH-----HHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence            777888888765444322     2367777777764433367777777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=6.4e-08  Score=107.46  Aligned_cols=378  Identities=12%  Similarity=0.130  Sum_probs=238.9

Q ss_pred             HHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123          166 DIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF  244 (579)
Q Consensus       166 ~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~  244 (579)
                      .++..+++. .+.+|.+-++.+..+++..-.. +   =.+.++.|.+-.+ ++++..|+.|+.+|..+.....+.-...+
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~---WPell~~L~q~~~-S~~~~~rE~al~il~s~~~~~~~~~~~~~  157 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-K---WPELLQFLFQSTK-SPNPSLRESALLILSSLPETFGNTLQPHL  157 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-c---hHHHHHHHHHHhc-CCCcchhHHHHHHHHhhhhhhccccchhH
Confidence            455555544 4567777788888887643221 1   1345666666667 89999999999999998872222111110


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHh-cCcHHHHHH----HhcCCCHHHHHHHHHHHHHhhcC
Q 047123          245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISA-YGGVSVLIE----AFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~----ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                       ....+.|.+-+.+++..++..+++++...+... .++...-. ...+|.++.    .+..++.+.-..+..+|..+...
T Consensus       158 -~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~  236 (1075)
T KOG2171|consen  158 -DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES  236 (1075)
T ss_pred             -HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence             122344445555556569999999999988433 33333332 234455554    44567777777888888877763


Q ss_pred             hh--hHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCC-------
Q 047123          319 ED--IKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTS-------  385 (579)
Q Consensus       319 ~~--~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~-------  385 (579)
                      ..  .+..+.+  ++...+....+.  ++.+|..|+.+|..++..-+..++....  ...++.++.++.....       
T Consensus       237 ~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  237 EPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             chHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            32  2333333  555555555444  6789999999999998764332222222  3345666665532211       


Q ss_pred             -------ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-H
Q 047123          386 -------SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-M  456 (579)
Q Consensus       386 -------~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v  456 (579)
                             .......|.++|-.++.+=.-+.+.-   -+++.+-.++.+.+..-|..+.++|..++ ...+......+. +
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il  391 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKIL  391 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                   12356678888888887611111222   24566777789999999999999999999 555544444444 8


Q ss_pred             HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHH
Q 047123          457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKR  536 (579)
Q Consensus       457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~  536 (579)
                      +..+..| .+.++.||.+|+.|++.++.+..---...-.+..++.|+..+++.....++..|++++.+++..-.    +.
T Consensus       392 ~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~----~~  466 (1075)
T KOG2171|consen  392 PIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD----KS  466 (1075)
T ss_pred             HHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc----HH
Confidence            9999999 888999999999999999987543222222467778899999887665588888888998876543    44


Q ss_pred             HHH---cCchH-HHHhhhccCCchHHH
Q 047123          537 LVA---AGAYQ-HLQKLAETEVPGAKK  559 (579)
Q Consensus       537 i~~---~g~~~-~L~~L~~~~~~~ak~  559 (579)
                      +++   .+.+. .+.-|..++.+..++
T Consensus       467 ~l~pYLd~lm~~~l~~L~~~~~~~v~e  493 (1075)
T KOG2171|consen  467 ILEPYLDGLMEKKLLLLLQSSKPYVQE  493 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            443   22333 333355566665543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.1e-07  Score=105.63  Aligned_cols=315  Identities=14%  Similarity=0.115  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHh
Q 047123          159 DLVLFIRDIFTRL----QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSII  232 (579)
Q Consensus       159 ~~~~~v~~Lv~~L----~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~L  232 (579)
                      ..+..+|.++..+    +.|+.+.-..++.+|.+++...++..+-.. ...+..-++... +.  +..+|..|+.+|..+
T Consensus       199 ~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~-n~~l~~~~R~~ALe~ivs~  276 (1075)
T KOG2171|consen  199 KFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAK-NKELENSIRHLALEFLVSL  276 (1075)
T ss_pred             HHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhh-cccccHHHHHHHHHHHHHH
Confidence            3455666666555    467877788999999999987776654433 223444455554 33  488999999999999


Q ss_pred             hccChhhHHHHHhc--CCHHHHHHHHccCC----------------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH
Q 047123          233 VSANDESRKIVFEE--GGLGPLLRILETGS----------------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLI  294 (579)
Q Consensus       233 a~~~~~~~~~i~~~--g~l~~Lv~lL~~~~----------------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv  294 (579)
                      +..-+...+.....  ..++.++..+....                ......|.++|-.++.+-..+..  -.-..+.+-
T Consensus       277 ~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~  354 (1075)
T KOG2171|consen  277 SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALE  354 (1075)
T ss_pred             HHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHH
Confidence            88323332222222  24555555553321                11345566677777643211111  122345566


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 047123          295 EAFRSGTALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG  372 (579)
Q Consensus       295 ~ll~~~~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~  372 (579)
                      .++++.+..-+.+++.+|..++...  ..+..+  ..+++.++..+.+.++.||..|+.+++.++.+-...-+.-..+..
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l  432 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL  432 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence            6788999999999999998887632  222222  247788888899999999999999999999854332233334566


Q ss_pred             HHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHH-HHHHHHhcCCHHHHHHHHHHHHHhc--CCh
Q 047123          373 LQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFII-QLGEFIKRGNVLLQQVSSSLLGNLS--ISD  446 (579)
Q Consensus       373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~-~L~~lL~~~~~~v~~~A~~aL~~L~--~~~  446 (579)
                      ++.|+..+++... +.++.+|+.++.|+...   +.....+.   +.+. .|..+++++.+.+|+.++.+|...+  ...
T Consensus       433 ~~aL~~~ld~~~~-~rV~ahAa~al~nf~E~~~~~~l~pYLd---~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  433 PPALIALLDSTQN-VRVQAHAAAALVNFSEECDKSILEPYLD---GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             cHHHHHHhcccCc-hHHHHHHHHHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            7788888776654 58999999999999876   44455555   4666 5555678899999999999999998  344


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCHhHHH---HHHHHHHHhh
Q 047123          447 GNKRAVASCMGSLIKLMECPKPVGLQE---AATDAVLSLL  483 (579)
Q Consensus       447 ~~~~~i~~~v~~Lv~lL~~~~~~~v~~---~a~~aL~~L~  483 (579)
                      ....++..-+|.|.+.|.+.++.+.|.   ...+++.-++
T Consensus       509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            455555555999999886655455444   4444444443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=9.4e-08  Score=99.86  Aligned_cols=422  Identities=15%  Similarity=0.137  Sum_probs=263.2

Q ss_pred             cccchhHhhhhhhhhhhhhHHHHHh--ccCCcCcccccccCCCCCchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 047123          113 MQSDLDIANTSLSNHLHDLDLLLRS--GVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLL  190 (579)
Q Consensus       113 ~~s~~d~~~~~l~~~l~d~~~l~~~--gi~~~~~~~~~~~p~~~a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~  190 (579)
                      .+...+-+-+.+-..++|.+-++|.  |++-..   +++.-+.  +.=  ...++.|.++|.+.+.....-|..+|..+|
T Consensus        84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITT---I~s~~~~--~~w--pelLp~L~~~L~s~d~n~~EgA~~AL~KIc  156 (885)
T KOG2023|consen   84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITT---IASTGGL--QHW--PELLPQLCELLDSPDYNTCEGAFGALQKIC  156 (885)
T ss_pred             ChHHHHHHHHHHHhhccCchHHHHhhhhheeee---eeccccc--ccc--hhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence            4445566777888999999999992  433221   0010000  111  236889999999999889999999999999


Q ss_pred             ccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccCCHHHHH
Q 047123          191 KDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETGSMPLKE  265 (579)
Q Consensus       191 ~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~  265 (579)
                      .++.+....-.    -.-.+|.++++.+ ++++.+|..|+.++...-- .. ....+.. ...+..+..+-.+.+++||.
T Consensus       157 EDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~-~~-~qal~~~iD~Fle~lFalanD~~~eVRk  233 (885)
T KOG2023|consen  157 EDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFII-IQ-TQALYVHIDKFLEILFALANDEDPEVRK  233 (885)
T ss_pred             hhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheee-cC-cHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence            87765543311    1236889999999 9999999999999887655 21 1222222 23566777777778999999


Q ss_pred             HHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHH--cCCHHHHHHHhcCCCH
Q 047123          266 KAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAE--EGAVPVLVQSLTSSSN  343 (579)
Q Consensus       266 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~--~g~v~~Lv~lL~~~~~  343 (579)
                      +.|+++..|...-..+..-.-.++++.++...++.|..+--.||.....++..+-.+..+..  ...||.|++-+...+.
T Consensus       234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~  313 (885)
T KOG2023|consen  234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD  313 (885)
T ss_pred             HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence            99999999985433333223357888888888888888888999988888887754444432  3466666654421110


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHHHhcCChhhHHHH
Q 047123          344 --------------------------------------------------------LAQENAADCIATLAASGEYFRLLI  367 (579)
Q Consensus       344 --------------------------------------------------------~v~~~a~~~L~~La~~~~~~r~~l  367 (579)
                                                                              .+|...+.+|--|+.        +
T Consensus       314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------v  385 (885)
T KOG2023|consen  314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------V  385 (885)
T ss_pred             cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------h
Confidence                                                                    123333333333322        1


Q ss_pred             HhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          368 IQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       368 ~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      .....++.++-    .|.+...  .+++.++-+++.++.+ ..+-++..-+..++.|+.+|.+..+-||...++.|.+.+
T Consensus       386 f~~elL~~l~PlLk~~L~~~~W--~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys  462 (885)
T KOG2023|consen  386 FGDELLPILLPLLKEHLSSEEW--KVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS  462 (885)
T ss_pred             hHHHHHHHHHHHHHHHcCcchh--hhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence            22333444444    4445555  7899999999999886 111122221136788899999999999999999999998


Q ss_pred             ---CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCc---hhhhhHH
Q 047123          444 ---ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKN---EALNKKF  517 (579)
Q Consensus       444 ---~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~~k~~  517 (579)
                         .+++..+.+..-+..|++.+ -+++..||++||.|+.-+-...        .+.-|+.|-.+|+.-.   ...-++.
T Consensus       463 ~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A--------~~eLVp~l~~IL~~l~~af~kYQ~KN  533 (885)
T KOG2023|consen  463 KWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEA--------GEELVPYLEYILDQLVFAFGKYQKKN  533 (885)
T ss_pred             hhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHHHHHHhhcc
Confidence               34444456666666666655 4667899999999998875321        1122333333333211   0101111


Q ss_pred             ---HHHHHHHHhCCCC-hhHHHHHHHcCchHHHH-h--hhccCCchHHHHHHHHh
Q 047123          518 ---PVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQ-K--LAETEVPGAKKVLQRLA  565 (579)
Q Consensus       518 ---av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~-~--L~~~~~~~ak~~~~~l~  565 (579)
                         .--++.+|+.+-. .-+.+..++- .+++|+ +  ++..++.+.=-++||++
T Consensus       534 LlILYDAIgtlAdsvg~~Ln~~~Yiqi-LmPPLi~KW~~lsd~DKdLfPLLEClS  587 (885)
T KOG2023|consen  534 LLILYDAIGTLADSVGHALNKPAYIQI-LMPPLIEKWELLSDSDKDLFPLLECLS  587 (885)
T ss_pred             eehHHHHHHHHHHHHHHhcCcHHHHHH-hccHHHHHHHhcCcccchHHHHHHHHH
Confidence               1223444543321 0023444443 455555 3  56777778888899887

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.09  E-value=9.1e-09  Score=104.48  Aligned_cols=218  Identities=18%  Similarity=0.163  Sum_probs=165.7

Q ss_pred             cCCHHHHHHHHHHHHHHhccChhhHHHHHh------hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          173 IGGVEFKKKALESLLQLLKDDDKSAAVVAK------EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~------~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      +.+.+.....+..+.++..+++.....+..      .....+++++++ .+|..++..|+..|..+.. ....+..-...
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~-~~~~~~~~~~~  145 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLS-QGPKRSEKLVK  145 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHT-STTT--HHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHH-cCCccccchHH
Confidence            578889999999999999999877777664      236888999999 8999999999999999987 44443333336


Q ss_pred             CCHHHHHHHHccC----CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh------c-CCCHHHHHHHHHHHHHh
Q 047123          247 GGLGPLLRILETG----SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF------R-SGTALTQSHAVGAIRNI  315 (579)
Q Consensus       247 g~l~~Lv~lL~~~----~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll------~-~~~~~~~~~a~~aL~nL  315 (579)
                      +.++.++..+.+.    +.+++..++.+|.+|...++.+..+.+.++++.++.++      . ..+.+++.+++.+++-|
T Consensus       146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            6788888888863    45677999999999999999999999999999999999      2 23458999999999999


Q ss_pred             hcChhhHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123          316 AAVEDIKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATLAASGEY-FRLLIIQERGLQRLMHLIQDSTSSIVTVEN  392 (579)
Q Consensus       316 s~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~La~~~~~-~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~  392 (579)
                      +.+++....+...+.|+.|+.+++. ..+.+...++.++.|+...++. ....++..|+++.+-.+....-.++++.+.
T Consensus       226 SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  226 SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999999999999999999954 4678999999999999976653 677778888777777666655444555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.09  E-value=7.9e-08  Score=100.71  Aligned_cols=363  Identities=11%  Similarity=0.074  Sum_probs=245.9

Q ss_pred             HHHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChh
Q 047123          162 LFIRDIFTRLQI--GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       162 ~~v~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~  238 (579)
                      ..++.+..+++.  +..+.+.+....+..+..+.......+.+.+..+.|+++|. .++ ..+.+..++++.++...++.
T Consensus        51 GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs-~sD~~~~le~~l~~lR~Ifet~~~  129 (678)
T KOG1293|consen   51 GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLS-ESDSLNVLEKTLRCLRTIFETSKY  129 (678)
T ss_pred             cchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhc-CcchHhHHHHHHHHHHHHHhcccc
Confidence            457788888875  45677778888888888888899999999999999999999 887 88999999999999873322


Q ss_pred             h--HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH---
Q 047123          239 S--RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR---  313 (579)
Q Consensus       239 ~--~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~---  313 (579)
                      .  .........+..+.-++..........-+....+++..++.+.....+|+.+.+.-++...+...|..+..+++   
T Consensus       130 q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~  209 (678)
T KOG1293|consen  130 QDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGD  209 (678)
T ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccc
Confidence            2  22233344555555555535555666666677778877788888888998888887777777888999999988   


Q ss_pred             HhhcCh-hhHHH----HHHcCCHH--HHHHHhcCCCHHHHHHHHHHHHHHhcCC-------------hhh----------
Q 047123          314 NIAAVE-DIKAA----LAEEGAVP--VLVQSLTSSSNLAQENAADCIATLAASG-------------EYF----------  363 (579)
Q Consensus       314 nLs~~~-~~~~~----l~~~g~v~--~Lv~lL~~~~~~v~~~a~~~L~~La~~~-------------~~~----------  363 (579)
                      ++..++ .....    ..+.|+.+  .+.+++++++...+..++.|+.++...+             +..          
T Consensus       210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i  289 (678)
T KOG1293|consen  210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI  289 (678)
T ss_pred             eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence            666543 33222    33455555  3445556665555566666655553221             000          


Q ss_pred             ----------------------------HHHHHhcCcHHHHHHhhccC--------------------------------
Q 047123          364 ----------------------------RLLIIQERGLQRLMHLIQDS--------------------------------  383 (579)
Q Consensus       364 ----------------------------r~~l~~~g~i~~Lv~ll~~~--------------------------------  383 (579)
                                                  .....+...++..++++..+                                
T Consensus       290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~  369 (678)
T KOG1293|consen  290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL  369 (678)
T ss_pred             eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence                                        00000111112222221110                                


Q ss_pred             ------------------CCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          384 ------------------TSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       384 ------------------~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                                        ..+......|+-++.+++..  .-+..+-  +..+..+|++++..++..++..+..+|+|+.
T Consensus       370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll~dp~~~i~~~~lgai~NlV  447 (678)
T KOG1293|consen  370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLLMDPEIMIMGITLGAICNLV  447 (678)
T ss_pred             HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence                              01223344445555555444  1111122  2378889999999999999999999999999


Q ss_pred             -CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcc-cHHHHHhhcCCCchhhhhHHHH
Q 047123          444 -ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEK-SVMRLMQMLDPKNEALNKKFPV  519 (579)
Q Consensus       444 -~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~~~k~~av  519 (579)
                       .....+..|.+.  |+.+..++ .+.+..+|..+.++|++++-...+...+....+ +-..++.+..+++.+ +++.+.
T Consensus       448 mefs~~kskfl~~ngId~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~-Vqeq~f  525 (678)
T KOG1293|consen  448 MEFSNLKSKFLRNNGIDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWA-VQEQCF  525 (678)
T ss_pred             hhcccHHHHHHHcCcHHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHH-HHHHHH
Confidence             666778888777  99999999 888899999999999999977666544443333 344566777777777 899999


Q ss_pred             HHHHHHhCCC
Q 047123          520 MVTAAVLGGG  529 (579)
Q Consensus       520 ~~L~~L~~~~  529 (579)
                      ..+.+|+++.
T Consensus       526 qllRNl~c~~  535 (678)
T KOG1293|consen  526 QLLRNLTCNS  535 (678)
T ss_pred             HHHHHhhcCc
Confidence            9999999874

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.07  E-value=2.1e-08  Score=101.80  Aligned_cols=226  Identities=15%  Similarity=0.166  Sum_probs=162.2

Q ss_pred             CcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChhhHHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 047123          204 GNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDESRKIVFE------EGGLGPLLRILETGSMPLKEKAAIGVEAITT  276 (579)
Q Consensus       204 g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~  276 (579)
                      +.+..++.+|+.. ++.++....+..+..+..+++...+.+..      .....+++++++.++..++..++..|..|..
T Consensus        55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3577777888744 67899999999999988856666666654      2378999999999999999999999999986


Q ss_pred             CCccHHHHHhcCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-----cC--CCHHH
Q 047123          277 DPENAWAISAYGGVSVLIEAFRS----GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-----TS--SSNLA  345 (579)
Q Consensus       277 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-----~~--~~~~v  345 (579)
                      .......-...+.++.++..+.+    .+...+..++.+|.+|...++.|..+.+.|+++.++.++     .+  .+..+
T Consensus       135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54443333335666888877765    345678999999999999999999999999999999999     22  24579


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHH
Q 047123          346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGE  422 (579)
Q Consensus       346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~  422 (579)
                      +.+++.|++.|+..+ .....+.+.+.++.|+++++.... +++...++.+|.||... .  ....++..  |+++.+-.
T Consensus       215 ~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~K-EKvvRv~la~l~Nl~~~~~~~~~~~mv~~--~~l~~l~~  290 (312)
T PF03224_consen  215 QYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIK-EKVVRVSLAILRNLLSKAPKSNIELMVLC--GLLKTLQN  290 (312)
T ss_dssp             HHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--S-HHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhccc-chHHHHHHHHHHHHHhccHHHHHHHHHHc--cHHHHHHH
Confidence            999999999999854 557778888899999999988774 79999999999999988 3  67788887  66666655


Q ss_pred             HHhc--CCHHHHH
Q 047123          423 FIKR--GNVLLQQ  433 (579)
Q Consensus       423 lL~~--~~~~v~~  433 (579)
                      +...  .|+++.+
T Consensus       291 L~~rk~~Dedl~e  303 (312)
T PF03224_consen  291 LSERKWSDEDLTE  303 (312)
T ss_dssp             HHSS--SSHHHHH
T ss_pred             HhcCCCCCHHHHH
Confidence            5533  3555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PTZ00429 beta-adaptin; Provisional

Probab=99.05  E-value=1.5e-06  Score=96.65  Aligned_cols=330  Identities=12%  Similarity=0.062  Sum_probs=223.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+.++-+.|++++...+..|+..+...+..+.+.      ..+.+..++++. +.+.+++.-..-.+.+.+..+++.. .
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pela-l  104 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKA-L  104 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHH-H
Confidence            4677778888888888999988887776444322      123556677888 8899999988888888887343322 1


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                      +    ++..|.+=+.+.++.+|..|.++++++-... ...     -.+..+.+.+.+.++.++..|+.++.++-....  
T Consensus       105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--  172 (746)
T PTZ00429        105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--  172 (746)
T ss_pred             H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence            2    3778888888899999999999999876521 111     134667778888999999999999999865322  


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      ..+.+.|.++.|..++.+.++.+..+|+.+|..+...++..  .-...+.+..|+..+...++  ..+.....+|....-
T Consensus       173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~E--W~Qi~IL~lL~~y~P  248 (746)
T PTZ00429        173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNE--WGQLYILELLAAQRP  248 (746)
T ss_pred             ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHhcCC
Confidence            23345678889999999999999999999999998654331  11234445666666655554  666666666644221


Q ss_pred             chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123          403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV  479 (579)
Q Consensus       403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL  479 (579)
                      .+...  . .  ..+..+...|++.++.|...|++++.++..  +++..+.+... ..+|+.++  +.+++++..+...+
T Consensus       249 ~~~~e--~-~--~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~--ss~~eiqyvaLr~I  321 (746)
T PTZ00429        249 SDKES--A-E--TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS--RRDAETQYIVCKNI  321 (746)
T ss_pred             CCcHH--H-H--HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHHHH
Confidence            11111  1 2  467778888889999999999999999983  34544444433 46777776  34678999988888


Q ss_pred             HHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      .-+....+   .++..  -+..+.-..+  ++..+|...+.+|..|+...+
T Consensus       322 ~~i~~~~P---~lf~~--~~~~Ff~~~~--Dp~yIK~~KLeIL~~Lane~N  365 (746)
T PTZ00429        322 HALLVIFP---NLLRT--NLDSFYVRYS--DPPFVKLEKLRLLLKLVTPSV  365 (746)
T ss_pred             HHHHHHCH---HHHHH--HHHhhhcccC--CcHHHHHHHHHHHHHHcCccc
Confidence            77776442   22221  1222222222  223368888888888876554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.2e-08  Score=106.23  Aligned_cols=318  Identities=14%  Similarity=0.071  Sum_probs=210.3

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh----cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE----EGGLGPLLRILETGSMPLKEKAAIGVEAITTDP  278 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~----~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~  278 (579)
                      ..++|.|+++|+ +++...+|-|..+|..++.++.+.-+.=+.    .-.+|.++++.+++++.+|..|..++....-..
T Consensus       127 pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLD-SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            457899999999 999999999999999999954443222111    136899999999999999999999988766432


Q ss_pred             ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      .....+.=...++.|+.+-.+.++.+|++.|.++..|......+..---.++|+-++...++.++++.-.|++....+|.
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            22222222446788888888899999999999998886643222211123466666666678888999999999999998


Q ss_pred             CChhhHHHHHh--cCcHHHHHHhhccCCCCh-------------------------------------------------
Q 047123          359 SGEYFRLLIIQ--ERGLQRLMHLIQDSTSSI-------------------------------------------------  387 (579)
Q Consensus       359 ~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~-------------------------------------------------  387 (579)
                      .. -.+..+..  ...+|.|++-+.....+.                                                 
T Consensus       286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            65 44444433  456666665332211100                                                 


Q ss_pred             -----HHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHH
Q 047123          388 -----VTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLI  460 (579)
Q Consensus       388 -----~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv  460 (579)
                           .+|...+.+|--|+.- -...++..   .++.|-+.|.+.+-.+|+.+.-|++.++  ........+.+-+|.|+
T Consensus       365 ~~~dWNLRkCSAAaLDVLanv-f~~elL~~---l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~  440 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLANV-FGDELLPI---LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLL  440 (885)
T ss_pred             ccccccHhhccHHHHHHHHHh-hHHHHHHH---HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence                 1222222222222211 11112221   3444444556667789999999999998  33344444444499999


Q ss_pred             HhccCCCCHhHHHHHHHHHHHhhcC--CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          461 KLMECPKPVGLQEAATDAVLSLLTV--RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       461 ~lL~~~~~~~v~~~a~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      .+| +++.+-||.-.|+.|+..+.-  ...+.++.  ...+..|++.+-+++.. ++++|+++++.|-....
T Consensus       441 ~~L-~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~-VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  441 SLL-DDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKK-VQEAACSAFATLEEEAG  508 (885)
T ss_pred             HHh-ccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHhcc
Confidence            999 888999999999999888642  12233333  23456666666667777 89999999988865543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.02  E-value=1.1e-07  Score=98.49  Aligned_cols=274  Identities=12%  Similarity=0.110  Sum_probs=197.1

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      ..++.+|+.++.-....|+..|..+...++.........-....|...++ ++ +...+..++.+|..|.. .+++|..+
T Consensus       104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~-~~~~~~~~~~~v~~L~~LL~-~~~~R~~f  181 (429)
T cd00256         104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLN-NITNNDYVQTAARCLQMLLR-VDEYRFAF  181 (429)
T ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhh-ccCCcchHHHHHHHHHHHhC-CchHHHHH
Confidence            45566788888889999999999997654433222222224556777776 54 47888899999999999 99999999


Q ss_pred             HhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-
Q 047123          244 FEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAAVE-  319 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~~~-  319 (579)
                      .+.+++++|+.+|+..  +...+..++-+++-|+.+++........+.|+.|+++++.. -.++.+-++.+|+|+...+ 
T Consensus       182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~  261 (429)
T cd00256         182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV  261 (429)
T ss_pred             HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence            9999999999999874  56789999999999999888777787899999999999875 4578889999999998732 


Q ss_pred             ------hhHHHHHHcCCHHHHHHHhcC--CCHHHHHHHH-------HHHHHHhcCChhhH--------------------
Q 047123          320 ------DIKAALAEEGAVPVLVQSLTS--SSNLAQENAA-------DCIATLAASGEYFR--------------------  364 (579)
Q Consensus       320 ------~~~~~l~~~g~v~~Lv~lL~~--~~~~v~~~a~-------~~L~~La~~~~~~r--------------------  364 (579)
                            .....|++.|..+.+-.+-..  .++++.+..-       ..+..+++.++...                    
T Consensus       262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence                  234567777776655444432  3454433322       22233333222111                    


Q ss_pred             ---HHHHhc--CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHH-HHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123          365 ---LLIIQE--RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAAR-ILSSTTSFIIQLGEFIKRGNVLLQQVSSS  437 (579)
Q Consensus       365 ---~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~-l~~~~~g~i~~L~~lL~~~~~~v~~~A~~  437 (579)
                         ..+-++  ..+..|+++++.+++ +.....||.=|+.++.. +..+. +-..  |+-..+.+++.+.+++|+.+|..
T Consensus       342 EN~~kf~~~~~~llk~L~~iL~~s~d-~~~laVAc~Dige~vr~~P~gr~i~~~l--g~K~~vM~Lm~h~d~~Vr~eAL~  418 (429)
T cd00256         342 ENADRLNEKNYELLKILIHLLETSVD-PIILAVACHDIGEYVRHYPRGKDVVEQL--GGKQRVMRLLNHEDPNVRYEALL  418 (429)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcCCC-cceeehhhhhHHHHHHHCccHHHHHHHc--CcHHHHHHHhcCCCHHHHHHHHH
Confidence               122222  245888888865443 46778888889998887 44444 4445  88889999999999999999999


Q ss_pred             HHHHhc
Q 047123          438 LLGNLS  443 (579)
Q Consensus       438 aL~~L~  443 (579)
                      ++..|-
T Consensus       419 avQklm  424 (429)
T cd00256         419 AVQKLM  424 (429)
T ss_pred             HHHHHH
Confidence            988774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.8e-06  Score=92.20  Aligned_cols=318  Identities=19%  Similarity=0.170  Sum_probs=240.1

Q ss_pred             HHHHHHHHHhccCC-HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChh-
Q 047123          162 LFIRDIFTRLQIGG-VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDE-  238 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~-  238 (579)
                      ..|+.|+.++.+.. .+.|+.|+..|..+++   +|+..+...| +++|++.|+.+ .|+++...++..+.++.. +++ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~-~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTS-HDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh-cCcc
Confidence            37999999998764 6889999999999974   6777776665 78888888623 369999999999999887 442 


Q ss_pred             ------hH----------HHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHh-cCcHHHHHHHhc
Q 047123          239 ------SR----------KIV-FEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISA-YGGVSVLIEAFR  298 (579)
Q Consensus       239 ------~~----------~~i-~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~-~g~i~~Lv~ll~  298 (579)
                            .+          +.+ ...+-|..++..++..+..||..+...|.+|-.  ..+.+..+.. .-+|..|+.+|.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  11          223 245789999999999999999999999999874  3467777766 459999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCC--C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 047123          299 SGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSS--S--NLAQENAADCIATLAASGEYFRLLIIQERGL  373 (579)
Q Consensus       299 ~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~--~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i  373 (579)
                      +....+|-.++..|..+.. ++.+++-++-++++..|+.++...  .  --|.+.|+..|.||-..+...+..+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            9999999999999999998 455566666789999999999532  2  2488999999999998888888888899999


Q ss_pred             HHHHHhhccCC--------CCh---HHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcC--CHHHH
Q 047123          374 QRLMHLIQDST--------SSI---VTVENALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRG--NVLLQ  432 (579)
Q Consensus       374 ~~Lv~ll~~~~--------~~~---~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~--~~~v~  432 (579)
                      +.|.++|....        .+.   .....++.+++.+...        .+...+...  +.+..|..++-+.  ..+++
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss--~ll~~Lc~il~~~~vp~dIl  334 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSS--HLLDVLCTILMHPGVPADIL  334 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc--chHHHHHHHHcCCCCcHhHH
Confidence            99997764321        111   1223345555665553        223455666  7788777777554  55888


Q ss_pred             HHHHHHHHHhc-CChhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          433 QVSSSLLGNLS-ISDGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       433 ~~A~~aL~~L~-~~~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      ..+.-++.+.. .+..++..|...            +-.++.+.....+...|.++..++.++....
T Consensus       335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            89999999998 777888888876            2234445534557888999999988887654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.98  E-value=5.2e-07  Score=90.28  Aligned_cols=343  Identities=15%  Similarity=0.111  Sum_probs=237.9

Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHH------hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVA------KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~------~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      .++-.++.++..- .++...-.+..+.++.+++......+.      ..-.-...+.+|. ..+.-+.+.+.+++..++.
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la~  143 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLAC  143 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHHH
Confidence            3677888888654 466677778888888877765544443      2234677889998 8888999989999998887


Q ss_pred             cChhhHHHHHhcC-CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHH
Q 047123          235 ANDESRKIVFEEG-GLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS--GTALTQSHAVG  310 (579)
Q Consensus       235 ~~~~~~~~i~~~g-~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~  310 (579)
                       ...++-...+-. ...-|-.++.+ .+++-...++++|..+...++.|..+...+|+..++..+.+  .+..+|.+.+-
T Consensus       144 -~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif  222 (442)
T KOG2759|consen  144 -FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF  222 (442)
T ss_pred             -hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence             433332211111 12234444444 46777888999999999999999999999999999998843  46689999999


Q ss_pred             HHHHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCh------hhHHHHHhcCcHHHHHHhhccC
Q 047123          311 AIRNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGE------YFRLLIIQERGLQRLMHLIQDS  383 (579)
Q Consensus       311 aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~------~~r~~l~~~g~i~~Lv~ll~~~  383 (579)
                      |++-|+.++...+.+..-+.|+.|..+++.. -+.|..-++.++.|+....+      .....++..++.+.+-.+-+..
T Consensus       223 ciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  223 CIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            9999999999888888889999999999654 46788999999999987664      2335566667666665555444


Q ss_pred             CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---------CChhhHHHHHH
Q 047123          384 TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---------ISDGNKRAVAS  454 (579)
Q Consensus       384 ~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---------~~~~~~~~i~~  454 (579)
                      -+++++...    +..|...             +..-++-|.+.+.-..+   --.+.|.         ...++...+.+
T Consensus       303 ysDEDL~~d----i~~L~e~-------------L~~svq~LsSFDeY~sE---l~sG~L~WSP~Hk~e~FW~eNa~rlne  362 (442)
T KOG2759|consen  303 YSDEDLVDD----IEFLTEK-------------LKNSVQDLSSFDEYKSE---LRSGRLEWSPVHKSEKFWRENADRLNE  362 (442)
T ss_pred             CCcHHHHHH----HHHHHHH-------------HHHHHHhhccHHHHHHH---HHhCCcCCCccccccchHHHhHHHHhh
Confidence            443333322    2222211             00001111111110000   0011122         11245555555


Q ss_pred             H----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          455 C----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       455 ~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      .    +..|+++|+.+.++.+...||-=++...+..+.-+.++.+-||-..++++|..++++ ++..|+.++..|-.
T Consensus       363 nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~-Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  363 NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE-VRYHALLAVQKLMV  438 (442)
T ss_pred             ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch-HHHHHHHHHHHHHh
Confidence            5    889999997777788889999999999999888888888899999999999999999 88888887776654

>PTZ00429 beta-adaptin; Provisional

Probab=98.95  E-value=4e-06  Score=93.33  Aligned_cols=256  Identities=16%  Similarity=0.134  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      .+...+.+..+++.+.+.|.-.--.+..++..+++....     .++.|.+=+. ++++.+|-.|++.++.+..  ++..
T Consensus        67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~-d~Np~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTT-NSSPVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcC-CCCHHHHHHHHHHHHcCCc--HHHH
Confidence            346778888999999999999988888888766654322     3677888888 8999999999999998866  1222


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~  320 (579)
                      +     -.+.++.+.+.+.++.||..|+.++.++-...+  ..+...|.++.|.+++.+.++.++.+|+.+|..+.....
T Consensus       139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence            2     236677888888999999999999999874222  234456788899999999999999999999999976432


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      ..- -...+.+..++..+..-++-.|...+.+|......++.   .  ....+..+...+++.++  .+.-.|++++.++
T Consensus       212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~--AVVl~Aik~il~l  283 (746)
T PTZ00429        212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNP--AVVMGAIKVVANL  283 (746)
T ss_pred             hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHh
Confidence            221 12344566677777777788888888887654322211   1  13456667777777665  7888999999988


Q ss_pred             ccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          401 SLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       401 ~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      ...   +....+..   .....++.+ .+.++++|..+...|..+.
T Consensus       284 ~~~~~~~~~~~~~~---rl~~pLv~L-~ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        284 ASRCSQELIERCTV---RVNTALLTL-SRRDAETQYIVCKNIHALL  325 (746)
T ss_pred             cCcCCHHHHHHHHH---HHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence            764   11122221   133445555 4567788888777776665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.1e-07  Score=93.84  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=157.2

Q ss_pred             ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123          172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP  251 (579)
Q Consensus       172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~  251 (579)
                      ++.+.+.+..|+.-|..++. +-++...++..|+..+++.+++ +++..+|+.|+++|+..+.++|.++..+++.|+++.
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            45688999999999999984 5678888899999999999999 999999999999999999989999999999999999


Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhc-ChhhHHHHH
Q 047123          252 LLRILETG-SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAA-VEDIKAALA  326 (579)
Q Consensus       252 Lv~lL~~~-~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~-~~~~~~~l~  326 (579)
                      |+..|.+. +..++..|..+++.|-. ++.....|...+|...|...+++  .+..++..++..+..+.. ....+..+.
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999875 67788999999999995 66788888888999999999998  566788889888888876 344444555


Q ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ..+....++.+....+..+.+.++.++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            66777777777777788888888887776654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.7e-06  Score=89.82  Aligned_cols=278  Identities=16%  Similarity=0.227  Sum_probs=213.1

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCc---
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPE---  279 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~---  279 (579)
                      .|+.|+.-+..+.-.+-|..|++.|-.+++   .+|..+...| +++|++.|+..  ++++...+..++.++..+++   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            366677666524447889999999999998   8888887665 99999999875  78899999999999885442   


Q ss_pred             ----c----------HHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHH-HcCCHHHHHHHhcCC
Q 047123          280 ----N----------AWAIS-AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALA-EEGAVPVLVQSLTSS  341 (579)
Q Consensus       280 ----~----------~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~-~~g~v~~Lv~lL~~~  341 (579)
                          .          ...+. ..+-|..|+..+...|-.+|..++..+.++-.  ..+.+..+. .--+|..++.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence                1          12233 36788999999999999999999999999865  455666655 456899999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC--CChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHH
Q 047123          342 SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST--SSIVTVENALLAISSLSLS--DSAARILSSTTSFI  417 (579)
Q Consensus       342 ~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i  417 (579)
                      .+.+|..++-.|..+..+++..+..++=+++...|..++....  +..-+.+.|...|.||-.+  .+..-+.+.  +.+
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~--~~i  256 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG--SYI  256 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc--ccH
Confidence            9999999999999999999888888888999999999997653  2225788999999999987  778889999  999


Q ss_pred             HHHHHHHhc---CCH--------HHH--HHHHHHHHHhc--CCh-----hhHHHHHHH--HHHHHHhccCC-CCHhHHHH
Q 047123          418 IQLGEFIKR---GNV--------LLQ--QVSSSLLGNLS--ISD-----GNKRAVASC--MGSLIKLMECP-KPVGLQEA  474 (579)
Q Consensus       418 ~~L~~lL~~---~~~--------~v~--~~A~~aL~~L~--~~~-----~~~~~i~~~--v~~Lv~lL~~~-~~~~v~~~  474 (579)
                      ++|.++|..   ++.        .++  ..++.+++.+.  .++     .+++.+...  +..|+.++-+. -+.+++-.
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            999988742   231        122  35566666665  222     233455555  88899877222 47888988


Q ss_pred             HHHHHHHhhcCCcc
Q 047123          475 ATDAVLSLLTVRSN  488 (579)
Q Consensus       475 a~~aL~~L~~~~~~  488 (579)
                      +.-++.+..+....
T Consensus       337 siitvAevVRgn~~  350 (970)
T KOG0946|consen  337 SIITVAEVVRGNAR  350 (970)
T ss_pred             HHHHHHHHHHhchH
Confidence            88888888876543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=5.4e-07  Score=89.05  Aligned_cols=183  Identities=21%  Similarity=0.196  Sum_probs=159.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHH
Q 047123          259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQS  337 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~l  337 (579)
                      .+.+-++.|..-|..+..+-+|...+...||+.+++..+++.+..+++.|+++|...+. +|..+..+.+.|+.+.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            36778889999999999999999999999999999999999999999999999999987 78889999999999999999


Q ss_pred             hcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcC
Q 047123          338 LTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTT  414 (579)
Q Consensus       338 L~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~  414 (579)
                      +.+. +..++.+|+.++..+...++.....+...++...|...+.+.+.+...+..++..+..|...  .....+-..  
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~--  252 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL--  252 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh--
Confidence            9654 45788999999999999888888899998889999999999765568999999999999887  334444445  


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      ++...+..+....+.++.+.+..++..+.
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            77778888888889999999988877766

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=2.8e-06  Score=81.74  Aligned_cols=292  Identities=16%  Similarity=0.149  Sum_probs=191.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHc
Q 047123          249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEE  328 (579)
Q Consensus       249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~  328 (579)
                      +..++.++.+.++.++..|...+..++..+-..+.-.+.-.++.+.+++...++  -+.|+.+|.|++..+..+..+.+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            446788999999999999999999999762222222234577889999887766  678999999999999999998876


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-c----CcHHHHHH-hhccCCCChHHHHHHHHHHHHccc
Q 047123          329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-E----RGLQRLMH-LIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~----g~i~~Lv~-ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                       .+..++..+.+.........+..|.|++..+......+.. .    .++..++. +.+.+.....--.+.+-.+.||+.
T Consensus        83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~  161 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ  161 (353)
T ss_pred             -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence             7777788777665677888999999999987665544433 1    34444444 444333222344566778888888


Q ss_pred             c-hhHHHHHhhcCcHHHHHHHHHhcCCHHHH-HHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123          403 S-DSAARILSSTTSFIIQLGEFIKRGNVLLQ-QVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV  479 (579)
Q Consensus       403 ~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~-~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL  479 (579)
                      . ..+.-+.+.+ .+...-+.-+.+.+..+| ...+..|.|.|....+...+... +..|..+|                
T Consensus       162 ~~~gR~l~~~~k-~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iL----------------  224 (353)
T KOG2973|consen  162 FEAGRKLLLEPK-RFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAIL----------------  224 (353)
T ss_pred             hhhhhhHhcchh-hhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHH----------------
Confidence            7 4455555552 122222222334555666 46678999999666655543333 33333322                


Q ss_pred             HHhhcCCcchhHHHhhcccHHHHHhhcCCC---ch-hhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhcc-CC
Q 047123          480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPK---NE-ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAET-EV  554 (579)
Q Consensus       480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~---~~-~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~-~~  554 (579)
                      .-|+...+--.+   |...++.=+|+|...   ++ ..+++..+-+|.-|+.+..  +|+.+.+.|+.+.+..|=+. ++
T Consensus       225 lPlagpee~sEE---dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kgvYpilRElhk~e~d  299 (353)
T KOG2973|consen  225 LPLAGPEELSEE---DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKGVYPILRELHKWEED  299 (353)
T ss_pred             hhcCCccccCHH---HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcCchHHHHHHhcCCCc
Confidence            222221110011   112333334777532   11 1288899999999999999  99999999999999988655 46


Q ss_pred             chHHHHHHHHh
Q 047123          555 PGAKKVLQRLA  565 (579)
Q Consensus       555 ~~ak~~~~~l~  565 (579)
                      +++.++.+++.
T Consensus       300 ed~~~ace~vv  310 (353)
T KOG2973|consen  300 EDIREACEQVV  310 (353)
T ss_pred             HHHHHHHHHHH
Confidence            78888888765

>PF05536 Neurochondrin: Neurochondrin

Probab=98.75  E-value=1.1e-05  Score=87.56  Aligned_cols=378  Identities=15%  Similarity=0.106  Sum_probs=237.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh---HHHHHhhCcHHHHHHhhccC-------CCHHHHHHHHHHHHHh
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKS---AAVVAKEGNVGYLISLLDFH-------HQSSIREQAVLALSII  232 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~---~~~i~~~g~v~~Lv~LL~~~-------~~~~~~~~A~~aL~~L  232 (579)
                      .+...+.+|+..+.+.|..++.-+..++..++..   ++.|.+.=+.+.|-+||. +       +....+.-|+.+|..+
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~-t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLR-TGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence            5788999999999888889999999999877743   334666666788888998 6       2356777899999999


Q ss_pred             hccChhhHHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123          233 VSANDESRKIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA  311 (579)
Q Consensus       233 a~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a  311 (579)
                      +. .|+....---.+-||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+...+.+..+
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            99 87775333334679999999988877 89999999999999999999999999999999999887 55668889999


Q ss_pred             HHHhhcChhhHH---H-HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcC----cHHHHHHhhcc
Q 047123          312 IRNIAAVEDIKA---A-LAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQER----GLQRLMHLIQD  382 (579)
Q Consensus       312 L~nLs~~~~~~~---~-l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g----~i~~Lv~ll~~  382 (579)
                      +.++........   . -.-...++.+-..+.......+...+..|..+-...+.. ........    ....+..++.+
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            988866322110   0 001123445555555444556667788888776543210 11111122    22344445555


Q ss_pred             CCCChHHHHHHHHHHHHcccchhHHHHHhhc----CcHHHHHHHHH--------hc----CC-H-------------HHH
Q 047123          383 STSSIVTVENALLAISSLSLSDSAARILSST----TSFIIQLGEFI--------KR----GN-V-------------LLQ  432 (579)
Q Consensus       383 ~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~----~g~i~~L~~lL--------~~----~~-~-------------~v~  432 (579)
                      ... +..|..+......|...-..+-+....    ..+...++++.        ..    .+ +             .+-
T Consensus       243 r~~-~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~il  321 (543)
T PF05536_consen  243 RLT-PSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSIL  321 (543)
T ss_pred             CCC-HHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHH
Confidence            543 355666655555554431111111110    02333333331        11    11 1             111


Q ss_pred             HHHHHHHHHhcC------Chh----hHHHHHHHHHHHHHhccCCC-----CHhHHHHHHHHHHHhhcCCcch-hHHHhhc
Q 047123          433 QVSSSLLGNLSI------SDG----NKRAVASCMGSLIKLMECPK-----PVGLQEAATDAVLSLLTVRSNR-KELVRDE  496 (579)
Q Consensus       433 ~~A~~aL~~L~~------~~~----~~~~i~~~v~~Lv~lL~~~~-----~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~  496 (579)
                      +.....+.+-..      +++    .++.+.+++...+.+|++..     +.....++.++|+.-....++. +.-+  .
T Consensus       322 E~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~  399 (543)
T PF05536_consen  322 EHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--Y  399 (543)
T ss_pred             HHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--H
Confidence            122222222111      122    33444444666666664322     2335667888888877666553 3333  4


Q ss_pred             ccHHHHHhhcCCCchh---------hhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHh
Q 047123          497 KSVMRLMQMLDPKNEA---------LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQK  548 (579)
Q Consensus       497 ~~i~~Lv~lL~~~~~~---------~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~  548 (579)
                      +-++.++++......+         ....+.+-+|+.++..+.  +|+.+.++|+.+.|.+
T Consensus       400 ~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  400 GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--GRKILLSNGGWKLLCD  458 (543)
T ss_pred             HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--HHHHHHhCCcHHHHHH
Confidence            6778888888765444         156677788999988877  9999999999877775

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.71  E-value=2.7e-06  Score=85.21  Aligned_cols=275  Identities=15%  Similarity=0.131  Sum_probs=192.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      -...+.+|..++.-....+.+.+..++.............=....|-.+++.+.+++....|+++|..+.. .+++|..+
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~  194 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAF  194 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhee
Confidence            34567778888877776666666666543322211100011123334455523668888899999999999 99999999


Q ss_pred             HhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCh-
Q 047123          244 FEEGGLGPLLRILET--GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT-ALTQSHAVGAIRNIAAVE-  319 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~--~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLs~~~-  319 (579)
                      +.+.++..++..+-+  .+..+|...+.+++-|+.++..++.+...+.|+.|..+++... ..+..-++.+++|+.... 
T Consensus       195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~  274 (442)
T KOG2759|consen  195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP  274 (442)
T ss_pred             eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            999999999999943  3788999999999999999999988888899999999998754 467888889999998744 


Q ss_pred             ------hhHHHHHHcCCHHHHHHHhcC---CCHHHHH-------HHHHHHHHHhcCChhhH-------------------
Q 047123          320 ------DIKAALAEEGAVPVLVQSLTS---SSNLAQE-------NAADCIATLAASGEYFR-------------------  364 (579)
Q Consensus       320 ------~~~~~l~~~g~v~~Lv~lL~~---~~~~v~~-------~a~~~L~~La~~~~~~r-------------------  364 (579)
                            +....|+..++.+. ++.|..   .++++..       .--.-...|++.|+...                   
T Consensus       275 ~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW  353 (442)
T KOG2759|consen  275 DRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW  353 (442)
T ss_pred             hhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence                  33455666665555 445522   2444333       33333344444432211                   


Q ss_pred             ----HHHHh--cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          365 ----LLIIQ--ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       365 ----~~l~~--~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                          ..+-+  ...+..|+++++..++ +.....|+.=|......  .....+-..  |+-..+.+++.+.+++|+.+|.
T Consensus       354 ~eNa~rlnennyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh~d~~Vry~AL  430 (442)
T KOG2759|consen  354 RENADRLNENNYELLKILIKLLETSND-PIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNHEDPEVRYHAL  430 (442)
T ss_pred             HHhHHHHhhccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcCCCchHHHHHH
Confidence                11111  1356888999988874 46777888888888877  344445555  9999999999999999999999


Q ss_pred             HHHHHhc
Q 047123          437 SLLGNLS  443 (579)
Q Consensus       437 ~aL~~L~  443 (579)
                      .|+..|-
T Consensus       431 lavQ~lm  437 (442)
T KOG2759|consen  431 LAVQKLM  437 (442)
T ss_pred             HHHHHHH
Confidence            9988775

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2.5e-05  Score=85.64  Aligned_cols=324  Identities=18%  Similarity=0.201  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 047123          178 FKKKALESLLQLLKDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL  253 (579)
Q Consensus       178 ~~~~Al~~L~~l~~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv  253 (579)
                      -..-++.+|.++.+.+|+-...+.    --|..+.+..++.-.+++.++.-|+.++..+.. +.+|...++..|++..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence            445789999999988886555443    246667777777635678999999999999999 999999999999999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCh----hhH------
Q 047123          254 RILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVE----DIK------  322 (579)
Q Consensus       254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~----~~~------  322 (579)
                      .+|.+ -+..++.+..+|..|+++++..+.-.++|++..+.. +|.+.+++.+..++..+..+...+    ..+      
T Consensus      1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred             HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence            99977 566799999999999999999999999998777776 567778889999999998886532    111      


Q ss_pred             -----HHHHHcCCHHHHHHHhcCC--------CHHHHHHHHHHHHHHhcC------------------------------
Q 047123          323 -----AALAEEGAVPVLVQSLTSS--------SNLAQENAADCIATLAAS------------------------------  359 (579)
Q Consensus       323 -----~~l~~~g~v~~Lv~lL~~~--------~~~v~~~a~~~L~~La~~------------------------------  359 (579)
                           ...+. ..-+..++.+...        ++..+......+..++..                              
T Consensus      1899 LP~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1899 LPEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred             chHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence                 11111 1225566666432        334555555555554321                              


Q ss_pred             --ChhhHHHHHhc------------CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHH
Q 047123          360 --GEYFRLLIIQE------------RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEF  423 (579)
Q Consensus       360 --~~~~r~~l~~~------------g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~l  423 (579)
                        ....|..+.+.            |.++.+++++...++....-..-..++..|...  .-.+.+-..  |.++.++..
T Consensus      1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~L--GylPK~~~A 2055 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSL--GYLPKFCTA 2055 (2235)
T ss_pred             cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCc--cchHHHHHH
Confidence              00112222222            223445555554443223333334444444443  334455556  899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHH---hhccc
Q 047123          424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELV---RDEKS  498 (579)
Q Consensus       424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~---~~~~~  498 (579)
                      +...+..+-..|.+.|..|+.+.-..+++...  +..+++.+.+  ......-|+++|-.+...  ++..++   -..|-
T Consensus      2056 m~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r--~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK--QPSLMGLAAEALKRLMKR--NTGELVAQMLKCGL 2131 (2235)
T ss_pred             HHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh--cchHHHHHHHHHHHHHHH--hHHHHHHHHhccCc
Confidence            88777777788999999999998888888887  8888888733  344556889999888752  222222   23688


Q ss_pred             HHHHHhhcCCCc
Q 047123          499 VMRLMQMLDPKN  510 (579)
Q Consensus       499 i~~Lv~lL~~~~  510 (579)
                      |+.|+++|+...
T Consensus      2132 vpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2132 VPYLLQLLDSST 2143 (2235)
T ss_pred             HHHHHHHhcccc
Confidence            999999998653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4e-05  Score=74.39  Aligned_cols=336  Identities=13%  Similarity=0.127  Sum_probs=230.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh----HHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKS----AAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~  238 (579)
                      +.++|..-|..++..++.-++..+..+..+.+.+    ...++..+..+.++..+. ..+.++...|...|..++. .+.
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrial-fpa  160 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIAL-FPA  160 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHh-cHH
Confidence            5566667777778889999999998888766633    334558899999999998 8899999999999999999 999


Q ss_pred             hHHHHHhcCCHHHHHHH--HccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 047123          239 SRKIVFEEGGLGPLLRI--LETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRN  314 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~l--L~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n  314 (579)
                      .-+.++....++++-..  --..+.-++......+..+.+ +++.....-..|.+..|..-++. +|.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            99999888776654322  222345567777777777764 66777777778888888877765 677788888888999


Q ss_pred             hhcChhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHH----HHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCC
Q 047123          315 IAAVEDIKAALAEEGAVPVLVQSLTSS--SNLAQENAA----DCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSS  386 (579)
Q Consensus       315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~----~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~  386 (579)
                      |+..+..++.+.++|.|+.+.+.+...  +|--.-.++    ..+.+.+..+- .-+.+.+  --.++....+++..++ 
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv-seeaicealiiaidgsfEmiEmnDp-  318 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV-SEEAICEALIIAIDGSFEMIEMNDP-  318 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc-CHHHHHHHHHHHHHhhHHhhhcCCc-
Confidence            999999999999999999999988533  332222222    33333333221 0112222  1123344455566655 


Q ss_pred             hHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHH-HHhcCCHHHHHHHHHHHHHhcC---C-h----------hhHH
Q 047123          387 IVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGE-FIKRGNVLLQQVSSSLLGNLSI---S-D----------GNKR  450 (579)
Q Consensus       387 ~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~-lL~~~~~~v~~~A~~aL~~L~~---~-~----------~~~~  450 (579)
                       ..++.|..++..+.+. +..+.+...++-...+++. ........-|+.+..+|.+++.   - +          ..+.
T Consensus       319 -daieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrc  397 (524)
T KOG4413|consen  319 -DAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRC  397 (524)
T ss_pred             -hHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHH
Confidence             8899999999999988 5566666653333444443 3333334556777788888871   1 1          1222


Q ss_pred             HHHHH---------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHh
Q 047123          451 AVASC---------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ  504 (579)
Q Consensus       451 ~i~~~---------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~  504 (579)
                      .+.++         .+.+..++ .-..++++.++...+..++..+...+.+...++.|...++
T Consensus       398 lifdaaaqstkldPleLFlgil-qQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  398 LIFDAAAQSTKLDPLELFLGIL-QQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHHHhhccCCChHHHHHHHH-cCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence            23332         45566677 5568999999999999999988888887765555544433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.62  E-value=4.8e-06  Score=83.98  Aligned_cols=263  Identities=18%  Similarity=0.172  Sum_probs=177.2

Q ss_pred             HHHHhhCcHHHHHHhhccCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHh
Q 047123          198 AVVAKEGNVGYLISLLDFHHQS--SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAI  274 (579)
Q Consensus       198 ~~i~~~g~v~~Lv~LL~~~~~~--~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~L  274 (579)
                      ..+...|++..|++++. +++.  .+|.+|.+.|..+..  .++++.++..| +..++.+-+. ..++.+...+.+|.++
T Consensus       174 D~iR~~~~lD~Llrmf~-aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQ-APNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hHhhccchHHHHHHHHh-CCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            34556789999999999 8874  458899999987754  47788888777 5555555554 4788899999999999


Q ss_pred             cC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123          275 TT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLTSSSNLAQENAAD  351 (579)
Q Consensus       275 s~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~  351 (579)
                      -. +.+.+..+++.|++..++-.|+..++.+..+++.+|.|++.+  -+.+..|++..+-+-|..+-.+.++-.+.+||-
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            84 668899999999999999999999999999999999999874  467888999888888888877888889999999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcH---HHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC
Q 047123          352 CIATLAASGEYFRLLIIQERGL---QRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN  428 (579)
Q Consensus       352 ~L~~La~~~~~~r~~l~~~g~i---~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~  428 (579)
                      +++-++... ++-..+.+.|.+   ++++..++.+.-   .+             +..+-.....+..+++|+.+|.+.-
T Consensus       330 AV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~~F---AR-------------D~hd~aQG~~~d~LqRLvPlLdS~R  392 (832)
T KOG3678|consen  330 AVAVLATNK-EVEREVRKSGTLALVEPLVASLDPGRF---AR-------------DAHDYAQGRGPDDLQRLVPLLDSNR  392 (832)
T ss_pred             HHhhhhhhh-hhhHHHhhccchhhhhhhhhccCcchh---hh-------------hhhhhhccCChHHHHHhhhhhhcch
Confidence            999998754 345555566644   555555544321   00             0000111112245677777777655


Q ss_pred             HHHHHHHHHHHHHhc--CChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123          429 VLLQQVSSSLLGNLS--ISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVLSL  482 (579)
Q Consensus       429 ~~v~~~A~~aL~~L~--~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L  482 (579)
                      .+.|--++.-++.=+  .+..++..+.+.   |..|-++. .+.+...-..|.+||.-+
T Consensus       393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKeva-SS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVA-SSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHh
Confidence            555543333222222  233333333332   56666665 343333334455555544

>TIGR02270 conserved hypothetical protein

Probab=98.62  E-value=1.9e-05  Score=82.34  Aligned_cols=244  Identities=12%  Similarity=0.028  Sum_probs=173.0

Q ss_pred             HHHHHHHHhc-cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQ-IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++.++..|. ..+.+++..++..+...  ++         ...+..|+..|. +.++.++..++.+|+.+..       
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~-d~~~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQ-AGPEGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCc-------
Confidence            3677788884 55666666555555322  11         113888999998 8888899999999998877       


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                          .+..+.|+..|++.++.++..+..++.....           ...+.|..++++.++.++..++.+|..+-.    
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----  176 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPR----  176 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence                5778899999999999999888877766322           234788899999999999999999987644    


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-ccCCCChHHHHHHHHHHHHc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI-QDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L  400 (579)
                            ...++.|...+.+.++.++..|+..+..+-.  +         ..+..+..+. ..+.+   ....+..++...
T Consensus       177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~---~~~~l~~~lal~  236 (410)
T TIGR02270       177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGP---HRQRLLVLLAVA  236 (410)
T ss_pred             ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCcc---HHHHHHHHHHhC
Confidence                  2466778888999999999999999876633  1         2244555522 22222   222223333322


Q ss_pred             ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                       ..+          .++..|..+++...  ++..++.++..+.....        ++.|+..+ +.  ..++..|.+++.
T Consensus       237 -~~~----------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~a--------v~~L~~~l-~d--~~~aR~A~eA~~  292 (410)
T TIGR02270       237 -GGP----------DAQAWLRELLQAAA--TRREALRAVGLVGDVEA--------APWCLEAM-RE--PPWARLAGEAFS  292 (410)
T ss_pred             -Cch----------hHHHHHHHHhcChh--hHHHHHHHHHHcCCcch--------HHHHHHHh-cC--cHHHHHHHHHHH
Confidence             111          57778888887654  89999999998875544        88999999 33  238999999999


Q ss_pred             HhhcCCcc
Q 047123          481 SLLTVRSN  488 (579)
Q Consensus       481 ~L~~~~~~  488 (579)
                      .+..-.-.
T Consensus       293 ~ItG~~l~  300 (410)
T TIGR02270       293 LITGMDVA  300 (410)
T ss_pred             HhhCCCcc
Confidence            99875433

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=6.6e-05  Score=80.91  Aligned_cols=350  Identities=12%  Similarity=0.060  Sum_probs=215.2

Q ss_pred             CchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          155 SHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       155 a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      .+.|-.+...++..++|+..++-+|.+|+.|...+....|+....     +++...++|. +.++.+...++..+..++.
T Consensus       135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~  208 (866)
T KOG1062|consen  135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLC-EKHHGVLIAGLHLITELCK  208 (866)
T ss_pred             CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHh-hcCCceeeeHHHHHHHHHh
Confidence            566777888899999999999999999999999998877776544     4666777887 8888888888888888888


Q ss_pred             cChhhHHHHHhcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCCcc-HHHHHh------------
Q 047123          235 ANDESRKIVFEEGGLGPLLRILET---------------GSMPLKEKAAIGVEAITTDPEN-AWAISA------------  286 (579)
Q Consensus       235 ~~~~~~~~i~~~g~l~~Lv~lL~~---------------~~~~v~~~aa~~L~~Ls~~~~~-~~~i~~------------  286 (579)
                      .+++.-..+.+  .++.|+..|++               .+|.+|....+.|.-|..++.. .+.+.+            
T Consensus       209 ~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss  286 (866)
T KOG1062|consen  209 ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS  286 (866)
T ss_pred             cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence            56666666654  67778888764               1677888888888888864432 222211            


Q ss_pred             cC-cHHHHHHHhc-----CCCHHHHHHHHHHHHHhhcChhh-HHHH--------H--HcCCH----HHHHHHhcCCCHHH
Q 047123          287 YG-GVSVLIEAFR-----SGTALTQSHAVGAIRNIAAVEDI-KAAL--------A--EEGAV----PVLVQSLTSSSNLA  345 (579)
Q Consensus       287 ~g-~i~~Lv~ll~-----~~~~~~~~~a~~aL~nLs~~~~~-~~~l--------~--~~g~v----~~Lv~lL~~~~~~v  345 (579)
                      .+ |=..|.+...     ..+..++..|+.+|...-.++++ -+.+        +  +..++    ..++.+|++.+..+
T Consensus       287 kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI  366 (866)
T KOG1062|consen  287 KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI  366 (866)
T ss_pred             ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence            00 1111222111     24556777777777666554332 1111        1  11222    34667777777788


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHH
Q 047123          346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEF  423 (579)
Q Consensus       346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~l  423 (579)
                      +..|++.+..|...+ +.+.      .++.|+.+|...+.  +.+...+.-+..++..  +...       -.+..+...
T Consensus       367 krralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~--~~k~~~as~I~~laEkfaP~k~-------W~idtml~V  430 (866)
T KOG1062|consen  367 KRRALELSYALVNES-NVRV------MVKELLEFLESSDE--DFKADIASKIAELAEKFAPDKR-------WHIDTMLKV  430 (866)
T ss_pred             HHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccH--HHHHHHHHHHHHHHHhcCCcch-------hHHHHHHHH
Confidence            888888777776643 3322      35677777777754  6777777777766654  2211       456677777


Q ss_pred             HhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHH--hccCCCCHhHHHHHHHHHHHhh---cC--CcchhHHH
Q 047123          424 IKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIK--LMECPKPVGLQEAATDAVLSLL---TV--RSNRKELV  493 (579)
Q Consensus       424 L~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~--lL~~~~~~~v~~~a~~aL~~L~---~~--~~~~~~~~  493 (579)
                      +.....-|+......+..|-  ..++...+.... ...+..  ++ .-....+...+.++|+...   .+  ..+-...+
T Consensus       431 l~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~-~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~v  509 (866)
T KOG1062|consen  431 LKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLL-DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKV  509 (866)
T ss_pred             HHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcC
Confidence            77665555555544444443  212322221111 111111  22 2223445667777777654   11  11222344


Q ss_pred             hhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCC
Q 047123          494 RDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGG  529 (579)
Q Consensus       494 ~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~  529 (579)
                      .+...+..|.+++...... +.|.+++.++++|+.--
T Consensus       510 tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~  546 (866)
T KOG1062|consen  510 TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF  546 (866)
T ss_pred             CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence            4567788888888766443 38999999999998533

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.5e-05  Score=76.85  Aligned_cols=295  Identities=15%  Similarity=0.168  Sum_probs=194.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ..-+++..|++.++.++..|+..+..+...  ..+.... +.-.++.+.+|++ ..++  -+.|+.+|.|++. ++..++
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq-~~~l~~   77 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQ-KEELRK   77 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHh-hHHHHH
Confidence            356789999999999999999999988755  2222221 3556888899988 6655  6789999999999 999999


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-------cCcHHHHHHHhcCCCH--HHHHHHHHHH
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA-------YGGVSVLIEAFRSGTA--LTQSHAVGAI  312 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL  312 (579)
                      .+.+. .+..++..+-++....-...|..|.||+..+.....+..       .|.+......+..+-.  .-..+.+-++
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            99877 666677777666566777888999999987654443322       3444444455654322  2345667788


Q ss_pred             HHhhcChhhHHHHHHcCCHHH-HHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123          313 RNIAAVEDIKAALAEEGAVPV-LVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV  390 (579)
Q Consensus       313 ~nLs~~~~~~~~l~~~g~v~~-Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~  390 (579)
                      .||+..+..|..+.+...++. .+..+.+. +.--+...+++|.|.|.+.. ....+.+ -.+..|..+|..        
T Consensus       157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~-e~~~lLp~iLlP--------  226 (353)
T KOG2973|consen  157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLD-ESINLLPAILLP--------  226 (353)
T ss_pred             HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhc-chHHHHHHHHhh--------
Confidence            999999999998887664443 11123333 33455678899999988654 3555554 223333322221        


Q ss_pred             HHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhcc
Q 047123          391 ENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK-----RGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLME  464 (579)
Q Consensus       391 ~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~  464 (579)
                               ++..+.   +-+.+-..++.=+++|.     ..++.++..-..+|.-|+.....|+.+... +.++++.+.
T Consensus       227 ---------lagpee---~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElh  294 (353)
T KOG2973|consen  227 ---------LAGPEE---LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELH  294 (353)
T ss_pred             ---------cCCccc---cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHh
Confidence                     111100   00000011222225553     458899999999999999888999999998 888888772


Q ss_pred             -CCCCHhHHHHHHHHHHHhhcCC
Q 047123          465 -CPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       465 -~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                       ..++.++++.+-...--|.+..
T Consensus       295 k~e~ded~~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  295 KWEEDEDIREACEQVVQMLVRLE  317 (353)
T ss_pred             cCCCcHHHHHHHHHHHHHHHhcc
Confidence             3457777877777666666543

>TIGR02270 conserved hypothetical protein

Probab=98.55  E-value=3.5e-05  Score=80.29  Aligned_cols=246  Identities=15%  Similarity=0.033  Sum_probs=173.2

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW  282 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~  282 (579)
                      ..+++.|+..|...++.+++..++.++.....           ..++..|++.|.+.++.++..++.+|..+-.      
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence            34688899988425667777666554432222           1238999999999999999999999987543      


Q ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123          283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY  362 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~  362 (579)
                          ....+.|+.++++.++.++..++.++...           .....+.+..+|++.++.++..++.+|+.+..    
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----  176 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----  176 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence                34668899999999999998888776652           12245788889999999999999999998765    


Q ss_pred             hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123          363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL  442 (579)
Q Consensus       363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L  442 (579)
                             ...++.|...+.+.++  .++..|+.++..+...           .++..+..+...........+..++...
T Consensus       177 -------~~a~~~L~~al~d~~~--~VR~aA~~al~~lG~~-----------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       177 -------RLSESTLRLYLRDSDP--EVRFAALEAGLLAGSR-----------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             -------ccchHHHHHHHcCCCH--HHHHHHHHHHHHcCCH-----------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                   2346667777777766  8999999999777543           4555555544333333333333333333


Q ss_pred             cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH
Q 047123          443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT  522 (579)
Q Consensus       443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L  522 (579)
                       ..+       +.++.|..++ ..  ..++..++.+|+.+-.           ...++.|++.+++..   .+..+-.++
T Consensus       237 -~~~-------~a~~~L~~ll-~d--~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~---~aR~A~eA~  291 (410)
T TIGR02270       237 -GGP-------DAQAWLRELL-QA--AATRREALRAVGLVGD-----------VEAAPWCLEAMREPP---WARLAGEAF  291 (410)
T ss_pred             -Cch-------hHHHHHHHHh-cC--hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH---HHHHHHHHH
Confidence             322       2278888888 33  2389999999998663           567899999998654   666777777


Q ss_pred             HHHhCCC
Q 047123          523 AAVLGGG  529 (579)
Q Consensus       523 ~~L~~~~  529 (579)
                      ..++.-+
T Consensus       292 ~~ItG~~  298 (410)
T TIGR02270       292 SLITGMD  298 (410)
T ss_pred             HHhhCCC
Confidence            7776533

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.53  E-value=5.7e-06  Score=83.45  Aligned_cols=252  Identities=17%  Similarity=0.186  Sum_probs=180.2

Q ss_pred             HHHHHhcCcHHHHHHHhcCCCH--HHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 047123          281 AWAISAYGGVSVLIEAFRSGTA--LTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLA  357 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La  357 (579)
                      |..+...|++..|+.++...+.  .++..+...|-.+. ..+|++.++..| ...++.+-+ .+.++.+...+..|.++-
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            4566678999999999998765  45777887776654 347788888777 555555543 345688999999999998


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123          358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQV  434 (579)
Q Consensus       358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~  434 (579)
                      .+.+..+..++..|+++.++-..+..++  .+..+++-+|.|++.+   .....+++.  .+-+.|..+-.+.+.-.+..
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P--~lLRH~ALAL~N~~L~~~~a~qrrmveK--r~~EWLF~LA~skDel~R~~  326 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDP--ALLRHCALALGNCALHGGQAVQRRMVEK--RAAEWLFPLAFSKDELLRLH  326 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCH--HHHHHHHHHhhhhhhhchhHHHHHHHHh--hhhhhhhhhhcchHHHHHHH
Confidence            8888888999999999999888887775  8999999999999987   667788988  88888888888888899999


Q ss_pred             HHHHHHHhcCChhhHHHHHHH-----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHh--hcccHHHHHhhcC
Q 047123          435 SSSLLGNLSISDGNKRAVASC-----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVR--DEKSVMRLMQMLD  507 (579)
Q Consensus       435 A~~aL~~L~~~~~~~~~i~~~-----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~--~~~~i~~Lv~lL~  507 (579)
                      |+-+++.|+.+.+..+.+...     +++|+..+ +..- -.|.+               ....+  ...-++.|+.||+
T Consensus       327 AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~-DP~~-FARD~---------------hd~aQG~~~d~LqRLvPlLd  389 (832)
T KOG3678|consen  327 ACLAVAVLATNKEVEREVRKSGTLALVEPLVASL-DPGR-FARDA---------------HDYAQGRGPDDLQRLVPLLD  389 (832)
T ss_pred             HHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc-Ccch-hhhhh---------------hhhhccCChHHHHHhhhhhh
Confidence            999999999888877777665     77777777 3221 11111               11111  1224678888998


Q ss_pred             CCchhhhhHHHHHHHHHHhCCCCh-hHHHHHHHcCchHHHHhhhccCCch
Q 047123          508 PKNEALNKKFPVMVTAAVLGGGSN-GCRKRLVAAGAYQHLQKLAETEVPG  556 (579)
Q Consensus       508 ~~~~~~~k~~av~~L~~L~~~~~~-~~r~~i~~~g~~~~L~~L~~~~~~~  556 (579)
                      ++.-+ .+-.+.--++.-+.-++. +--+.+-+-|+|..|..++.+.+..
T Consensus       390 S~R~E-Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~v  438 (832)
T KOG3678|consen  390 SNRLE-AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEV  438 (832)
T ss_pred             cchhh-hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHH
Confidence            65433 222222222222221211 1346677899999999999876653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=0.00024  Score=69.09  Aligned_cols=338  Identities=15%  Similarity=0.105  Sum_probs=220.3

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh----HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDES----RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN  280 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~----~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~  280 (579)
                      ..|.|..=|. .++..+...++..++-+-.+.+.+    ...++..|.++.++..+...+.++...|...+..++..+..
T Consensus        83 lmpdLQrGLi-addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   83 LMPDLQRGLI-ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhHHHHhccc-CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence            3455555555 777888888888888777644422    23345789999999999999999999999999999988887


Q ss_pred             HHHHHhcCcHHHH--HHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 047123          281 AWAISAYGGVSVL--IEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATL  356 (579)
Q Consensus       281 ~~~i~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~L  356 (579)
                      -..+...+....+  .++-...+.-.+......+..+.+ .++.....-..|.+..|..-+.. .+.-++..+++....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            7777766544433  233233344455666666666655 66666666678888887777754 5667888999999999


Q ss_pred             hcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc----ccch-hHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123          357 AASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL----SLSD-SAARILSSTTSFIIQLGEFIKRGNVLL  431 (579)
Q Consensus       357 a~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L----~~~~-~~~~l~~~~~g~i~~L~~lL~~~~~~v  431 (579)
                      +... ..|+.+.++|.++.+..++...++.+--+-.+......+    +..+ .-+.+.+.-.-++....++++..+++.
T Consensus       242 aete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  242 AETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            8754 568889999999999998866554333333333333332    2222 222233321135666778889999999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHH----HHHHH-HhccCCCCHhHHHHHHHHHHHhhcC---CcchhH----------HH
Q 047123          432 QQVSSSLLGNLSISDGNKRAVASC----MGSLI-KLMECPKPVGLQEAATDAVLSLLTV---RSNRKE----------LV  493 (579)
Q Consensus       432 ~~~A~~aL~~L~~~~~~~~~i~~~----v~~Lv-~lL~~~~~~~v~~~a~~aL~~L~~~---~~~~~~----------~~  493 (579)
                      +..|..+++-|..+.+..+.+...    .+.++ +.. +-....-++.+..+|.+++..   .+++..          .+
T Consensus       321 ieaAiDalGilGSnteGadlllkTgppaaehllaraf-dqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAF-DQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHh-cccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            999999999999888888777666    33333 344 333334467777777777643   222210          00


Q ss_pred             -----h--hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHh
Q 047123          494 -----R--DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQK  548 (579)
Q Consensus       494 -----~--~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~  548 (579)
                           +  .-.........+..+.++ ..-++...+..++..+=  +.+.|. ..|.+....+
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpE-ihcAalktfTAiaaqPW--alkeifakeefieiVtD  459 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPE-IHCAALKTFTAIAAQPW--ALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChh-hHHHHHHHHHHHHcCcH--HHHHHhcCccceeeecc
Confidence                 0  012233445566666666 67777888888887765  656555 4555555544

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.44  E-value=2.4e-06  Score=72.24  Aligned_cols=135  Identities=14%  Similarity=0.194  Sum_probs=117.2

Q ss_pred             CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 047123          248 GLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA  326 (579)
Q Consensus       248 ~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~  326 (579)
                      .+..|+.-... .+.+.++....-|.|.+.+|.|-..+.+.+++...+.-+...+..+.+.+++.|+|+|.++.+.+.+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~   96 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR   96 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence            34444444433 47889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc
Q 047123          327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD  382 (579)
Q Consensus       327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~  382 (579)
                      +.+++|.++..+++..+.+...++.++..|+..+...|..+....+++.+.++-.+
T Consensus        97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s  152 (173)
T KOG4646|consen   97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES  152 (173)
T ss_pred             HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877778888777777776665433

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.36  E-value=0.00018  Score=73.95  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=179.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+..++..+.+.+..+|..|...+..+.           ....++.|..++. +.++.+|..|+.+|+.+..        
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~--------  103 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLS-DEDPRVRDAAADALGELGD--------  103 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhc-CCCHHHHHHHHHHHHccCC--------
Confidence            5788889999999999999998876663           2346999999999 9999999999999999887        


Q ss_pred             HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH------------HHHHHH
Q 047123          243 VFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL------------TQSHAV  309 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~------------~~~~a~  309 (579)
                         ...+++++..+. +++..++..++++|..+-..          ..+..++..+++....            ++..+.
T Consensus       104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence               567999999999 58999999999999998752          2468888888776532            333333


Q ss_pred             HHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123          310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT  389 (579)
Q Consensus       310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~  389 (579)
                      ..|..          +.+...++.+...+.+.+..++..+..+|..+...+         ....+.+...+.+.+.  .+
T Consensus       171 ~~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~--~v  229 (335)
T COG1413         171 EALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL--EV  229 (335)
T ss_pred             HHHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH--HH
Confidence            33332          223446788888888888899999999998887643         2345667777777665  78


Q ss_pred             HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCH
Q 047123          390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPV  469 (579)
Q Consensus       390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~  469 (579)
                      +..++.+|..+-..           ..+..+...+...+..+...+..++...-...        ....+...+ .....
T Consensus       230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~-~~~~~  289 (335)
T COG1413         230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALDLAE--------AALPLLLLL-IDEAN  289 (335)
T ss_pred             HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccCchh--------hHHHHHHHh-hcchh
Confidence            88888888876654           56677777888888877766666655221111        144455555 44556


Q ss_pred             hHHHHHHHHHHHhhc
Q 047123          470 GLQEAATDAVLSLLT  484 (579)
Q Consensus       470 ~v~~~a~~aL~~L~~  484 (579)
                      .++..+..++.....
T Consensus       290 ~~~~~~~~~l~~~~~  304 (335)
T COG1413         290 AVRLEAALALGQIGQ  304 (335)
T ss_pred             hHHHHHHHHHHhhcc
Confidence            667777766666543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00021  Score=76.10  Aligned_cols=308  Identities=14%  Similarity=0.098  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      .+--|..-++++.+|.+.-+-+|.+|.-.+..+.-.-|+..+     ...|.|++-|+ ++|+.++-.|+.+++.|+..+
T Consensus       139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLe-DpDp~V~SAAV~VICELArKn  212 (877)
T KOG1059|consen  139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLE-DPDPSVVSAAVSVICELARKN  212 (877)
T ss_pred             chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhC
Confidence            344466789999999999999999999888888765555432     35899999999 999999999999999999876


Q ss_pred             hhhH--------HHHH-------------------------hcCCHHHHHHHHccCC-HHHHHHHHHHHHH--hcC-CCc
Q 047123          237 DESR--------KIVF-------------------------EEGGLGPLLRILETGS-MPLKEKAAIGVEA--ITT-DPE  279 (579)
Q Consensus       237 ~~~~--------~~i~-------------------------~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~--Ls~-~~~  279 (579)
                      |.+-        +.+.                         ....++||..++++.. +.+...+..++..  ++. .++
T Consensus       213 PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d  292 (877)
T KOG1059|consen  213 PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD  292 (877)
T ss_pred             CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence            6652        1111                         1235566666665542 3333344433322  222 112


Q ss_pred             cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       280 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      +-..+  .=.+..|-.++.+.|+.++..++.++..+.. ++.....     --+.++++|.+.++.++..|+..|.-+..
T Consensus       293 ~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  293 HSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             cHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            11111  1145677778889999999999999998876 4432222     12467889999999999999999998876


Q ss_pred             CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123          359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL  438 (579)
Q Consensus       359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a  438 (579)
                      .+ +.++      .+..|+..+..... ...+...+.-+-.+|...+-.-+..- .-.+..|+++.+-....--..-+.=
T Consensus       366 kk-Nl~e------IVk~LM~~~~~ae~-t~yrdell~~II~iCS~snY~~ItdF-EWYlsVlveLa~l~~~~~G~~I~eQ  436 (877)
T KOG1059|consen  366 KK-NLME------IVKTLMKHVEKAEG-TNYRDELLTRIISICSQSNYQYITDF-EWYLSVLVELARLEGTRHGSLIAEQ  436 (877)
T ss_pred             hh-hHHH------HHHHHHHHHHhccc-hhHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHHHHhccccchhhHHHHH
Confidence            43 3222      35566665544433 13455555555555554222222211 0235566666543332222223333


Q ss_pred             HHHhc-CChhhHHHHHHHHHHHHH--hc-----cCCCCHhHHHHHHHHHHHhhcCC
Q 047123          439 LGNLS-ISDGNKRAVASCMGSLIK--LM-----ECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       439 L~~L~-~~~~~~~~i~~~v~~Lv~--lL-----~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +.+++ .-+..|......+-.|+.  ++     .++.-.+|..+|+++++..+...
T Consensus       437 i~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v  492 (877)
T KOG1059|consen  437 IIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV  492 (877)
T ss_pred             HHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence            55566 555556544444333333  22     12234677778888888877643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00042  Score=76.45  Aligned_cols=325  Identities=13%  Similarity=0.141  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHh----cCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH
Q 047123          221 IREQAVLALSIIVSANDESRKIVFE----EGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE  295 (579)
Q Consensus       221 ~~~~A~~aL~~La~~~~~~~~~i~~----~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~  295 (579)
                      -.+.++.+|.|+-..+|+....+..    -|-++.++.++.. +.+.++.-+...+..++.+.+|...++..|.+..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            4457889999988768865544433    3667777777776 4788999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCC---hhhHH------
Q 047123          296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASG---EYFRL------  365 (579)
Q Consensus       296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~---~~~r~------  365 (579)
                      +|-+ -+..++.++.+|..|+++++.-....++|++.-+..++ .+.++..+..++..++.|..+.   +..+-      
T Consensus      1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            8854 56789999999999999999888888889888887776 5567889999999999997532   11111      


Q ss_pred             --HHHh--cCcHHHHHHhhccCCCChH------HHHHHHHHHHHcccc--------------------------------
Q 047123          366 --LIIQ--ERGLQRLMHLIQDSTSSIV------TVENALLAISSLSLS--------------------------------  403 (579)
Q Consensus       366 --~l~~--~g~i~~Lv~ll~~~~~~~~------~~~~A~~aL~~L~~~--------------------------------  403 (579)
                        .+.+  ..+.+..+++++..+.+++      .+......+..+...                                
T Consensus      1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred             hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence              1111  1223677777766543222      222233333333221                                


Q ss_pred             ---------------hhHHHHHhhcCcHHHHHHHHHhcCCHH--HHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhc
Q 047123          404 ---------------DSAARILSSTTSFIIQLGEFIKRGNVL--LQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLM  463 (579)
Q Consensus       404 ---------------~~~~~l~~~~~g~i~~L~~lL~~~~~~--v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL  463 (579)
                                     ..-+.++.   +.+..+++++...+++  .-..-.+++..|- .+|.....+..-  +|.++..+
T Consensus      1980 G~~~R~Fi~~P~f~LR~Pk~FL~---~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLT---ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred             hhhhHHHhhCCCCcccCHHHHHH---HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence                           00011111   3455556666554442  2222334444444 677776666665  89999877


Q ss_pred             cCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCch
Q 047123          464 ECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAY  543 (579)
Q Consensus       464 ~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~  543 (579)
                       ...+..+-..|.++|..|+.+.-+...+.+ ...+..++..|......  ...|+.+|..+......+...++...|.+
T Consensus      2057 -~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~~~--~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2057 -CLQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQPSL--MGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             -HhcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcchH--HHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence             444555568899999999987666666554 66667788887755433  23556666666654433456667789999


Q ss_pred             HHHHhhhccC
Q 047123          544 QHLQKLAETE  553 (579)
Q Consensus       544 ~~L~~L~~~~  553 (579)
                      ++|.+|++..
T Consensus      2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccc
Confidence            9999998764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00044  Score=74.32  Aligned_cols=349  Identities=14%  Similarity=0.100  Sum_probs=214.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh--------
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE--------  238 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~--------  238 (579)
                      ..+.-++.+.+++..|+.||..++.-..++...-......+.-+.-++ +.+.++..++...-+++|...-+        
T Consensus       222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~  300 (859)
T KOG1241|consen  222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEA  300 (859)
T ss_pred             eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456778999999999999998766666666566666777777778 99999999999999988862111        


Q ss_pred             --------hHHHHH--hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC
Q 047123          239 --------SRKIVF--EEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT  301 (579)
Q Consensus       239 --------~~~~i~--~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~  301 (579)
                              +.....  -.+++|.|+++|...       +-.....|..+|.-++..-  ...|+. .+++-+=+.++++|
T Consensus       301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~pd  377 (859)
T KOG1241|consen  301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNPD  377 (859)
T ss_pred             hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCcc
Confidence                    011111  125778888888652       2235555666666655311  111111 23333334566788


Q ss_pred             HHHHHHHHHHHHHhhcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHh
Q 047123          302 ALTQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR-LLIIQERGLQRLMHL  379 (579)
Q Consensus       302 ~~~~~~a~~aL~nLs~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r-~~l~~~g~i~~Lv~l  379 (579)
                      ..-++.++.++..+-..+ ..+..-...+++|.++.++.+.+--++..+.|+++.++..-+..+ ....-.+.++.++.-
T Consensus       378 wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g  457 (859)
T KOG1241|consen  378 WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG  457 (859)
T ss_pred             hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence            899999999998887744 345555567899999999998888899999999999987654311 111113344555555


Q ss_pred             hccCCCChHHHHHHHHHHHHcccc--h----h-----HHHHHhhcCcHHHHHHHHHhc---CCHHHHHHHHHHHHHhc-C
Q 047123          380 IQDSTSSIVTVENALLAISSLSLS--D----S-----AARILSSTTSFIIQLGEFIKR---GNVLLQQVSSSLLGNLS-I  444 (579)
Q Consensus       380 l~~~~~~~~~~~~A~~aL~~L~~~--~----~-----~~~l~~~~~g~i~~L~~lL~~---~~~~v~~~A~~aL~~L~-~  444 (579)
                      +.+.   +.+..++++++.+|+..  +    .     ...+.+.   .+..|++.-..   .....|..|-.+|+.|. .
T Consensus       458 L~De---Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~---ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~  531 (859)
T KOG1241|consen  458 LNDE---PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA---IIGSLLKVTDRADGNQSNLRSAAYEALMELIKN  531 (859)
T ss_pred             hhhC---chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH---HHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence            5543   47999999999999964  1    1     1112221   33333333222   34578888899999998 4


Q ss_pred             Chh-hHHHHHHH----HHHH---HH--hccCC---CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch
Q 047123          445 SDG-NKRAVASC----MGSL---IK--LMECP---KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE  511 (579)
Q Consensus       445 ~~~-~~~~i~~~----v~~L---v~--lL~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~  511 (579)
                      +++ ....+.+.    +..|   +.  .+..+   +..+++..-+..|.++.+.......-+. +.....+++++.+...
T Consensus       532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~-d~iM~lflri~~s~~s  610 (859)
T KOG1241|consen  532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS-DQIMGLFLRIFESKRS  610 (859)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH-HHHHHHHHHHHcCCcc
Confidence            443 33333333    2222   22  33111   2356677777788877665433333332 4566778888888444


Q ss_pred             hhhhHHHHHHHHHHh
Q 047123          512 ALNKKFPVMVTAAVL  526 (579)
Q Consensus       512 ~~~k~~av~~L~~L~  526 (579)
                      .++.+.+..++..|+
T Consensus       611 ~~v~e~a~laV~tl~  625 (859)
T KOG1241|consen  611 AVVHEEAFLAVSTLA  625 (859)
T ss_pred             ccchHHHHHHHHHHH
Confidence            434444443333333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=4.3e-05  Score=79.14  Aligned_cols=357  Identities=14%  Similarity=0.111  Sum_probs=222.0

Q ss_pred             hhHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHh--ccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 047123          157 KQDLVLFIRDIFTRL-QIGGVEFKKKALESLLQLL--KDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIV  233 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L-~~~~~~~~~~Al~~L~~l~--~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La  233 (579)
                      .+.++..|..|.... .+++...+..++..++..+  -+.+ ...  --++.+++.+..+. +.+..+|-.|+..+.|++
T Consensus        37 ~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~~~--Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNia  112 (675)
T KOG0212|consen   37 YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-DAG--YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIA  112 (675)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-cHH--HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHH
Confidence            344555555454433 3344444444444443331  1111 111  34567889999988 899999999999999999


Q ss_pred             ccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123          234 SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP--ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA  311 (579)
Q Consensus       234 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a  311 (579)
                      . -........-......++++..+.+..++. ++..|-.|-.+.  +....|.=.+.|+.|-+.+..-++..+...+.-
T Consensus       113 K-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~W  190 (675)
T KOG0212|consen  113 K-VAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSW  190 (675)
T ss_pred             H-HhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            8 222222222234566777777766666554 444454443211  111134335567777777777788888888888


Q ss_pred             HHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh----cCChhhHHHHHhcCcHHHHHHhhccCCCCh
Q 047123          312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA----ASGEYFRLLIIQERGLQRLMHLIQDSTSSI  387 (579)
Q Consensus       312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La----~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~  387 (579)
                      |..|-..|+....-.-....+-|+.+|++.+++++..+-.+|.++-    +.+..    +--...++.++..+.+..+  
T Consensus       191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~ss~~--  264 (675)
T KOG0212|consen  191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQSSEP--  264 (675)
T ss_pred             HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccCCcH--
Confidence            8777666655433223346777888999999999877776666543    22211    1114467777777777765  


Q ss_pred             HHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCH-HHHHHHHH---HHHHhcCChhhHHHH--HHHHHHHH
Q 047123          388 VTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNV-LLQQVSSS---LLGNLSISDGNKRAV--ASCMGSLI  460 (579)
Q Consensus       388 ~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~-~v~~~A~~---aL~~L~~~~~~~~~i--~~~v~~Lv  460 (579)
                      .++..|...|..+..- +..-...-+  |++..++..+.+..+ ..+..+..   .+..+..++...+.+  +.-++.|.
T Consensus       265 ~iq~~al~Wi~efV~i~g~~~l~~~s--~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~  342 (675)
T KOG0212|consen  265 EIQLKALTWIQEFVKIPGRDLLLYLS--GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT  342 (675)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhh--hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Confidence            8999998888877665 222222233  566666666666555 34444443   344444444433322  22288888


Q ss_pred             HhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          461 KLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       461 ~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      +.+ ..+..+.|..+..-+..|-...++.-... .+.....|+.-|.+++++ +...++.++..++.+..
T Consensus       343 ~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~-vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  343 KYL-SDDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDE-VVLLALSLLASICSSSN  409 (675)
T ss_pred             HHh-hcchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhH-HHHHHHHHHHHHhcCcc
Confidence            999 77788999999998888877666544333 355667888888888777 77788888999987774

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00051  Score=73.80  Aligned_cols=329  Identities=12%  Similarity=0.068  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          158 QDLVLFIRDIFT-RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       158 ~~~~~~v~~Lv~-~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      +.|-.-|+++++ .+++.|...|..|+.+++.+..+-+..+..-...+++|.++.++. ++...++..+++.++.++...
T Consensus       359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhc
Confidence            334445666666 889999999999999999999877666666677889999999999 889999999999999999844


Q ss_pred             hhhHH-HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-----Ccc-HHHHHh---cCcHHHHHHHhcC---CCHH
Q 047123          237 DESRK-IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-----PEN-AWAISA---YGGVSVLIEAFRS---GTAL  303 (579)
Q Consensus       237 ~~~~~-~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-----~~~-~~~i~~---~g~i~~Lv~ll~~---~~~~  303 (579)
                      ++... .....+.++.+++-|.+ .|.+-.++||++.+|+..     +.+ +..+..   ..+|..|++.-..   ....
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN  516 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN  516 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence            54332 22223455555555544 677899999999999821     011 111111   1122333332221   1224


Q ss_pred             HHHHHHHHHHHhhcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH-HHHHhhc
Q 047123          304 TQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQ-RLMHLIQ  381 (579)
Q Consensus       304 ~~~~a~~aL~nLs~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~-~Lv~ll~  381 (579)
                      +|..+-.+|..+-.+. +..-.+                   ++.-...++..|-             ..++ ..+.+-+
T Consensus       517 LR~AAYeALmElIk~st~~vy~~-------------------v~~~~l~il~kl~-------------q~i~~~~l~~~d  564 (859)
T KOG1241|consen  517 LRSAAYEALMELIKNSTDDVYPM-------------------VQKLTLVILEKLD-------------QTISSQILSLAD  564 (859)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHH-------------------HHHHHHHHHHHHH-------------HHHHHHhccHhh
Confidence            5555555555443321 110000                   1111111111100             0000 0000000


Q ss_pred             cCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhc--CChhhHHHHHHHH
Q 047123          382 DSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLS--ISDGNKRAVASCM  456 (579)
Q Consensus       382 ~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v  456 (579)
                      ...- .+++..-+..|..+...  ..+....+   ..+..|+.++++ .+..+.+.|..++..++  -.+...+++-.-.
T Consensus       565 r~q~-~eLQs~Lc~~Lq~i~rk~~~~~~~~~d---~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~  640 (859)
T KOG1241|consen  565 RAQL-NELQSLLCNTLQSIIRKVGSDIREVSD---QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK  640 (859)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHccccchhHHH---HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            0000 13444555555555443  22223333   366678888877 56677888888888887  3344444444337


Q ss_pred             HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhh-hhHHHHHHHHHH
Q 047123          457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEAL-NKKFPVMVTAAV  525 (579)
Q Consensus       457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~av~~L~~L  525 (579)
                      |.|..-|++-....|...+.+..+.|++.=+.--.... +.....|++.|.++.-+. +|-..+++..-+
T Consensus       641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDI  709 (859)
T KOG1241|consen  641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC-DELMTVLVQCLSSPNLHRNVKPAILSVFGDI  709 (859)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHccCccccccccchHHHHHHHH
Confidence            77777775555677888888888888875322222221 455678999998765332 444444544433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.15  E-value=2e-05  Score=66.81  Aligned_cols=123  Identities=17%  Similarity=0.086  Sum_probs=105.9

Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 047123          204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA  283 (579)
Q Consensus       204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~  283 (579)
                      +.+..||.-.....+.+.+++...-|.|.+. +|-+...+.+..+++.++.-|...+....+.+...|+|++.++.+...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            3455566533326788999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-hhHHHHHH
Q 047123          284 ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE-DIKAALAE  327 (579)
Q Consensus       284 i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~-~~~~~l~~  327 (579)
                      |.+.++++..+..+.+....+...++.++..|+..+ ..+..+..
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            999999999999999988888999999999888743 33444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=0.0027  Score=67.26  Aligned_cols=322  Identities=14%  Similarity=0.113  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHH-HHHHHHHHHHHhhccChhh
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSS-IREQAVLALSIIVSANDES  239 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~-~~~~A~~aL~~La~~~~~~  239 (579)
                      ....+.+.+.+.+.+...+..|...+..+..+.  ....+.+.+++..|-+... +.... -++.+..+....+. +-  
T Consensus       133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~-dk~~~~~re~~~~a~~~~~~-~L--  206 (569)
T KOG1242|consen  133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAII-DKKSALNREAALLAFEAAQG-NL--  206 (569)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhc-ccchhhcHHHHHHHHHHHHH-hc--
Confidence            345677788888888888999999998887543  4455567788888888887 55433 33323322222222 11  


Q ss_pred             HHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          240 RKIVFEEGGLGPLLRILE---TGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~---~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                       ...++.+.++.+-.+|.   +....+|..+..+...+-.  ++.....     .++.++.-+.........+++..+..
T Consensus       207 -g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~  280 (569)
T KOG1242|consen  207 -GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGA  280 (569)
T ss_pred             -CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence             12223344444444444   4467788877777666542  2111111     23555554444456778899999998


Q ss_pred             hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                      ++......-......+||.+.+.|.+..+.+++.+..+|.+++..-++ .. |  ...++.|+..+.+.+.   -...+.
T Consensus       281 m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~d-I--~~~ip~Lld~l~dp~~---~~~e~~  353 (569)
T KOG1242|consen  281 MADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PD-I--QKIIPTLLDALADPSC---YTPECL  353 (569)
T ss_pred             HHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HH-H--HHHHHHHHHHhcCccc---chHHHH
Confidence            888777777777788999999999999999999999999999863221 11 0  2346777777766542   223333


Q ss_pred             HHHHHcccchhHH-HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CChhhHHHHHHH-HHHHHHhccCCCCH
Q 047123          395 LAISSLSLSDSAA-RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISDGNKRAVASC-MGSLIKLMECPKPV  469 (579)
Q Consensus       395 ~aL~~L~~~~~~~-~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~~-v~~Lv~lL~~~~~~  469 (579)
                      ..|..-.+-..+. .-+.   -.++.|-.-+...+...++.++.++.|++   .++..-..+... +|.|-..+ ....+
T Consensus       354 ~~L~~ttFV~~V~~psLa---lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~-~d~~P  429 (569)
T KOG1242|consen  354 DSLGATTFVAEVDAPSLA---LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL-DDAVP  429 (569)
T ss_pred             HhhcceeeeeeecchhHH---HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh-cCCCh
Confidence            3333322221111 1111   12333444455567788899999999999   344444444444 77777777 33489


Q ss_pred             hHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCC
Q 047123          470 GLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK  509 (579)
Q Consensus       470 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~  509 (579)
                      ++|.-++.||+.+...-.+...    ...++.+...+...
T Consensus       430 EvR~vaarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~  465 (569)
T KOG1242|consen  430 EVRAVAARALGALLERLGEVSF----DDLIPELSETLTSE  465 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcc----cccccHHHHhhccc
Confidence            9999999999988754322221    34455566655443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.07  E-value=0.0013  Score=72.41  Aligned_cols=387  Identities=15%  Similarity=0.133  Sum_probs=213.2

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      ++-++.+|  ++.-.|..|+.++..++...-..-..-+-..+++.+..++. ......+...+.++..|.......-..-
T Consensus       613 L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr-K~~r~lr~~~l~a~~~L~~~~~~~~~~~  689 (1233)
T KOG1824|consen  613 LPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR-KNQRALRLATLTALDKLVKNYSDSIPAE  689 (1233)
T ss_pred             HHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            44455555  45567888888888887543222222233456788888887 4445556666666666554111111111


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh----hc--
Q 047123          244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI----AA--  317 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL----s~--  317 (579)
                      .-+.++..+-.++...+..+-..|..+|..+...+.....-....+++.++.+++++--  |..+..++-++    ..  
T Consensus       690 ~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~f~alV~t~  767 (1233)
T KOG1824|consen  690 LLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL--QGGALSALLLFFQALVITK  767 (1233)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHHHHHHHhcC
Confidence            11233445555556667778888888888888777777666667788888888876433  22222222111    00  


Q ss_pred             Ch----------------hh------HHH----------HHH-c-----CCHHHHH-HHhcC-CCHHHHHHHHHHHHHHh
Q 047123          318 VE----------------DI------KAA----------LAE-E-----GAVPVLV-QSLTS-SSNLAQENAADCIATLA  357 (579)
Q Consensus       318 ~~----------------~~------~~~----------l~~-~-----g~v~~Lv-~lL~~-~~~~v~~~a~~~L~~La  357 (579)
                      .+                +.      +..          +.. .     ..+..++ .+.+. .+..++.-|.-.++.+-
T Consensus       768 ~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElg  847 (1233)
T KOG1824|consen  768 EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELG  847 (1233)
T ss_pred             CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhc
Confidence            00                00      000          000 0     0111122 22222 24467777777777776


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h----hHHHHHhhcC----cHHHHHHHHHhcC
Q 047123          358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D----SAARILSSTT----SFIIQLGEFIKRG  427 (579)
Q Consensus       358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~----~~~~l~~~~~----g~i~~L~~lL~~~  427 (579)
                      ...+.    ....+.-..+++.+.+.+.  +++..|..||++++.+  +    ..-..++.++    -.+..|.+.+...
T Consensus       848 r~~~~----s~~~e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~  921 (1233)
T KOG1824|consen  848 RRKDL----SPQNELKDTIIEAFNSPSE--DVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSA  921 (1233)
T ss_pred             cCCCC----CcchhhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHh
Confidence            54322    1112333456666666665  8999999999999885  1    1111111100    1222344444444


Q ss_pred             CHHHHHHHHHHHHHhc-----CC-hhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123          428 NVLLQQVSSSLLGNLS-----IS-DGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR  489 (579)
Q Consensus       428 ~~~v~~~A~~aL~~L~-----~~-~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~  489 (579)
                      +.+....++.=+|.+-     .. +..|.-+.++            +|.|-..+ .+..+..|..+..+........+..
T Consensus       922 svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~ 1000 (1233)
T KOG1824|consen  922 SVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQP 1000 (1233)
T ss_pred             ccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCc
Confidence            3333333333333322     22 2334344444            66666667 6667777777777766655544332


Q ss_pred             hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHHHHhcCcc
Q 047123          490 KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRL  569 (579)
Q Consensus       490 ~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~~l~~~~~  569 (579)
                      -... ...-|...+.++++++.+ +++.++.++...+.+++     .++ .+..+.|..+++.++.--|++++...-|-|
T Consensus      1001 id~~-lk~~ig~fl~~~~dpDl~-VrrvaLvv~nSaahNKp-----slI-rDllpeLLp~Ly~eTkvrkelIreVeMGPF 1072 (1233)
T KOG1824|consen 1001 IDPL-LKQQIGDFLKLLRDPDLE-VRRVALVVLNSAAHNKP-----SLI-RDLLPELLPLLYSETKVRKELIREVEMGPF 1072 (1233)
T ss_pred             cCHH-HHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHccCH-----hHH-HHHHHHHHHHHHHhhhhhHhhhhhhcccCc
Confidence            2222 134567888889988888 88888888888877664     222 456777788888877777777777766665


Q ss_pred             h
Q 047123          570 K  570 (579)
Q Consensus       570 ~  570 (579)
                      +
T Consensus      1073 K 1073 (1233)
T KOG1824|consen 1073 K 1073 (1233)
T ss_pred             c
Confidence            5

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.0017  Score=67.62  Aligned_cols=310  Identities=15%  Similarity=0.175  Sum_probs=202.3

Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc--
Q 047123          158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS--  234 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~--  234 (579)
                      .....+|+-|-.++..-++..|..-+.-|.-+-...  ..+.+. -..+.+-|..+|. ++++++|..+-.++.++-.  
T Consensus       163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~Ls-D~s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLS-DSSDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHH
Confidence            334457888888888889999988888887774322  223332 3567888899999 8899999766665554432  


Q ss_pred             -cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH-HHHHHHH--
Q 047123          235 -ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL-TQSHAVG--  310 (579)
Q Consensus       235 -~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~a~~--  310 (579)
                       +.|+.-   --...++.++.-+.++.+.+|..|..-+..+..-+.......-.|++..++..+.+.... +.+.+..  
T Consensus       240 ~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  240 RSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             hcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence             033321   223578889999999999999999888888776555555555567777777777765553 3333332  


Q ss_pred             -HHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123          311 -AIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT  389 (579)
Q Consensus       311 -aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~  389 (579)
                       .|..+...+..+..+--...++.+.+++.+...+.+..++..+..+-...+. +-........+.|+.-+.+.++  .+
T Consensus       317 ~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd--~v  393 (675)
T KOG0212|consen  317 GLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD--EV  393 (675)
T ss_pred             HHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchh--HH
Confidence             2333444333333322233678888889999999999999999888664433 3333346677888888877776  89


Q ss_pred             HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCC
Q 047123          390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPK  467 (579)
Q Consensus       390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~  467 (579)
                      ...+...+.++|...+....  .  .++..|+++......-+...+.-+++.||  -+++..      ...+..+|+..+
T Consensus       394 vl~~L~lla~i~~s~~~~~~--~--~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I------Yr~~a~ILe~e~  463 (675)
T KOG0212|consen  394 VLLALSLLASICSSSNSPNL--R--KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI------YRSIADILEREE  463 (675)
T ss_pred             HHHHHHHHHHHhcCcccccH--H--HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH------HHHHHHHHhccc
Confidence            99999999999998322121  1  46667788887777778888888999998  555422      223333443333


Q ss_pred             CHhHHHHHHHHHHHhhcCC
Q 047123          468 PVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       468 ~~~v~~~a~~aL~~L~~~~  486 (579)
                      +...-.....+|.....++
T Consensus       464 nl~FAstMV~~Ln~iLlTS  482 (675)
T KOG0212|consen  464 NLKFASTMVQALNTILLTS  482 (675)
T ss_pred             cchHHHHHHHHHHhhhccc
Confidence            3444444445555544443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0039  Score=67.71  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=174.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      -.+..+..-|++.+.-+..-|+.+|+++++  ++...     +..|...++++ +.++-+|.+|+.|...+-...|+..+
T Consensus       107 LltNslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e  178 (866)
T KOG1062|consen  107 LLTNSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVE  178 (866)
T ss_pred             HHHHHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHH
Confidence            346677788899999999999999999984  44433     34677778999 99999999999998888776777776


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC---------------CCHHHH
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS---------------GTALTQ  305 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~---------------~~~~~~  305 (579)
                      .+     ++...++|.+.+..|.......+..++. +++.-..+-+  .++.++..|+.               .+|-+|
T Consensus       179 ~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ  251 (866)
T KOG1062|consen  179 HF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ  251 (866)
T ss_pred             Hh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence            66     6677788888777777777777777774 4444444433  44555554431               245567


Q ss_pred             HHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcCC----C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 047123          306 SHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSS----S--NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH  378 (579)
Q Consensus       306 ~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~----~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~  378 (579)
                      ...++.|+-|-.++. ..+.|.+     .|-+.....    +  ..+...++.++..+-... ..|.     -++..|-+
T Consensus       252 i~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~Lrv-----lainiLgk  320 (866)
T KOG1062|consen  252 IRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRV-----LAINILGK  320 (866)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHH-----HHHHHHHH
Confidence            777776666655332 2333322     222222111    1  134444555544443211 1121     13445555


Q ss_pred             hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHH----HHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHH
Q 047123          379 LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFII----QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS  454 (579)
Q Consensus       379 ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~----~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~  454 (579)
                      ++.+.+.  .++-.|...|..+...         ++.++.    .+++.|++.+..++..|...+..|......+..   
T Consensus       321 FL~n~d~--NirYvaLn~L~r~V~~---------d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m---  386 (866)
T KOG1062|consen  321 FLLNRDN--NIRYVALNMLLRVVQQ---------DPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM---  386 (866)
T ss_pred             HhcCCcc--ceeeeehhhHHhhhcC---------CcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH---
Confidence            5555443  4555555555544433         222332    477888999999999999999988744333322   


Q ss_pred             HHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          455 CMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       455 ~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                       +..|+.+| +..+.+.+..++.-+..++..
T Consensus       387 -v~eLl~fL-~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  387 -VKELLEFL-ESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             -HHHHHHHH-HhccHHHHHHHHHHHHHHHHh
Confidence             55677777 444777787777777777643

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.002  Score=68.74  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             chhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC--HHHHHHHHHHHHHhh
Q 047123          156 HKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ--SSIREQAVLALSIIV  233 (579)
Q Consensus       156 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~--~~~~~~A~~aL~~La  233 (579)
                      +.+-++..+..+-.-|.+.|+-...-|+.+++++...  +++..+.     +-+-++|- +++  .-++..|+-+|..|-
T Consensus       105 n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLv-S~~~~~~vkqkaALclL~L~  176 (938)
T KOG1077|consen  105 NSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLV-SGSSMDYVKQKAALCLLRLF  176 (938)
T ss_pred             chHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHh-CCcchHHHHHHHHHHHHHHH
Confidence            3455666677777888889999999999999998532  2332222     22225565 554  678888888888777


Q ss_pred             ccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123          234 SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT  275 (579)
Q Consensus       234 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls  275 (579)
                      ..+|+..   --.+....++.+|++.++.+...+...+..|+
T Consensus       177 r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lv  215 (938)
T KOG1077|consen  177 RKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALV  215 (938)
T ss_pred             hcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHH
Confidence            7444432   22245666777776665555555555555555

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0001  Score=75.94  Aligned_cols=189  Identities=11%  Similarity=0.071  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC
Q 047123          180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG  259 (579)
Q Consensus       180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~  259 (579)
                      ..++.+|..+.+.-.--+.-+.+...+++|+++|+ .++..+.-.+...+++........+..+.+.|.+..|+..+.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            34466666665544444555567888999999999 77766666778888888776777889999999999999999988


Q ss_pred             CHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----hhhHHHHHHcC----
Q 047123          260 SMPLKEKAAIGVEAITTDPE--NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV----EDIKAALAEEG----  329 (579)
Q Consensus       260 ~~~v~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~----~~~~~~l~~~g----  329 (579)
                      +...|.+..|.|.++..+.+  .+-.+...-++..++++++++...+|+.....|+|+..+    ++.++.+....    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            88999999999999996443  345666677889999999999999999999999999762    22222222111    


Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 047123          330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ  369 (579)
Q Consensus       330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~  369 (579)
                      ....++..+...+|-.....+..|.+++..++..+..+.+
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~  605 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS  605 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence            2344555566666654445567777776666665555443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.006  Score=63.80  Aligned_cols=371  Identities=15%  Similarity=0.075  Sum_probs=213.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH--HH--
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR--KI--  242 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~--~~--  242 (579)
                      ..+.-+..+.+.+..|.-||..++.-..+..+...+.-.-....+.++ +++.++...|+..-..++...-+..  ..  
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mk-s~nd~va~qavEfWsticeEeid~~~e~~~~  304 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMK-SQNDEVAIQAVEFWSTICEEEIDGEMEDKYL  304 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence            345556778899999999999998766666666666666666777888 9999999999999888876211110  00  


Q ss_pred             ---------HH---hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH----HhcC
Q 047123          243 ---------VF---EEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE----AFRS  299 (579)
Q Consensus       243 ---------i~---~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~----ll~~  299 (579)
                               +.   -..++|.|+.+|...       +-.+...|..+|.-.+....       .-.+++...    -+++
T Consensus       305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g-------d~i~~pVl~FvEqni~~  377 (858)
T COG5215         305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG-------DKIMRPVLGFVEQNIRS  377 (858)
T ss_pred             ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh-------hHhHHHHHHHHHHhccC
Confidence                     11   134789999999762       33456666777766653211       113333333    3456


Q ss_pred             CCHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 047123          300 GTALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLM  377 (579)
Q Consensus       300 ~~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv  377 (579)
                      ++..-++.++.++..+-..+  ..+..++ ..++|.+...+.+..--++..++||++.++.+   ....+-..|-++..+
T Consensus       378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~v  453 (858)
T COG5215         378 ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEV  453 (858)
T ss_pred             chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHH
Confidence            77788999999998886633  3344444 35788888888877778999999999999863   222332344443333


Q ss_pred             Hhh-ccCCCChHHHHHHHHHHHHcccc--hhH---HHHHhh-cCcHHHHHHH---------------------HHhc---
Q 047123          378 HLI-QDSTSSIVTVENALLAISSLSLS--DSA---ARILSS-TTSFIIQLGE---------------------FIKR---  426 (579)
Q Consensus       378 ~ll-~~~~~~~~~~~~A~~aL~~L~~~--~~~---~~l~~~-~~g~i~~L~~---------------------lL~~---  426 (579)
                      +.+ ..-.+++....++++...||..+  +..   ..++.. =...+..|++                     ++.-   
T Consensus       454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD  533 (858)
T ss_pred             HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence            322 11112235667777777777664  111   011100 0000001110                     0000   


Q ss_pred             ------------------------------C----CHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHh
Q 047123          427 ------------------------------G----NVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVG  470 (579)
Q Consensus       427 ------------------------------~----~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~  470 (579)
                                                    .    ..++|.+-...|..+. ..+.-.+...+. +..++++|+..++..
T Consensus       534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~  613 (858)
T COG5215         534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTT  613 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCch
Confidence                                          0    0112222222222222 111111112222 677788886666777


Q ss_pred             HHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123          471 LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA  550 (579)
Q Consensus       471 v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~  550 (579)
                      +-+-...++++|+..-+.+-+.-. ...+|.|.+-|+..+.. +-..+++.+..|+.+-.  ..-.+........|++-+
T Consensus       614 ~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~d~~-v~~~avglvgdlantl~--~df~~y~d~~ms~LvQ~l  689 (858)
T COG5215         614 AFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCTDRF-VLNSAVGLVGDLANTLG--TDFNIYADVLMSSLVQCL  689 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcchhHH-HHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence            777788888888875443333332 56778888888655444 55667777777776543  333344455566677766


Q ss_pred             ccC
Q 047123          551 ETE  553 (579)
Q Consensus       551 ~~~  553 (579)
                      .++
T Consensus       690 ss~  692 (858)
T COG5215         690 SSE  692 (858)
T ss_pred             cCh
Confidence            665

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.93  E-value=0.005  Score=66.19  Aligned_cols=368  Identities=13%  Similarity=0.103  Sum_probs=186.8

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 047123          175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR  254 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~  254 (579)
                      +.+.|.....+...++.-... ...-.-.+.+..+-..|. +.+..+|..++-++..++....-+.-.-++ .++.+|.+
T Consensus       525 SwqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~gl~-De~qkVR~itAlalsalaeaa~Pygie~fD-sVlkpLwk  601 (1172)
T KOG0213|consen  525 SWQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEHGLK-DEQQKVRTITALALSALAEAATPYGIEQFD-SVLKPLWK  601 (1172)
T ss_pred             chhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHHhhc-ccchhhhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHH
Confidence            666776666666555421100 000011222333334455 566788888888888887622222211111 12333333


Q ss_pred             HHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHH
Q 047123          255 ILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVP  332 (579)
Q Consensus       255 lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~  332 (579)
                      =..++....-..-..++..|..  +++.. ......++..++.-..+.|.+.+...+.++..+|..+..-........+|
T Consensus       602 gir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp  680 (1172)
T KOG0213|consen  602 GIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILP  680 (1172)
T ss_pred             HHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhH
Confidence            3333333334444556666663  22221 12223345666666778888999999999999988776666666556677


Q ss_pred             HHHHHhcCC-------C-HHHHHHHHHHHHHHh-------------cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHH
Q 047123          333 VLVQSLTSS-------S-NLAQENAADCIATLA-------------ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       333 ~Lv~lL~~~-------~-~~v~~~a~~~L~~La-------------~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~  391 (579)
                      .++..+-..       + ..+...+...-..+-             ..++.+|.+.  .+.+..++..+-...-++...+
T Consensus       681 ~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~--~etv~ri~~~lg~~diderleE  758 (1172)
T KOG0213|consen  681 EFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMV--AETVSRIVGRLGAADIDERLEE  758 (1172)
T ss_pred             HHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHH--HHHHHHHHhccccccccHHHHH
Confidence            766554211       1 112222222111111             1111122211  1223333333322221112222


Q ss_pred             HHHHHH-HHcccch------------hHHHHHhh----cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhH---HH
Q 047123          392 NALLAI-SSLSLSD------------SAARILSS----TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNK---RA  451 (579)
Q Consensus       392 ~A~~aL-~~L~~~~------------~~~~l~~~----~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~---~~  451 (579)
                      .-...| ..+....            ....+...    -+-.+...+..|++.++.+++.|+..+..|+.--..+   +.
T Consensus       759 ~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~  838 (1172)
T KOG0213|consen  759 RLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL  838 (1172)
T ss_pred             HHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            211111 1111110            01111110    0023444666788999999999999999998211111   11


Q ss_pred             HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-
Q 047123          452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-  530 (579)
Q Consensus       452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-  530 (579)
                      +...=-.|...| ....+++.-....||..+.+....-+.+---.+.++.|.-.|.+++.. +++..+..+..++...+ 
T Consensus       839 m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheK-Vqen~IdLvg~IadrgpE  916 (1172)
T KOG0213|consen  839 MGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK-VQENCIDLVGTIADRGPE  916 (1172)
T ss_pred             HHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHH-HHHHHHHHHHHHHhcCcc
Confidence            222123556677 677889988888888887765433222222246778899999988877 78888888888876553 


Q ss_pred             -hhHHHHHHHcCchHHHHhhhccC
Q 047123          531 -NGCRKRLVAAGAYQHLQKLAETE  553 (579)
Q Consensus       531 -~~~r~~i~~~g~~~~L~~L~~~~  553 (579)
                       ...|+.|.   ++-.|+.++++.
T Consensus       917 ~v~aREWMR---IcfeLlelLkah  937 (1172)
T KOG0213|consen  917 YVSAREWMR---ICFELLELLKAH  937 (1172)
T ss_pred             cCCHHHHHH---HHHHHHHHHHHH
Confidence             23566665   455566666554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.90  E-value=0.0058  Score=62.79  Aligned_cols=218  Identities=20%  Similarity=0.225  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ..++.+...+.+.++.+|..|+.+|+.+-  +         ...++.|++++..+++..+|..++.+|+.+..       
T Consensus        74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~---------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------  135 (335)
T COG1413          74 EAVPLLRELLSDEDPRVRDAAADALGELG--D---------PEAVPPLVELLENDENEGVRAAAARALGKLGD-------  135 (335)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHccC--C---------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------
Confidence            36899999999999999999999887773  2         33589999988834789999999999999988       


Q ss_pred             HHHhcCCHHHHHHHHccCCH------------HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Q 047123          242 IVFEEGGLGPLLRILETGSM------------PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAV  309 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~------------~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~  309 (579)
                          ...+.+++..+.+...            .++..+...|..+-.          ...++.+..++.+.+..++..+.
T Consensus       136 ----~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa  201 (335)
T COG1413         136 ----ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAA  201 (335)
T ss_pred             ----hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHH
Confidence                4568899999988652            244455555544432          33678899999999999999999


Q ss_pred             HHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123          310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT  389 (579)
Q Consensus       310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~  389 (579)
                      .+|..+....        ....+.+...+.+.+..++..++..|..+-.           ...+..+...+...+.  ..
T Consensus       202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~--~~  260 (335)
T COG1413         202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALEDEDV--IL  260 (335)
T ss_pred             HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhccch--HH
Confidence            9998877654        3456777888899999999999988887644           2235666666666654  34


Q ss_pred             HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      ...+..++..+-..           .....+...+.+....++..+..++..+.
T Consensus       261 ~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         261 ALLAAAALGALDLA-----------EAALPLLLLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             HHHHHHHhcccCch-----------hhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence            44443333311111           23445555666666677777776666665

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.90  E-value=0.0031  Score=65.19  Aligned_cols=254  Identities=18%  Similarity=0.112  Sum_probs=163.9

Q ss_pred             HHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC--CH
Q 047123          184 ESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG--SM  261 (579)
Q Consensus       184 ~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~  261 (579)
                      ..|..+.+..+.-+..+.-..+.+.+..++- +++.++|-.+.++++.+.. +++....+.+.+.---++.-|...  +.
T Consensus         5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL-~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~   82 (371)
T PF14664_consen    5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL-SDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND   82 (371)
T ss_pred             HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence            3455555556655555554455666665444 5559999999999999999 889999999888777777777664  44


Q ss_pred             HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCC
Q 047123          262 PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS  341 (579)
Q Consensus       262 ~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~  341 (579)
                      .-+++|...+..+...+..... ...|+++.++.+..+.+...+..+..+|+.++..  +.+-+.+.|++..+++.+.++
T Consensus        83 ~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~  159 (371)
T PF14664_consen   83 VEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDG  159 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhc
Confidence            5688999999888754333222 2567889999999999999999999999999873  234566899999999999877


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC-----CCh--HHHHHHHHHHHHcccc-hhHHHHHhhc
Q 047123          342 SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST-----SSI--VTVENALLAISSLSLS-DSAARILSST  413 (579)
Q Consensus       342 ~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~-----~~~--~~~~~A~~aL~~L~~~-~~~~~l~~~~  413 (579)
                      ...+.+..+.++..+...+ ..|..+...--++.++.-+.+..     .+.  +....+..++..+-.. +..-.+-..+
T Consensus       160 ~~~~~~~l~~~lL~lLd~p-~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  160 SFSISESLLDTLLYLLDSP-RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             cHhHHHHHHHHHHHHhCCc-chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            6678888888888887754 44655555445666666443331     111  1122222222222221 1111111111


Q ss_pred             CcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       414 ~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      ..++..|+..|...+++++......+..+-
T Consensus       239 ~~~lksLv~~L~~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            135555666666666666665555555554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.88  E-value=3.2e-05  Score=52.58  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=38.3

Q ss_pred             ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          193 DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       193 ~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      +++++..+++.|++|.|+++|+ ++++++++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence            4678899999999999999999 9999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0045  Score=67.05  Aligned_cols=320  Identities=15%  Similarity=0.129  Sum_probs=177.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      |..+.+-|...++..|..|++.|..+=-       -++..=.+-.+-+... +..+-+|..|+-+|-.|=.-+++.+.++
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd~e~k~qL  181 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLDPEQKDQL  181 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence            5566666777777777777777755411       0000001111222334 5667788888777777755455655544


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----h
Q 047123          244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV----E  319 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~----~  319 (579)
                           +..+-.+|.+.++-|...|+.+....+-  +.-..|  ++--+.|+.++.+-+..-|...+..|..-+.+    |
T Consensus       182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P  252 (968)
T KOG1060|consen  182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP  252 (968)
T ss_pred             -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence                 4455566677777777777766666652  222222  33345666666655555555555555443321    1


Q ss_pred             hhHHHHH-H--------------------cCCHHHHH----HHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123          320 DIKAALA-E--------------------EGAVPVLV----QSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQ  374 (579)
Q Consensus       320 ~~~~~l~-~--------------------~g~v~~Lv----~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~  374 (579)
                      ..-.... +                    .--+..|+    .++.+.++.+...++.+.+.++.....       .++++
T Consensus       253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~k  325 (968)
T KOG1060|consen  253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIAK  325 (968)
T ss_pred             cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHHH
Confidence            0000000 0                    00111222    344667888888899999998864322       44578


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcH-HHHHHHHH--hcCCHHHHHHHHHHHHHhcCChhhHHH
Q 047123          375 RLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSF-IIQLGEFI--KRGNVLLQQVSSSLLGNLSISDGNKRA  451 (579)
Q Consensus       375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~-i~~L~~lL--~~~~~~v~~~A~~aL~~L~~~~~~~~~  451 (579)
                      .|+++|.+..   .+|...+..|..++...         ++. .+.+-.+.  .++...++..-..+|.+|+........
T Consensus       326 aLvrLLrs~~---~vqyvvL~nIa~~s~~~---------~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~I  393 (968)
T KOG1060|consen  326 ALVRLLRSNR---EVQYVVLQNIATISIKR---------PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEI  393 (968)
T ss_pred             HHHHHHhcCC---cchhhhHHHHHHHHhcc---------hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHH
Confidence            9999888766   47777777777666540         022 22222221  233445666667778888733222222


Q ss_pred             HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                          ++.|...+ ++.+..+-..+.++|+..+.....    + ....+..|+++|.+++.. +...++.++..|-...+
T Consensus       394 ----LrE~q~YI-~s~d~~faa~aV~AiGrCA~~~~s----v-~~tCL~gLv~Llsshde~-Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  394 ----LRELQTYI-KSSDRSFAAAAVKAIGRCASRIGS----V-TDTCLNGLVQLLSSHDEL-VVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             ----HHHHHHHH-hcCchhHHHHHHHHHHHHHHhhCc----h-hhHHHHHHHHHHhcccch-hHHHHHHHHHHHHhhCh
Confidence                22333444 333445777777888777654321    1 245567899999988777 44555666777766654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=2e-05  Score=53.62  Aligned_cols=40  Identities=25%  Similarity=0.546  Sum_probs=38.0

Q ss_pred             ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123          236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT  275 (579)
Q Consensus       236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls  275 (579)
                      +++++..+++.|++++|+++|++++.++++.|+++|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.015  Score=62.64  Aligned_cols=218  Identities=14%  Similarity=0.087  Sum_probs=133.6

Q ss_pred             HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123          170 RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL  249 (579)
Q Consensus       170 ~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l  249 (579)
                      -|.+.+....--|+..|..+.  .+.-.+.     .-+-++.||. +..+-+|..|+.++..+..   .+.+.+.  -.+
T Consensus       117 dl~S~n~ye~giAL~GLS~fv--TpdLARD-----La~Dv~tLL~-sskpYvRKkAIl~lykvFL---kYPeAlr--~~F  183 (877)
T KOG1059|consen  117 DLNSSNVYEVGLALSGLSCIV--TPDLARD-----LADDVFTLLN-SSKPYVRKKAILLLYKVFL---KYPEALR--PCF  183 (877)
T ss_pred             HhccCccchhhheeccccccc--CchhhHH-----HHHHHHHHHh-cCchHHHHHHHHHHHHHHH---hhhHhHh--hhH
Confidence            344555555556666665554  3333322     2456788999 9999999999999999887   4555553  458


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH--------h--cC-----------------------cHHHHHH
Q 047123          250 GPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAIS--------A--YG-----------------------GVSVLIE  295 (579)
Q Consensus       250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~--------~--~g-----------------------~i~~Lv~  295 (579)
                      |.|..-|+++++.|+..|..+++.|+. +|.|...++        .  .+                       .+++|.+
T Consensus       184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~  263 (877)
T KOG1059|consen  184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITE  263 (877)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHH
Confidence            999999999999999999999999994 666543322        0  01                       1222222


Q ss_pred             HhcCCCH-HHHHHHHHHHH--HhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 047123          296 AFRSGTA-LTQSHAVGAIR--NIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER  371 (579)
Q Consensus       296 ll~~~~~-~~~~~a~~aL~--nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g  371 (579)
                      ++.+... .+...++.++.  |++.. +++- ..+. -++..|-.++.+.++.++..++-++..+...++..-..     
T Consensus       264 li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----  336 (877)
T KOG1059|consen  264 LMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----  336 (877)
T ss_pred             HHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----
Confidence            2222111 11122222221  22211 1111 1110 13455555667788888888888888888766542111     


Q ss_pred             cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH
Q 047123          372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI  409 (579)
Q Consensus       372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l  409 (579)
                      --+.+++.|.+.+.  .++..|+..|..+...++...+
T Consensus       337 ~kdlIlrcL~DkD~--SIRlrALdLl~gmVskkNl~eI  372 (877)
T KOG1059|consen  337 HKDLILRCLDDKDE--SIRLRALDLLYGMVSKKNLMEI  372 (877)
T ss_pred             hHHHHHHHhccCCc--hhHHHHHHHHHHHhhhhhHHHH
Confidence            13456777777776  7899999999998887554443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.84  E-value=0.0023  Score=66.04  Aligned_cols=242  Identities=14%  Similarity=0.066  Sum_probs=176.8

Q ss_pred             CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC--CCHHHHHHHHHHHH
Q 047123          277 DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS--SSNLAQENAADCIA  354 (579)
Q Consensus       277 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~  354 (579)
                      +++.+..+.-....+.+..++-+++..++..+.++++.+..+++.-..+.+.+.--.++.-|..  .+..=+++|+..+.
T Consensus        14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR   93 (371)
T PF14664_consen   14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR   93 (371)
T ss_pred             CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence            4444444443344455554555556999999999999999998888888887755556666643  34556788999888


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123          355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQV  434 (579)
Q Consensus       355 ~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~  434 (579)
                      .+.......  .-...|.+..++.+.+..++  ..+..|..+|..++.. +.+.+...  |++..|++.+-.+..++.+.
T Consensus        94 ~~l~~~~~~--~~~~~~vvralvaiae~~~D--~lr~~cletL~El~l~-~P~lv~~~--gG~~~L~~~l~d~~~~~~~~  166 (371)
T PF14664_consen   94 AFLEIKKGP--KEIPRGVVRALVAIAEHEDD--RLRRICLETLCELALL-NPELVAEC--GGIRVLLRALIDGSFSISES  166 (371)
T ss_pred             HHHHhcCCc--ccCCHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHhh-CHHHHHHc--CCHHHHHHHHHhccHhHHHH
Confidence            877642221  12346778999999888665  8999999999998876 33455567  99999999998887788888


Q ss_pred             HHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC------CCH--hHHHHHHHHHHHhhcCCcchhHHHhhc-ccHHHHH
Q 047123          435 SSSLLGNLSISDGNKRAVASC--MGSLIKLMECP------KPV--GLQEAATDAVLSLLTVRSNRKELVRDE-KSVMRLM  503 (579)
Q Consensus       435 A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~------~~~--~v~~~a~~aL~~L~~~~~~~~~~~~~~-~~i~~Lv  503 (579)
                      .+.++..+-.+|..|+++...  ++.++.-..+.      ++.  +--..+..++..+.++.+..-.+..++ .++..|+
T Consensus       167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv  246 (371)
T PF14664_consen  167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV  246 (371)
T ss_pred             HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence            889999999999999988775  66665543122      122  355678888999888887766666555 7899999


Q ss_pred             hhcCCCchhhhhHHHHHHHHHHh
Q 047123          504 QMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       504 ~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      +.|.-+.++ .++..+..+..+.
T Consensus       247 ~~L~~p~~~-ir~~Ildll~dll  268 (371)
T PF14664_consen  247 DSLRLPNPE-IRKAILDLLFDLL  268 (371)
T ss_pred             HHHcCCCHH-HHHHHHHHHHHHH
Confidence            999988877 7888887777655

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.84  E-value=0.0061  Score=65.53  Aligned_cols=296  Identities=11%  Similarity=0.084  Sum_probs=171.1

Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 047123          207 GYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA  286 (579)
Q Consensus       207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~  286 (579)
                      -.+.+=.. ++|.+.....+.++..+|. .+..-...+....+|.++.......+..-..--.-|...+.  +.+..+..
T Consensus       639 lil~rEf~-sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv--~ia~KvG~  714 (1172)
T KOG0213|consen  639 LILIREFG-SPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV--EIAAKVGS  714 (1172)
T ss_pred             HHHHHhhC-CChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH--HHHHHhCc
Confidence            33444445 7888999999999999998 77777777778888888887654321110000011111110  11222333


Q ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---hhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCh
Q 047123          287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV---EDIKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGE  361 (579)
Q Consensus       287 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~---~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~  361 (579)
                      ...|..++.=+.++.+..+.-+..++.++...   .+.-.. .++..+..++..++.+  +..+.-....++.|--..  
T Consensus       715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--  791 (1172)
T KOG0213|consen  715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--  791 (1172)
T ss_pred             hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--
Confidence            34567777777788887777666666554321   111111 1223444555555433  223333444443331110  


Q ss_pred             hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCc-HHHHHHHHHhcCCHHHHHHHHHHH
Q 047123          362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTS-FIIQLGEFIKRGNVLLQQVSSSLL  439 (579)
Q Consensus       362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g-~i~~L~~lL~~~~~~v~~~A~~aL  439 (579)
                        |..-.-...+...+..|.+.+.  .++..|+..+..++.- ..+...-..  | .--.|.+.|....+++.-..+.|+
T Consensus       792 --r~kpylpqi~stiL~rLnnksa--~vRqqaadlis~la~Vlktc~ee~~m--~~lGvvLyEylgeeypEvLgsILgAi  865 (1172)
T KOG0213|consen  792 --RVKPYLPQICSTILWRLNNKSA--KVRQQAADLISSLAKVLKTCGEEKLM--GHLGVVLYEYLGEEYPEVLGSILGAI  865 (1172)
T ss_pred             --ccccchHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhccHHHHH--HHhhHHHHHhcCcccHHHHHHHHHHH
Confidence              0000001234455556666665  8999999999988876 433222111  2 222477778888888887777777


Q ss_pred             HHhcCChhh---HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhh
Q 047123          440 GNLSISDGN---KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEAL  513 (579)
Q Consensus       440 ~~L~~~~~~---~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~  513 (579)
                      +.+...-..   ..-+.+-+|.|.-+| +.++..+++++...++.++...+..   ++.+   +..-.|+++|...+.. 
T Consensus       866 kaI~nvigm~km~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~-  940 (1172)
T KOG0213|consen  866 KAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKE-  940 (1172)
T ss_pred             HHHHHhccccccCCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHH-
Confidence            777632222   223333389999999 8889999999999999998765542   2222   2345688888877766 


Q ss_pred             hhHHHHH
Q 047123          514 NKKFPVM  520 (579)
Q Consensus       514 ~k~~av~  520 (579)
                      .++.++.
T Consensus       941 iRRaa~n  947 (1172)
T KOG0213|consen  941 IRRAAVN  947 (1172)
T ss_pred             HHHHHHh
Confidence            5665554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=0.001  Score=73.73  Aligned_cols=222  Identities=15%  Similarity=0.193  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHh-hccChhhHHHHHhcCCHHHHHHHH
Q 047123          178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSII-VSANDESRKIVFEEGGLGPLLRIL  256 (579)
Q Consensus       178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~L-a~~~~~~~~~i~~~g~l~~Lv~lL  256 (579)
                      -|..|+..|..+..-.+=.+.....-|..|..++||+ ++..+.+..-+.+-..| +. ++.|+..++.+++-.-++++|
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEe
Confidence            3678888888888777777777788999999999999 98888888776666644 55 899999999999999999999


Q ss_pred             ccC---CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-ChhhHHHHHHcCC
Q 047123          257 ETG---SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA-VEDIKAALAEEGA  330 (579)
Q Consensus       257 ~~~---~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~  330 (579)
                      ..+   +++-+..++-+|..++. .+-.+....+.+.+..-++++.++ .+-++...+-+|..|-. +++.|-.-.+.++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            873   56889999999999996 445677777888888888999885 67888999999999976 5666666668889


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----hhhHHH-----------H-HhcCcH---HHHHHhhccCCCChHHHH
Q 047123          331 VPVLVQSLTSSSNLAQENAADCIATLAASG----EYFRLL-----------I-IQERGL---QRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~----~~~r~~-----------l-~~~g~i---~~Lv~ll~~~~~~~~~~~  391 (579)
                      .+.|+.+|.+..++|+..|+.+|..+....    ++....           + ++.-..   ..++.++..+++  -++.
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp--lvr~  721 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP--LVRT  721 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch--HHHH
Confidence            999999999999999999999999987631    111111           1 111112   245555555554  5666


Q ss_pred             HHHHHHHHcccc
Q 047123          392 NALLAISSLSLS  403 (579)
Q Consensus       392 ~A~~aL~~L~~~  403 (579)
                      ..+-+|..+..+
T Consensus       722 ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  722 EVVVALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHHHHh
Confidence            666666666654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.76  E-value=0.0066  Score=67.00  Aligned_cols=342  Identities=12%  Similarity=0.153  Sum_probs=184.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE  245 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~  245 (579)
                      .|+..+.+.|-+.|..|..-|..-...+......=.+...+..++++|+ +.+.++|..|+++|+-|+..-++.+-.   
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsKvke~~le---   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSKVKEDQLE---   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhhchHHHHH---
Confidence            4555555666666666655554433222111111224556889999999 999999999999999998733333321   


Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhc-
Q 047123          246 EGGLGPLLRILETGSMPLKEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRSG------TALTQSHAVGAIRNIAA-  317 (579)
Q Consensus       246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~~------~~~~~~~a~~aL~nLs~-  317 (579)
                       ..+..|+.-+-++....+.-+...|.. ++.-++....+....+++.+...+...      ...++..++..+.-+-. 
T Consensus        85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence             123344444444444333333333322 222333333344444555555544432      22355555555543322 


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      ..+.-.. .+.+....++.-+.+....++.+++.+|+.++..-+.  .  .-.+.++.|++-|..... ......-..+|
T Consensus       164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~--ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--D--LYVELIEHLLKGLSNRTQ-MSATRTYIQCL  237 (1233)
T ss_pred             hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--H--HHHHHHHHHHhccCCCCc-hHHHHHHHHHH
Confidence            1110000 2334455555566777778999999999999874322  1  112345555554444332 23444555666


Q ss_pred             HHcccc-hhHHHHHhhcCcHHHHHHHHH---hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhcc-------
Q 047123          398 SSLSLS-DSAARILSSTTSFIIQLGEFI---KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLME-------  464 (579)
Q Consensus       398 ~~L~~~-~~~~~l~~~~~g~i~~L~~lL---~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~-------  464 (579)
                      ..+|.. ..+  +-.+....++.+.++.   +..+.+.++....++..+- ..|...-.+... +..+++.+.       
T Consensus       238 ~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  238 AAICRQAGHR--FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHHhcch--hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCC
Confidence            666664 111  1111114677778887   7788899999998888776 444433333333 333333321       


Q ss_pred             ------------CCC--------------CHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHH
Q 047123          465 ------------CPK--------------PVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKF  517 (579)
Q Consensus       465 ------------~~~--------------~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~  517 (579)
                                  +.+              +..||.+|+.++..+...... ...+.+  ..-+.++.-+.+++++ +|.-
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q--~l~p~lI~RfkEREEn-Vk~d  392 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ--TLGPALISRFKEREEN-VKAD  392 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH--HhCHHHHHHHHHHhhh-HHHH
Confidence                        111              346899999999998765433 333333  2225677777777776 4444


Q ss_pred             HHHHHH
Q 047123          518 PVMVTA  523 (579)
Q Consensus       518 av~~L~  523 (579)
                      .+.++.
T Consensus       393 vf~~yi  398 (1233)
T KOG1824|consen  393 VFHAYI  398 (1233)
T ss_pred             HHHHHH
Confidence            443333

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.011  Score=60.21  Aligned_cols=263  Identities=13%  Similarity=0.100  Sum_probs=171.1

Q ss_pred             HHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh------h----hHHHHHHcCCHHHHHHHhc
Q 047123          270 GVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE------D----IKAALAEEGAVPVLVQSLT  339 (579)
Q Consensus       270 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~------~----~~~~l~~~g~v~~Lv~lL~  339 (579)
                      -+.-++..|+.-..+++.++++.|+++|.+++.++....+..|..|+..+      +    .-..+++.++++.|++-+.
T Consensus       107 ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve  186 (536)
T KOG2734|consen  107 EMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE  186 (536)
T ss_pred             HHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence            35567778888889999999999999999999999999999999987522      1    2455778899999998874


Q ss_pred             CCC------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHh
Q 047123          340 SSS------NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILS  411 (579)
Q Consensus       340 ~~~------~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~  411 (579)
                      .=+      ..-...+...+-|+....+.+...+++.|.+.-|+.-+....+-...+..|..+|.-+-..  +++..+..
T Consensus       187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~  266 (536)
T KOG2734|consen  187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP  266 (536)
T ss_pred             HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence            322      2345667888899998888888888888888877764544432236788888888877766  34444444


Q ss_pred             hcCcHHHHHHHHH---hcCC---HHHHHHH---HHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          412 STTSFIIQLGEFI---KRGN---VLLQQVS---SSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       412 ~~~g~i~~L~~lL---~~~~---~~v~~~A---~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      -  .++..++.-+   +..+   .+-++..   -..|+.+-..++++..|...  +....=+++.  ....+..+..+|-
T Consensus       267 l--~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd  342 (536)
T KOG2734|consen  267 L--DGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLD  342 (536)
T ss_pred             c--ccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHH
Confidence            4  5666555544   2222   2233444   44444444888999988877  4433334422  2455788889998


Q ss_pred             HhhcCCc---chhHHHhhcccHHHHHhhcC-CCc--------hhhhhHHHHHHHHHHhCCCChhHHHHH
Q 047123          481 SLLTVRS---NRKELVRDEKSVMRLMQMLD-PKN--------EALNKKFPVMVTAAVLGGGSNGCRKRL  537 (579)
Q Consensus       481 ~L~~~~~---~~~~~~~~~~~i~~Lv~lL~-~~~--------~~~~k~~av~~L~~L~~~~~~~~r~~i  537 (579)
                      .....++   ++..++ +..|+..+..+-- .+.        ....-+...++|+++..+-+..+|.++
T Consensus       343 ~am~g~~gt~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r~R~  410 (536)
T KOG2734|consen  343 HAMFGPEGTPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHRQRL  410 (536)
T ss_pred             HHHhCCCchHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            8876544   566777 4667666554332 211        111334455566655543332255544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.0093  Score=63.34  Aligned_cols=302  Identities=13%  Similarity=0.116  Sum_probs=185.5

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI  284 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i  284 (579)
                      .+..|..-++ .+++.+|+....+|..+.. ..++...   .-..+-+.+++......-+..++..++.+..+ ..-..+
T Consensus        97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~-~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELD-TPSKSVQRAVSTCLPPLVV-LSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESL  170 (569)
T ss_pred             HHHHHHHhcC-CCcHHHHHHHHHHhhhHHH-HhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhh
Confidence            4667777777 8889999998888887765 2222111   12466778888888888899999999988754 234456


Q ss_pred             HhcCcHHHHHHHhcCCCHHHHHH-HHHHHHHhhcChhhHHHHHHcC---CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123          285 SAYGGVSVLIEAFRSGTALTQSH-AVGAIRNIAAVEDIKAALAEEG---AVPVLVQSLTSSSNLAQENAADCIATLAASG  360 (579)
Q Consensus       285 ~~~g~i~~Lv~ll~~~~~~~~~~-a~~aL~nLs~~~~~~~~l~~~g---~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~  360 (579)
                      .+.+.+..|.....+........ +.-+.-..+.+-.   ...+-.   .+|.++..+.+....++..+..+...+...-
T Consensus       171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~  247 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL  247 (569)
T ss_pred             hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc
Confidence            66778888888888765543332 2222211111100   111222   3444444556667788888887776654321


Q ss_pred             hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047123          361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL  439 (579)
Q Consensus       361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL  439 (579)
                      +...   + .-.++.++.-+.....  ..+..++..+..++.+ +..-.....  .+++.+.+.|.+.++++|..+..++
T Consensus       248 ~~~a---V-K~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp--~iiP~lsevl~DT~~evr~a~~~~l  319 (569)
T KOG1242|consen  248 SAYA---V-KLLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLP--DLIPVLSEVLWDTKPEVRKAGIETL  319 (569)
T ss_pred             Ccch---h-hHhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHh--HhhHHHHHHHccCCHHHHHHHHHHH
Confidence            1100   0 1224444443333344  6788999999999888 555555555  7999999999999999999999999


Q ss_pred             HHhc---CChhhHHHH---HHH--------------------------------HHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123          440 GNLS---ISDGNKRAV---ASC--------------------------------MGSLIKLMECPKPVGLQEAATDAVLS  481 (579)
Q Consensus       440 ~~L~---~~~~~~~~i---~~~--------------------------------v~~Lv~lL~~~~~~~v~~~a~~aL~~  481 (579)
                      .+++   .|++..+.+   .++                                +|.|.+-+ ...+...+..++.+.+|
T Consensus       320 ~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l-~eRst~~kr~t~~IidN  398 (569)
T KOG1242|consen  320 LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGL-AERSTSIKRKTAIIIDN  398 (569)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHH-hhccchhhhhHHHHHHH
Confidence            9888   555543321   111                                33344444 34466777888999999


Q ss_pred             hhcCCcchhHHHhh-cccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123          482 LLTVRSNRKELVRD-EKSVMRLMQMLDPKNEALNKKFPVMVTAAV  525 (579)
Q Consensus       482 L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L  525 (579)
                      ++.--++.+.+..= ...++.|-..+.+..++ .|..+..+|..+
T Consensus       399 m~~LveDp~~lapfl~~Llp~lk~~~~d~~PE-vR~vaarAL~~l  442 (569)
T KOG1242|consen  399 MCKLVEDPKDLAPFLPSLLPGLKENLDDAVPE-VRAVAARALGAL  442 (569)
T ss_pred             HHHhhcCHHHHhhhHHHHhhHHHHHhcCCChh-HHHHHHHHHHHH
Confidence            98755443332210 22334444455555555 666666666444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0022  Score=69.54  Aligned_cols=305  Identities=16%  Similarity=0.117  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      .-+..++...++++++.+|..|+.+...+-..+   ...+...|+++.|..++. +.++.+..+|+.+|..+...+++..
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~  195 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVN  195 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCC
Confidence            346789999999999999999999998885443   455678999999999999 9999999999999999988444311


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN--AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      ...+..-.+..++..+..-+   ...-+.+|..++.+-..  ..+   ...+..+...+++.++.++-.+..++.++...
T Consensus       196 ~~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~  269 (734)
T KOG1061|consen  196 LLELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKY  269 (734)
T ss_pred             cccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence            11111112333333333322   23333344444422111  111   12456666677777776777777777666553


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-hH------------------------HHHHhcCcH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY-FR------------------------LLIIQERGL  373 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~-~r------------------------~~l~~~g~i  373 (579)
                      ............-++++.++.+.. .++..++.=+.-+-...+. .+                        ..+.....+
T Consensus       270 ~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl  348 (734)
T KOG1061|consen  270 LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL  348 (734)
T ss_pred             HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence            222223333345556666665554 4444333222222111111 00                        000000011


Q ss_pred             -HHHHHhhccCC-CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhH
Q 047123          374 -QRLMHLIQDST-SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNK  449 (579)
Q Consensus       374 -~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~  449 (579)
                       +.+-++..... -+.+....+++++.+++.. +..     .  +.+..|+++++..-.-+.+.+...++.+- ..|..-
T Consensus       349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~--~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~  421 (734)
T KOG1061|consen  349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----N--DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY  421 (734)
T ss_pred             HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----h--hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch
Confidence             11111221111 1134555566666666554 111     2  56666777776555545555555566555 344332


Q ss_pred             HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +.+   +..+..-++.-++++.+.+-.+.++.-+..-
T Consensus       422 ~~v---v~~l~~~~~sl~epeak~amiWilg~y~~~i  455 (734)
T KOG1061|consen  422 ESV---VAILCENLDSLQEPEAKAALIWILGEYAERI  455 (734)
T ss_pred             hhh---hhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence            211   4444444433345666666666666655443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.024  Score=61.69  Aligned_cols=284  Identities=11%  Similarity=0.129  Sum_probs=174.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF  244 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~  244 (579)
                      .+|..+|.+.....+.+|+.-|..+...+.+.      ....|..|+... +.+.+++.-.--.|...+. ....-..+ 
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAE-eqpdLALL-  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAE-EQPDLALL-  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhh-cCCCceee-
Confidence            57899999999899999988888776544432      234677888887 8889998887767777776 22222111 


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHH
Q 047123          245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKA  323 (579)
Q Consensus       245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~  323 (579)
                         -|..+-+.|+++++.+|..|.++|..+-..      +...=.+-++-+...+..+.++..|+-++-.|=. .++.+.
T Consensus       109 ---SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 ---SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             ---eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence               377888999999999999998888876431      1100011222234456778999999999988855 555555


Q ss_pred             HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                      ++.     +.+-.+|.+.++.|.-.|+.+.-.+|-..-    .++ .+-...+.+++..-+.  ..|......|..-|..
T Consensus       180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl----dLI-HknyrklC~ll~dvde--WgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL----DLI-HKNYRKLCRLLPDVDE--WGQVVLINMLTRYARH  247 (968)
T ss_pred             HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH----HHh-hHHHHHHHhhccchhh--hhHHHHHHHHHHHHHh
Confidence            443     445557888888888888888887775321    111 1223334444333322  2333333333332222


Q ss_pred             ----hhH-HHHHhh--------------------cCc---HHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123          404 ----DSA-ARILSS--------------------TTS---FIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC  455 (579)
Q Consensus       404 ----~~~-~~l~~~--------------------~~g---~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~  455 (579)
                          +.. ....+.                    +++   .+...--+|.+.++.|...++.+.+.++-..++...    
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i----  323 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKI----  323 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHH----
Confidence                100 000000                    001   233344557788899999999999999833232222    


Q ss_pred             HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          456 MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      ++.|+++| .+ +.++|+...+.+..++.
T Consensus       324 ~kaLvrLL-rs-~~~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  324 AKALVRLL-RS-NREVQYVVLQNIATISI  350 (968)
T ss_pred             HHHHHHHH-hc-CCcchhhhHHHHHHHHh
Confidence            67888888 33 45677777666666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.71  E-value=0.00017  Score=58.10  Aligned_cols=86  Identities=22%  Similarity=0.266  Sum_probs=71.5

Q ss_pred             HHHHHHHh-ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          164 IRDIFTRL-QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       164 v~~Lv~~L-~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      |+.|+..| ++.++.+|..|+.+|+.+.           ....++.|+.+++ ++++.+|..|+.+|+.+..        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~--------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLK-DEDPMVRRAAARALGRIGD--------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC--------
Confidence            57889989 8889999999999998553           1245999999999 9999999999999998865        


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHH
Q 047123          243 VFEEGGLGPLLRILETG-SMPLKEKAAIGVE  272 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~  272 (579)
                         ..+++.|.+.+.++ +..++..|+.+|+
T Consensus        61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ---PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               45899999999885 5667888888774

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.71  E-value=0.0034  Score=66.80  Aligned_cols=260  Identities=15%  Similarity=0.114  Sum_probs=165.5

Q ss_pred             HHHHHHHhccChhhHHHHHhhCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 047123          183 LESLLQLLKDDDKSAAVVAKEGNVGYLISLL---------DFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL  253 (579)
Q Consensus       183 l~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL---------~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv  253 (579)
                      +.+|+-+.+ ++.+...+....++..|.++-         ....+..+...|+++|+|+-..++..|..+++.|+.+.++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            344544443 455666666666677777765         2245689999999999999997899999999999999999


Q ss_pred             HHHccC-----CHHHHHHHHHHHHHhcC-CCccHHHHHh-cCcHHHHHHHhcC---------C--------CHHHHHHHH
Q 047123          254 RILETG-----SMPLKEKAAIGVEAITT-DPENAWAISA-YGGVSVLIEAFRS---------G--------TALTQSHAV  309 (579)
Q Consensus       254 ~lL~~~-----~~~v~~~aa~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~ll~~---------~--------~~~~~~~a~  309 (579)
                      ..|+..     +.++.-...++|.-++. .++.+..+.+ ++++..+...+..         .        +......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999987     78899999999988884 5566656655 5788877776541         0        224566677


Q ss_pred             HHHHHhhcChhhHHHHHHcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHHhcCChhh-------HH----HHHh
Q 047123          310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLT---------SSSNLAQENAADCIATLAASGEYF-------RL----LIIQ  369 (579)
Q Consensus       310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a~~~L~~La~~~~~~-------r~----~l~~  369 (579)
                      ..++|+..+......-.+...++.++.++.         ........+++.+|.|+-......       ..    ....
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            888999763322211112233444443321         123467888899998884321110       00    0011


Q ss_pred             cCcHHHHHHhhccC----CC--ChHHHHHHHHHHHHcccc-hhHHHHHhh---------------cCcHHHHHHHHHhcC
Q 047123          370 ERGLQRLMHLIQDS----TS--SIVTVENALLAISSLSLS-DSAARILSS---------------TTSFIIQLGEFIKRG  427 (579)
Q Consensus       370 ~g~i~~Lv~ll~~~----~~--~~~~~~~A~~aL~~L~~~-~~~~~l~~~---------------~~g~i~~L~~lL~~~  427 (579)
                      ...+..|+.+|+..    ..  -++.....+.+|.+++.. ...+..+..               +...-.+|+.++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            23466777766532    11  013445556677777765 322222222               334555788888887


Q ss_pred             CHHHHHHHHHHHHHhc
Q 047123          428 NVLLQQVSSSLLGNLS  443 (579)
Q Consensus       428 ~~~v~~~A~~aL~~L~  443 (579)
                      .+.++..++..++.||
T Consensus       321 ~~~~k~~vaellf~Lc  336 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLC  336 (446)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            7888888888888887

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.013  Score=59.55  Aligned_cols=240  Identities=12%  Similarity=0.121  Sum_probs=175.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccC-----h----hhHHHHHhhCcHHHHHHhhcc--CC---CHHHHHHHHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDD-----D----KSAAVVAKEGNVGYLISLLDF--HH---QSSIREQAVLA  228 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-----~----~~~~~i~~~g~v~~Lv~LL~~--~~---~~~~~~~A~~a  228 (579)
                      .|+.++.+|.+.+.++-...+.-|.++...+     .    .-...+++.+.++.|++-+++  ..   .......++..
T Consensus       126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v  205 (536)
T KOG2734|consen  126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV  205 (536)
T ss_pred             cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence            5899999999999999999999999886432     2    234556788899999986641  11   13455567888


Q ss_pred             HHHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc---CC--
Q 047123          229 LSIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR---SG--  300 (579)
Q Consensus       229 L~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~---~~--  300 (579)
                      +.|+..-.++....+++.|.+.-|+.-+...  -...+..|..+|.-+-. +.+++..+...+|+..++.-+.   ..  
T Consensus       206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP  285 (536)
T KOG2734|consen  206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDP  285 (536)
T ss_pred             HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCC
Confidence            8888876788888999889888888755443  23346777888887775 4458889999999999988654   12  


Q ss_pred             ----CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHhcCcHH
Q 047123          301 ----TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE--YFRLLIIQERGLQ  374 (579)
Q Consensus       301 ----~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~--~~r~~l~~~g~i~  374 (579)
                          ..+..++-..+|+.+-..++++..+....++..+.-+++. ....+..++.+|-....+++  .++..+++.+|+.
T Consensus       286 ~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr  364 (536)
T KOG2734|consen  286 ATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR  364 (536)
T ss_pred             CCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence                2367888899999999999999999988888876555654 33567778888888877665  5677888888888


Q ss_pred             HHHHhhc-cCC-------CChHHHHHHHHHHHHcccc
Q 047123          375 RLMHLIQ-DST-------SSIVTVENALLAISSLSLS  403 (579)
Q Consensus       375 ~Lv~ll~-~~~-------~~~~~~~~A~~aL~~L~~~  403 (579)
                      .+..++. ...       ..+..-++.+..||.+-.+
T Consensus       365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            7777554 111       1245667777777766554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.031  Score=60.09  Aligned_cols=279  Identities=19%  Similarity=0.230  Sum_probs=174.5

Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC-CCccHHHHH
Q 047123          209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT-DPENAWAIS  285 (579)
Q Consensus       209 Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~-~~~~~~~i~  285 (579)
                      +.+=|. +.++..+.-|+.+++|++. - +.++.+     -+-+-++|-+++  .-++..|+-+|-.|-. +|+   .+-
T Consensus       116 iknDL~-srn~~fv~LAL~~I~niG~-r-e~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~  184 (938)
T KOG1077|consen  116 IKNDLS-SRNPTFVCLALHCIANIGS-R-EMAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVN  184 (938)
T ss_pred             HHhhhh-cCCcHHHHHHHHHHHhhcc-H-hHHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccC
Confidence            334344 6778888899999999987 2 222222     233337777763  5578888888877764 332   111


Q ss_pred             hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh-hHHHHHHcCCHHHHHHHh-------------cCCCHHHHHHHH
Q 047123          286 AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED-IKAALAEEGAVPVLVQSL-------------TSSSNLAQENAA  350 (579)
Q Consensus       286 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~-~~~~l~~~g~v~~Lv~lL-------------~~~~~~v~~~a~  350 (579)
                      ..+-..+++.+|.+.+-.+...+...+-.++. +++ .+..+..  +|..|....             .-..|-++.+.+
T Consensus       185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  185 PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence            22456788888888877777777777766665 222 2221110  111221111             113567888899


Q ss_pred             HHHHHHhc-CChhhHHHHHhcCcHHHHHHhhccCCC-ChHHHHHHH----HHHHHcccc-hhHHHHHhhcCcHHHHHHHH
Q 047123          351 DCIATLAA-SGEYFRLLIIQERGLQRLMHLIQDSTS-SIVTVENAL----LAISSLSLS-DSAARILSSTTSFIIQLGEF  423 (579)
Q Consensus       351 ~~L~~La~-~~~~~r~~l~~~g~i~~Lv~ll~~~~~-~~~~~~~A~----~aL~~L~~~-~~~~~l~~~~~g~i~~L~~l  423 (579)
                      +.|.+.-. .|+..|..+  ..+++.++...+.... +.-...+|.    .-.-+|+.. +.-..++..   ++..|-.+
T Consensus       263 rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~---~~~~Lg~f  337 (938)
T KOG1077|consen  263 RLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR---AVNQLGQF  337 (938)
T ss_pred             HHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHH
Confidence            99988853 233334333  2234444444432211 111222222    223355555 555556654   88899999


Q ss_pred             HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHH
Q 047123          424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLM  503 (579)
Q Consensus       424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv  503 (579)
                      |.+....+|.-|...++.|+.+....+++....+.++..|+..++..+|..|+..|+.++. .+|.+.++      ..++
T Consensus       338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~IV------~elL  410 (938)
T KOG1077|consen  338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQIV------AELL  410 (938)
T ss_pred             hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHHH------HHHH
Confidence            9999999999999999999977766777777788899999668899999999999999775 45666655      4577


Q ss_pred             hhcCCCchh
Q 047123          504 QMLDPKNEA  512 (579)
Q Consensus       504 ~lL~~~~~~  512 (579)
                      +.|.+.+..
T Consensus       411 qYL~tAd~s  419 (938)
T KOG1077|consen  411 QYLETADYS  419 (938)
T ss_pred             HHHhhcchH
Confidence            777765544

>PF05536 Neurochondrin: Neurochondrin

Probab=97.66  E-value=0.01  Score=64.68  Aligned_cols=233  Identities=15%  Similarity=0.118  Sum_probs=158.6

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHhcCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhh
Q 047123          248 GLGPLLRILETGSMPLKEKAAIGVEAITTDPE----NAWAISAYGGVSVLIEAFRS-------GTALTQSHAVGAIRNIA  316 (579)
Q Consensus       248 ~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~ll~~-------~~~~~~~~a~~aL~nLs  316 (579)
                      .+...+++|+..+.+-+-.+...+.++....+    .+..+.+.=|.+-|-.+|+.       +....+..++.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            36677888888886666666677778875433    24457776667888888887       23467888999999999


Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123          317 AVEDIKAALAEEGAVPVLVQSLTSSSN-LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL  395 (579)
Q Consensus       317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~  395 (579)
                      ..|+....---.+.||.+++.+.+.+. .+...+..+|..++.. +..+..+.+.|+++.|.+.+.++.   ...+.|..
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~  161 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQS---FQMEIALN  161 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHH
Confidence            977764322222479999999977766 9999999999999954 467999999999999999988843   67999999


Q ss_pred             HHHHcccchhHHHHHhhcC---cHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh---HH----HHHHH-HHHHHHhcc
Q 047123          396 AISSLSLSDSAARILSSTT---SFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN---KR----AVASC-MGSLIKLME  464 (579)
Q Consensus       396 aL~~L~~~~~~~~l~~~~~---g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~----~i~~~-v~~Lv~lL~  464 (579)
                      ++.+++........-+...   ..+..+...+...+...+...+..|..+-...+.   +.    .-... ...+..+++
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            9999987622111111100   2455566666666667777777777777622211   11    11111 455556774


Q ss_pred             CCCCHhHHHHHHHHHHHhhc
Q 047123          465 CPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       465 ~~~~~~v~~~a~~aL~~L~~  484 (579)
                      ....+.-|..+.....+|..
T Consensus       242 sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            44456677777777776654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0064  Score=66.05  Aligned_cols=252  Identities=18%  Similarity=0.186  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      +-...++.+...++.|.+.+.-.---+.+.+...|...     .++++.+++=.. ++++.+|-.|++.++.+.. . ..
T Consensus        47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v-~-~i  118 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCE-DPNPLIRALALRTMGCLRV-D-KI  118 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCC-CCCHHHHHHHhhceeeEee-h-HH
Confidence            34467899999999999999888888888887776542     345666666556 7789999998887776655 1 11


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                      .     +-.+.|+.+.+++.++.++..++.++.++-.  .+.......|.+..|-.++.+.++.+..+|+.+|..+...+
T Consensus       119 ~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  119 T-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             H-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            1     2347899999999999999999998888864  44566677899999999999999999999999999886633


Q ss_pred             hh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          320 DI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       320 ~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .+ .........+..++..+..-++--+...+.++.+-...++  ++.   ...++.+...+...++  .+...+...+.
T Consensus       192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea---~~i~~r~~p~Lqh~n~--avvlsavKv~l  264 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REA---EDICERLTPRLQHANS--AVVLSAVKVIL  264 (734)
T ss_pred             CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhH---HHHHHHhhhhhccCCc--ceEeehHHHHH
Confidence            21 0000011122223333332233333333333333222221  111   1233444444555444  45556666666


Q ss_pred             Hcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          399 SLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                      ++... ......+..  ...+.|+.++.... +.+..+.
T Consensus       265 ~~~~~~~~~~~~~~~--K~~~pl~tlls~~~-e~qyvaL  300 (734)
T KOG1061|consen  265 QLVKYLKQVNELLFK--KVAPPLVTLLSSES-EIQYVAL  300 (734)
T ss_pred             HHHHHHHHHHHHHHH--Hhcccceeeecccc-hhhHHHH
Confidence            66555 222222222  34445555555554 5554443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.64  E-value=0.0065  Score=64.65  Aligned_cols=263  Identities=16%  Similarity=0.163  Sum_probs=176.9

Q ss_pred             HHHHHHhhccChhhHHHHHhcCCHHHHHHHH----------ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHH
Q 047123          226 VLALSIIVSANDESRKIVFEEGGLGPLLRIL----------ETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLI  294 (579)
Q Consensus       226 ~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL----------~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv  294 (579)
                      +.+|..+++ ++.+.+.+....++..|+++-          ...+..+...|.++|+|+.. ++..+..+.+.|+.+.++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            556777788 777777777777777777776          22478899999999999985 667888899999999999


Q ss_pred             HHhcCC-----CHHHHHHHHHHHHHhhc-ChhhHHHHHH-cCCHHHHHHHhcC-----------------CCHHHHHHHH
Q 047123          295 EAFRSG-----TALTQSHAVGAIRNIAA-VEDIKAALAE-EGAVPVLVQSLTS-----------------SSNLAQENAA  350 (579)
Q Consensus       295 ~ll~~~-----~~~~~~~a~~aL~nLs~-~~~~~~~l~~-~g~v~~Lv~lL~~-----------------~~~~v~~~a~  350 (579)
                      +.++..     +.++.....+.|+-++. ..+.+..+++ .+++..++..+..                 .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999876     67888888888888876 6667777774 4778777766521                 1335677788


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-------CCCChHHHHHHHHHHHHcccchhHHHHH------------h
Q 047123          351 DCIATLAASGEYFRLLIIQERGLQRLMHLIQD-------STSSIVTVENALLAISSLSLSDSAARIL------------S  411 (579)
Q Consensus       351 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-------~~~~~~~~~~A~~aL~~L~~~~~~~~l~------------~  411 (579)
                      ..+.|+....+.... -.....++.++.++..       ..+......+++.+|.|+-.. ....++            .
T Consensus       161 KllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~-~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  161 KLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE-CLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH-HHhhhhcccCCcccccCCC
Confidence            888998765433211 0123344444444322       222346788888888888432 111110            0


Q ss_pred             hcCcHHHHHHHHHhc----CC----HHHHHHHHHHHHHhc-CChhhHHHHHHH------------------HHHHHHhcc
Q 047123          412 STTSFIIQLGEFIKR----GN----VLLQQVSSSLLGNLS-ISDGNKRAVASC------------------MGSLIKLME  464 (579)
Q Consensus       412 ~~~g~i~~L~~lL~~----~~----~~v~~~A~~aL~~L~-~~~~~~~~i~~~------------------v~~Lv~lL~  464 (579)
                      .....+..|+.+|..    ..    .+.-.--..+|.+++ .+...|+++...                  -..|++++ 
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm-  317 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM-  317 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh-
Confidence            112456677777642    11    123344567788888 567788888775                  56788888 


Q ss_pred             CCCCHhHHHHHHHHHHHhhcCCcchhHHHh
Q 047123          465 CPKPVGLQEAATDAVLSLLTVRSNRKELVR  494 (579)
Q Consensus       465 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~  494 (579)
                      .+....++..+++.|+.|+.  ++..++++
T Consensus       318 t~~~~~~k~~vaellf~Lc~--~d~~~~v~  345 (446)
T PF10165_consen  318 TSPDPQLKDAVAELLFVLCK--EDASRFVK  345 (446)
T ss_pred             CCCCchHHHHHHHHHHHHHh--hhHHHHHH
Confidence            55559999999999999974  34445553

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.64  E-value=0.00024  Score=57.26  Aligned_cols=88  Identities=23%  Similarity=0.304  Sum_probs=69.3

Q ss_pred             HHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHH
Q 047123          373 LQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV  452 (579)
Q Consensus       373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i  452 (579)
                      ++.|++.+..+.+ +.++..++.+|..+...           .+++.|..++++.++.++..|+.+|..+...       
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~-------   61 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIGDP-------   61 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH-------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-------
Confidence            5778888844332 48999999999966433           5789999999999999999999999988411       


Q ss_pred             HHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          453 ASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       453 ~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                       +.++.|.+++.++++..+|..|..+|+
T Consensus        62 -~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 -EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             128899999966667788999999885

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.018  Score=60.36  Aligned_cols=300  Identities=9%  Similarity=0.033  Sum_probs=175.5

Q ss_pred             HHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123          169 TRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDESRKIVFEEG  247 (579)
Q Consensus       169 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~~~~~i~~~g  247 (579)
                      +.|.+..+..-..|...++.++.-.-.+-   .=.|....++.... .+. ..+...++.++++++. ...-...+...+
T Consensus       101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nvg-~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN  175 (858)
T COG5215         101 RALKSPEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCE-SEAPEDLIQMSN  175 (858)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhcc-ccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhh
Confidence            45566666666677777766654221100   01233333444333 333 5677788999999998 544433333333


Q ss_pred             --CHHHHHHHHccC-CHHHHHHHHHHHHH-hcCCCccHHHHHhcC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123          248 --GLGPLLRILETG-SMPLKEKAAIGVEA-ITTDPENAWAISAYG----GVSVLIEAFRSGTALTQSHAVGAIRNIAA-V  318 (579)
Q Consensus       248 --~l~~Lv~lL~~~-~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~  318 (579)
                        .+......++.+ +..+|-.+..+|.+ +-.-   +..+...+    .+...++.-+.++.++|..+.+||..+.. +
T Consensus       176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly  252 (858)
T COG5215         176 VILFAIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY  252 (858)
T ss_pred             HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence              222333344444 56788888888887 3321   11121111    34566677778899999999999988865 2


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH----------------hcCcHHHHHHhhcc
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII----------------QERGLQRLMHLIQD  382 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~----------------~~g~i~~Lv~ll~~  382 (579)
                      -..-....+.-......+.+++.++.+...+++.-..+|...-+.--.+.                -..++|.|+++|..
T Consensus       253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~  332 (858)
T COG5215         253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK  332 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence            22222333433444556667889999999998887666643211111111                12367899999876


Q ss_pred             CCC----Ch-HHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH----HhcCCHHHHHHHHHHHHHhc--CChhhHHH
Q 047123          383 STS----SI-VTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF----IKRGNVLLQQVSSSLLGNLS--ISDGNKRA  451 (579)
Q Consensus       383 ~~~----~~-~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l----L~~~~~~v~~~A~~aL~~L~--~~~~~~~~  451 (579)
                      ..+    ++ .....|..+|.-.+.. ...       ..+..++.+    +++.+-.-++.|+++++.+-  .+...+..
T Consensus       333 q~ed~~~DdWn~smaA~sCLqlfaq~-~gd-------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~  404 (858)
T COG5215         333 QGEDYYGDDWNPSMAASSCLQLFAQL-KGD-------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK  404 (858)
T ss_pred             cCCCccccccchhhhHHHHHHHHHHH-hhh-------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence            332    11 2233333444333322 111       222233333    45677778899999999998  44456666


Q ss_pred             HHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          452 VASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       452 i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      +... +|.+..+. .+...-++..++++++.++..
T Consensus       405 ~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         405 IVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             hHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHH
Confidence            6666 99999988 566677888999999988743

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.0021  Score=68.18  Aligned_cols=296  Identities=16%  Similarity=0.173  Sum_probs=186.3

Q ss_pred             HHHHH-HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh---
Q 047123          162 LFIRD-IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND---  237 (579)
Q Consensus       162 ~~v~~-Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~---  237 (579)
                      ..++. ++.+...+|..+|..|+..|..+.....-      ..-.....++++. +.+.++|..|++.+...+.-.+   
T Consensus       197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL------~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~  269 (823)
T KOG2259|consen  197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL------SKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPL  269 (823)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc------cHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcc
Confidence            34555 88888899999999999999888653221      1223677888998 8889999999888776654221   


Q ss_pred             ---hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123          238 ---ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR  313 (579)
Q Consensus       238 ---~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  313 (579)
                         .....+. ..++..+++.+.+.+..++..|+.+|+.+..- .+.-....+    +.++.-++..- ...+.......
T Consensus       270 e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr-~ahkrpk~l~s  343 (823)
T KOG2259|consen  270 ERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKR-TAHKRPKALYS  343 (823)
T ss_pred             cchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhh-hcccchHHHHh
Confidence               1122222 24578889999999999999999988887642 221111111    11111111000 00011111111


Q ss_pred             Hh---------hc-----ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 047123          314 NI---------AA-----VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL  379 (579)
Q Consensus       314 nL---------s~-----~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~l  379 (579)
                      +-         +.     .++....++..|+--.++.-+.++-.+|+..|+..++.|+...+.+.     ...+..|+.+
T Consensus       344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDM  418 (823)
T KOG2259|consen  344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDM  418 (823)
T ss_pred             cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHH
Confidence            11         00     12224457788888888888888888999999999999998776643     3357888999


Q ss_pred             hccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 047123          380 IQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSL  459 (579)
Q Consensus       380 l~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~L  459 (579)
                      +.+...  .++..|..+|..++..    ..+..  .-++.++..|...+.++++..-..|++.-.++.  +.+.-++..|
T Consensus       419 fNDE~~--~VRL~ai~aL~~Is~~----l~i~e--eql~~il~~L~D~s~dvRe~l~elL~~~~~~d~--~~i~m~v~~l  488 (823)
T KOG2259|consen  419 FNDEIE--VVRLKAIFALTMISVH----LAIRE--EQLRQILESLEDRSVDVREALRELLKNARVSDL--ECIDMCVAHL  488 (823)
T ss_pred             hccHHH--HHHHHHHHHHHHHHHH----heecH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHH
Confidence            888776  8999999999998876    11122  466778888888999999988888777653222  1222224455


Q ss_pred             HHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123          460 IKLMECPKPVGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       460 v~lL~~~~~~~v~~~a~~aL~~L~~~~~  487 (579)
                      ++-|+  +.+.-+.....++..+...+.
T Consensus       489 L~~L~--kyPqDrd~i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  489 LKNLG--KYPQDRDEILRCMGRIGQNHR  514 (823)
T ss_pred             HHHhh--hCCCCcHHHHHHHHHHhccCh
Confidence            55451  223334445556666655443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.024  Score=65.89  Aligned_cols=358  Identities=16%  Similarity=0.166  Sum_probs=193.2

Q ss_pred             chhHHHHHHHHHHHHhcc--CCH-HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHh
Q 047123          156 HKQDLVLFIRDIFTRLQI--GGV-EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSII  232 (579)
Q Consensus       156 ~~~~~~~~v~~Lv~~L~~--~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~L  232 (579)
                      +.+.++.+.+.||.+|-.  =|| .....|+..|.+..-.+.+....-.-......|+.-|. +....+||.++-+|..|
T Consensus       988 a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt-~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen  988 AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT-SKEWRVREASCLALADL 1066 (1702)
T ss_pred             HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence            455666777777777742  122 33457888888877655443322222334455555555 67789999999999988


Q ss_pred             hccC--hhhHHHHHhcCCHHHHHHHHccCCHHHHH---HHHHHHHHhcC---CCcc--HHHHHhcCcHHHHHH--HhcCC
Q 047123          233 VSAN--DESRKIVFEEGGLGPLLRILETGSMPLKE---KAAIGVEAITT---DPEN--AWAISAYGGVSVLIE--AFRSG  300 (579)
Q Consensus       233 a~~~--~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~---~aa~~L~~Ls~---~~~~--~~~i~~~g~i~~Lv~--ll~~~  300 (579)
                      -...  ++..+.+-  ..-..+++.+++-...+|+   .++.+|.+|+.   +..+  +..=.-..++|.|++  .+ +.
T Consensus      1067 l~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK 1143 (1702)
T ss_pred             HcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc
Confidence            7632  22333332  3456677777776555665   55666777662   2211  111111234455553  22 55


Q ss_pred             CHHHHHHHHHHHHHhhcChhh--HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 047123          301 TALTQSHAVGAIRNIAAVEDI--KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH  378 (579)
Q Consensus       301 ~~~~~~~a~~aL~nLs~~~~~--~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~  378 (579)
                      -.+++..++.++..|+.+...  +..+.  ..||.|+..++.-.+.+..+...-+.|..            ...++.+-.
T Consensus      1144 v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~e------------~ealDt~R~ 1209 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINIE------------TEALDTLRA 1209 (1702)
T ss_pred             hHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhhH------------HHHHHHHHH
Confidence            568999999999998775432  22222  35677777666555544333221111111            111222211


Q ss_pred             hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 047123          379 LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS--ISDGNKRAVASC  455 (579)
Q Consensus       379 ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~--~~~~~~~~i~~~  455 (579)
                      -...++   .+.+..-.+|.++     -..+++   ..++.+.++++++ ....+..++..+.-|+  ...+...+-+.-
T Consensus      1210 s~akss---pmmeTi~~ci~~i-----D~~vLe---elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1210 SAAKSS---PMMETINKCINYI-----DISVLE---ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred             hhhcCC---cHHHHHHHHHHhh-----hHHHHH---HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence            111111   1222211122211     112333   3788899999765 4466677777777777  334444444444


Q ss_pred             HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc--hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhH
Q 047123          456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN--RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC  533 (579)
Q Consensus       456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~  533 (579)
                      +..++..+ ++.+..++...+.|.+.|+..+..  .+..+.     ..+-.++.+.++.  +..++..+.+++.+..   
T Consensus      1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~--~siscatis~Ian~s~--- 1347 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESL--KSISCATISNIANYSQ--- 1347 (1702)
T ss_pred             HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCc--cchhHHHHHHHHHhhH---
Confidence            77777888 668899999999999999876432  222321     2233344444333  3555555555554432   


Q ss_pred             HHHHHH-cCchHHHHhhhccCC
Q 047123          534 RKRLVA-AGAYQHLQKLAETEV  554 (579)
Q Consensus       534 r~~i~~-~g~~~~L~~L~~~~~  554 (579)
                       ..+-+ +.++-+|+-+...++
T Consensus      1348 -e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1348 -EMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred             -HHHHhhHHHHHHHHHHHHhHH
Confidence             22221 334555666655554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.59  E-value=0.0021  Score=62.04  Aligned_cols=182  Identities=19%  Similarity=0.175  Sum_probs=115.5

Q ss_pred             hccCCHHHHHHHHHHHHHHhccC--hhhHHHHHh--hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          171 LQIGGVEFKKKALESLLQLLKDD--DKSAAVVAK--EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       171 L~~~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~--~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      -.+.+++.|.+|+..|..++..+  ......+..  ...+..+...+. +....+...|+.++..++. .-...-.-.-.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~-~l~~~~~~~~~   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLAR-QLGSHFEPYAD   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHH-HHGGGGHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHH-HHhHhHHHHHH
Confidence            35678999999999999998877  223333221  255667777777 6667888899999999987 32222111134


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh-----h
Q 047123          247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-----I  321 (579)
Q Consensus       247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~-----~  321 (579)
                      ..+|+|++.+.++...+++.|..+|..+..+-.....+    ..+.+...+.+.++.++..++..+..+...-.     .
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            57899999999999999999999999998653311111    14667777888999999999999988755222     1


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      .....-...++.+...+.+.++++|..|-.++..+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1111113467888888999999999999999998854

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.59  E-value=0.012  Score=62.02  Aligned_cols=296  Identities=16%  Similarity=0.137  Sum_probs=172.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh--hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD--KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ..|...+.+|++..+++|..|+.....++.--.  ..-+.+...|.  .|.+-|. ..++++.-..+.++..+.. .-..
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~s-v~~~  679 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYS-VHRF  679 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhh-hhcc
Confidence            368888999999999999999888877753111  11122233332  3556676 7778888877777777765 2222


Q ss_pred             HH-HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Cc---cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          240 RK-IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PE---NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       240 ~~-~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                      +. +---.|.+|.|..+|++....++.+....+..++.+ ++   .++.   ..+.-.|+..|.+-+.+++.+|...+..
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW---MRIcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW---MRICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH---HHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            21 111258899999999999999999999999999853 33   2333   2456678888899999999999988887


Q ss_pred             hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccC-CCChHHHHH
Q 047123          315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDS-TSSIVTVEN  392 (579)
Q Consensus       315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~-~~~~~~~~~  392 (579)
                      ++..      +.-+.++..|++-|+.++-  +...+.+++-         ..+.+ .|-...|-.++.+. .+...+|.-
T Consensus       757 Is~a------iGPqdvL~~LlnnLkvqeR--q~RvctsvaI---------~iVae~cgpfsVlP~lm~dY~TPe~nVQnG  819 (975)
T COG5181         757 ISRA------IGPQDVLDILLNNLKVQER--QQRVCTSVAI---------SIVAEYCGPFSVLPTLMSDYETPEANVQNG  819 (975)
T ss_pred             HHhh------cCHHHHHHHHHhcchHHHH--Hhhhhhhhhh---------hhhHhhcCchhhHHHHHhcccCchhHHHHh
Confidence            7652      1122234444444433322  2222222211         01111 23222333333332 232355655


Q ss_pred             HHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhhH--HHHHHHHHHHHHhccCCCC
Q 047123          393 ALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-DGNK--RAVASCMGSLIKLMECPKP  468 (579)
Q Consensus       393 A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~~~~--~~i~~~v~~Lv~lL~~~~~  468 (579)
                      .+.++..+-.+ .....=...  ...+.|-..|.+.++.-++.|...+.+|+-+ +..-  .++..-+..|+.-+ -..+
T Consensus       820 vLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNI-le~s  896 (975)
T COG5181         820 VLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNI-LEPS  896 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhc-cCCC
Confidence            55555544433 222221122  3566777788888999999999999999933 2211  12111133443322 2345


Q ss_pred             HhHHHHHHHHHHHhhc
Q 047123          469 VGLQEAATDAVLSLLT  484 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~  484 (579)
                      +.++..--+.+-.++.
T Consensus       897 Phvi~~~~Eg~e~~~~  912 (975)
T COG5181         897 PHVIQSFDEGMESFAT  912 (975)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            6666666666665553

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.00041  Score=71.67  Aligned_cols=186  Identities=10%  Similarity=0.068  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123          305 QSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS  383 (579)
Q Consensus       305 ~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~  383 (579)
                      ...++.+|..++.. .-.|.-+.+..+++.|+++|+.++..+.--+...++|+.....+.+..+.+.|.+..|+.++.+.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            34555566666663 34567778888999999999987777777788888888876667899999999999999999877


Q ss_pred             CCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhhHHHHHHH-
Q 047123          384 TSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS----DGNKRAVASC-  455 (579)
Q Consensus       384 ~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~----~~~~~~i~~~-  455 (579)
                      ++  .++.+..+.++.+..+ +  ..-..+..  -++..++.+.+..+-.+|......++|++.+    ++.+..+... 
T Consensus       486 Dd--aLqans~wvlrHlmyncq~~ekf~~Lak--ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~  561 (743)
T COG5369         486 DD--ALQANSEWVLRHLMYNCQKNEKFKFLAK--IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT  561 (743)
T ss_pred             hh--hhhhcchhhhhhhhhcCcchhhhhhHHh--cCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence            65  8999999999999987 2  22345555  6788999999999999999999999999842    2233322222 


Q ss_pred             -----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhh
Q 047123          456 -----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRD  495 (579)
Q Consensus       456 -----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~  495 (579)
                           ...|++.+ ..+++-..+..+..|.+++.++.+.+.++.+
T Consensus       562 p~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~  605 (743)
T COG5369         562 PRRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS  605 (743)
T ss_pred             hHHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence                 66777778 5555666666788999998888887766643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.0028  Score=70.43  Aligned_cols=178  Identities=18%  Similarity=0.132  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhhcChhh----HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 047123          305 QSHAVGAIRNIAAVEDI----KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI  380 (579)
Q Consensus       305 ~~~a~~aL~nLs~~~~~----~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll  380 (579)
                      |.+-+++|.-|+..-+.    ...-..-|+.|-++++|++...+++...+.+=+.+-.-|+.++..++++++-.-.++.+
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            55666666666553221    22223568999999999999888888877777777666778899999988888888888


Q ss_pred             cc-CCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc-CChhhHHHHHHH
Q 047123          381 QD-STSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS-ISDGNKRAVASC  455 (579)
Q Consensus       381 ~~-~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~-~~~~~~~~i~~~  455 (579)
                      .+ ..-+++-+.+|+.+|..++.+  -.....++.  +.+..-+..|+++ .+-.++..+-.|..|= ..++.|-.=.+.
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~--~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~  641 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG--NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD  641 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc--cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc
Confidence            77 333358899999999999988  445667777  8888888888886 6888999999999987 444444322222


Q ss_pred             --HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                        .+.|+.+| .+..++||.+|..||+.+...
T Consensus       642 ~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  642 NAHEKLILLL-SDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             cHHHHHHHHh-cCccHHHHHHHHHHHHHHhcc
Confidence              89999999 677899999999999999875

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.49  E-value=0.023  Score=55.50  Aligned_cols=260  Identities=18%  Similarity=0.079  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-CHHHHHHHH
Q 047123          178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEG-GLGPLLRIL  256 (579)
Q Consensus       178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g-~l~~Lv~lL  256 (579)
                      .+..-+..+....++++-++..-.- =+...|-++++ .-++-.+.-|++++.++.. .++.|..+-.++ .-..++.++
T Consensus       124 ~k~~f~~vf~~~~~~~~~~v~~~~~-LfleyLgkl~Q-~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l  200 (432)
T COG5231         124 HKKEFLSVFKQMLKDNTSYVESNYL-LFLEYLGKLSQ-LIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEIL  200 (432)
T ss_pred             HHHHHHHHHHHHccCchHHHhhhHH-HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHH
Confidence            3444455555554444433221110 01223333444 4456678899999999999 999998877665 445678888


Q ss_pred             cc--CCHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-Ch-hhHHHHHHcCC
Q 047123          257 ET--GSMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA-VE-DIKAALAEEGA  330 (579)
Q Consensus       257 ~~--~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~-~~-~~~~~l~~~g~  330 (579)
                      ..  |...+|.....+++-|+.++++.+.+-. ...+.-|+.+.+.. ...+...+++.+.|++. .+ ..-..+.-.|-
T Consensus       201 ~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~  280 (432)
T COG5231         201 QNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND  280 (432)
T ss_pred             HhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc
Confidence            76  4678999999999999999998866655 45677788887764 34677888888999887 22 33334444554


Q ss_pred             HHHHHHHhcC---CCHHHHHHHHHH-------HHHHhcCCh---------------h--------hHHHHHh--cCcHHH
Q 047123          331 VPVLVQSLTS---SSNLAQENAADC-------IATLAASGE---------------Y--------FRLLIIQ--ERGLQR  375 (579)
Q Consensus       331 v~~Lv~lL~~---~~~~v~~~a~~~-------L~~La~~~~---------------~--------~r~~l~~--~g~i~~  375 (579)
                      +...++.|..   .+++++...-..       =..++..|.               .        .-..+.+  ...+..
T Consensus       281 ~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~  360 (432)
T COG5231         281 ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKV  360 (432)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHH
Confidence            5555666632   233333222111       111121110               0        1122222  235678


Q ss_pred             HHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          376 LMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       376 Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      |.++++...++ .....|+.-|..+...  +....+...  |+-..+.+++++.+++|+.+|..++..+.
T Consensus       361 L~~~lq~n~~n-t~i~vAc~Di~~~Vr~~PE~~~vl~Ky--g~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         361 LKKYLQSNNPN-TWICVACSDIFQLVRASPEINAVLSKY--GVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhcCCCC-ceEeeeHhhHHHHHHhCchHHHHHHHh--hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            88888887762 3455677777777766  445556666  99999999999999999999999987654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.024  Score=60.53  Aligned_cols=242  Identities=13%  Similarity=0.091  Sum_probs=156.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C--h----hhHHH
Q 047123          252 LLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V--E----DIKAA  324 (579)
Q Consensus       252 Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~--~----~~~~~  324 (579)
                      ++.+..+.+..|+..|+.+|-.|+..-.....     .....++++++.+..++..|+..++-.+. .  +    .....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k  277 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK  277 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence            77788888999999999999888863332222     23677889999999999999877755443 1  1    11222


Q ss_pred             HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc--cc
Q 047123          325 LAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL--SL  402 (579)
Q Consensus       325 l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L--~~  402 (579)
                      +.+ .++..+...+.+.+-.++..|..+|+.+....+.+-.+..+......+-+.=.       ..+.......+-  ++
T Consensus       278 l~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~-------ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  278 LKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT-------AHKRPKALYSSGEWSS  349 (823)
T ss_pred             hHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh-------cccchHHHHhcCCccc
Confidence            222 35667778888888889999999888876544333222222222221111000       000000111111  00


Q ss_pred             -------------chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCC
Q 047123          403 -------------SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPK  467 (579)
Q Consensus       403 -------------~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~  467 (579)
                                   .+....++.+  |+-..++.-|++.-.+|+..|...++.|+ .+|..    ... ++.|+.++ +++
T Consensus       350 Gk~~~advpsee~d~~~~siI~s--GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMf-NDE  422 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPS--GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMF-NDE  422 (823)
T ss_pred             CccccccCchhhccccccccccc--cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHh-ccH
Confidence                         1234457777  88888888888888999999999999999 55553    233 88999999 888


Q ss_pred             CHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHH
Q 047123          468 PVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVM  520 (579)
Q Consensus       468 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~  520 (579)
                      ..+||..|..+|..++..-.     + .+.-++.++..|++.+.+ +++..--
T Consensus       423 ~~~VRL~ai~aL~~Is~~l~-----i-~eeql~~il~~L~D~s~d-vRe~l~e  468 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVHLA-----I-REEQLRQILESLEDRSVD-VREALRE  468 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHhe-----e-cHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence            89999999999999987522     2 234456777777777766 5555444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.39  E-value=0.0048  Score=64.98  Aligned_cols=259  Identities=14%  Similarity=0.069  Sum_probs=158.1

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh--HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDES--RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW  282 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~--~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~  282 (579)
                      .|...+.+|+ ++.+.+|+.|+...+.|+.--..|  -+.+...|.  .|.+-|....+++.-....+++.+......+.
T Consensus       605 ivStiL~~L~-~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLR-SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            4556677888 999999999999988887611112  122223332  35666677788888887777777764322110


Q ss_pred             -HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hh---hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          283 -AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-ED---IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       283 -~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~---~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                       .---.|++|.|..+|++....++.+.+..+..++.+ ++   .|+-|.   +--.|+..|.+.+.+++..|..+++.++
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence             001157889999999999999999999999888873 32   233322   2234677788889999999999988876


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123          358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS  437 (579)
Q Consensus       358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~  437 (579)
                      ..       +.-..++..|+.-|+....  +.+....-+|.-.+..  +.   -.  .+++.|+.=-...+..||.-.++
T Consensus       759 ~a-------iGPqdvL~~LlnnLkvqeR--q~RvctsvaI~iVae~--cg---pf--sVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         759 RA-------IGPQDVLDILLNNLKVQER--QQRVCTSVAISIVAEY--CG---PF--SVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             hh-------cCHHHHHHHHHhcchHHHH--HhhhhhhhhhhhhHhh--cC---ch--hhHHHHHhcccCchhHHHHhHHH
Confidence            42       1112234445444444322  1121111122111111  00   00  34555555556677788988888


Q ss_pred             HHHHhc--CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          438 LLGNLS--ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       438 aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +++.+-  .....++++-.-.|.|-..| .+.++.-|.-|...+.+|+...
T Consensus       823 am~fmFeyig~~s~dYvy~itPlleDAl-tDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         823 AMCFMFEYIGQASLDYVYSITPLLEDAL-TDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHHHHHHhcCC
Confidence            877765  22222233322255555567 6677888999999999998653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.034  Score=60.20  Aligned_cols=322  Identities=12%  Similarity=0.097  Sum_probs=187.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc--ChhhHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA--NDESRKI  242 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~--~~~~~~~  242 (579)
                      .++..-|..|+.+.+.+|+..+..+....+..-..      +-.++++.-.+.+.+++.--...+..+-..  +....+.
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~L------lm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~E   96 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSL------LMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHE   96 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHH------HHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHH
Confidence            35677889999999999998887776555433221      222222211144555554433333333221  1122222


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                      |+  =++..+-+=|.+++..+|....+.|++|-.- |.-     ...+|.+...+.+.+.-++.+|.-|+..+-.+-   
T Consensus        97 MI--Lvcna~RkDLQHPNEyiRG~TLRFLckLkE~-ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~---  165 (948)
T KOG1058|consen   97 MI--LVCNAYRKDLQHPNEYIRGSTLRFLCKLKEP-ELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---  165 (948)
T ss_pred             HH--HHHHHHhhhccCchHhhcchhhhhhhhcCcH-HHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---
Confidence            22  1345555666778999999988888887531 211     234577777888899999999999988775431   


Q ss_pred             HHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-CCCChHHHHHHHHHHHHc
Q 047123          323 AALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-STSSIVTVENALLAISSL  400 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-~~~~~~~~~~A~~aL~~L  400 (579)
                      +.++- .+-+.+-..| ...++..+.+|.-.|...   +++        .++.-|...+.. ++.++.++...+..|+..
T Consensus       166 ~~L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv  233 (948)
T KOG1058|consen  166 EHLIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKV  233 (948)
T ss_pred             hhhcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence            01110 1222222333 455677777776555433   222        123333332221 222236777777777777


Q ss_pred             ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123          401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV  479 (579)
Q Consensus       401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL  479 (579)
                      |..   ..-...  .++.++..+|.+.++.+..+|++.|.+|+..|..-+.-... ++.+++.-    +..++.-..--|
T Consensus       234 ~~~---~p~~~~--~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes----dnnvklIvldrl  304 (948)
T KOG1058|consen  234 CLA---NPAEKA--RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES----DNNVKLIVLDRL  304 (948)
T ss_pred             Hhc---CHHHhh--HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc----CcchhhhhHHHH
Confidence            664   111123  68999999999999999999999999999887765554444 44444433    233333233333


Q ss_pred             HHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ..+.   ...+.++  .+-+.-+++.|.+++-+ +++.++.+...|..+..
T Consensus       305 ~~l~---~~~~~il--~~l~mDvLrvLss~dld-vr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  305 SELK---ALHEKIL--QGLIMDVLRVLSSPDLD-VRSKTLDIALDLVSSRN  349 (948)
T ss_pred             HHHh---hhhHHHH--HHHHHHHHHHcCccccc-HHHHHHHHHHhhhhhcc
Confidence            3333   2233344  34556677888888777 78888888888877764

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.082  Score=50.60  Aligned_cols=242  Identities=16%  Similarity=0.186  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH
Q 047123          176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRI  255 (579)
Q Consensus       176 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~l  255 (579)
                      ...|..|+-.|+++..  +..         +..+-+... +++.......+.+|+....           +..++.|+..
T Consensus        19 l~~r~rALf~Lr~l~~--~~~---------i~~i~ka~~-d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~v   75 (289)
T KOG0567|consen   19 LQNRFRALFNLRNLLG--PAA---------IKAITKAFI-DDSALLKHELAYVLGQMQD-----------EDAVPVLVEV   75 (289)
T ss_pred             HHHHHHHHHhhhccCC--hHH---------HHHHHHhcc-cchhhhccchhhhhhhhcc-----------chhhHHHHHH
Confidence            3445566666666542  222         333333222 2233333344555555555           5567777777


Q ss_pred             HccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHH------HH--
Q 047123          256 LETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKA------AL--  325 (579)
Q Consensus       256 L~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~------~l--  325 (579)
                      |...  .+-+|..|+.+|..+. .+         ..++.|-+..++....+++.+-.++..+-.......      ..  
T Consensus        76 l~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~Sv  145 (289)
T KOG0567|consen   76 LLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISV  145 (289)
T ss_pred             hcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccC
Confidence            7654  3556667777777665 22         233445555544444555555555554422110000      00  


Q ss_pred             -----HHcCCHHHHHHHhcCCC-HH-HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          326 -----AEEGAVPVLVQSLTSSS-NL-AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       326 -----~~~g~v~~Lv~lL~~~~-~~-v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                           ...+-|..+-..+.+.+ +. -+..+...|.|+-.           +..+..+..-+..++  .-.|..++.++.
T Consensus       146 dPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~S--alfrhEvAfVfG  212 (289)
T KOG0567|consen  146 DPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDS--ALFRHEVAFVFG  212 (289)
T ss_pred             CCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccch--HHHHHHHHHHHh
Confidence                 01112233322222221 21 23334444444322           123455555555553  367778888888


Q ss_pred             HcccchhHHHHHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHH
Q 047123          399 SLSLSDSAARILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAAT  476 (579)
Q Consensus       399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~  476 (579)
                      .|-..           -.++.|.+.|.  ..++-||..|+.||+.++..+-        ++.|.+.+ ++...-+++.|.
T Consensus       213 Ql~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~--------~~vL~e~~-~D~~~vv~esc~  272 (289)
T KOG0567|consen  213 QLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC--------VEVLKEYL-GDEERVVRESCE  272 (289)
T ss_pred             hccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH--------HHHHHHHc-CCcHHHHHHHHH
Confidence            87655           56777777774  4578999999999999985544        78888888 666778888888


Q ss_pred             HHHHHhh
Q 047123          477 DAVLSLL  483 (579)
Q Consensus       477 ~aL~~L~  483 (579)
                      -+|-.+-
T Consensus       273 valdm~e  279 (289)
T KOG0567|consen  273 VALDMLE  279 (289)
T ss_pred             HHHHHHH
Confidence            8776654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.19  E-value=0.43  Score=50.60  Aligned_cols=345  Identities=14%  Similarity=0.087  Sum_probs=182.3

Q ss_pred             HHHHHHhccCCH---HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh---
Q 047123          165 RDIFTRLQIGGV---EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE---  238 (579)
Q Consensus       165 ~~Lv~~L~~~~~---~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~---  238 (579)
                      +.++..|...+.   ......+..|..+|...+-.... .. ..+..|-...+...+.+.-...+.+|..+.....+   
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~-~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETL-SI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH-HH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            345566655443   55677888898888654322222 11 33333333333122455555666667666542222   


Q ss_pred             --hHHHHHhcCCHHHHHHHHccC-----C--HHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhc---------
Q 047123          239 --SRKIVFEEGGLGPLLRILETG-----S--MPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFR---------  298 (579)
Q Consensus       239 --~~~~i~~~g~l~~Lv~lL~~~-----~--~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~---------  298 (579)
                        ......+...++.+++..-..     +  ..+-..+..++..+..  +.+.+..+     +..+..+.-         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCC
Confidence              234445555788887777442     1  3455555555555542  33334333     233333222         


Q ss_pred             -CC------CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 047123          299 -SG------TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQE  370 (579)
Q Consensus       299 -~~------~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~  370 (579)
                       ..      ......-...++..+-..-... ..  ...+..++.+. ...++..+..++.+++.+...-+...   .-.
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLD  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHH
Confidence             01      1112222223333332211111 11  11556666664 44567888888888888876421100   001


Q ss_pred             CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhh
Q 047123          371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-DGN  448 (579)
Q Consensus       371 g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~~~  448 (579)
                      ..+..+...+.+... ...+..+...+.-++.. -.+..-...  ..+..|+.++.+  +++...++.++.-|..+ ++.
T Consensus       229 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~~~~~~--~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~  303 (415)
T PF12460_consen  229 EFLDSLLQSISSSED-SELRPQALEILIWITKALVMRGHPLAT--ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV  303 (415)
T ss_pred             HHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcCCchHH--HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh
Confidence            223333333311111 23444555444433332 000000111  356678888876  66778888888888743 332


Q ss_pred             -------------HHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhh-cccHHHHHhhcCCCchhh
Q 047123          449 -------------KRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRD-EKSVMRLMQMLDPKNEAL  513 (579)
Q Consensus       449 -------------~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~~  513 (579)
                                   ++.+... +|.|++-. ...+.+.+.....||.++...-+... +..+ ...++.|++-|+.++.+ 
T Consensus       304 l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL~~~~~~-  380 (415)
T PF12460_consen  304 LNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSNYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSLSLPDAD-  380 (415)
T ss_pred             cCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHhCCCCHH-
Confidence                         3344444 89999988 44455589999999999998665332 2222 34678889999888776 


Q ss_pred             hhHHHHHHHHHHhCCCC
Q 047123          514 NKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       514 ~k~~av~~L~~L~~~~~  530 (579)
                      .+..++.+|..+....+
T Consensus       381 v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  381 VLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHcCH
Confidence            78888888888876654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.16  E-value=0.0047  Score=59.68  Aligned_cols=182  Identities=14%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             CCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHH
Q 047123          216 HHQSSIREQAVLALSIIVSAN--DESRKIVFEE--GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVS  291 (579)
Q Consensus       216 ~~~~~~~~~A~~aL~~La~~~--~~~~~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~  291 (579)
                      +.+-..|..|+.-|..+...+  ......++..  ..+..++..+.+....+...|+.++..++..-.....-.-...++
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~   97 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP   97 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            567889999999999887744  2333333322  566777777777778889999999999984322222222345789


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--
Q 047123          292 VLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ--  369 (579)
Q Consensus       292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--  369 (579)
                      .|++.+.++...++..|..+|..+..+-.....+    .++.+...+.+.++.++..++.++..+....+.....+..  
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~  173 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA  173 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence            9999999999999999999999998754411111    1455666778899999999999999987644310111111  


Q ss_pred             --cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          370 --ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       370 --~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                        ...++.+...+.+.++  ++|+.|..+++.+...
T Consensus       174 ~~~~l~~~l~~~l~D~~~--~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  174 FLKQLVKALVKLLSDADP--EVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHTSS-H--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHH
Confidence              3456677777777776  9999999999998765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.15  E-value=0.059  Score=60.25  Aligned_cols=344  Identities=14%  Similarity=0.103  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          158 QDLVLFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      +.+...++.+...+-. .++.+|..+...+..+++.-+...   ...+.++.+.++.. +....+|+.|...+.++.. .
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~---~~s~v~~~~~~L~~-DdqdsVr~~a~~~~~~l~~-l  306 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI---VKSEVLPTLIQLLR-DDQDSVREAAVESLVSLLD-L  306 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH---HHhhccHHHhhhhh-cchhhHHHHHHHHHHHHHH-h
Confidence            5677777887777754 566777777777887776444332   23567888888888 8888888888777776664 1


Q ss_pred             hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc---------------------------------------C-
Q 047123          237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT---------------------------------------T-  276 (579)
Q Consensus       237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls---------------------------------------~-  276 (579)
                      -..... ...-..+.+++..++++..++...+.....|.                                       . 
T Consensus       307 ~~~~~d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~  385 (759)
T KOG0211|consen  307 LDDDDD-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY  385 (759)
T ss_pred             cCCchh-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence            111101 11223555555555555554444443333332                                       1 


Q ss_pred             -CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          277 -DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT  355 (579)
Q Consensus       277 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~  355 (579)
                       +.++...+.....++.+-.++.+.+..++...+..+.+++-.-. +..- -.-..|.++..+++..+.++.+....+..
T Consensus       386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~  463 (759)
T KOG0211|consen  386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSL  463 (759)
T ss_pred             cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence             11222222233333444444444444444444333333321000 0000 01134555556677778888888876655


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHH
Q 047123          356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVS  435 (579)
Q Consensus       356 La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A  435 (579)
                      +-..++..-.....+-.++.+..+-.....  .++......+..++.... ..++..  -..+.+...+.+....++..|
T Consensus       464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~w--Rvr~ail~~ip~la~q~~-~~~~~~--~~~~l~~~~l~d~v~~Ir~~a  538 (759)
T KOG0211|consen  464 LEEVNDVIGISTVSNSLLPAIVELAEDLLW--RVRLAILEYIPQLALQLG-VEFFDE--KLAELLRTWLPDHVYSIREAA  538 (759)
T ss_pred             HHhccCcccchhhhhhhhhhhhhhccchhH--HHHHHHHHHHHHHHHhhh-hHHhhH--HHHHHHHhhhhhhHHHHHHHH
Confidence            543333333334444555666665555443  666666677776666522 222222  234444455566667788888


Q ss_pred             HHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhh
Q 047123          436 SSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALN  514 (579)
Q Consensus       436 ~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~  514 (579)
                      +.-+..++..-. .+.-... ++.++.+. ..++.-.|...+.++..++....  +.+. ...-++.+.++..+..++ +
T Consensus       539 a~~l~~l~~~~G-~~w~~~~~i~k~L~~~-~q~~y~~R~t~l~si~~la~v~g--~ei~-~~~Llp~~~~l~~D~van-V  612 (759)
T KOG0211|consen  539 ARNLPALVETFG-SEWARLEEIPKLLAMD-LQDNYLVRMTTLFSIHELAEVLG--QEIT-CEDLLPVFLDLVKDPVAN-V  612 (759)
T ss_pred             HHHhHHHHHHhC-cchhHHHhhHHHHHHh-cCcccchhhHHHHHHHHHHHHhc--cHHH-HHHHhHHHHHhccCCchh-h
Confidence            777777761111 1112222 66666666 33345556555555554442211  1111 133445555555555544 3


Q ss_pred             hHHHHH
Q 047123          515 KKFPVM  520 (579)
Q Consensus       515 k~~av~  520 (579)
                      +-.++-
T Consensus       613 R~nvak  618 (759)
T KOG0211|consen  613 RINVAK  618 (759)
T ss_pred             hhhHHH
Confidence            433333

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.058  Score=51.59  Aligned_cols=216  Identities=18%  Similarity=0.207  Sum_probs=140.9

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 047123          174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL  252 (579)
Q Consensus       174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~L  252 (579)
                      ++...+...+.+|++..           ....|+.|+..|. .+..+-+|..|+.+|+.+..           ...++.+
T Consensus        48 ~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l  105 (289)
T KOG0567|consen   48 DSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEIL  105 (289)
T ss_pred             chhhhccchhhhhhhhc-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHH
Confidence            33344445555555543           3557999998765 24458899999999999986           4566777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhcCCCccHH-----HH--------HhcCcHHHHHHHhcCCCH-H-HHHHHHHHHHHhhc
Q 047123          253 LRILETGSMPLKEKAAIGVEAITTDPENAW-----AI--------SAYGGVSVLIEAFRSGTA-L-TQSHAVGAIRNIAA  317 (579)
Q Consensus       253 v~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~-----~i--------~~~g~i~~Lv~ll~~~~~-~-~~~~a~~aL~nLs~  317 (579)
                      -++.+++...+++.+..++..+-+......     .+        ...+-+..|-..+.+.+. . -+..+.-.|+|+-.
T Consensus       106 ~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~  185 (289)
T KOG0567|consen  106 TKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT  185 (289)
T ss_pred             HHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc
Confidence            777777778888887777777753111000     00        111223444444433332 1 13333344444322


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      .          ..|..++.-+..++.-.+..+..+++.|-+           .-.++.|.+.|......+-+|-.|+.||
T Consensus       186 E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeAL  244 (289)
T KOG0567|consen  186 E----------EAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEAL  244 (289)
T ss_pred             H----------HHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHH
Confidence            1          245666677777788889999999888754           3358888888887776668999999999


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      ..++..           ..+..|.+++...++-+++.+.-+|--+-
T Consensus       245 GaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  245 GAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            999876           56777777888888888887777765543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.10  E-value=0.12  Score=54.63  Aligned_cols=257  Identities=14%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 047123          207 GYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA  286 (579)
Q Consensus       207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~  286 (579)
                      |.|-.-|+ +.-.-++..++++++.++..+  ....++ ...+..|-.+|++.....|-.|.++|..|+...+.+...+.
T Consensus       267 pfL~~wls-~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         267 PFLNSWLS-DKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHhc-CcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            33444444 444778889999999888722  122222 23467777778888888999999999999942221111111


Q ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH--
Q 047123          287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR--  364 (579)
Q Consensus       287 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r--  364 (579)
                          +.+-.++.+.+..+-..|+..|.. ...+++-..++.  .|+.   ++++-+++.+.-++.++..|+...+.-+  
T Consensus       343 ----~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~s---fvhD~SD~FKiI~ida~rsLsl~Fp~k~~s  412 (898)
T COG5240         343 ----KEVESLISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPS---FVHDMSDGFKIIAIDALRSLSLLFPSKKLS  412 (898)
T ss_pred             ----hhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHH---HHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence                111122223332222222222221 122233222221  1222   2222222233333333333332222211  


Q ss_pred             ------HHHHhcCcH-------HHHHHhhccCCCChHHHHHHHHHHHHcccc----hhHHHHHh---h------cC-cHH
Q 047123          365 ------LLIIQERGL-------QRLMHLIQDSTSSIVTVENALLAISSLSLS----DSAARILS---S------TT-SFI  417 (579)
Q Consensus       365 ------~~l~~~g~i-------~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~----~~~~~l~~---~------~~-g~i  417 (579)
                            ..+.++|+.       +.+..+++...   +.++.|+..|+.....    ...-.++.   .      .+ .++
T Consensus       413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p---~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv  489 (898)
T COG5240         413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP---DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV  489 (898)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence                  122234432       23333333221   3444443333332221    11111110   0      01 234


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          418 IQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       418 ~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      ..+.+-+--.+.-++..|..+|...+-  ++. ..+.+   ...|-+.+ ++++.++|+.|.-+|.++-.
T Consensus       490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv---~~~lkRcl-nD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSV---ENALKRCL-NDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH---HHHHHHHh-hcccHHHHHHHHHHHHhhhh
Confidence            455555545667788889999988772  221 11111   33455677 78899999999999999863

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.07  E-value=0.0013  Score=44.36  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          278 PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       278 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      ++++..+.+.|+++.|+.++.++++.++..++++|+|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4578889999999999999999999999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.06  E-value=0.043  Score=62.47  Aligned_cols=299  Identities=15%  Similarity=0.118  Sum_probs=182.2

Q ss_pred             HHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc---cChhh
Q 047123          164 IRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS---ANDES  239 (579)
Q Consensus       164 v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~---~~~~~  239 (579)
                      |.-+...++. ...+.+..|+.-|..++..-+..   ..-.-++|.++.++. ++..++|..|+.+|..+-.   +.+..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4444444432 34568899999999887522211   122456999999999 9999999999988876543   13333


Q ss_pred             HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          240 RKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      -..++-+=.+|.|-.++.+ ....++..-|..|..|+..   ...|.+.+--.....++++.+.+       ...+.. .
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~nse-------t~~~~~-~  568 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNSE-------TAPEQN-Y  568 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCcccc-------cccccc-c
Confidence            3445555678888888887 4566777778888888732   12222221111122223332221       000000 0


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      +....++. +++=+....++.+..+-|+..-+..|.-||.....   .-.++=.++.|+.+|.+.+.  .+|..-..-|.
T Consensus       569 ~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw--~LR~aFfdsI~  642 (1431)
T KOG1240|consen  569 NTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDW--RLRGAFFDSIV  642 (1431)
T ss_pred             chHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccH--HHHHHHHhhcc
Confidence            11111121 12223445566666778888888888877752211   00113356888888988765  66665555566


Q ss_pred             HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHH-HHHHHHHHHHHhccCCCCHhHHHHHHH
Q 047123          399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKR-AVASCMGSLIKLMECPKPVGLQEAATD  477 (579)
Q Consensus       399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~-~i~~~v~~Lv~lL~~~~~~~v~~~a~~  477 (579)
                      .+|..-.. .-++.  ..++.|.+-|.++.+-|...|+.++.-|+...-.++ ++.+-++...-+| ...+.=+|..++.
T Consensus       643 gvsi~VG~-rs~se--yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL-~hPN~WIR~~~~~  718 (1431)
T KOG1240|consen  643 GVSIFVGW-RSVSE--YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL-CHPNLWIRRAVLG  718 (1431)
T ss_pred             ceEEEEee-eeHHH--HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe-eCchHHHHHHHHH
Confidence            55555111 11233  678888888999999999999999999986666665 4444466666677 6778899999999


Q ss_pred             HHHHhhcCCc
Q 047123          478 AVLSLLTVRS  487 (579)
Q Consensus       478 aL~~L~~~~~  487 (579)
                      .+...++.-.
T Consensus       719 iI~~~~~~ls  728 (1431)
T KOG1240|consen  719 IIAAIARQLS  728 (1431)
T ss_pred             HHHHHHhhhh
Confidence            9988876543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.037  Score=56.95  Aligned_cols=176  Identities=9%  Similarity=0.083  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHH-HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-----hhHHHHHhhcC-cH
Q 047123          344 LAQENAADCIATLAASGEYFRLL-IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-----DSAARILSSTT-SF  416 (579)
Q Consensus       344 ~v~~~a~~~L~~La~~~~~~r~~-l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~-g~  416 (579)
                      -++..|.+.+.-+.-+. ..|.. ..-..+....+..+.+..-  ..++.+++++.|++..     ++.+...+.-- -.
T Consensus       406 lv~~aA~Ra~~VyVLHp-~lr~d~~fv~~aa~~il~sl~d~~l--n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l  482 (728)
T KOG4535|consen  406 LVKAAASRALGVYVLHP-CLRQDVIFVADAANAILMSLEDKSL--NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL  482 (728)
T ss_pred             HHHHHHHhhceeEEecc-chhhhHHHHHHHHHHHHHHhhhHhH--hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence            35555665555444433 22222 2223344444555555444  6789999999998874     33332222200 12


Q ss_pred             HHHHHHHH---hcCCHHHHHHHHHHHHHhcC------ChhhHHHHHHHHHHHHH-hccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          417 IIQLGEFI---KRGNVLLQQVSSSLLGNLSI------SDGNKRAVASCMGSLIK-LMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       417 i~~L~~lL---~~~~~~v~~~A~~aL~~L~~------~~~~~~~i~~~v~~Lv~-lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +..++..-   ......|+.+|..+|.|+.+      ...++..+...+..++. .. ......|+.++|.+++||..+.
T Consensus       483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~-~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL-TEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee-cccccccchHHHHHHHHhhcCc
Confidence            22333222   23467899999999999982      12233333333444443 33 4557889999999999998764


Q ss_pred             cc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123          487 SN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA  523 (579)
Q Consensus       487 ~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~  523 (579)
                      .- .+..-......+.|.+++.+...--++-.|+++|.
T Consensus       562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence            32 11111112344567777755432224455555544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.03  E-value=0.0017  Score=43.70  Aligned_cols=40  Identities=25%  Similarity=0.504  Sum_probs=36.4

Q ss_pred             hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 047123          237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT  276 (579)
Q Consensus       237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~  276 (579)
                      ++++..+++.|++++|+++|.+++.+++..++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3578889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.91  E-value=0.22  Score=55.85  Aligned_cols=142  Identities=16%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             HHHHHHHHhccCCHH-HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQIGGVE-FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~-~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ..-.++..+..++.. .|..++..+.......++.   .++....+..-++-+ +.++.++..++.-+++++. .-.. .
T Consensus       198 ~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~---~vk~elr~~~~~lc~-d~~~~Vr~~~a~~l~~~a~-~~~~-~  271 (759)
T KOG0211|consen  198 HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDD---AVKRELRPIVQSLCQ-DDTPMVRRAVASNLGNIAK-VLES-E  271 (759)
T ss_pred             HHHHHHHHccchhhhhcchhhhhhhHHhccCCChH---HHHHHHHHHHHhhcc-ccchhhHHHHHhhhHHHHH-HHHH-H
Confidence            344556666665543 4555555555554433321   122233445555666 7788888888888888887 3222 2


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI  312 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL  312 (579)
                      .. ..+.++.+..+..+....+++.|...+.++...-+... =..+-..+.+++...+++..++.......
T Consensus       272 ~~-~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~  340 (759)
T KOG0211|consen  272 IV-KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKF  340 (759)
T ss_pred             HH-HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhh
Confidence            22 25778999999999989999988888887763211111 11123446677776666665554444333

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.91  E-value=0.0037  Score=45.37  Aligned_cols=53  Identities=19%  Similarity=0.124  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123          429 VLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSL  482 (579)
Q Consensus       429 ~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L  482 (579)
                      +.+|..|+++|.+++ ..++..+.+... ++.|+.+| .+++..||..|+.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence            468999999999998 555555555555 99999999 666779999999999875

...

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.87  E-value=0.28  Score=49.90  Aligned_cols=222  Identities=13%  Similarity=0.051  Sum_probs=156.7

Q ss_pred             HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-----HHHHh--cCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123          324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR-----LLIIQ--ERGLQRLMHLIQDSTSSIVTVENALLA  396 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r-----~~l~~--~g~i~~Lv~ll~~~~~~~~~~~~A~~a  396 (579)
                      .+...+.+..|+..|..-+-+.+..++.+..++.......+     ..+..  ...+..|+..-+    ++++--.+-..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~----~~dial~~g~m  146 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE----NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG----STTTHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc----CccccchHHHH
Confidence            46677888999999988888899999999988876433322     12222  223333333322    24677888888


Q ss_pred             HHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHHHHHhccCCCCH
Q 047123          397 ISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGSLIKLMECPKPV  469 (579)
Q Consensus       397 L~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~Lv~lL~~~~~~  469 (579)
                      |+.++.. .....++..  ..+..+.+..+..+-++...|...+..+- .+......+...     +...-++| .+++.
T Consensus       147 lRec~k~e~l~~~iL~~--~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NY  223 (335)
T PF08569_consen  147 LRECIKHESLAKIILYS--ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNY  223 (335)
T ss_dssp             HHHHTTSHHHHHHHHTS--GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSH
T ss_pred             HHHHHhhHHHHHHHhCc--HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCe
Confidence            9998888 456677777  78888999999999999999999999866 777776665555     67777899 88899


Q ss_pred             hHHHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC--hhHHHHHH--HcCc
Q 047123          470 GLQEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS--NGCRKRLV--AAGA  542 (579)
Q Consensus       470 ~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~--~~~r~~i~--~~g~  542 (579)
                      -.+..+...|+.|..+..|..   ..+.+...+..++.+|.+++.. ++-.|.-+.--+..+++  ++.+..+.  ....
T Consensus       224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~-Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kL  302 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKN-IQFEAFHVFKVFVANPNKPPPIVDILIKNREKL  302 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HH-HHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHH
T ss_pred             EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchh-hhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            999999999999999888855   6677777889999999998888 88888888887777663  22333333  2445


Q ss_pred             hHHHHhhhccC
Q 047123          543 YQHLQKLAETE  553 (579)
Q Consensus       543 ~~~L~~L~~~~  553 (579)
                      +..|.++....
T Consensus       303 l~fl~~f~~~~  313 (335)
T PF08569_consen  303 LRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHTTTTT-
T ss_pred             HHHHHhCCCCC
Confidence            55566655444

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.87  E-value=0.086  Score=51.71  Aligned_cols=223  Identities=10%  Similarity=0.054  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHhcC-cHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChhhHHHHHH-cCCHHHHHH
Q 047123          261 MPLKEKAAIGVEAITTDPENAWAISAYG-GVSVLIEAFRS--GTALTQSHAVGAIRNIAAVEDIKAALAE-EGAVPVLVQ  336 (579)
Q Consensus       261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~g-~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~~~~~l~~-~g~v~~Lv~  336 (579)
                      +-.+..|.+++.++...++.+..+-..+ .-..+++++++  ++.++|.+++-+++-++.+++..+.+-. -..+..++.
T Consensus       163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~  242 (432)
T COG5231         163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA  242 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3367888999999998888777665443 55677888876  5778999999999999998876632221 124556666


Q ss_pred             HhcCC-CHHHHHHHHHHHHHHhcCCh-hhHHHHHhcC-cHHHHHHhhccCCCChHHHHHHHHH---H----HHcccc---
Q 047123          337 SLTSS-SNLAQENAADCIATLAASGE-YFRLLIIQER-GLQRLMHLIQDSTSSIVTVENALLA---I----SSLSLS---  403 (579)
Q Consensus       337 lL~~~-~~~v~~~a~~~L~~La~~~~-~~r~~l~~~g-~i~~Lv~ll~~~~~~~~~~~~A~~a---L----~~L~~~---  403 (579)
                      +++.. .+.+...++..+.|++...+ ..-..+.-.| +.++.-.+++.+-++++++...-+.   |    ..+|..   
T Consensus       243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y  322 (432)
T COG5231         243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNY  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            66544 35688889999999987331 2222222233 3333333444443323333222111   1    011110   


Q ss_pred             ----------------------hhHHHHHhhcCcHHHHHHHHHhcCCHH-HHHHHHHHHHHhc-CChhhHHHHHHH--HH
Q 047123          404 ----------------------DSAARILSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLS-ISDGNKRAVASC--MG  457 (579)
Q Consensus       404 ----------------------~~~~~l~~~~~g~i~~L~~lL~~~~~~-v~~~A~~aL~~L~-~~~~~~~~i~~~--v~  457 (579)
                                            .+...+...+...+..|.++++...+. .-.-|+.=+..+. ..|+.+..+...  =.
T Consensus       323 ~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~  402 (432)
T COG5231         323 LNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKE  402 (432)
T ss_pred             HHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHH
Confidence                                  345555555556788899999877665 2234455555555 788888877776  56


Q ss_pred             HHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          458 SLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       458 ~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      .++.++ ++++++|+..|..|+..+..
T Consensus       403 ~im~L~-nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         403 IIMNLI-NHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHh-cCCCchhhHHHHHHHHHHHh
Confidence            778899 88889999999999887654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.86  E-value=0.0077  Score=61.78  Aligned_cols=298  Identities=15%  Similarity=0.091  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc-----ChhhHHHHHhcCCHH
Q 047123          176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA-----NDESRKIVFEEGGLG  250 (579)
Q Consensus       176 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~-----~~~~~~~i~~~g~l~  250 (579)
                      ..+|.+|+..|..++..-.-.+...  ......+..-+. ...+.+++.++.++..+...     .|+..+.-...|.+-
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~--~~l~RvI~~~~~-~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw  345 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYL--MELGRVICKCMG-EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW  345 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccCC-CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence            3577888888777653211111111  111111222234 56799999999999888651     222222222222111


Q ss_pred             HHH------H-HHccCCHHHHHHHHHHHHHhcCCC----cc-HHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 047123          251 PLL------R-ILETGSMPLKEKAAIGVEAITTDP----EN-AWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       251 ~Lv------~-lL~~~~~~v~~~aa~~L~~Ls~~~----~~-~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~  317 (579)
                      ...      . .-++..+..+...|.++.++...+    +| +..     .......-|.+ ++.-++..|.+++.-+..
T Consensus       346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVL  420 (728)
T KOG4535|consen  346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYVL  420 (728)
T ss_pred             HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEEe
Confidence            110      0 112223456778888888887311    11 110     11112222222 222344555555544445


Q ss_pred             ChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CChh---hHHHHHhcCcHHHHHHh-hccCCCChH
Q 047123          318 VEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIATLAA----SGEY---FRLLIIQERGLQRLMHL-IQDSTSSIV  388 (579)
Q Consensus       318 ~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~----~~~~---~r~~l~~~g~i~~Lv~l-l~~~~~~~~  388 (579)
                      ++..+.... -..+...+...+.+..-..++++.+++.|++.    .-++   ..+.+... .+..+++. ...+..+++
T Consensus       421 Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dk  499 (728)
T KOG4535|consen  421 HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDK  499 (728)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhh
Confidence            655544332 33445555556666667899999999999863    1122   11222111 12233332 233334468


Q ss_pred             HHHHHHHHHHHcccc-h----hHHHHHhhcCcHHHHHH-HHHhcCCHHHHHHHHHHHHHhcCChhhH--H-HHHHH-HHH
Q 047123          389 TVENALLAISSLSLS-D----SAARILSSTTSFIIQLG-EFIKRGNVLLQQVSSSLLGNLSISDGNK--R-AVASC-MGS  458 (579)
Q Consensus       389 ~~~~A~~aL~~L~~~-~----~~~~l~~~~~g~i~~L~-~lL~~~~~~v~~~A~~aL~~L~~~~~~~--~-~i~~~-v~~  458 (579)
                      ++.+++++|.|+... +    .....+..  +.+..+. ...-.+...||=+++.++.||-.|+...  . ..... .+.
T Consensus       500 V~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~  577 (728)
T KOG4535|consen  500 VKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA  577 (728)
T ss_pred             hhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence            999999999999865 2    11122222  2333222 2234567789999999999999776542  1 11122 788


Q ss_pred             HHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          459 LIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       459 Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      |..++.+.++..+|..|+.+|.--..
T Consensus       578 L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  578 LTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHHHHhccceEeehhhhhhcCCCC
Confidence            88888788899999999999877554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.81  E-value=0.21  Score=53.87  Aligned_cols=297  Identities=17%  Similarity=0.142  Sum_probs=150.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE  245 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~  245 (579)
                      .++...+ |+...+.-|...|....+.-|+...     .++..++.|.+ +.+..+|..|++.|-.+|.++++....+  
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            3344434 6888999999999988887777643     46888999999 9999999999999999999667777666  


Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHhhc---C
Q 047123          246 EGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR---SGTALTQSHAVGAIRNIAA---V  318 (579)
Q Consensus       246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLs~---~  318 (579)
                         ...|+++|.+.++.....+-.+|..|-. ++        .+.+..++..+.   .++..+++.++..|..-..   .
T Consensus        98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             ---HHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             ---HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence               6789999998887767777777766653 22        245567777665   5788889998887743221   1


Q ss_pred             hhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHHhcCcHHHHHHhhc--cC-C-CChHH
Q 047123          319 EDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA----SGEYFRLLIIQERGLQRLMHLIQ--DS-T-SSIVT  389 (579)
Q Consensus       319 ~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~----~~~~~r~~l~~~g~i~~Lv~ll~--~~-~-~~~~~  389 (579)
                      +... ..=.+.-++..+-..|.+-+..=-.....+|..+-.    .....+..+     ++.+....+  .. + .+++.
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~sD~e~  241 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPSDPES  241 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SSSHHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCcCHHH
Confidence            1111 011111233344455655443333444455555544    122222222     222222211  11 1 11122


Q ss_pred             HHHHHHHHH-Hc---ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---ChhhHHHHHHH-HHHHHH
Q 047123          390 VENALLAIS-SL---SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI---SDGNKRAVASC-MGSLIK  461 (579)
Q Consensus       390 ~~~A~~aL~-~L---~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~---~~~~~~~i~~~-v~~Lv~  461 (579)
                      ...-..++. ++   +....-..++..   +...++..+..-+.+.|..-+.++..++.   ..+ ...+.+. ...|..
T Consensus       242 Idrli~C~~~Alp~fs~~v~Sskfv~y---~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~  317 (556)
T PF05918_consen  242 IDRLISCLRQALPFFSRGVSSSKFVNY---MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKK  317 (556)
T ss_dssp             HHHHHHHHHHHGGG-BTTB--HHHHHH---HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHhcCCCChHHHHHH---HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHH
Confidence            222222211 22   222222223222   22222222233355777788888888882   223 3333344 455555


Q ss_pred             hccCCC------CHhHHHHHHHHHHHhhcCCcchhHH
Q 047123          462 LMECPK------PVGLQEAATDAVLSLLTVRSNRKEL  492 (579)
Q Consensus       462 lL~~~~------~~~v~~~a~~aL~~L~~~~~~~~~~  492 (579)
                      .+ ..+      .....|+...++..|+...++...+
T Consensus       318 ym-P~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~  353 (556)
T PF05918_consen  318 YM-PSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF  353 (556)
T ss_dssp             TS-----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred             hC-CCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence            44 211      3355788888889998877664433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.74  E-value=0.048  Score=48.59  Aligned_cols=138  Identities=12%  Similarity=0.139  Sum_probs=101.5

Q ss_pred             HHHHHhhcCcHHHHHHHHHhcCCH------HHHHHHHHHHHHhcCChh-hHHHHHHH-HHHHHHhccC-CCCHhHHHHHH
Q 047123          406 AARILSSTTSFIIQLGEFIKRGNV------LLQQVSSSLLGNLSISDG-NKRAVASC-MGSLIKLMEC-PKPVGLQEAAT  476 (579)
Q Consensus       406 ~~~l~~~~~g~i~~L~~lL~~~~~------~v~~~A~~aL~~L~~~~~-~~~~i~~~-v~~Lv~lL~~-~~~~~v~~~a~  476 (579)
                      ...++..  +++..|+.+++++..      +....++.++.+|-.+.- .-+.+-.. +...+..+.. ..+..+...|.
T Consensus         4 A~EFI~~--~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISR--DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             HHHHHhc--cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            3456777  999999999998873      666778888888873322 22233333 6666666632 23688999999


Q ss_pred             HHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHH
Q 047123          477 DAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHL  546 (579)
Q Consensus       477 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L  546 (579)
                      ..|-+++..++..-..+.++--++.|+..|...++. .+.++++.+..|....+.+.|+.|.+.=.-+++
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~-iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~  150 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQE-IQTNAIALINALFLKADDSKRKEIAETLSQKQI  150 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            999999998888677776788899999999998777 889999989888877665567766654333333

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.43  Score=56.03  Aligned_cols=322  Identities=13%  Similarity=0.062  Sum_probs=173.3

Q ss_pred             hhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhHHHHH--hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 047123          202 KEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESRKIVF--EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP  278 (579)
Q Consensus       202 ~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~  278 (579)
                      +.+.|-.+++|-+ +. .-.-+..|+.-++.|+. .  .++.+.  -...||.|.++=-+++..+|.....+=..|..++
T Consensus       954 qPdLVYKFM~LAn-h~A~wnSk~GaAfGf~~i~~-~--a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen  954 QPDLVYKFMQLAN-HNATWNSKKGAAFGFGAIAK-Q--AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS 1029 (1702)
T ss_pred             ChHHHHHHHHHhh-hhchhhcccchhhchHHHHH-H--HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh
Confidence            3444555555555 32 24456667777777776 2  222222  1246888888877888888887666666677765


Q ss_pred             ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh---HHHHHHcCCHHHHHHHhcCCCHHHHHH---HHHH
Q 047123          279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI---KAALAEEGAVPVLVQSLTSSSNLAQEN---AADC  352 (579)
Q Consensus       279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~---~~~l~~~g~v~~Lv~lL~~~~~~v~~~---a~~~  352 (579)
                      .....-.-..++.-|+.-|.+....+|+.+|.+|..|-...+.   .+.+-+  ....+.+.+++-.+.+|+.   ++.+
T Consensus      1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVMDDIKESVREAADKAARA 1107 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444566778888888888999999999999999874332   333322  3344455555444455554   5566


Q ss_pred             HHHHhcC--Ch-h-hHHHHHhcCcHHHHHH--hhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHH
Q 047123          353 IATLAAS--GE-Y-FRLLIIQERGLQRLMH--LIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFI  424 (579)
Q Consensus       353 L~~La~~--~~-~-~r~~l~~~g~i~~Lv~--ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL  424 (579)
                      |..++..  +. + .+..-.-...+|.|+.  .+ +.-  .+++..+...+..|+..  ........   ..++.|++..
T Consensus      1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v--~evr~~si~tl~dl~Kssg~~lkP~~~---~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKV--NEVRRFSIGTLMDLAKSSGKELKPHFP---KLIPLLLNAY 1181 (1702)
T ss_pred             HHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cch--HHHHHHHHHHHHHHHHhchhhhcchhh---HHHHHHHHHc
Confidence            6666521  11 0 0100011223344433  12 222  37888888888888876  22222222   3566666665


Q ss_pred             hcCCHHHH-----------HHHHHHHHH-hcCChhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          425 KRGNVLLQ-----------QVSSSLLGN-LSISDGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       425 ~~~~~~v~-----------~~A~~aL~~-L~~~~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      ..-.+.|-           .+|...++. .+.+....+.+..+            +|.+.++++.+-....+..++..+.
T Consensus      1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred             cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence            54444332           222222221 12222222222221            7777777766666667777887777


Q ss_pred             HhhcC-CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHH
Q 047123          481 SLLTV-RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLV  538 (579)
Q Consensus       481 ~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~  538 (579)
                      -|+.. ....+-+.  +.-+..+.....++++. ++++-..+...|+...+++-.+.++
T Consensus      1262 ~L~~r~~~emtP~s--gKll~al~~g~~dRNes-v~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYS--GKLLRALFPGAKDRNES-VRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred             HHHHHhccccCcch--hHHHHHHhhccccccHH-HHHHHHHHHHHHHhcCChHHHHHHH
Confidence            77642 11111111  22334555556666666 4554444455555444332334443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.68  E-value=0.2  Score=50.65  Aligned_cols=196  Identities=21%  Similarity=0.200  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      .+.....+...+..+.......|..++..|..+....... ..+.  ....+..+.+.++ .+..+.+..|++++..++-
T Consensus        38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lk-kg~~~E~~lA~~~l~Ll~l  115 (309)
T PF05004_consen   38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLK-KGKSEEQALAARALALLAL  115 (309)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHhh
Confidence            3444445778888888888999999999999998654322 2332  3456788888888 7777777888888888776


Q ss_pred             c--ChhhHHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHH--Hhc-C----
Q 047123          235 A--NDESRKIVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT----DPENAWAISAYGGVSVLIE--AFR-S----  299 (579)
Q Consensus       235 ~--~~~~~~~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~--ll~-~----  299 (579)
                      .  .......++ ....|+|.+++.+++  ..++..++.+|.-++.    +++.....  ...+..++.  ..+ +    
T Consensus       116 tlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~  192 (309)
T PF05004_consen  116 TLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAP  192 (309)
T ss_pred             hcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcc
Confidence            2  123333443 356888999998764  4566667767766652    22222111  112221111  111 1    


Q ss_pred             -----CCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          300 -----GTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       300 -----~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                           +++.+...|+.+-.-|.. .+.....-.-...+|.|+.+|.+.+.+||..|-.+|+-+-
T Consensus       193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                 124566666666555543 3332222222346899999999999999999999988764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=1.8  Score=49.42  Aligned_cols=312  Identities=17%  Similarity=0.136  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123          159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~  238 (579)
                      .+.+.+..|+..|.+.+..+|..|+..++.+....|...    ...+|...+.++.+..++..-..|+-+|..++. -.-
T Consensus       338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rGl  412 (1133)
T KOG1943|consen  338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RGL  412 (1133)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cCC
Confidence            456778888899999999999999999999998887332    234466666666523346677789999999988 111


Q ss_pred             hHHHHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhcC-CCcc-HHHHHhcCcHHH-HHHHhcCCCHHHHHH
Q 047123          239 SRKIVFEEGGLGPLLRILETG--------SMPLKEKAAIGVEAITT-DPEN-AWAISAYGGVSV-LIEAFRSGTALTQSH  307 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~lL~~~--------~~~v~~~aa~~L~~Ls~-~~~~-~~~i~~~g~i~~-Lv~ll~~~~~~~~~~  307 (579)
                      ...... ..++|.+++.|...        ...+|..||.+++.++. +... -.-+. ...... |+..+=+.+..++..
T Consensus       413 Llps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  413 LLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             cchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHH
Confidence            110000 12344555555432        45689999999999984 2221 11111 111122 223333556678888


Q ss_pred             HHHHHHHhhcC----h----------------------hhHHHHHH-cCCHHHHHHHh-----cCCCHHHHHHHHHHHHH
Q 047123          308 AVGAIRNIAAV----E----------------------DIKAALAE-EGAVPVLVQSL-----TSSSNLAQENAADCIAT  355 (579)
Q Consensus       308 a~~aL~nLs~~----~----------------------~~~~~l~~-~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~~  355 (579)
                      |..++.....-    |                      +.+..+.+ .|....+++-+     .+-+..+++.++++|.+
T Consensus       491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~  570 (1133)
T KOG1943|consen  491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK  570 (1133)
T ss_pred             HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            88888544321    1                      01222222 33444444433     34588999999999999


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc----h-hHHHHHhhc-Cc---HHHHHHHH-Hh
Q 047123          356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS----D-SAARILSST-TS---FIIQLGEF-IK  425 (579)
Q Consensus       356 La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~----~-~~~~l~~~~-~g---~i~~L~~l-L~  425 (579)
                      |+...+    .....+.++.++....+.+.  ..+....-+...+...    . ....+.+.. .|   .++.+... +.
T Consensus       571 Ls~~~p----k~~a~~~L~~lld~~ls~~~--~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~  644 (1133)
T KOG1943|consen  571 LSLTEP----KYLADYVLPPLLDSTLSKDA--SMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFY  644 (1133)
T ss_pred             HHHhhH----HhhcccchhhhhhhhcCCCh--HHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhc
Confidence            886433    34556778888887766654  4555444444433332    1 111111110 01   11111111 11


Q ss_pred             cC-CHHHHHHHHHHHHHhc-CChhhHH-HHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          426 RG-NVLLQQVSSSLLGNLS-ISDGNKR-AVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       426 ~~-~~~v~~~A~~aL~~L~-~~~~~~~-~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      .+ ..-.+......+..++ ..+.... .+.+. -..+.+.+ .. +..+|..+..++..++..
T Consensus       645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~-~n~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TL-PNQIRDAAVSAVSDLVST  706 (1133)
T ss_pred             cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cc-hHHHHHHHHHHHHHHHHH
Confidence            12 1334455667777777 4444333 44444 33333333 22 337888888888888753

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.65  E-value=0.011  Score=48.59  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF-HHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~-~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      |...++.|++++..++.++..+.+.|++|.++..... ..+|-++|.|..+|.+|+..++++++.+.+-
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            5677889999999999999999999999999986431 5579999999999999999889998887653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.63  E-value=0.0031  Score=45.80  Aligned_cols=55  Identities=18%  Similarity=0.223  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 047123          219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI  274 (579)
Q Consensus       219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~L  274 (579)
                      +.+|..|+.+|++++...++.... ....+++.|+..|++++..|+..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998733333333 4467899999999999999999999999875

...

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.56  E-value=0.31  Score=47.05  Aligned_cols=204  Identities=14%  Similarity=0.146  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccC---------CH---HHHHHHHHHHHHhcCCCccHHHH
Q 047123          218 QSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETG---------SM---PLKEKAAIGVEAITTDPENAWAI  284 (579)
Q Consensus       218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~---------~~---~v~~~aa~~L~~Ls~~~~~~~~i  284 (579)
                      +++.|+.|+.-|+.--+..++....+-. -|.+..|++=+-+-         +.   .-..+|...|..++.+++.+..|
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            5788998877766655434444444443 37676666554331         12   22345666677888999999999


Q ss_pred             HhcCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          285 SAYGGVSVLIEAFRSGT-----ALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       285 ~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                      .+....-.|..+++..+     +.++-.+++++..+..  +.+.-..+.+...+|..++.+..+++-.+..|...+..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99998777777776432     3578889999999987  4556677778899999999999999999999999988887


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123          358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS  437 (579)
Q Consensus       358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~  437 (579)
                      .++..          +.-+   ..+    .+--.....+|.+                   .+..+.+..++.+-....+
T Consensus       168 ~dd~G----------L~yi---C~t----~eRf~av~~vL~~-------------------mV~~l~~~pS~RLLKhIIr  211 (262)
T PF04078_consen  168 LDDVG----------LNYI---CQT----AERFFAVAMVLNK-------------------MVEQLVKQPSPRLLKHIIR  211 (262)
T ss_dssp             HSHHH----------HHHH---TSS----HHHHHHHHHHHHH-------------------HHHHHHHS--HHHHHHHHH
T ss_pred             cchhH----------HHHH---hcC----HHHHHHHHHHHHH-------------------HHHHHccCCChhHHHHHHH
Confidence            65432          1110   000    0111111111111                   1122345566677777778


Q ss_pred             HHHHhcCChhhHHHHHHHHH
Q 047123          438 LLGNLSISDGNKRAVASCMG  457 (579)
Q Consensus       438 aL~~L~~~~~~~~~i~~~v~  457 (579)
                      +-.+|+.++..+.++...+|
T Consensus       212 CYlRLsdnprar~aL~~~LP  231 (262)
T PF04078_consen  212 CYLRLSDNPRAREALRQCLP  231 (262)
T ss_dssp             HHHHHTTSTTHHHHHHHHS-
T ss_pred             HHHHHccCHHHHHHHHHhCc
Confidence            88888888888887777643

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.3  Score=53.25  Aligned_cols=291  Identities=11%  Similarity=0.086  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123          158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      |-...++|...+.|.+.+.-+|+.|.-++..+-+..+.    + -.++-..+-.+|....|+....+|.-.|...   ++
T Consensus       130 ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~  201 (948)
T KOG1058|consen  130 ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----L-IPDAPELIESFLLTEQDPSCKRNAFLMLFTT---DP  201 (948)
T ss_pred             HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----h-cCChHHHHHHHHHhccCchhHHHHHHHHHhc---CH
Confidence            44456788888899999999999999888877543211    1 1222223333443256677777764443332   22


Q ss_pred             hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      +..-.....     -+.-..+-+...+......+...+. ++.-+.     ..++.+..+|.+.++.+...|+++|.+|+
T Consensus       202 ErAl~Yl~~-----~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS  271 (948)
T KOG1058|consen  202 ERALNYLLS-----NIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS  271 (948)
T ss_pred             HHHHHHHHh-----hHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence            222111110     0111111123333333333333332 111111     12234444444433333333333333333


Q ss_pred             cChh------------------hHHHHH---------------HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123          317 AVED------------------IKAALA---------------EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF  363 (579)
Q Consensus       317 ~~~~------------------~~~~l~---------------~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~  363 (579)
                      ..+.                  |...++               -+|.+--++++|++.+-+++.+++.....|..+.   
T Consensus       272 ~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr---  348 (948)
T KOG1058|consen  272 NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR---  348 (948)
T ss_pred             CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---
Confidence            3221                  111111               0122233344555556666666666555555432   


Q ss_pred             HHHHHhcCcHHHHHHhh-----ccCC----CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHH
Q 047123          364 RLLIIQERGLQRLMHLI-----QDST----SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQ  433 (579)
Q Consensus       364 r~~l~~~g~i~~Lv~ll-----~~~~----~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~  433 (579)
                              -+..++.++     ++++    ...+.|..-..++..++.. +...    +  .+++.|++.+.+.++..-.
T Consensus       349 --------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a----a--tvV~~ll~fisD~N~~aas  414 (948)
T KOG1058|consen  349 --------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA----A--TVVSLLLDFISDSNEAAAS  414 (948)
T ss_pred             --------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH----H--HHHHHHHHHhccCCHHHHH
Confidence                    233333333     2222    1235577777888877765 3222    2  5778899999888887776


Q ss_pred             HHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123          434 VSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       434 ~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~  487 (579)
                      .....+...- ..|..|..+.+. ++.+-.+    .+..+...+++.++..+....
T Consensus       415 ~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i----rS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  415 DVLMFVREAIEKFPNLRASIIEKLLETFPQI----RSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHhhhhh----cccccchhHHHHHHHHHhhhH
Confidence            6677777666 777777776665 3333222    355677788888887776544

>PRK14707 hypothetical protein; Provisional

Probab=96.55  E-value=2.4  Score=51.74  Aligned_cols=377  Identities=12%  Similarity=0.062  Sum_probs=193.8

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCCHHHH
Q 047123          175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALS-IIVSANDESRKIVFEEGGLGPL  252 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~-~La~~~~~~~~~i~~~g~l~~L  252 (579)
                      +..+...|+..|..-...+++.++.+-..| |...++ +-+ .++..+-..|+..|. .+.. +++.++.+-..|+-..|
T Consensus       345 d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsK-Wp~~~~c~~aa~~LA~~l~~-d~~l~~~~~~Q~van~l  421 (2710)
T PRK14707        345 DNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSK-WPDTPVCAAAASALAEHVVD-DLELRKGLDPQGVSNAL  421 (2710)
T ss_pred             CchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhc-CCCchHHHHHHHHHHHHhcc-ChhhhhhcchhhHHHHH
Confidence            444555666666666666767666665555 444444 545 676555556666655 6666 88888888776744444


Q ss_pred             HHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHH-HHHHHHHHHhhcChhhHHHHHHcCC
Q 047123          253 LRILETGSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTALTQ-SHAVGAIRNIAAVEDIKAALAEEGA  330 (579)
Q Consensus       253 v~lL~~~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~a~~aL~nLs~~~~~~~~l~~~g~  330 (579)
                      -.+-+=++..+...++..|. .++.+.+.+..+--.++...|-.+-+=.|..+- ..+-.....|+...+.++.|--.++
T Consensus       422 nalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~  501 (2710)
T PRK14707        422 NALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEV  501 (2710)
T ss_pred             HHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHH
Confidence            44444467777777777776 466777777777655544443333333444444 4444444566666666655544333


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-ccCCCChHHHHHHHHHHHHcccc-hhHHH
Q 047123          331 VPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI-QDSTSSIVTVENALLAISSLSLS-DSAAR  408 (579)
Q Consensus       331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L~~~-~~~~~  408 (579)
                      ...|-.+-+-.+......++..|..-...+......+...+ +..+++-+ +....  ..-+.++..|..+... .....
T Consensus       502 ~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s--~~C~~A~~~iA~~l~~~~~~~~  578 (2710)
T PRK14707        502 VIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDK--QLCAVAASGLAERLADEPQLPK  578 (2710)
T ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCch--hHHHHHHHHHHHHhhcchhhHH
Confidence            33332222334433333333333322222222222222222 23333333 32222  4445555555554333 22223


Q ss_pred             HHhhcCcHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          409 ILSSTTSFIIQLGEFIKRG--NVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       409 l~~~~~g~i~~L~~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      -+..  .-+..+++.|+..  ....+..+.++-..+...++.+..+... +..+++-|.+-.....++.++..|..-...
T Consensus       579 ~L~a--q~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~  656 (2710)
T PRK14707        579 DLHR--QGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVG  656 (2710)
T ss_pred             hhhh--hHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhh
Confidence            3333  4567777777654  3445555555555565777777776666 888888774444444455555544433222


Q ss_pred             CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH-HHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchHHHHHH
Q 047123          486 RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT-AAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGAKKVLQ  562 (579)
Q Consensus       486 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L-~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~ak~~~~  562 (579)
                      ......-+ ....|..+++-|..=.+...-..++..| ..|+....  .|..+-..++...|-.|.+-. .+..+++..
T Consensus       657 ~~~l~~~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~--Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~  732 (2710)
T PRK14707        657 DRLLRKTF-NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADPG--LRKELNPVDVANALNALSKWPRTPVCAAVAS  732 (2710)
T ss_pred             chhhHhhc-chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChh--hHhhcCHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence            22222222 2455666776665332222333333333 44555444  566655555555555566554 334444443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.12  Score=56.76  Aligned_cols=237  Identities=18%  Similarity=0.123  Sum_probs=156.5

Q ss_pred             ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHH
Q 047123          236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIR  313 (579)
Q Consensus       236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~  313 (579)
                      ...-+...++.|++..|+++.....+..+.....+|. .+....+-.     ...++.+.+.+..... .-...++.+++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            5556777889999999999999988888888888888 443211111     2244555555543221 23456788899


Q ss_pred             Hhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccCCCChHHHH
Q 047123          314 NIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       314 nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~~~~~~~~~  391 (579)
                      ||++ ++..|..+..+-+++.+-.++...++..|..++.++.||..++--+.+.+++ ...++.....+.....  ....
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E--~~~l  645 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE--KFEL  645 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh--HHhh
Confidence            9988 4556777888888887777788889999999999999999876555666666 4455665556665433  5666


Q ss_pred             HHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCC
Q 047123          392 NALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECP  466 (579)
Q Consensus       392 ~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~  466 (579)
                      .+++++..+...  ..+.. ...-..+...+..++.+++.++|......+.|+. ...+....+...  ++.+...- ..
T Consensus       646 A~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~-~~  723 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ-KL  723 (748)
T ss_pred             hccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH-Hh
Confidence            666666655554  23332 2221246677888899999999999988888865 444555555554  44444433 22


Q ss_pred             CCHhHHHHHHHHHHH
Q 047123          467 KPVGLQEAATDAVLS  481 (579)
Q Consensus       467 ~~~~v~~~a~~aL~~  481 (579)
                      +....++.+..+|..
T Consensus       724 ~~a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  724 NRAPKREDAAPCLSA  738 (748)
T ss_pred             hhhhhhhhhhhHHHH
Confidence            344455555555544

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.54  E-value=0.75  Score=52.09  Aligned_cols=240  Identities=15%  Similarity=0.204  Sum_probs=144.1

Q ss_pred             HHhhCcHHHHHHhhccCC-----CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc----CC----HHHHHH
Q 047123          200 VAKEGNVGYLISLLDFHH-----QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET----GS----MPLKEK  266 (579)
Q Consensus       200 i~~~g~v~~Lv~LL~~~~-----~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~----~~----~~v~~~  266 (579)
                      +.+.|++..|+.++. +-     ....-...+..|...+. -+.+|+.+++.|+++.|+..|..    +.    .++-+.
T Consensus       113 ~~~~gGL~~ll~~l~-~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  113 LAECGGLEVLLSRLD-SIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             hhcCCCHHHHHHHHH-hhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            446899999999987 42     23455556677777777 89999999999999999998852    23    566676


Q ss_pred             HHHHHHHhcCCCc-----cHHHHHh--------cCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcChhhH-HHHHHc
Q 047123          267 AAIGVEAITTDPE-----NAWAISA--------YGGVSVLIEAFRS----GTALTQSHAVGAIRNIAAVEDIK-AALAEE  328 (579)
Q Consensus       267 aa~~L~~Ls~~~~-----~~~~i~~--------~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~~~~~~-~~l~~~  328 (579)
                      ...++..|.....     .-.....        ..-+..+++.+.+    .++.+....+++|-+|+...+.+ +.+++.
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            6666666652111     1111111        1136677776665    35788889999999998854443 333331


Q ss_pred             CCHHHHHHH--hcC-CCHHHHHHHHHHHHHHhcC------ChhhHHHHHhcCcHHHHHHhhccCCC------ChH-----
Q 047123          329 GAVPVLVQS--LTS-SSNLAQENAADCIATLAAS------GEYFRLLIIQERGLQRLMHLIQDSTS------SIV-----  388 (579)
Q Consensus       329 g~v~~Lv~l--L~~-~~~~v~~~a~~~L~~La~~------~~~~r~~l~~~g~i~~Lv~ll~~~~~------~~~-----  388 (579)
                        +.+.+++  +.. ..++- ..-+.+++.++.+      ....|..+++.|++...++++..+.+      +++     
T Consensus       271 --F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l  347 (802)
T PF13764_consen  271 --FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL  347 (802)
T ss_pred             --HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence              1221111  111 11111 2335666666532      13578999999999999888865543      122     


Q ss_pred             ---HHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhcCChh
Q 047123          389 ---TVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLSISDG  447 (579)
Q Consensus       389 ---~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~~~~~  447 (579)
                         ....+++.|..|+.+ ...+..+..  +++ .+++.|+.-.  ..+=..|-.+|-.|..+++
T Consensus       348 ~~psLp~iL~lL~GLa~gh~~tQ~~~~~--~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  348 SRPSLPYILRLLRGLARGHEPTQLLIAE--QLL-PLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             cCCcHHHHHHHHHHHHhcCHHHHHHHHh--hHH-HHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence               234577888888887 445555655  666 6666665432  3333444444555554444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.53  E-value=0.47  Score=50.24  Aligned_cols=181  Identities=15%  Similarity=0.093  Sum_probs=101.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHc
Q 047123          249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEE  328 (579)
Q Consensus       249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~  328 (579)
                      .|-|-..|++.-..+...++++++.++... ....+. ...+..|-.+|.+.....|..|.+.|..|+.....+-..+. 
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN-  342 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN-  342 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC-
Confidence            445555666655678888999999888522 111111 23557777888888889999999999999873322211111 


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHH
Q 047123          329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAA  407 (579)
Q Consensus       329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~  407 (579)
                         +.+-.++.+.+..+-..|+.+|..-.. ++..      ...+..+..++.+-++  .-+..+..+++.||.. +...
T Consensus       343 ---~evEsLIsd~Nr~IstyAITtLLKTGt-~e~i------drLv~~I~sfvhD~SD--~FKiI~ida~rsLsl~Fp~k~  410 (898)
T COG5240         343 ---KEVESLISDENRTISTYAITTLLKTGT-EETI------DRLVNLIPSFVHDMSD--GFKIIAIDALRSLSLLFPSKK  410 (898)
T ss_pred             ---hhHHHHhhcccccchHHHHHHHHHcCc-hhhH------HHHHHHHHHHHHhhcc--CceEEeHHHHHHHHhhCcHHH
Confidence               223345556665666666666554222 1111      1122333333444343  5677788888888876 3322


Q ss_pred             HHHhhcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhc-CChhhHH
Q 047123          408 RILSSTTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLS-ISDGNKR  450 (579)
Q Consensus       408 ~l~~~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~-~~~~~~~  450 (579)
                      ..      .+.-|... ++.|..+.+..+..++..+. ..|+.++
T Consensus       411 ~s------~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE  449 (898)
T COG5240         411 LS------YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE  449 (898)
T ss_pred             HH------HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH
Confidence            21      12222222 34566677777777777666 4444443

>PRK14707 hypothetical protein; Provisional

Probab=96.50  E-value=3.2  Score=50.85  Aligned_cols=380  Identities=15%  Similarity=0.100  Sum_probs=194.4

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHH-HHHhhccChhhHHHHHhcCCHHH
Q 047123          174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLA-LSIIVSANDESRKIVFEEGGLGP  251 (579)
Q Consensus       174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~a-L~~La~~~~~~~~~i~~~g~l~~  251 (579)
                      .+..+...|+..|..-..++++.++.+-..+ +...++ |-+ .++..+-..|+.+ -..++. +++.++.+-..| +..
T Consensus       302 pd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsK-Wpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~q~-~a~  377 (2710)
T PRK14707        302 ADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSK-WPDNPVCAAAVSALAERLVA-DPELRKDLEPQG-VSS  377 (2710)
T ss_pred             CCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhc-CCCchhHHHHHHHHHHHhcc-CHhhhcccchhH-HHH
Confidence            3555566666666666666666665544444 444444 445 6664444444444 447777 888887776555 555


Q ss_pred             HHHHHcc-CCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH-HHhhcChhhHHHHHHc
Q 047123          252 LLRILET-GSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI-RNIAAVEDIKAALAEE  328 (579)
Q Consensus       252 Lv~lL~~-~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLs~~~~~~~~l~~~  328 (579)
                      .+..|.. ++..+...++..|. .+..+++.+..+-..|+-..|-.+.+=.+..+-..++..| ..++.+.+.+..|--.
T Consensus       378 ~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~  457 (2710)
T PRK14707        378 VLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI  457 (2710)
T ss_pred             HHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH
Confidence            5666654 55556666666665 5777888888887777766555566556665555555555 4555566666655433


Q ss_pred             CCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHH
Q 047123          329 GAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAA  407 (579)
Q Consensus       329 g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~  407 (579)
                      + |...++.+ +-.+..+...++..|..-...++..+..+--.++...|-.+.+-.+. ....+.+.+.-..+.......
T Consensus       458 ~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~-~~c~~A~~~lA~rl~~~~~l~  535 (2710)
T PRK14707        458 N-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDT-PICAEAASALAERVVDELQLR  535 (2710)
T ss_pred             H-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHhccchhhh
Confidence            3 33334444 33455566666666665444444444433333334444444443332 222223333333333222222


Q ss_pred             HHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          408 RILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       408 ~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      ..+..  .-+..+++-|. ..+...-+.+...|..+. ..+..+..|... |..+++-|.+-.+......++..|.....
T Consensus       536 ~~~~~--~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~  613 (2710)
T PRK14707        536 KAFDA--HQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLV  613 (2710)
T ss_pred             hhhhh--HHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Confidence            22121  23344444443 333444455555555544 666777777665 99999988444443333333333433333


Q ss_pred             CCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH-HHhCCCChhHHHHHHHcCchHHHHhhhccCC-chHHHHHH
Q 047123          485 VRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA-AVLGGGSNGCRKRLVAAGAYQHLQKLAETEV-PGAKKVLQ  562 (579)
Q Consensus       485 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~-~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~-~~ak~~~~  562 (579)
                      ..+....-+ +...+..+++-|..-......+.++..|. .+.....  .+..|-..++.-.|-.|.+..+ +..+++++
T Consensus       614 ~~~~lr~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~--l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~  690 (2710)
T PRK14707        614 DEPDLRKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRL--LRKTFNSLDVANALNALSKWPDTPVCAAAAG  690 (2710)
T ss_pred             cChhhhhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchh--hHhhcchHHHHHHHHhhhcCCCchHHHHHHH
Confidence            333332222 34566666666633222213333333332 2333333  4445544444444445555543 34555555


Q ss_pred             HH
Q 047123          563 RL  564 (579)
Q Consensus       563 ~l  564 (579)
                      .|
T Consensus       691 ~L  692 (2710)
T PRK14707        691 GM  692 (2710)
T ss_pred             HH
Confidence            44

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.50  E-value=0.014  Score=47.91  Aligned_cols=59  Identities=17%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123          345 AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       345 v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                      .+...+.+|+|++..++..+..+.+.|+++.+++....+..++.++++|..+|+||+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~   60 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG   60 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence            35678899999999999999999999999999998766665679999999999999998

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.43  E-value=0.44  Score=52.85  Aligned_cols=314  Identities=15%  Similarity=0.123  Sum_probs=175.7

Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc------CcHH
Q 047123          218 QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAY------GGVS  291 (579)
Q Consensus       218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~------g~i~  291 (579)
                      +....-.++..|+.|+. +......+++.|+|..|+.+=+  ..+.-.....+|..|+..+..-+.+..+      .++.
T Consensus       366 d~~l~~~~~k~~~~l~~-h~kfa~~fv~~~gi~kll~vpr--~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~  442 (1516)
T KOG1832|consen  366 DSPLLPDVMKLICALAA-HRKFAAMFVERRGILKLLAVPR--VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK  442 (1516)
T ss_pred             cccccHHHHHHHHHHHH-hhHHHHHHHHhhhhHHHhcCCC--chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence            34455567888888888 8888899999998877665532  1222344456777777766655555442      2444


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC--------C-----------CHHHHHHHHHH
Q 047123          292 VLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS--------S-----------SNLAQENAADC  352 (579)
Q Consensus       292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~--------~-----------~~~v~~~a~~~  352 (579)
                      .-+.++.......+.++.......-.....-+.+-....+..|+.+++.        .           +..+..+.|.+
T Consensus       443 ~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~a  522 (1516)
T KOG1832|consen  443 LAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFA  522 (1516)
T ss_pred             HHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHH
Confidence            4445555443333333332221111122222233334455555555531        1           12334445555


Q ss_pred             HHHH-----hcCChhhHHHHHhcCcHHHHHHhhccCC-C---ChHHHHHHHHHHHHcccc---------hhHHHHHhhcC
Q 047123          353 IATL-----AASGEYFRLLIIQERGLQRLMHLIQDST-S---SIVTVENALLAISSLSLS---------DSAARILSSTT  414 (579)
Q Consensus       353 L~~L-----a~~~~~~r~~l~~~g~i~~Lv~ll~~~~-~---~~~~~~~A~~aL~~L~~~---------~~~~~l~~~~~  414 (579)
                      |..-     ...-+.++..-++.|++...+.-+.... +   +.+..+..++-+..+...         +..+.++..  
T Consensus       523 lR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkl--  600 (1516)
T KOG1832|consen  523 LRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKL--  600 (1516)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHh--
Confidence            5442     1112233444445555554444332222 1   112233333322222221         456667777  


Q ss_pred             cHHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCChhhHHHHHHH----------HHHHHHhc--cCC-CCHhHHH
Q 047123          415 SFIIQLGEFIKRG--------NVLLQQVSSSLLGNLSISDGNKRAVASC----------MGSLIKLM--ECP-KPVGLQE  473 (579)
Q Consensus       415 g~i~~L~~lL~~~--------~~~v~~~A~~aL~~L~~~~~~~~~i~~~----------v~~Lv~lL--~~~-~~~~v~~  473 (579)
                      +++..++++....        -.+....|...|+-+..-|+.+..+..+          +..++..-  +.. -+++++.
T Consensus       601 s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~  680 (1516)
T KOG1832|consen  601 SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ  680 (1516)
T ss_pred             HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence            8888888886532        2356667777777777888999888877          22233222  111 2789999


Q ss_pred             HHHHHHHHhhcCCc-chh----------------------------------HHHhhcccHHHHHhhcCCCchhh----h
Q 047123          474 AATDAVLSLLTVRS-NRK----------------------------------ELVRDEKSVMRLMQMLDPKNEAL----N  514 (579)
Q Consensus       474 ~a~~aL~~L~~~~~-~~~----------------------------------~~~~~~~~i~~Lv~lL~~~~~~~----~  514 (579)
                      .|..++.|+...++ ++.                                  ..++.+.||..|++||.-..+.+    +
T Consensus       681 ~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~I  760 (1516)
T KOG1832|consen  681 PALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCI  760 (1516)
T ss_pred             HHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHH
Confidence            99999999976652 221                                  12445789999999997655432    7


Q ss_pred             hHHHHHHHHHHhCCCChhHHHHHH
Q 047123          515 KKFPVMVTAAVLGGGSNGCRKRLV  538 (579)
Q Consensus       515 k~~av~~L~~L~~~~~~~~r~~i~  538 (579)
                      +..|..+|..|+.++.  .|+.|.
T Consensus       761 RalAc~~L~GLaR~~t--VrQIlt  782 (1516)
T KOG1832|consen  761 RALACRVLLGLARDDT--VRQILT  782 (1516)
T ss_pred             HHHHHHHHhccccCcH--HHHHHH
Confidence            7888888999988776  666553

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.42  E-value=0.5  Score=44.87  Aligned_cols=148  Identities=12%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHH
Q 047123          305 QSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS-----SSNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMH  378 (579)
Q Consensus       305 ~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~  378 (579)
                      ..++...|..++++++.|..+.+...---+..+|..     ..+-++-.++++++.|...+ .+.-..+...++++..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            457777788889999999999988766556666643     34679999999999998644 345566778999999999


Q ss_pred             hhccCCCChHHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHH-HHHHHHhcCCHHHHHHHHHHHHHhcCChhhH
Q 047123          379 LIQDSTSSIVTVENALLAISSLSLS--------DSAARILSSTTSFII-QLGEFIKRGNVLLQQVSSSLLGNLSISDGNK  449 (579)
Q Consensus       379 ll~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~-~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~  449 (579)
                      .++.++.  ..+..|..++..+-..        ...+++-.- ...+. .+.++.+.+++.+-....+...+|+.++..|
T Consensus       176 ime~GSe--lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av-~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar  252 (293)
T KOG3036|consen  176 IMESGSE--LSKTVATFILQKILLDDVGLYYICQTAERFSAV-ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR  252 (293)
T ss_pred             HHhcccH--HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            9999986  7888888888877654        111221111 01222 3445556778888899999999999999999


Q ss_pred             HHHHHH
Q 047123          450 RAVASC  455 (579)
Q Consensus       450 ~~i~~~  455 (579)
                      ..+..+
T Consensus       253 ~aL~~c  258 (293)
T KOG3036|consen  253 AALRSC  258 (293)
T ss_pred             HHHHhh
Confidence            888887

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.33  E-value=0.17  Score=45.12  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=98.0

Q ss_pred             HHHHHhcCCHHHHHHHHccCC------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHH
Q 047123          240 RKIVFEEGGLGPLLRILETGS------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGA  311 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~a  311 (579)
                      ...++..||+..|+++++++.      .+....+..++..|-.+....|.......|...+......  +..+...+...
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            356778899999999999986      3667778888888888777789888889999999988864  57889999999


Q ss_pred             HHHhhcChhh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          312 IRNIAAVEDI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       312 L~nLs~~~~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      |-++..+... ...+.++=-++.|+..|+..+++++.+++..+-.|-.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            9999886555 4455566678999999999999999999998888753

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.32  E-value=0.6  Score=47.22  Aligned_cols=187  Identities=18%  Similarity=0.175  Sum_probs=112.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChhhHHH
Q 047123          291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA--EEGAVPVLVQSLTSSSNLAQENAADCIATLAAS--GEYFRLL  366 (579)
Q Consensus       291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~--~~~~r~~  366 (579)
                      ...+..+.+.....|+.++..+.++.........+.  ....++.+.+.++.+...-+..|+.++.-++..  .......
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            344445555667888999988888765333323222  123567777788777766666777777776643  1111233


Q ss_pred             HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHH--HHhc-C---------CH
Q 047123          367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-----DSAARILSSTTSFIIQLGE--FIKR-G---------NV  429 (579)
Q Consensus       367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~--lL~~-~---------~~  429 (579)
                      +.+ ...+.|.+.+.+++.....+..++.+|.-+++.     +.....++    .+..+..  ..+. +         ++
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            333 456788888887765456777888788877764     12221111    1221111  1221 1         24


Q ss_pred             HHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123          430 LLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLL  483 (579)
Q Consensus       430 ~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~  483 (579)
                      .+...|+.+-.-|.  ..+.......+. ++.|..+| ++.+.+||..|.++|.-|.
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            56777776666555  333222244444 99999999 8889999999999988764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.29  E-value=0.6  Score=52.08  Aligned_cols=245  Identities=13%  Similarity=0.058  Sum_probs=153.8

Q ss_pred             CHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHH
Q 047123          260 SMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQS  337 (579)
Q Consensus       260 ~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~l  337 (579)
                      .+..-..+.+++...+.. ..+...+.  -.+...+..+. +..+.++..|+.+++..+...-..  -...++++.|+++
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~--~~~p~ild~L~ql  538 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL--SLQPMILDGLLQL  538 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc--ccchHHHHHHHHH
Confidence            455445677777766532 11211110  01122233222 344556667777666655321111  1134567778888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcH
Q 047123          338 LTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSF  416 (579)
Q Consensus       338 L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~  416 (579)
                      ....+.++.....++|...+..|+. .....+....|..+.++-..+.++.+...+-.++..++.. .+...+.+   ..
T Consensus       539 as~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e---~~  614 (1005)
T KOG2274|consen  539 ASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE---RL  614 (1005)
T ss_pred             cccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH---HH
Confidence            8778889999999999999998876 3444456667777776655554457777777777777776 44455555   48


Q ss_pred             HHHHHHHHhcCC----HHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123          417 IIQLGEFIKRGN----VLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR  489 (579)
Q Consensus       417 i~~L~~lL~~~~----~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~  489 (579)
                      ++.++..+....    ......+...|..+.  ..+..-+.+... .|.+.+..=++++.+.-..+.++|..+.......
T Consensus       615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq  694 (1005)
T KOG2274|consen  615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ  694 (1005)
T ss_pred             HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence            999999997665    667777777777665  333455544444 8888885547888889999999999998765443


Q ss_pred             hHHHhhcccHH------HHHhhcCCCchh
Q 047123          490 KELVRDEKSVM------RLMQMLDPKNEA  512 (579)
Q Consensus       490 ~~~~~~~~~i~------~Lv~lL~~~~~~  512 (579)
                      .....++.|..      .+-+||++...+
T Consensus       695 ~~t~~~e~g~~~~yImqV~sqLLdp~~sd  723 (1005)
T KOG2274|consen  695 LLTWHDEPGHNLWYIMQVLSQLLDPETSD  723 (1005)
T ss_pred             HHhhccCCCccHHHHHHHHHHHcCCccch
Confidence            33333444444      344677777655

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=1.2  Score=50.77  Aligned_cols=254  Identities=13%  Similarity=0.119  Sum_probs=144.2

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENA  281 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~  281 (579)
                      ++++..|+..|+ +.+..++-.|+..++.++...|   ..+ ...++...+.++.-. +...-..++-+|+.|+...-..
T Consensus       340 E~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp---~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLP---PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCc---HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            466778888888 8899999999999999988455   222 233566666655443 4677889999999998421100


Q ss_pred             HHHHhcCcHHHHHHHhcCC--------CHHHHHHHHHHHHHhhcChhh--HHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123          282 WAISAYGGVSVLIEAFRSG--------TALTQSHAVGAIRNIAAVEDI--KAALAEEGAVPVLVQSLTSSSNLAQENAAD  351 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~--------~~~~~~~a~~aL~nLs~~~~~--~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~  351 (579)
                      .... ..+++.++..|..+        ...++..|+++++.++...+.  -+.+.+.=.-..|+..+-+.+-..+..|..
T Consensus       415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            0000 12456666665532        236899999999999773221  111222111122333456667788888888


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH-----Hhc
Q 047123          352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF-----IKR  426 (579)
Q Consensus       352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l-----L~~  426 (579)
                      ++........+.      .-|++.+ ...+..+-  ..+.++-..+   |..      +..-.|...++++-     +.+
T Consensus       494 AlqE~VGR~~n~------p~Gi~Li-s~~dy~sV--~~rsNcy~~l---~~~------ia~~~~y~~~~f~~L~t~Kv~H  555 (1133)
T KOG1943|consen  494 ALQENVGRQGNF------PHGISLI-STIDYFSV--TNRSNCYLDL---CVS------IAEFSGYREPVFNHLLTKKVCH  555 (1133)
T ss_pred             HHHHHhccCCCC------CCchhhh-hhcchhhh--hhhhhHHHHH---hHH------HHhhhhHHHHHHHHHHhccccc
Confidence            877655432221      1122221 11111111  2222222211   111      11011334443333     456


Q ss_pred             CCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          427 GNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       427 ~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      .+..+++.++.+|.+|+ ..++.   +... .++++... .+.+...|..+.-+.+.+..
T Consensus       556 Wd~~irelaa~aL~~Ls~~~pk~---~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  556 WDVKIRELAAYALHKLSLTEPKY---LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHh---hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHH
Confidence            78999999999999998 44432   2222 77777777 67778888766666666543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.11  E-value=0.27  Score=51.13  Aligned_cols=221  Identities=13%  Similarity=0.084  Sum_probs=136.3

Q ss_pred             HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc--CCCccH--------HHHHhcCcHHHH
Q 047123          224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT--TDPENA--------WAISAYGGVSVL  293 (579)
Q Consensus       224 ~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls--~~~~~~--------~~i~~~g~i~~L  293 (579)
                      .|++.|-.+....+..-..+.+.+|+..++..++..-..+.+.  .-..+-.  ..++..        -...+.+.++.|
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l   80 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL   80 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence            4566677666646667778888999999999986532222111  0000000  001111        111222333333


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhc-Ch---hhHHHHHH-cCCHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHH
Q 047123          294 IEAFRSGTALTQSHAVGAIRNIAA-VE---DIKAALAE-EGAVPVLVQSLTSS---SNLAQENAADCIATLAASGEYFRL  365 (579)
Q Consensus       294 v~ll~~~~~~~~~~a~~aL~nLs~-~~---~~~~~l~~-~g~v~~Lv~lL~~~---~~~v~~~a~~~L~~La~~~~~~r~  365 (579)
                      ++++.               .+.. ..   +.-..+.+ ......|...+.+.   .+.+-..++..+..+...+|..-.
T Consensus        81 Lk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   81 LKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             HHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence            33322               2222 11   11222334 33444555556543   467889999999999998988888


Q ss_pred             HHHhcCcHHHHHHhhc-cCC-CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCH-------HHHHHH
Q 047123          366 LIIQERGLQRLMHLIQ-DST-SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNV-------LLQQVS  435 (579)
Q Consensus       366 ~l~~~g~i~~Lv~ll~-~~~-~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~-------~v~~~A  435 (579)
                      .+.+.|.++.+++.+. .+- ++.++....-.+|..||-+ ...+.+.+.  +.+..+++++.+.+.       +.-..-
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~l  223 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNL  223 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence            8999999999999887 443 3456777777889999988 777888888  999999999865433       223333


Q ss_pred             HHHHHHhc-CChhhHHHHHHH----HHHHHHhc
Q 047123          436 SSLLGNLS-ISDGNKRAVASC----MGSLIKLM  463 (579)
Q Consensus       436 ~~aL~~L~-~~~~~~~~i~~~----v~~Lv~lL  463 (579)
                      ...+-.|. ++|..|..+.++    +..+..+-
T Consensus       224 G~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g  256 (379)
T PF06025_consen  224 GNSFDELMRHHPSLKPDIIDAIIKILDRLVELG  256 (379)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566777 889999988888    44444444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.06  E-value=0.29  Score=53.90  Aligned_cols=209  Identities=16%  Similarity=0.099  Sum_probs=140.3

Q ss_pred             hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCCHHHHHHHHccCC-HHHHHHHHHHHH
Q 047123          195 KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS-IIVSANDESRKIVFEEGGLGPLLRILETGS-MPLKEKAAIGVE  272 (579)
Q Consensus       195 ~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~-~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~  272 (579)
                      .-+...++.|+...|+.+.. ...+........+|. .+..  +..+.    ..+++++...+.... ..-...+..++.
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             HhcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            33455678999999999887 666677777777776 3333  11111    134566666655432 112345677888


Q ss_pred             HhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHH-HHH-cCCHHHHHHHhcCCCHHHHHHH
Q 047123          273 AITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAA-LAE-EGAVPVLVQSLTSSSNLAQENA  349 (579)
Q Consensus       273 ~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~-l~~-~g~v~~Lv~lL~~~~~~v~~~a  349 (579)
                      ||+. +...+..+.+.-+++.+-+++..+++..|..+...+.||..++..-.. +++ ....+....++....+.....+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            8886 445677788877777777778888999999999999999998765443 444 4466666666666666777777


Q ss_pred             HHHHHHHhcCChhhHH-HHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhh
Q 047123          350 ADCIATLAASGEYFRL-LIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSS  412 (579)
Q Consensus       350 ~~~L~~La~~~~~~r~-~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~  412 (579)
                      +..+..++..+++.+. ...-......++.++.+.+.  +++......+.|+...  +....+...
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~--~~qhrgl~~~ln~~~~~~ei~~~~~~~  711 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDD--EIQHRGLVIILNLFEALFEIAEKIFET  711 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchh--hhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence            7777767665655555 33335566777888888776  8888888888885544  444444444

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.03  E-value=0.15  Score=56.65  Aligned_cols=142  Identities=18%  Similarity=0.213  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      +..+.++.+....+.|.+.++-.-.-|...++.+|+-...     +++.+.+=++ ++++.+|-.|++.++.+-.  ++.
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~-d~N~~iR~~AlR~ls~l~~--~el  124 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQ-DPNEEIRGFALRTLSLLRV--KEL  124 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhcc-CCCHHHHHHHHHHHHhcCh--HHH
Confidence            4457778888888888888888877888888777633222     3677777778 9999999999999888755  122


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      .     ...++++.+.+.++++.||..|+-++.++=.  -....+.+.|.+..+..++.+.++.+..+|..+|..+-
T Consensus       125 ~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         125 L-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             H-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            2     2358899999999999999999999999863  22345666788888899999999999999999988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.00  E-value=0.85  Score=52.51  Aligned_cols=294  Identities=13%  Similarity=0.085  Sum_probs=160.6

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC----CC-cc
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT----DP-EN  280 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~----~~-~~  280 (579)
                      ++.+..-+..-.....+..|+..|..++. .-.....+  ..++|-++.++.+....||..|..+|..+-.    -+ .+
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~-~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELST-YIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhh-hcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            44444444312246777888888888886 32222222  3568999999999999999999999888652    12 22


Q ss_pred             HHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123          281 AWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS  359 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~  359 (579)
                      ...| ..=..|.|-.++.+ ....++..-+.+|..|+...   -.+.+.+--.....++++.+.+       ...+ ...
T Consensus       501 aniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA---~rFle~~q~~~~~g~~n~~nse-------t~~~-~~~  568 (1431)
T KOG1240|consen  501 ANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA---YRFLELTQELRQAGMLNDPNSE-------TAPE-QNY  568 (1431)
T ss_pred             chhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH---HHHHHHHHHHHhcccccCcccc-------cccc-ccc
Confidence            2222 22345667677766 34455655566666655421   1111111000011112221111       0000 000


Q ss_pred             ChhhHHHHHhcCcHHHHH-HhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123          360 GEYFRLLIIQERGLQRLM-HLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL  438 (579)
Q Consensus       360 ~~~~r~~l~~~g~i~~Lv-~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a  438 (579)
                      +.. ...+  ...++.++ .++.+..+  -++..-+..|.-||..-.+..-   +.-.+..|+.+|+..+..+|-.--.-
T Consensus       569 ~~~-~~~L--~~~V~~~v~sLlsd~~~--~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  569 NTE-LQAL--HHTVEQMVSSLLSDSPP--IVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             chH-HHHH--HHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhh
Confidence            100 1111  11233333 34444333  5666666777777765100000   00356789999999888777655555


Q ss_pred             HHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHH
Q 047123          439 LGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKF  517 (579)
Q Consensus       439 L~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~  517 (579)
                      |.-++..-.- +..-+. +|.|.+-| .+...-|...|.++|..|+...--++..+.  ..+....-+|-.++.- ++..
T Consensus       641 I~gvsi~VG~-rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~W-IR~~  715 (1431)
T KOG1240|consen  641 IVGVSIFVGW-RSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLW-IRRA  715 (1431)
T ss_pred             ccceEEEEee-eeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHH-HHHH
Confidence            5544411111 112233 77777888 555678889999999999887655555552  3455566667777766 8888


Q ss_pred             HHHHHHHHhC
Q 047123          518 PVMVTAAVLG  527 (579)
Q Consensus       518 av~~L~~L~~  527 (579)
                      ++.++...+.
T Consensus       716 ~~~iI~~~~~  725 (1431)
T KOG1240|consen  716 VLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHh
Confidence            8888877664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.99  E-value=0.46  Score=52.97  Aligned_cols=169  Identities=11%  Similarity=0.117  Sum_probs=124.7

Q ss_pred             hccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 047123          171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG  250 (579)
Q Consensus       171 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~  250 (579)
                      +.+++...|.+|+..+...+..++..-.      ..+-+++... +.|.+++.-.--.|...+..+| ....+    ++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-~~~lL----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-ELALL----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-HHHHH----HHH
Confidence            5666777788888777666554433221      2455666666 7788888888778888887444 11111    377


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCC
Q 047123          251 PLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGA  330 (579)
Q Consensus       251 ~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~  330 (579)
                      .+.+=+.++++.+|..|.+++..|-...=      -...++++.+++.++++.++..|+.|+.++-..+  +....+.|.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~  167 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGL  167 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccH
Confidence            78888889999999999999988753211      1235688889999999999999999999986532  233457788


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123          331 VPVLVQSLTSSSNLAQENAADCIATLAAS  359 (579)
Q Consensus       331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~  359 (579)
                      +..+..++.+.++.+...|+.+|..+...
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            88999999999999999999999988653

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.90  E-value=3  Score=46.81  Aligned_cols=178  Identities=12%  Similarity=0.040  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123          259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL  338 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL  338 (579)
                      ..+.++..|+++++.-+... ... -...+++..|.++....+.++......+|+.++..+.-.....+..+.|..+.++
T Consensus       503 ~~~~~ki~a~~~~~~~~~~~-vl~-~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF  580 (1005)
T KOG2274|consen  503 VPPPVKISAVRAFCGYCKVK-VLL-SLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF  580 (1005)
T ss_pred             CCCchhHHHHHHHHhccCce-ecc-ccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence            35567777777777766211 111 1124577788888877777888888888888888666566666777888888776


Q ss_pred             --cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC--ChHHHHHHHHHHHHcccc---hhHHHHHh
Q 047123          339 --TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS--SIVTVENALLAISSLSLS---DSAARILS  411 (579)
Q Consensus       339 --~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~--~~~~~~~A~~aL~~L~~~---~~~~~l~~  411 (579)
                        .+.++.+...+-.++..++....  +..-..+..+|.+++.+.....  .......+...|..+.++   +-.+.++.
T Consensus       581 ~k~s~DP~V~~~~qd~f~el~q~~~--~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~  658 (1005)
T KOG2274|consen  581 LKYSEDPQVASLAQDLFEELLQIAA--NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC  658 (1005)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence              45567777777777666654111  1112235679999999876551  136677777777777766   44555666


Q ss_pred             hcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhc
Q 047123          412 STTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       412 ~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~  443 (579)
                      .   +.+.+.+. +.+++.+.-+++..+|+.+-
T Consensus       659 ~---~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  659 Y---AFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             H---HhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            5   67777766 56777777788888877776

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.90  E-value=0.35  Score=46.88  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh-cChhhHHHHHHcCCHHHHHHHhc
Q 047123          263 LKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIA-AVEDIKAALAEEGAVPVLVQSLT  339 (579)
Q Consensus       263 v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs-~~~~~~~~l~~~g~v~~Lv~lL~  339 (579)
                      ....|.+.|..++ -+|+.+..+.+...+..|+.++. ...+.++.+++.+|..+. .++.|...+-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            4566778888888 58899999999999999999995 467888999998886654 58899999999999999999997


Q ss_pred             CC--CHHHHHHHHHHHHHHhc
Q 047123          340 SS--SNLAQENAADCIATLAA  358 (579)
Q Consensus       340 ~~--~~~v~~~a~~~L~~La~  358 (579)
                      +.  +.+++-++++.|.-...
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHc
Confidence            65  55788888888776544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.88  E-value=0.12  Score=42.32  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccC
Q 047123          390 VENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMEC  465 (579)
Q Consensus       390 ~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~  465 (579)
                      |..+..+|...+..  ......++.   +++.++..+.+.+..||..|+.+|.|++  ..++.-..|.+-.+.|.+++ .
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~---Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~-~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE---ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS-A   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH---HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence            34455566666555  344555554   8999999999999999999999999999  33444444555488999999 6


Q ss_pred             CCCHhHHHHHHHHHHHhh
Q 047123          466 PKPVGLQEAATDAVLSLL  483 (579)
Q Consensus       466 ~~~~~v~~~a~~aL~~L~  483 (579)
                      +.+..||..| +.|-+|.
T Consensus        79 D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CCchhHHHHH-HHHHHHh
Confidence            6677777665 5555543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.71  Score=50.77  Aligned_cols=124  Identities=16%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH
Q 047123          344 LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF  423 (579)
Q Consensus       344 ~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l  423 (579)
                      +-+...+.++..+...+++.|     +.++..|..++.++.    ....+.+.|.-|... ........  ..+..+.+.
T Consensus       407 e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce----~~~i~~rILhlLG~E-gP~a~~Ps--kyir~iyNR  474 (865)
T KOG1078|consen  407 EFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE----FTQIAVRILHLLGKE-GPKAPNPS--KYIRFIYNR  474 (865)
T ss_pred             hHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc----chHHHHHHHHHHhcc-CCCCCCcc--hhhHHHhhh
Confidence            445555555555554444322     334555555555542    344455555555443 00001111  345555555


Q ss_pred             HhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123          424 IKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLL  483 (579)
Q Consensus       424 L~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~  483 (579)
                      .--.+..++..|..+|.++. .++..+..+   .-.|.+.+ .+.+.++|+.|..+|.++-
T Consensus       475 viLEn~ivRaaAv~alaKfg~~~~~l~~sI---~vllkRc~-~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  475 VILENAIVRAAAVSALAKFGAQDVVLLPSI---LVLLKRCL-NDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcCCCCccccH---HHHHHHHh-cCchHHHHHHHHHHHHHhh
Confidence            55567788889999999998 454444332   22445567 7778999999999999886

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.71  E-value=0.94  Score=46.93  Aligned_cols=269  Identities=18%  Similarity=0.266  Sum_probs=144.8

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHH-hcCCCccHHH
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEA-ITTDPENAWA  283 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~-Ls~~~~~~~~  283 (579)
                      |..++.=+..+....+|..++--|+.-+. +++.+..+...|....+++.+... +..+-..++.++.. ++.+..+-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            45555544413446788888888888889 999999999999999999999543 33355555445544 4444444445


Q ss_pred             HHhcCcHHHHHHHhcCC---C--HHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc---------CCCHHHHHHH
Q 047123          284 ISAYGGVSVLIEAFRSG---T--ALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT---------SSSNLAQENA  349 (579)
Q Consensus       284 i~~~g~i~~Lv~ll~~~---~--~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a  349 (579)
                      +.+.+....++.++...   +  ......-.   .+++..        .++.+..+...+.         .....-+..+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~--------~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la  170 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKV--------QQKSRSLCKELLSSGSSWKSPKPPELSPQTLA  170 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhhhhh---hhhhHH--------HHHHHHHHHHHHhccccccccCCcccccccHH
Confidence            44555666667777611   0  00000000   011110        0011111111110         0111233344


Q ss_pred             HHHHHHHh--------------cCChhhHHHHHhcCcHHHHHHhhcc----CC-----C-----ChHHHHHHHHHHHHcc
Q 047123          350 ADCIATLA--------------ASGEYFRLLIIQERGLQRLMHLIQD----ST-----S-----SIVTVENALLAISSLS  401 (579)
Q Consensus       350 ~~~L~~La--------------~~~~~~r~~l~~~g~i~~Lv~ll~~----~~-----~-----~~~~~~~A~~aL~~L~  401 (579)
                      ..+|..++              ...+.+++.+.+.|+++.++..+..    ..     .     +...-..+.++|-+.+
T Consensus       171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T  250 (361)
T PF07814_consen  171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT  250 (361)
T ss_pred             HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence            44444442              1233467888889999999998752    11     0     1123445667777766


Q ss_pred             cc--hhHHHHHhhcCcHHHHH-HHHHh---cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----H----HHHHHhc--
Q 047123          402 LS--DSAARILSSTTSFIIQL-GEFIK---RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----M----GSLIKLM--  463 (579)
Q Consensus       402 ~~--~~~~~l~~~~~g~i~~L-~~lL~---~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v----~~Lv~lL--  463 (579)
                      ..  ++...++....+.+..+ ..++.   ......+..+.+.+.|++ .+++..+.+...     .    ..+..++  
T Consensus       251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~  330 (361)
T PF07814_consen  251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSL  330 (361)
T ss_pred             hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccc
Confidence            55  45555555433333332 22222   223344678889999999 776776666655     1    1111111  


Q ss_pred             ----cCCCCHhHHHHHHHHHHHhhcCC
Q 047123          464 ----ECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       464 ----~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                          ...+..+...-+..+|.||+-.+
T Consensus       331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  331 PNYVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccccccchHHHHHHHhHHHheeeC
Confidence                12234566677777777777543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.66  E-value=0.04  Score=46.58  Aligned_cols=72  Identities=14%  Similarity=0.274  Sum_probs=62.1

Q ss_pred             HHHHHHHHHh-ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          162 LFIRDIFTRL-QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       162 ~~v~~Lv~~L-~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      ..+..|+.+| .+.|+....-|+.-|+.+++..|..+..+-+.|+=..+++|+. ++|++++..|+.++..+-.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            3688999999 4557888889999999999999999999989999999999999 9999999999999987654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.65  E-value=0.096  Score=48.75  Aligned_cols=120  Identities=11%  Similarity=0.102  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHhc----------------CcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 047123          261 MPLKEKAAIGVEAITTDPENAWAISAY----------------GGVSVLIEAFRS------GTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~----------------g~i~~Lv~ll~~------~~~~~~~~a~~aL~nLs~~  318 (579)
                      ......++..|+||+..++.+..+.+.                ..+..|+..+..      ....-..+.+.++.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            345567788899999877766655442                256677775544      2235578889999999999


Q ss_pred             hhhHHHHHHc--CC--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHhhc
Q 047123          319 EDIKAALAEE--GA--VPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE---RGLQRLMHLIQ  381 (579)
Q Consensus       319 ~~~~~~l~~~--g~--v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~---g~i~~Lv~ll~  381 (579)
                      ++.|..+.+.  +.  +..|+.++.+.+..-+..++.+|.|+|.+.+. ...+...   +.++.|+--+.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~-H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS-HEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH-HHHhcCchhhhhHHHHHhhcc
Confidence            9999999843  34  67777777888888899999999999986654 4555553   44555544443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.58  E-value=0.79  Score=42.31  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCC-HHHHH
Q 047123          175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGG-LGPLL  253 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~-l~~Lv  253 (579)
                      ++.+|..++.++++++..-+...     +..++.+...|. ++++.+|..|+.+|..|.. .+-.+    -.|- +..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~-D~~~~VR~~al~~Ls~Li~-~d~ik----~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLR-DEDPLVRKTALLVLSHLIL-EDMIK----VKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH-cCcee----ehhhhhHHHH
Confidence            56789999999999987665443     345889999999 9999999999999999887 32111    1233 47888


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCC
Q 047123          254 RILETGSMPLKEKAAIGVEAITTD  277 (579)
Q Consensus       254 ~lL~~~~~~v~~~aa~~L~~Ls~~  277 (579)
                      ..+.+.+++++..|..++..+...
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999854

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=7  Score=45.36  Aligned_cols=221  Identities=14%  Similarity=0.145  Sum_probs=132.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Ch-hhHHHHHHcCCHHHH
Q 047123          259 GSMPLKEKAAIGVEAITTDPENAWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VE-DIKAALAEEGAVPVL  334 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~-~~~~~l~~~g~v~~L  334 (579)
                      .+..+|..+-++|..++..+.......++  .+-..|..-.++.....+...+.+|..|-. .+ +....+ .. .|+.+
T Consensus       666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k-~I~Ev  743 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PK-LIPEV  743 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HH-HHHHH
Confidence            37889999999999999875554444332  244555556666666778888888877754 22 222222 22 34444


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHH
Q 047123          335 VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE---RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARIL  410 (579)
Q Consensus       335 v~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~---g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~  410 (579)
                      +-.++..+...+..+..||..++..  .......++   ..++..+..+..+--.+..+..+.. |..+..- .....++
T Consensus       744 IL~~Ke~n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~l  820 (1176)
T KOG1248|consen  744 ILSLKEVNVKARRNAFALLVFIGAI--QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNIL  820 (1176)
T ss_pred             HHhcccccHHHHhhHHHHHHHHHHH--HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccc
Confidence            4445777888999999999988730  001111111   1455555555444211123333332 3333221 1111222


Q ss_pred             hh--cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          411 SS--TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       411 ~~--~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ..  -.+.+..+..+|.++++++...|...+..++  .....-....+. ++.+..++ +.....++...-..|-.|.+.
T Consensus       821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Confidence            22  0045666666788999999999999999998  444555566666 88888988 666677777777777777654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=2.1  Score=46.93  Aligned_cols=205  Identities=15%  Similarity=0.113  Sum_probs=119.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH
Q 047123          330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI  409 (579)
Q Consensus       330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l  409 (579)
                      +=+.+-+++.+.++-+|...+.+++.-=.+.       .+.+++..|+++--++.. ++++..|+-+|.-++..+     
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~n-DDVrRaAVialGFVl~~d-----  586 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVN-DDVRRAAVIALGFVLFRD-----  586 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccc-hHHHHHHHHHheeeEecC-----
Confidence            3344445666777777776665554311111       125678888887433332 489999999999988871     


Q ss_pred             HhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123          410 LSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN  488 (579)
Q Consensus       410 ~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~  488 (579)
                          +...+..+.+| ++.++-||..++++|.--|....++.+    +..|-.|. .+...-||..|+-++.-+......
T Consensus       587 ----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA----i~lLepl~-~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  587 ----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA----INLLEPLT-SDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             ----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH----HHHHhhhh-cChHHHHHHHHHHHHHHHHHhccc
Confidence                13444555555 577999999999999988866555543    55555566 555677899998888887643211


Q ss_pred             -hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh-ccCCchHHHHHHHHhc
Q 047123          489 -RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA-ETEVPGAKKVLQRLAG  566 (579)
Q Consensus       489 -~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~-~~~~~~ak~~~~~l~~  566 (579)
                       ..--+  .+....+.+...+..++...++-+.            ..+-|.++|+-..-+.|- .++..+...++--+-.
T Consensus       658 ~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAi------------lAqGildaGGrNvtislqs~tg~~~~~~vvGl~~F  723 (929)
T KOG2062|consen  658 QLCPKV--NGFRKQLEKVINDKHEDGMAKFGAI------------LAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVF  723 (929)
T ss_pred             ccCchH--HHHHHHHHHHhhhhhhHHHHHHHHH------------HHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHH
Confidence             00011  2233456666666555432222211            123344555544444443 3345566666655544


Q ss_pred             Ccch
Q 047123          567 NRLK  570 (579)
Q Consensus       567 ~~~~  570 (579)
                      .++|
T Consensus       724 lq~W  727 (929)
T KOG2062|consen  724 LQYW  727 (929)
T ss_pred             HHHH
Confidence            4444

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.28  E-value=2.9  Score=39.95  Aligned_cols=179  Identities=14%  Similarity=0.100  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHH
Q 047123          263 LKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-----GTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLV  335 (579)
Q Consensus       263 v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv  335 (579)
                      -..++...|.-++.+++.+..|.+...=-.|-.++..     ..+-++-.+++++..|..+  .+.-..+...++||.++
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3457777888899999999999998765555555543     3446889999999999874  44566777899999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHh----cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHH
Q 047123          336 QSLTSSSNLAQENAADCIATLAASGEYF---RLLIIQ----ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR  408 (579)
Q Consensus       336 ~lL~~~~~~v~~~a~~~L~~La~~~~~~---r~~l~~----~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~  408 (579)
                      +.+..|++..+..|...+..+-.+|...   ++..-+    ...+..++..+-+ .++..+..+++++..+|+.++....
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999988766442   111111    1223333333322 2235899999999999998844333


Q ss_pred             HHhh-cCcHHH--HHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          409 ILSS-TTSFII--QLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       409 l~~~-~~g~i~--~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      .+.. .++.+.  .+..++ ..|+..+..-...+.|++
T Consensus       254 aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~  290 (293)
T KOG3036|consen  254 ALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC  290 (293)
T ss_pred             HHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence            3332 111111  122222 245555555555565554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.26  E-value=0.31  Score=47.25  Aligned_cols=100  Identities=10%  Similarity=0.086  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 047123          303 LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI  380 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll  380 (579)
                      .....|+.+|.-++- ++..+..+.++..+..++.++. ...+.++..++.+|..+..+++.+.+.+-+.+|+..+..++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            345567778877766 8899999999999999999994 45788999999999999888888888888999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHHccc
Q 047123          381 QDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       381 ~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      ++.+.+.+++-.++..|+-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            9987655677666666654443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.16  E-value=0.7  Score=46.55  Aligned_cols=169  Identities=14%  Similarity=0.069  Sum_probs=106.7

Q ss_pred             HHHHHHH-HHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh-hh
Q 047123          162 LFIRDIF-TRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND-ES  239 (579)
Q Consensus       162 ~~v~~Lv-~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~-~~  239 (579)
                      ..+..+| ..+++.++.+|..|+.+|+-.|--+.+..     ...++.+...++ .++..++..|++++..+...+. +.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4566666 77889999999999999999987665432     234777888887 7799999999999997765221 11


Q ss_pred             HHH-------HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC----CCHHHHHHH
Q 047123          240 RKI-------VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS----GTALTQSHA  308 (579)
Q Consensus       240 ~~~-------i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a  308 (579)
                      ...       ......+..+.+.+++.+++++..++..+++|-.......   ....+..|+-+--+    ++..++..-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            111       2224567788889999999999999999999874332211   12233444332211    233444444


Q ss_pred             HHHHHHhhcChhhHHHHHHcCCHHHHHHHhc
Q 047123          309 VGAIRNIAAVEDIKAALAEEGAVPVLVQSLT  339 (579)
Q Consensus       309 ~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~  339 (579)
                      ...+-..+......+....+..++.+-.+.+
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4444455553333334444556666655553

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.14  E-value=0.22  Score=46.38  Aligned_cols=121  Identities=15%  Similarity=0.124  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcccc-hhHHHHHhhcC--------------cHHHHHHHHHhc------CCHHHHHHHHHHHHHhcCCh
Q 047123          388 VTVENALLAISSLSLS-DSAARILSSTT--------------SFIIQLGEFIKR------GNVLLQQVSSSLLGNLSISD  446 (579)
Q Consensus       388 ~~~~~A~~aL~~L~~~-~~~~~l~~~~~--------------g~i~~L~~lL~~------~~~~v~~~A~~aL~~L~~~~  446 (579)
                      .....++..|.||+.. ..+..++....              ..+..|+.++..      ...+-....+.++.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            5677788899999987 44443443322              367788888765      22344577889999999999


Q ss_pred             hhHHHHHHH------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhc--ccHHHHHhhcCCC
Q 047123          447 GNKRAVASC------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDE--KSVMRLMQMLDPK  509 (579)
Q Consensus       447 ~~~~~i~~~------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~--~~i~~Lv~lL~~~  509 (579)
                      +.|+.|.+.      +..|+.++ ...+..-|..++.+|.|++-.......+..++  +.++.|+--|..+
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence            999999886      56677777 55577778899999999998888777777643  4556655555433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.03  E-value=5.5  Score=44.99  Aligned_cols=156  Identities=11%  Similarity=0.095  Sum_probs=106.8

Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHH--HHHHHHhcCC
Q 047123          352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFII--QLGEFIKRGN  428 (579)
Q Consensus       352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~--~L~~lL~~~~  428 (579)
                      +|++.+...+..+..+.+.|+...+...++.-. ....+..+.+.+.|++.. +........  ..+.  .+-.++...+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~-~~~~~~~il~~l~n~~~~~~~~~~~~~~--~~~~~~~f~~~~~~w~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD-NEELHRKILGLLGNLAEVLELRELLMIF--EFIDFSVFKVLLNKWD  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHhhcc
Confidence            888999888889999999999999999998774 358999999999999987 222221111  1222  3333444444


Q ss_pred             H-HHHHHHHHHHHHhcCC----------hhhHHHHHHH----------------HHH-HHHhccCCCCHhHHHHHHHHHH
Q 047123          429 V-LLQQVSSSLLGNLSIS----------DGNKRAVASC----------------MGS-LIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       429 ~-~v~~~A~~aL~~L~~~----------~~~~~~i~~~----------------v~~-Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      . +.-..++..|..+..+          +...+.+.++                +.+ +.+++..++.+..+..|..++.
T Consensus       571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~  650 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK  650 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence            4 6667777777777622          1122222322                333 6666767778888999999999


Q ss_pred             HhhcCCcchhHHHhhcccHHHHHhhcCCCc
Q 047123          481 SLLTVRSNRKELVRDEKSVMRLMQMLDPKN  510 (579)
Q Consensus       481 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  510 (579)
                      ++....+.....+.+.+++..+.+.-....
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (699)
T KOG3665|consen  651 NVLEQNKEYCKLVRESNGFELIENIRVLSE  680 (699)
T ss_pred             HHHHcChhhhhhhHhccchhhhhhcchhHH
Confidence            999877667777767888777766554433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.02  E-value=1  Score=45.33  Aligned_cols=170  Identities=15%  Similarity=0.095  Sum_probs=112.7

Q ss_pred             cHHHHH-HhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccH
Q 047123          205 NVGYLI-SLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENA  281 (579)
Q Consensus       205 ~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~  281 (579)
                      .+..|+ .-++ +.++.+|+.|+++|+..+--+.+...     ..++.+.+.++.++..++..|..++..+..  ..+..
T Consensus        27 ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   27 LLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            344444 3556 88999999999999999873332222     227778888888899999999999998872  21211


Q ss_pred             H-------HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-c---CCCHHHHHHHH
Q 047123          282 W-------AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-T---SSSNLAQENAA  350 (579)
Q Consensus       282 ~-------~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~---~~~~~v~~~a~  350 (579)
                      .       .......+..+.+.+.+.+++++..++..++.|-.......   ...++..|+-.. +   ..+..++..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            1       12234577888889999999999999999998865332221   112333443333 2   23456777777


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC
Q 047123          351 DCIATLAASGEYFRLLIIQERGLQRLMHLIQDST  384 (579)
Q Consensus       351 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~  384 (579)
                      ..+-..+...+.. +.......++.+..++....
T Consensus       178 ~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  178 VFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence            7777788777653 45556677777777666543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=94.92  E-value=2.2  Score=44.47  Aligned_cols=187  Identities=11%  Similarity=0.130  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      .+|..++.-+... ..+.+..|+..|..+..++...+=.=.-...+..+++.|..+.+...+..|+++|..++.   ...
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~---~Q~  362 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT---NQP  362 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH---hch
Confidence            3577777777654 667888999888877665521110001112345667777723778899999999999998   333


Q ss_pred             HHHHhc--CCHHHHHHHHccCCHHHHHHHHHH-HHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          241 KIVFEE--GGLGPLLRILETGSMPLKEKAAIG-VEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       241 ~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      ..+++.  -++..+++.-++...++...|... +.-++...+.+       .|..+..++...|...-..++..+..+..
T Consensus       363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e  435 (516)
T KOG2956|consen  363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFE  435 (516)
T ss_pred             HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence            444432  245566666666666655555544 44455433222       12333444444555444455555666554


Q ss_pred             ChhhHH-HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          318 VEDIKA-ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       318 ~~~~~~-~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      .-..-. ...-....|.+++..++.+..+|..++.||..+..
T Consensus       436 ~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  436 RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            211111 11123478888888999999999999999987753

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.92  E-value=0.46  Score=42.84  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhH
Q 047123          331 VPVLVQSLT--SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSA  406 (579)
Q Consensus       331 v~~Lv~lL~--~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~  406 (579)
                      ++.++..+.  ..+++++..+.-++..+-   +..+.. ..+-+-+.+-..+.....  +....+..++..+-..  +..
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~--d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEM--DSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHC--CHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccc--hhHHHHHHHHHHHhCCCHHHH
Confidence            445555554  356678888888888773   222222 222223333334444443  4566677777766555  334


Q ss_pred             HH-HHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHh-HHHHHHHHHHH
Q 047123          407 AR-ILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVG-LQEAATDAVLS  481 (579)
Q Consensus       407 ~~-l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~-v~~~a~~aL~~  481 (579)
                      .. +...  |+++.+..+..  ..+..++..++.+|..-|.+...|..+.+. ++.|-++++.+++.. +|..|+-+|+.
T Consensus        79 ~~l~~~e--g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSE--GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTT--THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhh--hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            44 3355  89999999998  788899999999999888999999999998 999999996666666 88888887765


Q ss_pred             h
Q 047123          482 L  482 (579)
Q Consensus       482 L  482 (579)
                      |
T Consensus       157 l  157 (157)
T PF11701_consen  157 L  157 (157)
T ss_dssp             C
T ss_pred             C
Confidence            4

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.79  E-value=0.49  Score=45.68  Aligned_cols=146  Identities=17%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-----HHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHH
Q 047123          180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-----SSIREQAVLALSIIVSA-NDESRKIVFEEGGLGPLL  253 (579)
Q Consensus       180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-----~~~~~~A~~aL~~La~~-~~~~~~~i~~~g~l~~Lv  253 (579)
                      ..|+.-|..+++ +|+.+..+.+....-.|.-+|+ ..+     ...|..++.+++.+... +++.-..+.....+|..+
T Consensus        68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~-tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLN-TTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH-----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhh-ccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            456666666665 7888999998887777777776 432     56788899999988862 445667778889999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCCCccHH-------HHHh-cCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123          254 RILETGSMPLKEKAAIGVEAITTDPENAW-------AISA-YGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVEDIKAA  324 (579)
Q Consensus       254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~-------~i~~-~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~~~~~~  324 (579)
                      +.++.|+.-.+..|..++.++-.++..-.       .|.. ..++..++. +....++.+.++.++|-..|+.++..+..
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999876554322       2222 224444444 44567889999999999999999998887


Q ss_pred             HHH
Q 047123          325 LAE  327 (579)
Q Consensus       325 l~~  327 (579)
                      +..
T Consensus       226 L~~  228 (262)
T PF04078_consen  226 LRQ  228 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.78  E-value=0.26  Score=56.34  Aligned_cols=131  Identities=17%  Similarity=0.131  Sum_probs=105.2

Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123          416 FIIQLGEFIK----RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR  489 (579)
Q Consensus       416 ~i~~L~~lL~----~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~  489 (579)
                      +.+.+++..+    .++|++|..|.-+|+.+. .+.+    |.+. ++.|+.++++++++.+|-++.-+++.|+-..+|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            6667777773    457899999999999998 4444    4444 9999999988999999999999999999888876


Q ss_pred             hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHH
Q 047123          490 KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQ  562 (579)
Q Consensus       490 ~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~  562 (579)
                      ..-..     +.|...|.+.++. +++.++-++..|-..      .+|.-.|.+......+..+++..+.+.+
T Consensus       996 ie~~T-----~~Ly~rL~D~~~~-vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  996 IEPWT-----EHLYRRLRDESPS-VRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             cchhh-----HHHHHHhcCccHH-HHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence            65443     6788888888877 899999999998654      3445588999999999999887665555

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.74  E-value=6  Score=45.08  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=109.4

Q ss_pred             hcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----CCC----HHHHHHHHHH
Q 047123          245 EEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----SGT----ALTQSHAVGA  311 (579)
Q Consensus       245 ~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----~~~----~~~~~~a~~a  311 (579)
                      +.||+..++..+.+-     ..+.-......|...+.-+.|+..+.+.|+++.|++.+.    .+.    ..+-+....+
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            368899999999763     345566677777777788899999999999999998774    333    4555555555


Q ss_pred             HHHhhcChh---hHH--HHHHcC--------CHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123          312 IRNIAAVED---IKA--ALAEEG--------AVPVLVQSLTSS----SNLAQENAADCIATLAASGEYFRLLIIQERGLQ  374 (579)
Q Consensus       312 L~nLs~~~~---~~~--~l~~~g--------~v~~Lv~lL~~~----~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~  374 (579)
                      +-.+.....   ...  ......        -|..+++.+.+.    ++.+....++.|-.|+.+++...+.+++.=  .
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--K  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--H
Confidence            544432111   110  001111        255566666543    678999999999999998876544443310  1


Q ss_pred             HHHHh--hccCCCChHHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123          375 RLMHL--IQDSTSSIVTVENALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRGNVLL  431 (579)
Q Consensus       375 ~Lv~l--l~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~~~~v  431 (579)
                      ..+++  ++.... .+. ...+..+..++..        .-++.+++.  |++...+++|...-+..
T Consensus       273 p~l~f~~~D~~~~-~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~--GIv~~a~~YL~~~~P~~  335 (802)
T PF13764_consen  273 PYLDFDKFDEEHS-PDE-QFKLECFCEIAEGIPNNSNGNRLKDKILES--GIVQDAIDYLLKHFPSL  335 (802)
T ss_pred             HhcChhhcccccC-chH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHh--hHHHHHHHHHHHhCccc
Confidence            11111  111111 111 2234445555443        346678888  99998998887665544

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.67  E-value=7.1  Score=42.38  Aligned_cols=175  Identities=14%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHH
Q 047123          259 GSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQ  336 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~  336 (579)
                      ++...+..|+..+..... .|+....     ++..++.+|.+++..+|..|+..|-.+|.+ ++....+     +.+|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence            578889999999988774 5554432     569999999999999999999999999984 4554444     568999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---cCCCChHHHHHHHHHHHHcccc---hhHH--H
Q 047123          337 SLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ---DSTSSIVTVENALLAISSLSLS---DSAA--R  408 (579)
Q Consensus       337 lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~---~~~~~~~~~~~A~~aL~~L~~~---~~~~--~  408 (579)
                      +|.++++.-...+-.+|..+-..++.        +.+..+...+.   .++  +.+++.+...|..=...   +...  .
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~d--e~~Re~~lkFl~~kl~~l~~~~~~p~~  173 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGD--EQVRERALKFLREKLKPLKPELLTPQK  173 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS---HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence            99988877667777777776655542        34555555444   333  47888888777533322   1111  2


Q ss_pred             HHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----ChhhHHHHHHH
Q 047123          409 ILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-----SDGNKRAVASC  455 (579)
Q Consensus       409 l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~-----~~~~~~~i~~~  455 (579)
                      -++.  -++..+-++|.+-..+--.....+|..+..     ..+.++.+.+.
T Consensus       174 E~e~--~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~i  223 (556)
T PF05918_consen  174 EMEE--FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDI  223 (556)
T ss_dssp             HHHH--HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHH
Confidence            2222  244555666665444333444455555553     34445555554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.66  E-value=0.3  Score=40.00  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHHH
Q 047123          179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE--EGGLGPLLRIL  256 (579)
Q Consensus       179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~--~g~l~~Lv~lL  256 (579)
                      |..++.+|...+..-+..... .-...+++++..+. +++..+|..|+++|.+++.   ..+..+..  ...++.|.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~-~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k---~~~~~~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISK-YLDEILPPVLKCFD-DQDSRVRYYACEALYNISK---VARGEILPYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHH-HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            445566666665433333111 13456899999999 9999999999999999998   34444432  35788888998


Q ss_pred             ccCCHHHHHHHHHHHHHh
Q 047123          257 ETGSMPLKEKAAIGVEAI  274 (579)
Q Consensus       257 ~~~~~~v~~~aa~~L~~L  274 (579)
                      .+.++.|+..| ..|-+|
T Consensus        78 ~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   78 ADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             cCCchhHHHHH-HHHHHH
Confidence            88888887766 444443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.56  E-value=0.077  Score=44.88  Aligned_cols=70  Identities=11%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      +..|+++|+.+.++.+...||.=|+.+++..++.+.++.+.|+-..++++|.+++++ ++..|+-++..+.
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~e-Vr~eAL~avQklm  114 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPE-VRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence            889999996666788888899999999999999999998888889999999999888 8888888777664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.33  E-value=3.3  Score=42.93  Aligned_cols=242  Identities=13%  Similarity=0.128  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCH-HHHHHHHHHHHHhhccCh
Q 047123          160 LVLFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQS-SIREQAVLALSIIVSAND  237 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~-~~~~~A~~aL~~La~~~~  237 (579)
                      ....|..++..|..+ ....|..++..|..-|. ++..+..+..+|.+..+++.+...++. ...-.++.++..++. +.
T Consensus        19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~   96 (361)
T PF07814_consen   19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DG   96 (361)
T ss_pred             HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CC
Confidence            344577788888744 45678888888888885 778999999999999999988414443 333333444445555 44


Q ss_pred             hhHHHHHhcCCHHHHHHHHcc--C------------------------------------------CHHHHHHHHHHHHH
Q 047123          238 ESRKIVFEEGGLGPLLRILET--G------------------------------------------SMPLKEKAAIGVEA  273 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~~--~------------------------------------------~~~v~~~aa~~L~~  273 (579)
                      .+-..+.+.+....++++++.  .                                          ....+.-|..++..
T Consensus        97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~  176 (361)
T PF07814_consen   97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALES  176 (361)
T ss_pred             cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHH
Confidence            444444444444444565550  0                                          00112233333444


Q ss_pred             hc---------------CCCccHHHHHhcCcHHHHHHHhcC----CC-------H-----HHHHHHHHHHHHhhc-Chhh
Q 047123          274 IT---------------TDPENAWAISAYGGVSVLIEAFRS----GT-------A-----LTQSHAVGAIRNIAA-VEDI  321 (579)
Q Consensus       274 Ls---------------~~~~~~~~i~~~g~i~~Lv~ll~~----~~-------~-----~~~~~a~~aL~nLs~-~~~~  321 (579)
                      ++               ..+..++.+...||+..++..+.+    .+       +     .....+..+|-|.+. ++++
T Consensus       177 l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~n  256 (361)
T PF07814_consen  177 LVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEEN  256 (361)
T ss_pred             HHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            41               011234556667788999988751    11       1     234556666666665 5666


Q ss_pred             HHHHHHc--CCHHHHHHH-h---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-------hhcc-----C
Q 047123          322 KAALAEE--GAVPVLVQS-L---TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH-------LIQD-----S  383 (579)
Q Consensus       322 ~~~l~~~--g~v~~Lv~l-L---~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~-------ll~~-----~  383 (579)
                      +......  +.++.+... +   ..........+++.+.|++..++..+..+...+....+..       ++..     .
T Consensus       257 q~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~  336 (361)
T PF07814_consen  257 QSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPE  336 (361)
T ss_pred             hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccc
Confidence            6666532  233332222 2   2223455788999999999988776666665433322211       1110     0


Q ss_pred             CCChHHHHHHHHHHHHcccc
Q 047123          384 TSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       384 ~~~~~~~~~A~~aL~~L~~~  403 (579)
                      ...-+....+.+++-||+..
T Consensus       337 ~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  337 ESSFDILILALGLLINLVEH  356 (361)
T ss_pred             cccchHHHHHHHhHHHheee
Confidence            11235666777777777765

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.30  E-value=1.2  Score=47.17  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=107.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCH----HHHHHHHHHHHHhhcChhhHHH
Q 047123          249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTA----LTQSHAVGAIRNIAAVEDIKAA  324 (579)
Q Consensus       249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~----~~~~~a~~aL~nLs~~~~~~~~  324 (579)
                      ...+.+++.++++..+..+...|..++.++.....++...++..|..++.+++.    .+....+.++..+-.+.-..=.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            445677888888888888999999999999999999999999999999998765    3444444444433221100000


Q ss_pred             HHHcCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          325 LAEEGAVPVLVQSL--TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       325 l~~~g~v~~Lv~lL--~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      .+...+|.....+.  +..+..+...|+..|-++...+...+..+.++--++.|+..++..+.  .++..|...+..+-.
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~--~i~~~aial~nal~~  242 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ--RIQTCAIALLNALFR  242 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch--HHHHHHHHHHHHHHh
Confidence            01111233333333  22345678889999999988777778888889999999999998886  677777777777665


Q ss_pred             c
Q 047123          403 S  403 (579)
Q Consensus       403 ~  403 (579)
                      .
T Consensus       243 ~  243 (713)
T KOG2999|consen  243 K  243 (713)
T ss_pred             h
Confidence            4

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=2.6  Score=47.03  Aligned_cols=215  Identities=12%  Similarity=0.129  Sum_probs=133.0

Q ss_pred             HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHH
Q 047123          255 ILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVL  334 (579)
Q Consensus       255 lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~L  334 (579)
                      .+.++-..++..+...|..+...-+.+..+...+++...+..+++.|+-+--+|+..+..||..       ..+..+|.+
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL  807 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL  807 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence            3344456678889999999987667777888899999999999999998888888877777652       345567777


Q ss_pred             HHHhcC-C---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h-hHHH
Q 047123          335 VQSLTS-S---SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D-SAAR  408 (579)
Q Consensus       335 v~lL~~-~---~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~-~~~~  408 (579)
                      .....+ .   .++.+-.+-+++.++...-.+...... .-.+...+...++.  +...|..++..+++||.. . ....
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            774422 1   134445555666666542211111111 12334444444533  236788999999999875 1 1111


Q ss_pred             HHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCh--hhHH----HHHHHHHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123          409 ILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSISD--GNKR----AVASCMGSLIKLMECPKPVGLQEAATDAVLS  481 (579)
Q Consensus       409 l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~~--~~~~----~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~  481 (579)
                      .+.   .++..++.+.. ++..-+|+.|+..+..+-.+.  +.-.    ...+....+....+..++..++..++.++-.
T Consensus       885 ~~~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  885 FFH---EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             HHH---HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            222   24445555544 456788999999998887322  2221    2222255555566566667777777777665


Q ss_pred             h
Q 047123          482 L  482 (579)
Q Consensus       482 L  482 (579)
                      +
T Consensus       962 i  962 (982)
T KOG4653|consen  962 I  962 (982)
T ss_pred             H
Confidence            5

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=94.03  E-value=1.1  Score=50.37  Aligned_cols=147  Identities=16%  Similarity=0.097  Sum_probs=104.1

Q ss_pred             cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhh
Q 047123          370 ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGN  448 (579)
Q Consensus       370 ~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~  448 (579)
                      ...+|.+++.+.+.+.  ..+-+-..+|.++-.+--...+...-+..++.|++.|...+..+|..+...+.-+. .++..
T Consensus       866 ~~ivP~l~~~~~t~~~--~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPG--SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HhhHHHHHHHhccCCc--cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            3467889888885554  56777777777777662223333333357888899999999999999999888887 66666


Q ss_pred             HHHHHHH-HHHHHHhccCCCC--HhHHHHHHHHHHHhhc-CCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHH
Q 047123          449 KRAVASC-MGSLIKLMECPKP--VGLQEAATDAVLSLLT-VRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVM  520 (579)
Q Consensus       449 ~~~i~~~-v~~Lv~lL~~~~~--~~v~~~a~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~  520 (579)
                      ...-... +|.++.+-.+.++  ..+|+.|.++|..|.+ .+.++-.-.+ ...+..|...|+++.-- +++.|+.
T Consensus       944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRl-VR~eAv~ 1017 (1030)
T KOG1967|consen  944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRL-VRKEAVD 1017 (1030)
T ss_pred             chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHH-HHHHHHH
Confidence            6655555 8888888744443  7899999999999998 4444433333 56678888888866433 6666665

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.88  E-value=2.2  Score=45.25  Aligned_cols=151  Identities=16%  Similarity=0.189  Sum_probs=113.9

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCH----HHHHHHHHHHHHhcCCCccH
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSM----PLKEKAAIGVEAITTDPENA  281 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~v~~~aa~~L~~Ls~~~~~~  281 (579)
                      ...+.+.+. +++...+..|+.-|..++. ++.....++...++..|.++..++..    ++.....+++..+-...-..
T Consensus        85 a~~i~e~l~-~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILT-EGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHh-CCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            455677777 8888888889999999999 99999999999999999999999743    45555556665555443345


Q ss_pred             HHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          282 WAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      |......+|.....+.+.  .+..+...|+..|-++..... .+..+.++--+..|+..+...+..++..|+..+..+-.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            555555566666666543  344667788888888877544 56667788889999999999998898888888777753

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.83  E-value=1.6  Score=49.61  Aligned_cols=187  Identities=14%  Similarity=0.173  Sum_probs=126.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ..+.+-..+-+.++..|.+|++.+...+.+.. ........|.+..+++....+.+..+...|+.+|..|+...... ..
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~  331 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR  331 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence            34566677788999999999999999987554 11111133445555554433677888899999999998833332 11


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Ch-h
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VE-D  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~-~  320 (579)
                      =...++.+.|+..+.+....++..+..++-.......      -....+.+..++.++++..+..+...+..... .+ .
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            1234788999999998888888777776666554111      12245778888999999888877666644433 22 2


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                      +...-.-.+.+|.++....+.+.+|+..+.+++..+-
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            2222223457788888888889999999999988764

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=3.9  Score=45.75  Aligned_cols=179  Identities=12%  Similarity=0.101  Sum_probs=122.5

Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 047123          296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQR  375 (579)
Q Consensus       296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~  375 (579)
                      .+.++-+.++..++..|+.+....+....+..++++......+.+.++-+--+|+..+..||.-.+        +..++-
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d  806 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD  806 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence            334455568888888888888766666667788999999999999998888889987777775332        445677


Q ss_pred             HHHh-hccCCC-ChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCh-hhH
Q 047123          376 LMHL-IQDSTS-SIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISD-GNK  449 (579)
Q Consensus       376 Lv~l-l~~~~~-~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~-~~~  449 (579)
                      +... ...... ..+.+-..-.++.++...  +........   .+.+++...+..+...|..+...+++|+ ... ...
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~---Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs  883 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAV---LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS  883 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHH---HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence            7663 322221 013333344666666554  333333222   4555666667667777899999999999 222 333


Q ss_pred             HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ..|.+.+..++.+...+.+.-+|.+|+..+..+...
T Consensus       884 d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  884 DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            466666777788776778899999999999998764

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=16  Score=41.80  Aligned_cols=234  Identities=12%  Similarity=0.059  Sum_probs=133.1

Q ss_pred             cCCHHHHHHHHcc--------CCHHHHHHHHHHHHHhcC---CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          246 EGGLGPLLRILET--------GSMPLKEKAAIGVEAITT---DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       246 ~g~l~~Lv~lL~~--------~~~~v~~~aa~~L~~Ls~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                      .|.++-++.+|..        .++.-+..|.+++++|+.   .+..-....+.=.+..++..+++.---++..||+++..
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            3556677777762        256677888888888882   12222233333355666667777777899999999998


Q ss_pred             hhcCh-hhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCChHHH
Q 047123          315 IAAVE-DIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSSIVTV  390 (579)
Q Consensus       315 Ls~~~-~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~~~~  390 (579)
                      .+..+ .+...+.  .+++...+.|. +.+-.|+..|+-+|..+....+...+.+..  .+.++.|+++.+.... +.+.
T Consensus       489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt  565 (1010)
T KOG1991|consen  489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLT  565 (1010)
T ss_pred             HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHH
Confidence            88411 1111111  24555666665 666679999999999998876654443433  4556666666665443 1222


Q ss_pred             HHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc---C---CHHHHHHHHHHHHHhc-------CChhhHHHHHHH
Q 047123          391 ENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR---G---NVLLQQVSSSLLGNLS-------ISDGNKRAVASC  455 (579)
Q Consensus       391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~---~---~~~v~~~A~~aL~~L~-------~~~~~~~~i~~~  455 (579)
                      ..--..+...+..  +....+.+.   ....+++++..   .   +.+-+..|.++|..+.       ..++.-+.+...
T Consensus       566 ~vme~iV~~fseElsPfA~eL~q~---La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~  642 (1010)
T KOG1991|consen  566 NVMEKIVCKFSEELSPFAVELCQN---LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI  642 (1010)
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHH---HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2222223333322  333334433   55666777763   2   2234455555555554       344444444444


Q ss_pred             -HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          456 -MGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       456 -v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                       .+..-.+| +.+-.++-+.+.....++....
T Consensus       643 ~l~vi~~iL-~~~i~dfyeE~~ei~~~~t~~~  673 (1010)
T KOG1991|consen  643 VLPVIGFIL-KNDITDFYEELLEIVSSLTFLS  673 (1010)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHHHHhhhhhhh
Confidence             55555566 5545566666677666665443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.63  E-value=21  Score=42.87  Aligned_cols=142  Identities=14%  Similarity=0.166  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHH-HHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAV-VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~-i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ..++..++..|.......|..|+.||..+...++..... -++.|+..    -+. +....||+.|+..++.....+++.
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~-DssasVREAaldLvGrfvl~~~e~  889 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLN-DSSASVREAALDLVGRFVLSIPEL  889 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhc-cchhHHHHHHHHHHhhhhhccHHH
Confidence            346777888888888999999999999998777643221 12223222    233 667899999999999665546665


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHhh
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR---SGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLs  316 (579)
                      ..++.     ..+..-..+....||..+..+++.++...+.-..+     +....+++.   ++...+++.+..++.++.
T Consensus       890 ~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  890 IFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             HHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            55443     23333344556778999999999988533222222     122223322   223335666666665554


Q ss_pred             c
Q 047123          317 A  317 (579)
Q Consensus       317 ~  317 (579)
                      .
T Consensus       960 F  960 (1692)
T KOG1020|consen  960 F  960 (1692)
T ss_pred             c
Confidence            3

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.59  E-value=5.9  Score=36.45  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc-HHHHHH
Q 047123          301 TALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-LQRLMH  378 (579)
Q Consensus       301 ~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~-i~~Lv~  378 (579)
                      ++.++.+++.++.-|+. ++..-+     ..++.+...|.++++.+|..|+.+|..|...+-     +.-.|- +..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence            46788899999988876 333222     357888999999999999999999999986431     111233 367777


Q ss_pred             hhccCCCChHHHHHHHHHHHHcccc
Q 047123          379 LIQDSTSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       379 ll~~~~~~~~~~~~A~~aL~~L~~~  403 (579)
                      .+.+.++  .++..|..++..+...
T Consensus        71 ~l~D~~~--~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENP--EIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCH--HHHHHHHHHHHHHHHh
Confidence            7766655  8999999999988766

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.57  E-value=9.7  Score=38.88  Aligned_cols=217  Identities=10%  Similarity=0.071  Sum_probs=151.2

Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Ccc-----HHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PEN-----AWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~-----~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                      +...+.+..|+..|..-+-+.+..++.+..++-.. .+.     ..-+..+  .++..|+.--  +++++--.+...|+.
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence            34468899999999999999999999999888742 222     2233333  3555555543  345556677888899


Q ss_pred             hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHH
Q 047123          315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~  391 (579)
                      ...++.....+.....+..+.+++..++=++...|..++..+-..+...-.....   .........++.+++.  -.+.
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY--vtkr  227 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY--VTKR  227 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH--HHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe--Eeeh
Confidence            8889888888888888889999999999999999999999976655554444444   3455677778888776  8999


Q ss_pred             HHHHHHHHcccc-hhHHHHHh--hcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHhc
Q 047123          392 NALLAISSLSLS-DSAARILS--STTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD----GNKRAVASCMGSLIKLM  463 (579)
Q Consensus       392 ~A~~aL~~L~~~-~~~~~l~~--~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~----~~~~~i~~~v~~Lv~lL  463 (579)
                      .++..|..|-.. .+...+..  +++.-+..++.+|++.+..+|.+|-.++.-...+|    +....+...=+.|++.+
T Consensus       228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl  306 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL  306 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred             hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence            999999999876 44332221  12355788899999999999999999988887443    44444444444444444

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.49  E-value=0.13  Score=32.28  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      +|.++++++ ++++++|..|+.+|+.++.
T Consensus         2 lp~l~~~l~-D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLN-DPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence            789999999 9999999999999999876

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=19  Score=41.98  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=129.7

Q ss_pred             CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHH
Q 047123          216 HHQSSIREQAVLALSIIVSANDESRKIVFEE--GGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVS  291 (579)
Q Consensus       216 ~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~  291 (579)
                      +.+..+|.++-+.|..++. .+.+.....+.  -....|..-+++.+...+.....+|..|-.  +.+.+..+. . .|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~-~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSS-SPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHH
Confidence            5578999999999999998 55444333221  123344444455566677777777777763  223333331 2 233


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHH--HHHHHHHhcCChhh
Q 047123          292 VLIEAFRSGTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLTSS--SNLAQENA--ADCIATLAASGEYF  363 (579)
Q Consensus       292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a--~~~L~~La~~~~~~  363 (579)
                      .++-.++..+...+..+..+|..++.    .++..+.  ..-.+...+..+..+  .+..+..+  +-++..+...    
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e----  815 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE----  815 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH----
Confidence            33333477788899999999988873    1111000  011344444444333  22222222  2333333221    


Q ss_pred             HHHHHhcCc----HHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          364 RLLIIQERG----LQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       364 r~~l~~~g~----i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                      ...+.+.+.    ++.+..++.+.+.  ++...|++.+..++..   .......+.   .++.++.+++.....++....
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sr--eI~kaAI~fikvlv~~~pe~~l~~~~~~---LL~sll~ls~d~k~~~r~Kvr  890 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSR--EIAKAAIGFIKVLVYKFPEECLSPHLEE---LLPSLLALSHDHKIKVRKKVR  890 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHcCCHHHHhhhHHH---HHHHHHHHHHhhhHHHHHHHH
Confidence            111223333    4444445566555  8999999999999887   333444443   788888888888899999988


Q ss_pred             HHHHHhc--CChhhHHHHHHH
Q 047123          437 SLLGNLS--ISDGNKRAVASC  455 (579)
Q Consensus       437 ~aL~~L~--~~~~~~~~i~~~  455 (579)
                      ..+-.|.  ...+.-+.+.+.
T Consensus       891 ~LlekLirkfg~~eLe~~~pe  911 (1176)
T KOG1248|consen  891 LLLEKLIRKFGAEELESFLPE  911 (1176)
T ss_pred             HHHHHHHHHhCHHHHHhhCHH
Confidence            8888887  444444444333

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.35  E-value=7.9  Score=40.34  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=75.8

Q ss_pred             HHHHHHHhccC---CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-c--CCCHHHHHHHHHHHHHhhccCh
Q 047123          164 IRDIFTRLQIG---GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-F--HHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       164 v~~Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~--~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      ...|...++..   .+..-..|+..+..+...+|.....+.+.|.++.+++-+. .  -++.++-..--.+++.||- |.
T Consensus       108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~  186 (379)
T PF06025_consen  108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN  186 (379)
T ss_pred             HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence            33444444433   5667788999999999999999999999999999998665 1  2346666677788999999 99


Q ss_pred             hhHHHHHhcCCHHHHHHHHccC
Q 047123          238 ESRKIVFEEGGLGPLLRILETG  259 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~~~  259 (579)
                      ...+.+.+.+.++.+++++.+.
T Consensus       187 ~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  187 RGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHHHHhcChHHHHHHHhCCH
Confidence            9999999999999999998764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=14  Score=38.95  Aligned_cols=157  Identities=8%  Similarity=-0.003  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123          158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      ....+.+..+.....+.+...|..|++.|++.++.-|..+......-....+-.|.+ ..+.+++-.++.+|..+.. ..
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D-~~~~~V~leam~~Lt~v~~-~~  331 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYD-DLNEEVQLEAMKCLTMVLE-KA  331 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHH-hh
Confidence            334455666667777788889999999999999886665554443333344445666 6678999999988887766 33


Q ss_pred             hhHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123          238 ESRKIVF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISA--YGGVSVLIEAFRSGTALTQSHAVGAI  312 (579)
Q Consensus       238 ~~~~~i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL  312 (579)
                      .++...- =-.+.-.+..+.++.+++++..+...+..|+.  ....+..+.+  .+...+++-++++.++.+- .||+..
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~  410 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE  410 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence            3322211 01234456677788899999999888888873  3334444443  2344566667777777554 444444


Q ss_pred             HHhhc
Q 047123          313 RNIAA  317 (579)
Q Consensus       313 ~nLs~  317 (579)
                      ...+.
T Consensus       411 ~~~c~  415 (533)
T KOG2032|consen  411 LRTCY  415 (533)
T ss_pred             HHhcC
Confidence            44443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.72  E-value=22  Score=40.68  Aligned_cols=277  Identities=9%  Similarity=0.100  Sum_probs=150.7

Q ss_pred             CcHHHHHHhhcc-------CCCHHHHHHHHHHHHHhhcc---ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 047123          204 GNVGYLISLLDF-------HHQSSIREQAVLALSIIVSA---NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEA  273 (579)
Q Consensus       204 g~v~~Lv~LL~~-------~~~~~~~~~A~~aL~~La~~---~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~  273 (579)
                      +.++.++..+..       ..++.-.+.|+.++++|+.-   ..-++.. .+.=.++.++..+.++..-.|..|||.+..
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            456666665540       12467777888888888751   1122222 222245566667778888899999999999


Q ss_pred             hcC-CCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChh-hHHHHHH--cCCHHHHHHHhcCCCHHHHHH
Q 047123          274 ITT-DPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVED-IKAALAE--EGAVPVLVQSLTSSSNLAQEN  348 (579)
Q Consensus       274 Ls~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~-~~~~l~~--~g~v~~Lv~lL~~~~~~v~~~  348 (579)
                      ++. +-.....+  ..++....+.+. +.+-.++..|+-+|..+-.+.+ +...+..  -+.++.|+.+.+.-+.+....
T Consensus       489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            993 22222222  123445555555 6666889999999988765433 3333332  123344444444333333332


Q ss_pred             HHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcc---CC-CChHHHHHHHHHHHHcccc----hhHHHHHhh-cCcHH
Q 047123          349 AADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQD---ST-SSIVTVENALLAISSLSLS----DSAARILSS-TTSFI  417 (579)
Q Consensus       349 a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~---~~-~~~~~~~~A~~aL~~L~~~----~~~~~l~~~-~~g~i  417 (579)
                      ++..+.  +...+.......+  ........+++..   .+ ..+.-...|.++|..+..-    ++...++.. .+-++
T Consensus       567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l  644 (1010)
T KOG1991|consen  567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL  644 (1010)
T ss_pred             HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            222221  1111111111111  1233455555553   11 2234445566666666543    222222221 11455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          418 IQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       418 ~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +.+-.+|.+.-.++-+++..++..++ ..++....+++-.+.+.+.+ .....+.-....-+|.|.....
T Consensus       645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~-~~~~~dyf~d~~~~l~N~vt~g  713 (1010)
T KOG1991|consen  645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVF-QDDGIDYFTDMMPALHNYVTYG  713 (1010)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhheeeC
Confidence            56666778887888888898888888 66666666666666666666 3333455556666777766543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.23  E-value=2.1  Score=39.53  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc--------CCCHHHHHHHHHHHHHhh
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF--------HHQSSIREQAVLALSIIV  233 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~--------~~~~~~~~~A~~aL~~La  233 (579)
                      ....++..+..+....  +.+..|....+.. ......+++.||+..|+.+|..        ..+...+..++.+|..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3456677776665432  4455555444433 3567778889999999998841        134578889999999999


Q ss_pred             ccChhhHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123          234 SANDESRKIVFE-EGGLGPLLRILETGSMPLKEKAAIGVEAIT  275 (579)
Q Consensus       234 ~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls  275 (579)
                      . +..+...++. .+++..++..|.+.+..++..+..+|..++
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9 7777777765 589999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.86  E-value=1.5  Score=40.52  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             HHHHHhcCcHHHHHHHhcC---------CCHHHHHHHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHH
Q 047123          281 AWAISAYGGVSVLIEAFRS---------GTALTQSHAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAA  350 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~ll~~---------~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~  350 (579)
                      ...|.+.||+..|+.+|..         .+...+..++.||+.+..+......+. ..+++..++..+.+.+..++..++
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            4477788999999998762         345788999999999999887777766 578999999999999999999999


Q ss_pred             HHHHHHh
Q 047123          351 DCIATLA  357 (579)
Q Consensus       351 ~~L~~La  357 (579)
                      ..|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=91.83  E-value=1  Score=40.58  Aligned_cols=146  Identities=14%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 047123          291 SVLIEAFR--SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII  368 (579)
Q Consensus       291 ~~Lv~ll~--~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~  368 (579)
                      ..++..+.  ..+++++..+.-++..+-  +..++...+ -.-+.+-..+..++.+-...+..++..+=...++....+.
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            33444443  356677888888887763  333333322 1122233334444444667777788877666666555554


Q ss_pred             -hcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcC-CHH-HHHHHHHHHHH
Q 047123          369 -QERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVL-LQQVSSSLLGN  441 (579)
Q Consensus       369 -~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~-~~~-v~~~A~~aL~~  441 (579)
                       .+|..+.++.++.....+...+..++.+|..=|..+.+...+..  .+++.|-+.++.. +.. ++..|+-.|..
T Consensus        83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence             68999999999884444458889999999988888766666666  6999999999644 455 67777777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=91.43  E-value=0.32  Score=30.43  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=16.3

Q ss_pred             HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123          456 MGSLIKLMECPKPVGLQEAATDAVLSLL  483 (579)
Q Consensus       456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~  483 (579)
                      +|.+++++ .+++++||..|+.+|+.++
T Consensus         2 lp~l~~~l-~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQLL-NDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHH-T-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            35566666 5556666666666666655

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=91.32  E-value=1.9  Score=48.47  Aligned_cols=185  Identities=17%  Similarity=0.199  Sum_probs=116.3

Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHhhccChhh-------------HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 047123          207 GYLISLLDFHHQSSIREQAVLALSIIVSANDES-------------RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEA  273 (579)
Q Consensus       207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~-------------~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~  273 (579)
                      ..|+.+|+ .  +++-..++.++.-+..+.+..             |+.++ ...+|.|++.....+...+..-..+|.+
T Consensus       818 ~klld~Ls-~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  818 EKLLDLLS-G--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHhcC-C--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            34555555 3  445556666666665533332             22222 2467888888887777788888888888


Q ss_pred             hcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC---HHHHHH
Q 047123          274 ITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS---NLAQEN  348 (579)
Q Consensus       274 Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~---~~v~~~  348 (579)
                      .-.+-+....+-+ ....|.|++.+.-.|..+|..+..++.-+.. .+.....- -...||.++.+=.+.+   ..+++.
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHHHHhcCCCCCcchhHHHHH
Confidence            7654333322222 3467888888888999999899888866543 22211111 1124566555544433   579999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       349 a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      |+.||..|+..-|..+-.-.+..+++.|...|++...  .+|+.|+++=.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR--LVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH--HHHHHHHHHhh
Confidence            9999999998554433344456677888888877665  67888776543

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=91.27  E-value=0.37  Score=42.78  Aligned_cols=75  Identities=19%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhhhcccccchhhhhhHHHHHHHhhhhccccccCCCCCCCChhHHhHHHHHHHHHHHHHHHHHhccCC
Q 047123           29 LITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLS  104 (579)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~l~~~c~~~  104 (579)
                      .+..+.+.+..++..+..|+.-...+.+.++.+.+...++-......++|- ++-+..+.++|++|..|+++|..-
T Consensus        14 ~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~   88 (147)
T PF05659_consen   14 VFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKV   88 (147)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhccc
Confidence            344556667778889999999999999999999999999887777788887 889999999999999999999764

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.21  E-value=0.32  Score=46.14  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHcccc-h---hHHHHHhhcCcHHHHHHHHHhc---------------CCHHHHHHHHHHHHHhcCChhh
Q 047123          388 VTVENALLAISSLSLS-D---SAARILSSTTSFIIQLGEFIKR---------------GNVLLQQVSSSLLGNLSISDGN  448 (579)
Q Consensus       388 ~~~~~A~~aL~~L~~~-~---~~~~l~~~~~g~i~~L~~lL~~---------------~~~~v~~~A~~aL~~L~~~~~~  448 (579)
                      .++++|.-.|.|++.. +   .-+.+.-   -++.-|+++.-.               ..-..|..|..+|+.|+..+.|
T Consensus        81 ~lREnalV~laNisgqLdLs~~~e~I~~---PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~N  157 (257)
T PF12031_consen   81 QLRENALVTLANISGQLDLSDYPESIAR---PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENN  157 (257)
T ss_pred             HHhhcceEeeeeeeeeeecccCchHHHH---HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccC
Confidence            6788888888888875 1   1111111   123334444311               1236789999999999965555


Q ss_pred             HHHHHHH---------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh-HHHhhcccHHHHHhhcCCCchh
Q 047123          449 KRAVASC---------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK-ELVRDEKSVMRLMQMLDPKNEA  512 (579)
Q Consensus       449 ~~~i~~~---------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~~~~~~~i~~Lv~lL~~~~~~  512 (579)
                      ...+..+         +..|++++...++...||.|...|.+|+..++... .+..+.+.|..|+..++..+..
T Consensus       158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQN  231 (257)
T ss_pred             cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            5444333         77888888777889999999999999998876644 4555577899999999866544

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.78  E-value=1.1  Score=49.79  Aligned_cols=206  Identities=16%  Similarity=0.168  Sum_probs=132.0

Q ss_pred             hhhHHHHHhcCCHHHHHHHHccC------CHHHHHHHHHHHHHhc--------CCCccHHHHHhcCcHHHHHHHhcCC--
Q 047123          237 DESRKIVFEEGGLGPLLRILETG------SMPLKEKAAIGVEAIT--------TDPENAWAISAYGGVSVLIEAFRSG--  300 (579)
Q Consensus       237 ~~~~~~i~~~g~l~~Lv~lL~~~------~~~v~~~aa~~L~~Ls--------~~~~~~~~i~~~g~i~~Lv~ll~~~--  300 (579)
                      +.+++.-+..|+.+..+.-+..+      +.+..+..++-+..+-        ..-+....+.+.+++..+++++.-.  
T Consensus       536 e~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~  615 (1516)
T KOG1832|consen  536 ESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPV  615 (1516)
T ss_pred             HhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCcc
Confidence            44466666666666666644443      3344555555555443        1234566788889999999998742  


Q ss_pred             ------CHHHHHHHHHHHHHhhcChhhHHHHHHc--------CCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChh
Q 047123          301 ------TALTQSHAVGAIRNIAAVEDIKAALAEE--------GAVPVLVQSLT----SSSNLAQENAADCIATLAASGEY  362 (579)
Q Consensus       301 ------~~~~~~~a~~aL~nLs~~~~~~~~l~~~--------g~v~~Lv~lL~----~~~~~v~~~a~~~L~~La~~~~~  362 (579)
                            ..++..+|+.+|.-+...|.++.++++.        .++..++..-.    -.+++++..|+.++.|+....+.
T Consensus       616 w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~  695 (1516)
T KOG1832|consen  616 WRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT  695 (1516)
T ss_pred             ccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC
Confidence                  2357788999998888899998887742        13444333221    12789999999999999887766


Q ss_pred             hHHHHHh-cCc---HHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCH-----HHHH
Q 047123          363 FRLLIIQ-ERG---LQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNV-----LLQQ  433 (579)
Q Consensus       363 ~r~~l~~-~g~---i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~-----~v~~  433 (579)
                      .|...+. -|.   -+.  ..+..++. ....++..+-.|+-...          +++|..|+++|+...|     .++.
T Consensus       696 ~r~s~i~~v~S~~g~~r--~~l~~~~k-s~~le~~l~~mw~~Vr~----------ndGIkiLl~Ll~~k~P~t~aD~IRa  762 (1516)
T KOG1832|consen  696 TRPSTIVAVGSQSGDRR--IFLGAGTK-SAKLEQVLRQMWEAVRG----------NDGIKILLKLLQYKNPPTTADCIRA  762 (1516)
T ss_pred             cchhhhhhccccCCCcc--ccccCCCc-hHHHHHHHHHHHHHHhc----------CccHHHHHHHHhccCCCCcHHHHHH
Confidence            5544322 111   010  01222221 23445666666654332          2789999999976533     6888


Q ss_pred             HHHHHHHHhcCChhhHHHHHHH
Q 047123          434 VSSSLLGNLSISDGNKRAVASC  455 (579)
Q Consensus       434 ~A~~aL~~L~~~~~~~~~i~~~  455 (579)
                      .|+.+|.-|+.+++.|+.+..-
T Consensus       763 lAc~~L~GLaR~~tVrQIltKL  784 (1516)
T KOG1832|consen  763 LACRVLLGLARDDTVRQILTKL  784 (1516)
T ss_pred             HHHHHHhccccCcHHHHHHHhC
Confidence            9999999999999999887764

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=90.36  E-value=14  Score=38.72  Aligned_cols=167  Identities=12%  Similarity=0.133  Sum_probs=100.9

Q ss_pred             HHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCC
Q 047123          264 KEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS  341 (579)
Q Consensus       264 ~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~  341 (579)
                      +..|..-|.. ++......|.=.-..++..+++.+.+ .+...++.|+++|..++.+...+..-..+=+|..+++.-.+.
T Consensus       304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds  383 (516)
T KOG2956|consen  304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS  383 (516)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC
Confidence            4444443333 33455555554444566778888887 677889999999999988655544333333555555555555


Q ss_pred             CHHHHHHHH-HHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHH
Q 047123          342 SNLAQENAA-DCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFI  417 (579)
Q Consensus       342 ~~~v~~~a~-~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i  417 (579)
                      .+.+...|. .|+.-++..++..        .|..+..++.+.+.  ..-..++..+..++..   +.-..++.   .+.
T Consensus       384 ~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~--~~~~~~iKm~Tkl~e~l~~EeL~~ll~---dia  450 (516)
T KOG2956|consen  384 QDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADE--PRAVAVIKMLTKLFERLSAEELLNLLP---DIA  450 (516)
T ss_pred             chhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcc--hHHHHHHHHHHHHHhhcCHHHHHHhhh---hhh
Confidence            554444444 4455556655532        23334444444333  4444555566666666   22333333   689


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          418 IQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       418 ~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      |++++...+.+..||..|...|..+.
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            99999999999999998888877664

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.33  E-value=14  Score=39.11  Aligned_cols=203  Identities=14%  Similarity=0.079  Sum_probs=115.2

Q ss_pred             CHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh-cCCCHHHHHHHH----HHHHHhhc-Chh
Q 047123          248 GLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF-RSGTALTQSHAV----GAIRNIAA-VED  320 (579)
Q Consensus       248 ~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~----~aL~nLs~-~~~  320 (579)
                      .+..++.+..+. +...+..++.+++.|...-..-..+  ...+..+..-. ...+...+..+.    |+...+.. .+.
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            455566665443 5777888888888887421111100  12233333333 222333333333    34333322 221


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHHh----cCcHHHHHHhhccCCCChH
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF--------RLLIIQ----ERGLQRLMHLIQDSTSSIV  388 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~--------r~~l~~----~g~i~~Lv~ll~~~~~~~~  388 (579)
                      .-.     ..+..|+.++.+  +.+...++..+.-+..+.+.+        -+.+.+    .-.+|.|++..+..+.  .
T Consensus       268 ~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~  338 (415)
T PF12460_consen  268 LAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--E  338 (415)
T ss_pred             hHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--h
Confidence            111     135567777766  567788888888887763331        112222    2345777777666665  5


Q ss_pred             HHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHH
Q 047123          389 TVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIK  461 (579)
Q Consensus       389 ~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~  461 (579)
                      .+.....+|.++..+--...+...-+..+|.|++-|...+.+++..+..+|..+. .+++.-..-.+. |+.|++
T Consensus       339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            7888888999988871122222222247888999999999999999999999998 444433322222 555554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.13  E-value=23  Score=37.27  Aligned_cols=128  Identities=23%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHhhccChh----hHHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCC
Q 047123          209 LISLLDFHHQSSIREQAVLALSIIVSANDE----SRKIVFEEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTD  277 (579)
Q Consensus       209 Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~----~~~~i~~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~  277 (579)
                      +..+++ ..+...|-.|+-.+..+.. +++    +++.++++=|.+-+-++|.+.       +...+.-+...|.-.+..
T Consensus        16 ~~~L~~-~k~D~e~fAaLllVTK~vK-~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   16 CLKLLK-GKRDEERFAALLLVTKFVK-NDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             HHHHhc-ccChHHHHHHHHHHHHHhc-ccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            445555 5566667777777777777 443    467788888888888888764       233456666777777877


Q ss_pred             CccHHHHHhcCcHHHHHHHhcCC-CHH------HHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123          278 PENAWAISAYGGVSVLIEAFRSG-TAL------TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL  338 (579)
Q Consensus       278 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~------~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL  338 (579)
                      ++....---.+.||.|.+++..+ |++      +.+.+-.+|..++..+.....++..|+++.+.++.
T Consensus        94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence            76432222235678898888753 333      77888899999999999999999999999998775

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.95  E-value=7.2  Score=45.27  Aligned_cols=140  Identities=14%  Similarity=0.175  Sum_probs=104.3

Q ss_pred             cHHHHHHhhc---cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-Cc
Q 047123          205 NVGYLISLLD---FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTD-PE  279 (579)
Q Consensus       205 ~v~~Lv~LL~---~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~-~~  279 (579)
                      +.|.+++..+   ..++|++|..|.-+|+.+..-+.+..     +.-+|.|+.+|. ++++.+|.++..+++.|+.. |.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4566666663   14579999999999997765232222     234889999998 67899999999999999843 22


Q ss_pred             cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       280 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ..+.     .-+.|..-+.+.++.+++.|..+|.+|-.++-    +--.|.+..+..++.++++.++..|-.....|+.
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            2222     22567778889999999999999999977543    3356889999999999999998888877666664

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.82  E-value=6.6  Score=43.31  Aligned_cols=157  Identities=12%  Similarity=0.028  Sum_probs=98.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHh-hcChhhHHHHHHcCCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 047123          295 EAFRSGTALTQSHAVGAIRNI-AAVEDIKAALAEEGAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFRLLIIQERG  372 (579)
Q Consensus       295 ~ll~~~~~~~~~~a~~aL~nL-s~~~~~~~~l~~~g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~  372 (579)
                      +++.+.|+-++.....++.-- +..       ...++|..|++. +++.+.+|+..|+-+|+-++..+++.         
T Consensus       526 el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------  589 (929)
T KOG2062|consen  526 ELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------  589 (929)
T ss_pred             HHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------
Confidence            466667776666665554321 111       123467777777 57889999999999999988877652         


Q ss_pred             HHHHHHhhc-cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhh
Q 047123          373 LQRLMHLIQ-DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGN  448 (579)
Q Consensus       373 i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~  448 (579)
                      ++..+++|. +.++  .+|--++.+|.-.|.+ ...        .++..|-.+..+...-||+.|+-++.-+.  +++..
T Consensus       590 ~~s~V~lLses~N~--HVRyGaA~ALGIaCAGtG~~--------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~  659 (929)
T KOG2062|consen  590 LPSTVSLLSESYNP--HVRYGAAMALGIACAGTGLK--------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL  659 (929)
T ss_pred             chHHHHHHhhhcCh--hhhhhHHHHHhhhhcCCCcH--------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence            555666654 4444  8999999999988877 221        12333333445556678888887777766  66665


Q ss_pred             HHHHHHHHHHHHHhccCCCC--HhHHHHHHHH
Q 047123          449 KRAVASCMGSLIKLMECPKP--VGLQEAATDA  478 (579)
Q Consensus       449 ~~~i~~~v~~Lv~lL~~~~~--~~v~~~a~~a  478 (579)
                      ...+..-...+.+++ ..++  ..++..|+-+
T Consensus       660 ~pkv~~frk~l~kvI-~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  660 CPKVNGFRKQLEKVI-NDKHEDGMAKFGAILA  690 (929)
T ss_pred             CchHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence            555554456677766 4433  3334444433

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=89.56  E-value=30  Score=36.44  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=117.9

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhcCCC----ccHHHHHhcCcHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcChh
Q 047123          252 LLRILETGSMPLKEKAAIGVEAITTDP----ENAWAISAYGGVSVLIEAFRSG-------TALTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       252 Lv~lL~~~~~~v~~~aa~~L~~Ls~~~----~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLs~~~~  320 (579)
                      +..+++..+.+-|-.+.-.+.++..+.    .++..+.+.-|.+-+-.++.++       +...+..++.+|...|..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            555666666666777777777888544    3566677766667777777642       22456667777888888776


Q ss_pred             h--HHHHHHcCCHHHHHHHhcCC-CH------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHH
Q 047123          321 I--KAALAEEGAVPVLVQSLTSS-SN------LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE  391 (579)
Q Consensus       321 ~--~~~l~~~g~v~~Lv~lL~~~-~~------~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~  391 (579)
                      .  ...+++  .||.+...+..+ ++      .+.+.+-.||...+... .....++..|+++.+-++-...+. ..-+.
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~-~~d~a  171 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDG-SHDMA  171 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCC-chhHH
Confidence            5  344554  689999888543 23      38889999999999875 457888899999999886554443 13344


Q ss_pred             HHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123          392 NALLAISSLSLS-----DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL  442 (579)
Q Consensus       392 ~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L  442 (579)
                      .+..++.-+.+.     +....+..    .+..+..-+...+...+.+.+.+|..+
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fla----li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLA----LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444444433     22222221    234444445566777788888887744

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.46  E-value=2.4  Score=32.62  Aligned_cols=67  Identities=21%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123          179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEG  247 (579)
Q Consensus       179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g  247 (579)
                      ...|+.+++++++ .+.....+.+.+.++.++++.+.++...+|-.|..+|+.++. ..+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            4678999999986 445566666789999999998856779999999999999999 888888877665

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.19  E-value=2.1  Score=32.97  Aligned_cols=66  Identities=14%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcC
Q 047123          264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEG  329 (579)
Q Consensus       264 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g  329 (579)
                      ...+.+++.+++..+.....+-+.+.++.++++..+ +...+|-.+.++|.-++...+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            467899999999988888888888999999998875 455899999999999999988887776655

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.16  E-value=0.87  Score=43.33  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=74.0

Q ss_pred             HhHHHHHHHHHHHhhcCCcchhHHHh------hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCc
Q 047123          469 VGLQEAATDAVLSLLTVRSNRKELVR------DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGA  542 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~~~~~~~~~~------~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~  542 (579)
                      ..-|..|.++|+.|+..+.|.-.++.      -+.-+..|+++|..++..+.+++++..|.+|+..+..-+|..-.+.+.
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            34588999999999988777554432      244556788888888878899999999999999887667777778999


Q ss_pred             hHHHHhhhccCCchHHHHHH
Q 047123          543 YQHLQKLAETEVPGAKKVLQ  562 (579)
Q Consensus       543 ~~~L~~L~~~~~~~ak~~~~  562 (579)
                      +.+|+..++..+..+.....
T Consensus       218 i~~Li~FiE~a~~~~~~~~~  237 (257)
T PF12031_consen  218 ISHLIAFIEDAEQNAHQVAS  237 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999888766555444

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.49  E-value=6.4  Score=38.85  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHcc----CCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHH
Q 047123          222 REQAVLALSIIVSANDESRKIVFEEG--GLGPLLRILET----GSMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVL  293 (579)
Q Consensus       222 ~~~A~~aL~~La~~~~~~~~~i~~~g--~l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~L  293 (579)
                      +--++..++.+.. ++.....+...+  ....+..++..    .++..+..++++++|+-.++..+..+..+.  .+-..
T Consensus        80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~  158 (268)
T PF08324_consen   80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL  158 (268)
T ss_dssp             -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred             chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence            5556667777777 777766665443  34555555544    367889999999999998888888777644  34444


Q ss_pred             HHHhcCC----CHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhc-C-CCHHHHHHHHHHHHHHhcCChhhHH
Q 047123          294 IEAFRSG----TALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLT-S-SSNLAQENAADCIATLAASGEYFRL  365 (579)
Q Consensus       294 v~ll~~~----~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~-~-~~~~v~~~a~~~L~~La~~~~~~r~  365 (579)
                      +..+...    +..++..++..+.|++..  ......-.....+..+++.+. . .++++...++-+|+++...++..+.
T Consensus       159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~  238 (268)
T PF08324_consen  159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ  238 (268)
T ss_dssp             CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence            4434343    678899999999999752  111000001113445555332 2 5889999999999999977655433


Q ss_pred             HHHhcCcHHHH
Q 047123          366 LIIQERGLQRL  376 (579)
Q Consensus       366 ~l~~~g~i~~L  376 (579)
                      .....|+-..+
T Consensus       239 ~~~~l~~~~~~  249 (268)
T PF08324_consen  239 LAKSLDVKSVL  249 (268)
T ss_dssp             HCCCCTHHHHH
T ss_pred             HHHHcChHHHH
Confidence            33333433333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=88.21  E-value=26  Score=33.86  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             HHHHHH-hhccCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 047123          206 VGYLIS-LLDFHHQSSIREQAVLALSIIVSAND-ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA  283 (579)
Q Consensus       206 v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~  283 (579)
                      ++.|+. +-+ ..++..+...+.+|..++. ++ .+...+     +..|..+.+.+....+..+.+.+..+-...+-.. 
T Consensus         2 l~~L~~~l~~-~~~~~~~~~~L~~L~~l~~-~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-   73 (234)
T PF12530_consen    2 LPLLLYKLGK-ISDPELQLPLLEALPSLAC-HKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-   73 (234)
T ss_pred             hHHHHHHhcC-CCChHHHHHHHHHHHHHhc-cCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence            344444 344 7789999999999999998 55 443333     4555556666667766666666666664322111 


Q ss_pred             HHhcCcHHHHHHH--hc------CC--CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHH
Q 047123          284 ISAYGGVSVLIEA--FR------SG--TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADC  352 (579)
Q Consensus       284 i~~~g~i~~Lv~l--l~------~~--~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~  352 (579)
                          +.++.++..  ++      ++  ..+.......++..++...+.+.    ...++.+..++ ++.++.++..++..
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence                344444443  11      11  22344444566777766333311    12567777888 78888899999999


Q ss_pred             HHHHhc
Q 047123          353 IATLAA  358 (579)
Q Consensus       353 L~~La~  358 (579)
                      |..++.
T Consensus       146 l~~Lc~  151 (234)
T PF12530_consen  146 LAPLCE  151 (234)
T ss_pred             HHHHHH
Confidence            999984

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.93  E-value=51  Score=36.98  Aligned_cols=67  Identities=22%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          247 GGLGPLLRILE----TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       247 g~l~~Lv~lL~----~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      .+..++...++    +....+...+++++.+|....  -..+.  ..+..|--+|.+....+|..|.++|..++.
T Consensus       241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm  311 (865)
T KOG1078|consen  241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAM  311 (865)
T ss_pred             cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            34555555554    346778889999999887421  11121  266778888888889999999999988876

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.70  E-value=6  Score=35.96  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      ......++..+.++|++++++.|..++..+...+..++  ...+.  ....+..|+..|+....+.+.+.++.+|..|..
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~   97 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD   97 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            45566678888999999999999999988888886543  23332  244688888999833447788888888887754


Q ss_pred             ---cChhhHHHHHhc---CCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123          235 ---ANDESRKIVFEE---GGLGPLLRILETGSMPLKEKAAIGVEAIT  275 (579)
Q Consensus       235 ---~~~~~~~~i~~~---g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls  275 (579)
                         +.++....+...   +.++.++++++.  ....+.+..+|..+-
T Consensus        98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen   98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL  142 (165)
T ss_pred             HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence               244444444322   345555555553  345556666666654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.44  E-value=4.1  Score=35.97  Aligned_cols=73  Identities=16%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      ..++.+..+|+++++.++..|+..|-.+.+. .+.....+.+.+++..|++++....++.+++.++..+..-+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999988888775 456777788999999999999734668999999999887775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=87.12  E-value=22  Score=40.71  Aligned_cols=177  Identities=16%  Similarity=0.110  Sum_probs=113.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCC---HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 047123          296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGA---VPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQER  371 (579)
Q Consensus       296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~---v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g  371 (579)
                      -+.+.+..-+..++..+........   .....+.   +-.++... .+.+..+...++.+|..++..-... ..=...+
T Consensus       261 ~~~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~  336 (815)
T KOG1820|consen  261 EMLSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKN  336 (815)
T ss_pred             hhhccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHh
Confidence            3445666667777766665544333   1122233   33333332 4557788888999999888643221 1111245


Q ss_pred             cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCh---h
Q 047123          372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISD---G  447 (579)
Q Consensus       372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~---~  447 (579)
                      ..+.++..+.....  .++..+..++...+.....     .  ...+.+..++.++++..+......+.... ..+   .
T Consensus       337 v~p~lld~lkekk~--~l~d~l~~~~d~~~ns~~l-----~--~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  337 VFPSLLDRLKEKKS--ELRDALLKALDAILNSTPL-----S--KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             hcchHHHHhhhccH--HHHHHHHHHHHHHHhcccH-----H--HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            56777777776655  7777777777766653111     1  35666778899999999988777776666 222   2


Q ss_pred             hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          448 NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       448 ~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      .+..+...++.++... ++.+.+||.+|.+++..+...+
T Consensus       408 ~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             chhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHHHh
Confidence            3334444489999999 7788999999999999998754

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.74  E-value=34  Score=33.66  Aligned_cols=173  Identities=13%  Similarity=0.183  Sum_probs=99.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcChh--------hHHHHHHcCCHHHHHHHhcCCC----HHHHHHHHHHHHHHhc
Q 047123          291 SVLIEAFRSGTALTQSHAVGAIRNIAAVED--------IKAALAEEGAVPVLVQSLTSSS----NLAQENAADCIATLAA  358 (579)
Q Consensus       291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~--------~~~~l~~~g~v~~Lv~lL~~~~----~~v~~~a~~~L~~La~  358 (579)
                      +.+++-+.+..  ..+.+...|..++..+.        .|-.+.=.+.+|.++.-+.+++    ......++..|+.+|.
T Consensus        67 ~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~  144 (262)
T PF14225_consen   67 PLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE  144 (262)
T ss_pred             HHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence            33334444433  36677778877765332        2333333445666666666665    2344566677787774


Q ss_pred             CChhhHHHHHhcCcHHHHHH-hhccCCC-ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          359 SGEYFRLLIIQERGLQRLMH-LIQDSTS-SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       359 ~~~~~r~~l~~~g~i~~Lv~-ll~~~~~-~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                      ...        ...+..++. +.+..-. +.+-...++..|+.-...+     .+.  ..+..|+.+|.++.+.+|....
T Consensus       145 ~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-----~~~--~~l~~Ll~lL~n~~~w~~~~~L  209 (262)
T PF14225_consen  145 AQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-----HEF--QILTFLLGLLENGPPWLRRKTL  209 (262)
T ss_pred             hCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-----hHH--HHHHHHHHHHhCCcHHHHHHHH
Confidence            321        223443433 3332221 1223333333333221111     111  4677799999999999999999


Q ss_pred             HHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          437 SLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       437 ~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      .+|+.+-...+.++.++.. +.++.+++ .+   +....|.++|-+...
T Consensus       210 ~iL~~ll~~~d~~~~~~~dlispllrlL-~t---~~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  210 QILKVLLPHVDMRSPHGADLISPLLRLL-QT---DLWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHHHhccccCCCCcchHHHHHHHHHh-CC---ccHHHHHHHHHHHHh
Confidence            9999998666666655555 99999999 43   344566666666543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.33  E-value=30  Score=37.97  Aligned_cols=166  Identities=15%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcC-c
Q 047123          340 SSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTT-S  415 (579)
Q Consensus       340 ~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~-g  415 (579)
                      .-..+++--|+.+|+.+.......-..+-.   ...+..++..+.   .++..+..++++|.|+-.+..-..++.+.. -
T Consensus       555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~  631 (745)
T KOG0301|consen  555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSNPAGRELFMSRLES  631 (745)
T ss_pred             cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            344556666666666665543222111111   123334444333   223788899999999988733333333300 1


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHH-HHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhH
Q 047123          416 FIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKR-AVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKE  491 (579)
Q Consensus       416 ~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~-~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~  491 (579)
                      .+..+.+.-...+..++...+....|++  ...++-+ ...+- ...+..+++..++.+.......||++|+..+....+
T Consensus       632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~  711 (745)
T KOG0301|consen  632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ  711 (745)
T ss_pred             HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence            2222222223345677776666666676  1111111 11122 333444554455666788899999999998888887


Q ss_pred             HHhhcccHHHHHhhcCCC
Q 047123          492 LVRDEKSVMRLMQMLDPK  509 (579)
Q Consensus       492 ~~~~~~~i~~Lv~lL~~~  509 (579)
                      +.+ ...+..+.+-+.+.
T Consensus       712 ~A~-~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  712 LAK-NRSVDSIAKKLKEA  728 (745)
T ss_pred             HHH-hcCHHHHHHHHHHh
Confidence            775 66777777766544

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.24  E-value=10  Score=37.66  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ..+...+..|.+.+++.+.+++..|+.++...++...-... ..|..+++-++ .....+-..|+.++..|..   .+..
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslK-NlRS~VsraA~~t~~difs---~ln~  162 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLK-NLRSAVSRAACMTLADIFS---SLNN  162 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH---HHHH
Confidence            45778889999999999999999999998877765554443 34556666677 6677888888888888877   3333


Q ss_pred             HHHhcCCHHHHHHHH-cc---CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          242 IVFEEGGLGPLLRIL-ET---GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL-~~---~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      .+.+  .+..++..| ..   .+..+++.|-.+|..+..+-.-..      +++.|+..+++.++.++..++.+..+.
T Consensus       163 ~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  163 SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence            4433  344444444 22   366789999999999885433222      457777788888888887777665443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=85.76  E-value=33  Score=38.07  Aligned_cols=133  Identities=21%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhH
Q 047123          327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSA  406 (579)
Q Consensus       327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~  406 (579)
                      .+.++|.|..-+++.+..+|+.++..+...+..=   -...++.-.++.+.++....+ +..++.+++-++..+...  .
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i---D~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q~--l  460 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESI---DVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQR--L  460 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc---cHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHHH--H
Confidence            4456778888888889999999999998887632   234556667888888733333 357888999988888733  2


Q ss_pred             HHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCC
Q 047123          407 ARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKP  468 (579)
Q Consensus       407 ~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~  468 (579)
                      +.....  .-+.++..-.+..++.+......+..++. ........+.+. +|.++-+. ....
T Consensus       461 D~~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls-~~~~  521 (700)
T KOG2137|consen  461 DKAAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS-VAPS  521 (700)
T ss_pred             HHHHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh-hccc
Confidence            222111  34556666677789999988888888887 222223444455 66666666 4443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.30  E-value=7.2  Score=35.22  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI  284 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i  284 (579)
                      .++.|+++|+.+.+..+|..++++|+.|+. -+-++.+....+. +.-.  -...+.....   ..+.+.. .....+.+
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~~~~-~~~~--~~~~~~~~~~---~~l~~~~-~~~~~ee~   82 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQKSL-DSKS--SENSNDESTD---ISLPMMG-ISPSSEEY   82 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhcccccC-Cccc--cccccccchh---hHHhhcc-CCCchHHH
Confidence            467788888844569999999999999988 5445444332211 0000  0000011111   1111111 11123334


Q ss_pred             HhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047123          285 SAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL  356 (579)
Q Consensus       285 ~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L  356 (579)
                      .-..++..|+.++++.+- .-...++.++.++......+..-.-..++|.+++.+...++..++....-|..+
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            444477888888887543 334456666666654322222111223788888888766667777666555554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.28  E-value=15  Score=34.73  Aligned_cols=146  Identities=13%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHH
Q 047123          264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-----TALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQ  336 (579)
Q Consensus       264 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~  336 (579)
                      ..++...|.-++++|+.+..|.+..+--.|..++...     ...++-.+++++..|..++  +....+....+||.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            4567777888899999999999877544444444422     2357888999999998743  45666777889999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCChhhH---HHHHh----cCcHHHHHHhh-ccCCCChHHHHHHHHHHHHcccchhHHH
Q 047123          337 SLTSSSNLAQENAADCIATLAASGEYFR---LLIIQ----ERGLQRLMHLI-QDSTSSIVTVENALLAISSLSLSDSAAR  408 (579)
Q Consensus       337 lL~~~~~~v~~~a~~~L~~La~~~~~~r---~~l~~----~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L~~~~~~~~  408 (579)
                      .+..+++..+..++..+..+..+|....   +.+-+    ...+..++..+ ..++.  .+..++.++-..||..+..+.
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~--RLlKh~iRcYlRLsd~p~aR~  274 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGST--RLLKHAIRCYLRLSDKPHARA  274 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHheeecCCHhHHH
Confidence            9999999999999999998877665422   22211    22233344333 33333  788889988888888754444


Q ss_pred             HHh
Q 047123          409 ILS  411 (579)
Q Consensus       409 l~~  411 (579)
                      ++.
T Consensus       275 lL~  277 (315)
T COG5209         275 LLS  277 (315)
T ss_pred             HHh
Confidence            443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.27  E-value=11  Score=34.25  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhc----CCh
Q 047123          372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLS----ISD  446 (579)
Q Consensus       372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~----~~~  446 (579)
                      .+..+.+++.+.+.  ..+..++..+..++....-+.+.+...-.+..++.+|+..+ ..+.+.+..++..|.    ..+
T Consensus        26 l~~ri~~LL~s~~~--~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSA--YSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCCh--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34566777777775  77888888888877763344454442245778888887754 466677777777765    566


Q ss_pred             hhHHHHH-HH----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123          447 GNKRAVA-SC----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       447 ~~~~~i~-~~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~  487 (579)
                      +..+.+. ..    ++.+++++ +.  ..+.+.+..+|..+...++
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~-~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLL-QD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHHCC
Confidence            6555543 33    66666677 22  5677888888888876543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=85.25  E-value=69  Score=35.85  Aligned_cols=314  Identities=14%  Similarity=0.067  Sum_probs=164.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-------CCHHHHHHHHHHHHHhhc-
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-------HQSSIREQAVLALSIIVS-  234 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-------~~~~~~~~A~~aL~~La~-  234 (579)
                      +++.-...-..|... -..|+.++.-.....++.    .-.|.++.++..|..+       .++.-.+.|++.+.++.. 
T Consensus       372 yirry~df~d~g~sp-dlaal~fl~~~~sKrke~----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~  446 (970)
T COG5656         372 YIRRYYDFFDNGLSP-DLAALFFLIISKSKRKEE----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSF  446 (970)
T ss_pred             HHHHhcchhcCCCCh-hHHHHHHHHHHhcccchh----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHH
Confidence            455555555555321 134455554443322221    1357788888888311       134556677777776654 


Q ss_pred             -cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123          235 -ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR  313 (579)
Q Consensus       235 -~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  313 (579)
                       ..+.-..-+.+.=.++.++..+++...-.+..+|..+..+..+  -+..-.-..+.....+.+++.+-.++..|+.||.
T Consensus       447 itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq  524 (970)
T COG5656         447 ITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQ  524 (970)
T ss_pred             hccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence             2333333444444577777788888889999999999999632  1111112234455566777777788999999998


Q ss_pred             HhhcChhhHHHHHHcCCHHHHHHHh---cCCCHHHHHHHHHHHHH-HhcCChhhHHHHHh---cCcHHHHHHhhccCC--
Q 047123          314 NIAAVEDIKAALAEEGAVPVLVQSL---TSSSNLAQENAADCIAT-LAASGEYFRLLIIQ---ERGLQRLMHLIQDST--  384 (579)
Q Consensus       314 nLs~~~~~~~~l~~~g~v~~Lv~lL---~~~~~~v~~~a~~~L~~-La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~--  384 (579)
                      -+-.+++....+.++ +.+.+-++|   +.-+.++...+...+.. .+..=..+...+.+   ...+.....+++..+  
T Consensus       525 ~fi~~~q~h~k~sah-Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~  603 (970)
T COG5656         525 FFIFNEQSHEKFSAH-VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT  603 (970)
T ss_pred             HHHhchhhhHHHHhh-hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            877766665555442 222233333   22233333333332221 11100001111111   111222223333331  


Q ss_pred             --CChHHHHHHHHHHHHcccc----hhHH---HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHH
Q 047123          385 --SSIVTVENALLAISSLSLS----DSAA---RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVAS  454 (579)
Q Consensus       385 --~~~~~~~~A~~aL~~L~~~----~~~~---~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~  454 (579)
                        ..++-+..|.+.|..+..-    +++.   +-++.  ...+..--.+.+.-.+.-.+|...+-+.+ .+.+....+..
T Consensus       604 ~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~--slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwg  681 (970)
T COG5656         604 SSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV--SLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWG  681 (970)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhH
Confidence              1123455566666655442    2222   22222  34455555567777788888888888877 44444433333


Q ss_pred             HHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          455 CMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       455 ~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      -.+.+.+++.+......-+...-+|.|+....
T Consensus       682 i~Ell~~~l~~~~t~~y~ee~~~al~nfityG  713 (970)
T COG5656         682 IFELLLNLLIDEITAVYSEEVADALDNFITYG  713 (970)
T ss_pred             HHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence            36666667733333455677778888887653

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.97  E-value=64  Score=36.10  Aligned_cols=196  Identities=11%  Similarity=0.044  Sum_probs=102.7

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhc----
Q 047123          248 GLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRS----GTALTQSHAVGAIRNIAA----  317 (579)
Q Consensus       248 ~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~----  317 (579)
                      .+..+.+++.++...-. .++..|..|...  .....      .+..+..++.+    .++.+...+..++..+..    
T Consensus       396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            45666677766533322 244555555421  22222      34666777764    345677777777766643    


Q ss_pred             Ch------hhHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC-CCC
Q 047123          318 VE------DIKAALAEEGAVPVLVQSLT----SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS-TSS  386 (579)
Q Consensus       318 ~~------~~~~~l~~~g~v~~Lv~lL~----~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~-~~~  386 (579)
                      ..      ......+....++.+...+.    .++..-+..++.+|+|+..           ...++.+..++... ..+
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence            21      11122223345566665554    4566778888899998854           23578888877776 333


Q ss_pred             hHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhc--CCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 047123          387 IVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR--GNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLME  464 (579)
Q Consensus       387 ~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~  464 (579)
                      ..++..|+.+|+.+.... ..       .+.+.|+.++.+  .+.++|..|..+|...-  |....     +..+...+.
T Consensus       538 ~~~R~~Ai~Alr~~~~~~-~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~--P~~~~-----l~~i~~~l~  602 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHC-PE-------KVREILLPIFMNTTEDPEVRIAAYLILMRCN--PSPSV-----LQRIAQSLW  602 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT--HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----HHH-----HHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhcC-cH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--CCHHH-----HHHHHHHHh
Confidence            578888888888775441 11       244456666644  46688888877766542  22110     555566664


Q ss_pred             CCCCHhHHHHHH
Q 047123          465 CPKPVGLQEAAT  476 (579)
Q Consensus       465 ~~~~~~v~~~a~  476 (579)
                      ..++..|.-...
T Consensus       603 ~E~~~QV~sfv~  614 (618)
T PF01347_consen  603 NEPSNQVASFVY  614 (618)
T ss_dssp             T-S-HHHHHHHH
T ss_pred             hCchHHHHHHHH
Confidence            455555554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.65  E-value=72  Score=35.53  Aligned_cols=130  Identities=15%  Similarity=0.005  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC
Q 047123          261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS  340 (579)
Q Consensus       261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~  340 (579)
                      ..+...++..+..+-..+..-. + -.|.+..++.-..+.+..++..++..|..+.....-....+-.+....+..-+.+
T Consensus        60 dRIl~fla~fv~sl~q~d~e~D-l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEED-L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhh-H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence            3455555666666554332222 1 1345566666666788899999999999888743333333334556666666778


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          341 SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       341 ~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      ..+.|+..|+.+|..+-.++.+     -+..++..+..+++.+++ ++++..|...|.
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS-~EVRRaaLsnI~  189 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPS-DEVRRAALSNIS  189 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCc-HHHHHHHHHhhc
Confidence            8899999999999998643211     013456777778877665 678877655443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.64  E-value=6.8  Score=34.67  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhc
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVS  234 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~  234 (579)
                      ...++.+..+|+++++.++..|+..|-.+++... .....|...+++..|++++. . .++.+++..+..|...+.
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~-~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN-DRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHH
Confidence            3468899999999999999999999988887444 45667889999999999998 5 789999999999988876

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.58  E-value=21  Score=38.50  Aligned_cols=107  Identities=12%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCh
Q 047123          371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISD  446 (579)
Q Consensus       371 g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~  446 (579)
                      |.+..+++.+++...  .++..++..|.-+... ......+-.  |.+..|.+-+-...+.|+.+|..+|+.+-   .++
T Consensus        91 ~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~l~N--~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          91 GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEVLAN--GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence            445555555555555  8899999999988877 556666666  78888888888889999999999999886   445


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123          447 GNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR  489 (579)
Q Consensus       447 ~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~  489 (579)
                      +++.     +..|+.+++++++.+||.   .||.|+..+...+
T Consensus       167 en~~-----~n~l~~~vqnDPS~EVRr---~allni~vdnsT~  201 (885)
T COG5218         167 ENRI-----VNLLKDIVQNDPSDEVRR---LALLNISVDNSTY  201 (885)
T ss_pred             HHHH-----HHHHHHHHhcCcHHHHHH---HHHHHeeeCCCcc
Confidence            5442     456777777888899988   4567776654443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=84.47  E-value=14  Score=40.73  Aligned_cols=252  Identities=11%  Similarity=0.106  Sum_probs=138.0

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      .+.-++..+.+.+..=...|.+..   +..-..++..-.++.|+..+. .++  .....+..+..+.. .-...+  .+.
T Consensus       259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~-~g~--a~~~~ltpl~k~~k-~ld~~e--yq~  329 (690)
T KOG1243|consen  259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE-FGD--AASDFLTPLFKLGK-DLDEEE--YQV  329 (690)
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh-ccc--cchhhhhHHHHhhh-hccccc--ccc
Confidence            344555666666666555555532   233344555566777777766 444  11111222222222 111111  566


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 047123          247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA  326 (579)
Q Consensus       247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~  326 (579)
                      +++|.|+++++..+..+|..-..-+.+...  .....+....+.+.+..-+.+.++.+++.++.++..|+.-=.-+  -.
T Consensus       330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L  405 (690)
T KOG1243|consen  330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL  405 (690)
T ss_pred             chhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence            789999999999988888755554444332  23345566678899999999999999999999988776521111  01


Q ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc-HHHHHHhhccCCCChHHHHHHHHHHHHcccchh
Q 047123          327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-LQRLMHLIQDSTSSIVTVENALLAISSLSLSDS  405 (579)
Q Consensus       327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~-i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~  405 (579)
                      ....+..+-++-.+.+..++.+..-||..++.....   .. +.+. +....+.+++.-.  ..+..+..+++..+..-.
T Consensus       406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~-R~~vL~~aftralkdpf~--paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SV-RKRVLASAFTRALKDPFV--PARKAGVLALAATQEYFD  479 (690)
T ss_pred             cHHHHHHHHhhCccccCcccccceeeecccccccch---hh-hccccchhhhhhhcCCCC--CchhhhhHHHhhcccccc
Confidence            111223333333344557888888888888764321   11 2232 3344444454443  567777777777666511


Q ss_pred             HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047123          406 AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG  440 (579)
Q Consensus       406 ~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~  440 (579)
                      ...+-.   .+++.+.-+.-+.+..++..|-.++.
T Consensus       480 ~~~va~---kIlp~l~pl~vd~e~~vr~~a~~~i~  511 (690)
T KOG1243|consen  480 QSEVAN---KILPSLVPLTVDPEKTVRDTAEKAIR  511 (690)
T ss_pred             hhhhhh---hccccccccccCcccchhhHHHHHHH
Confidence            111111   24444444444555555555544443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=84.14  E-value=6  Score=42.26  Aligned_cols=117  Identities=10%  Similarity=0.099  Sum_probs=69.9

Q ss_pred             CCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc-cCCCChHHHHHHHHHHHHcccchhH
Q 047123          329 GAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ-DSTSSIVTVENALLAISSLSLSDSA  406 (579)
Q Consensus       329 g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~~~~  406 (579)
                      |+|..++++ +++++++++..|+-+|.-.|..|.+         .+...+++|. +++.  .++...+-+|.-.|.+..-
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~--hVR~g~AvaLGiacag~G~  619 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNF--HVRAGVAVALGIACAGTGD  619 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccch--hhhhhhHHHhhhhhcCCcc
Confidence            455555555 4566777777777777777665533         2444444443 3333  6776666677666655100


Q ss_pred             HHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhc
Q 047123          407 ARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLM  463 (579)
Q Consensus       407 ~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL  463 (579)
                      +       -++..|-.+......-|++.|.-++.-+.  ++++....+..-+..+.+++
T Consensus       620 ~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI  671 (926)
T COG5116         620 K-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI  671 (926)
T ss_pred             H-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence            0       13333444566677778888887777776  77776665555566677766

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.90  E-value=6.3  Score=38.88  Aligned_cols=150  Identities=20%  Similarity=0.112  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHhhccCC--CChHHHHHHHHHHHHcccc-hhHHHHHhhcC-cHH
Q 047123          344 LAQENAADCIATLAASGEYFRLLIIQER--GLQRLMHLIQDST--SSIVTVENALLAISSLSLS-DSAARILSSTT-SFI  417 (579)
Q Consensus       344 ~v~~~a~~~L~~La~~~~~~r~~l~~~g--~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~-g~i  417 (579)
                      +-+--++..++-++... .....+...+  ....+..++....  ..+..+..+++++.|+-.. ..+..+..... .++
T Consensus        78 ~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~  156 (268)
T PF08324_consen   78 ESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL  156 (268)
T ss_dssp             CC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred             ccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence            33444555555444432 3333333322  2455555554443  3357888999999998887 55555555411 122


Q ss_pred             HHHHHHHhcC---CHHHHHHHHHHHHHhc--CChhh-HH-HHHHHHHHHHH-hccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123          418 IQLGEFIKRG---NVLLQQVSSSLLGNLS--ISDGN-KR-AVASCMGSLIK-LMECPKPVGLQEAATDAVLSLLTVRSNR  489 (579)
Q Consensus       418 ~~L~~lL~~~---~~~v~~~A~~aL~~L~--~~~~~-~~-~i~~~v~~Lv~-lL~~~~~~~v~~~a~~aL~~L~~~~~~~  489 (579)
                      ..+..+..+.   +..+|..++.++.|++  ..... -. .-.+.+..+++ +.....+.+....++-||++|...+...
T Consensus       157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence            2333322332   6789999999999998  11111 11 11111455555 4434468999999999999999766655


Q ss_pred             hHHHh
Q 047123          490 KELVR  494 (579)
Q Consensus       490 ~~~~~  494 (579)
                      ....+
T Consensus       237 ~~~~~  241 (268)
T PF08324_consen  237 KQLAK  241 (268)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            55553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=82.54  E-value=26  Score=39.69  Aligned_cols=194  Identities=14%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             HHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH--HHHHHHccCCH-
Q 047123          185 SLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG--PLLRILETGSM-  261 (579)
Q Consensus       185 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~-  261 (579)
                      .|.....+++++.+.+.+.|++..+...++.-...+.+..++..+.+++. ..+.+.......-+.  .+-..+...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~-~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE-VLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            77788899999999999999999999999833568889999999999998 655544433222222  34444444444 


Q ss_pred             HHHHHHHHHHHHhcCCCcc-HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHH-HHHHh-
Q 047123          262 PLKEKAAIGVEAITTDPEN-AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPV-LVQSL-  338 (579)
Q Consensus       262 ~v~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~-Lv~lL-  338 (579)
                      +.-..++.+|..+..+.+. .......-+-..+.+....                  .+.....+.-...+.+ +.+++ 
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~------------------~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISR------------------WLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhc------------------cCccceeehhhhhcchhHHHHhc
Confidence            7777888888887754332 0000001111222222111                  1111111111112222 33444 


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .+..+..+-.|++++.++...++.++..+.+.|+++.+...-.... -..+++.+...+-
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVIE  693 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHhh
Confidence            3456678899999999999888888888888888887766533322 1345555544443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=82.54  E-value=85  Score=34.78  Aligned_cols=159  Identities=11%  Similarity=0.027  Sum_probs=87.1

Q ss_pred             cHHHHHHHhcCC----CHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHH
Q 047123          289 GVSVLIEAFRSG----TALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLT----SSSNLAQENAADCIATL  356 (579)
Q Consensus       289 ~i~~Lv~ll~~~----~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~----~~~~~v~~~a~~~L~~L  356 (579)
                      .+..+..++.++    .+.++..+..++.++..    +.+.....+....++.+...+.    .++..-+...+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            457788888753    44566677766666542    2221111111234555555442    34455566677777776


Q ss_pred             hcCChhhHHHHHhcCcHHHHHHhhc-cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhc--CCHHHH
Q 047123          357 AASGEYFRLLIIQERGLQRLMHLIQ-DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKR--GNVLLQ  432 (579)
Q Consensus       357 a~~~~~~r~~l~~~g~i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~--~~~~v~  432 (579)
                      ...           ..+..+..++. ....+..++..|+.+|+.++.. +.         .+-+.|+.++.+  .++++|
T Consensus       474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---------~v~~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---------KVQEVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHcCCCCChHHH
Confidence            542           23455555555 3333457899999999987643 11         233445555543  467888


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHH
Q 047123          433 QVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEA  474 (579)
Q Consensus       433 ~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~  474 (579)
                      ..|..+|...--+...       +..+...+...++..|.-.
T Consensus       534 iaA~~~lm~t~P~~~~-------l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      534 MAAVLVLMETKPSVAL-------LQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             HHHHHHHHhcCCCHHH-------HHHHHHHHhhcCcHHHHHH
Confidence            8888777665322111       4455555534444555443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.45  E-value=72  Score=33.91  Aligned_cols=140  Identities=14%  Similarity=0.048  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHH
Q 047123          216 HHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWA-ISAYGGVSVL  293 (579)
Q Consensus       216 ~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~L  293 (579)
                      +++..++..|++.|++.+...|+-+..... -.+..++.-|.+ .+.+|+..+..+|..+.....+... ..-.++.-.+
T Consensus       269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  269 DPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL  347 (533)
T ss_pred             CchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence            566789999999999999843443333322 235555555554 4788888888888877743222211 1112344566


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHH---cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          294 IEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAE---EGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       294 v~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~---~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ..+..+.+++++.++......|+..  ...++.+.+   .+..| ++-.+.+.++.+ ..|++.....|.
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHH-HHHHHHHHHhcC
Confidence            6777888999999999888888763  333444443   22222 222345555544 345555555544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=81.86  E-value=11  Score=32.71  Aligned_cols=72  Identities=21%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChh-hHHHHHhhCcHHHHHHhhccC---CCHHHHHHHHHHHHHhhc
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDK-SAAVVAKEGNVGYLISLLDFH---HQSSIREQAVLALSIIVS  234 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~LL~~~---~~~~~~~~A~~aL~~La~  234 (579)
                      ..++.|-.+|+++++.++..|+..|-.+.+.... ....+....++..|++++. .   .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~-~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAK-NSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999988876554 6667777788999999997 4   468999999999988776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=81.82  E-value=19  Score=43.11  Aligned_cols=139  Identities=12%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHH
Q 047123          330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAA  407 (579)
Q Consensus       330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~  407 (579)
                      .+..++..+......+|..|+.||.++...|+..   +.....-..+.+-+.+.+  ..+|+.|+..++.....  +...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss--asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS--ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch--hHHHHHHHHHHhhhhhccHHHHH
Confidence            4566777778778899999999999999877652   112222223333233333  37999999998865544  2222


Q ss_pred             HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123          408 RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSL  482 (579)
Q Consensus       408 ~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L  482 (579)
                      .       +-.++.+-+.+....||..+.++++.++ ..|+.-.. .+....+++-. +++...++..+.+.+.++
T Consensus       892 q-------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~~cakmlrRv-~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  892 Q-------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VDMCAKMLRRV-NDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             H-------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Confidence            2       2333444455667788899999999998 55543322 22211222222 222334677777777776

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.78  E-value=11  Score=33.08  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHhhc
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDF-----HHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~-----~~~~~~~~~A~~aL~~La~  234 (579)
                      ..++.+..+|+++++.++..|+..|-.+.+. .+.....|...+++..|++++..     ..++.++...+..+..-+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999988888763 45567788899999999999961     2468999999988887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=81.75  E-value=10  Score=33.01  Aligned_cols=73  Identities=16%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCC--HHHHHHHHHHHHHhhc
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQ--SSIREQAVLALSIIVS  234 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~--~~~~~~A~~aL~~La~  234 (579)
                      ...++.+-.+|+++++.++..|+..|-.+.+. .+.....+...+++..|++++. ...  +.+++.++..+..-+.
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~-~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIK-PKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999888876 4566777889999999999998 543  3489999888887765

Unpublished observations. Domain of unknown function.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=81.59  E-value=16  Score=34.58  Aligned_cols=108  Identities=12%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---cCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHH
Q 047123          345 AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ---DSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFII  418 (579)
Q Consensus       345 v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~---~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~  418 (579)
                      -...++..|..+++.+ ..|..+.+....-.+..++.   +.+.-+.++..+.+++..|..+   .....+...  .+++
T Consensus       116 RvcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT--eivP  192 (315)
T COG5209         116 RVCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT--EIVP  192 (315)
T ss_pred             HHHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh--hHHH
Confidence            4455666677777754 55777777665434444443   3333357888999999999987   445566666  8999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123          419 QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC  455 (579)
Q Consensus       419 ~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~  455 (579)
                      .++.+++.++.--+.-|+.++..+-.++..-+++.+.
T Consensus       193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT  229 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQT  229 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            9999999999999999999999998888777777776

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=81.36  E-value=26  Score=38.70  Aligned_cols=234  Identities=14%  Similarity=0.106  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123          259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL  338 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL  338 (579)
                      .+.+-+..--.-|.+  ..+...+.++....++.|+..+..++.  -...+..+..+...-+...  ++.+.+|.+++++
T Consensus       266 ks~~eK~~Ff~~L~~--~l~~~pe~i~~~kvlp~Ll~~~~~g~a--~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF  339 (690)
T KOG1243|consen  266 KSVEEKQKFFSGLID--RLDNFPEEIIASKVLPILLAALEFGDA--ASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLF  339 (690)
T ss_pred             CcHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhcccc--chhhhhHHHHhhhhccccc--cccchhhhHHHHh
Confidence            344444444433333  123345567777778888888777761  1222222222222111111  6778999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHH
Q 047123          339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFII  418 (579)
Q Consensus       339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~  418 (579)
                      ...+..+|..-+.-+-+...   .....+++..+.+.+..-+.+.+.  .+++.++..+..|+..-+.+ .+..  ..+.
T Consensus       340 ~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~--~Lre~Tlksm~~La~kL~~~-~Ln~--Ellr  411 (690)
T KOG1243|consen  340 KSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNA--TLREQTLKSMAVLAPKLSKR-NLNG--ELLR  411 (690)
T ss_pred             cCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCH--HHHHHHHHHHHHHHhhhchh-hhcH--HHHH
Confidence            99998888776665555443   345567788889998888877776  89999999999888762222 2222  3556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 047123          419 QLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDE  496 (579)
Q Consensus       419 ~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~  496 (579)
                      .|..+-.+.+..++.+..-++..++.  .+..|+.+.  +-.+.+-+ .+....-|.++..+++......+.....   .
T Consensus       412 ~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL--~~aftral-kdpf~paR~a~v~~l~at~~~~~~~~va---~  485 (690)
T KOG1243|consen  412 YLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL--ASAFTRAL-KDPFVPARKAGVLALAATQEYFDQSEVA---N  485 (690)
T ss_pred             HHHhhCccccCcccccceeeecccccccchhhhcccc--chhhhhhh-cCCCCCchhhhhHHHhhcccccchhhhh---h
Confidence            66666566677888888888888872  333333222  33444445 3444556777777777766544332211   3


Q ss_pred             ccHHHHHhhcCCCchh
Q 047123          497 KSVMRLMQMLDPKNEA  512 (579)
Q Consensus       497 ~~i~~Lv~lL~~~~~~  512 (579)
                      ..++.++-+.-+.+..
T Consensus       486 kIlp~l~pl~vd~e~~  501 (690)
T KOG1243|consen  486 KILPSLVPLTVDPEKT  501 (690)
T ss_pred             hccccccccccCcccc
Confidence            4455566655555544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=81.07  E-value=8.5  Score=31.14  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      ....+..|++..+.+|..++..|+.+.....  ...+...+.+..+...|+ ++++-+=.+|+.+|..|+..++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHCh
Confidence            4566777888889999999999999987665  222234667788888999 9999999999999999998443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.41  E-value=53  Score=36.49  Aligned_cols=106  Identities=12%  Similarity=0.014  Sum_probs=73.0

Q ss_pred             HHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---Chhh
Q 047123          373 LQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI---SDGN  448 (579)
Q Consensus       373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~---~~~~  448 (579)
                      +..+++..++.+.  .++...+..|.-+... ..+..-+-.  +....+..-+.+..+.|+.+|..+|..+-.   ++++
T Consensus        87 f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~  162 (892)
T KOG2025|consen   87 FYHLLRGTESKDK--KVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC  162 (892)
T ss_pred             HHHHHhcccCcch--hHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence            3334444444444  7899999999988875 344444444  677777777888999999999999999972   2221


Q ss_pred             HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh
Q 047123          449 KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK  490 (579)
Q Consensus       449 ~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~  490 (579)
                      .     .+..+..+++++.+++||..   +|.|++-+...+.
T Consensus       163 ~-----v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp  196 (892)
T KOG2025|consen  163 P-----VVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLP  196 (892)
T ss_pred             c-----HHHHHHHHHhcCCcHHHHHH---HHHhhccCcccch
Confidence            1     16677788888899999985   5666665544433

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=80.18  E-value=25  Score=34.60  Aligned_cols=148  Identities=13%  Similarity=0.061  Sum_probs=89.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhH-HHHHhh
Q 047123          334 LVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSA-ARILSS  412 (579)
Q Consensus       334 Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~-~~l~~~  412 (579)
                      |=..|.++++.+|.+++.+|..+...-+.   ...+..-+..|+.++.+.-.+......++.++..|...... ..... 
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~-   79 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV-   79 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH-
Confidence            44567888999999999999987653322   12333346667666544332234555557777666643111 11111 


Q ss_pred             cCcHHHHHHHHH--hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123          413 TTSFIIQLGEFI--KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       413 ~~g~i~~L~~lL--~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~  487 (579)
                        ..+..+.+-.  ++.....|...-.++..+. ...+.-+.+... +..+++.++..+++.....+...+..+....+
T Consensus        80 --~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   80 --KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             --HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence              1233333221  2334466777777777777 333333445555 89999999777889888888888888876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	579
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-11

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPL 263
           G V  L+ LL     S ++++A  AL+ I S  DE+ K + + GG+  L+++L +    +
Sbjct: 44  GGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 102
Query: 264 KEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-- 320
           +++AA  +  I + P+ A  AI   GGV VL++   S  +  Q  A  A+ NIA+  D  
Sbjct: 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162
Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
           IK A+ + G V VLV+ LTS+ +  Q+ AA  +A +A+        I+   G++ L  L+
Sbjct: 163 IK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221
Query: 381 QDSTSSI 387
             + S +
Sbjct: 222 TSTDSEV 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	579
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-44
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-34
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-20
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-33
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-27
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-25
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-15
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-29
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-22
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-27
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-20
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-21
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-26
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-21
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-25
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-12
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-22
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-11
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  166 bits (421), Expect = 2e-44
 Identities = 74/445 (16%), Positives = 155/445 (34%), Gaps = 41/445 (9%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIRE 223
           I  +   L          A+ +L  LL   + +   V   G +  +++LL+         
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLA 158

Query: 224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI-TTDPENAW 282
                L I+   N ES+ I+   GG   L+ I+ T +          V  + +    N  
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSS 342
           AI   GG+  L       +     + +  +RN++  +        EG +  LVQ L S  
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDD 276

Query: 343 NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402
                 AA  ++ L  +    ++++ Q  G++ L+  +  +       E A+ A+  L+ 
Sbjct: 277 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

Query: 403 SDSAARILSST---TSFIIQLGEFIKRGNVLLQQVSS-SLLGNLSISDGNKRAVAS--CM 456
               A +  +       +  + + +   +      ++  L+ NL++   N   +     +
Sbjct: 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 396

Query: 457 GSLIKLMECPKPVGLQEAATD--------------------AVLSLLTVRSNRKELVRDE 496
             L++L+        +  +                        L +L    + + ++R  
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 456

Query: 497 KSVMRLMQMLDPKNEALNKKFPVMVTAAVLG--GGSNGCRKRLVAAGAYQHLQKLAETEV 554
            ++   +Q+L    E +       V A VL          + + A GA   L +L  +  
Sbjct: 457 NTIPLFVQLLYSPIENI-----QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 511

Query: 555 PGAKK----VLQRLAGNRLKNIFSR 575
            G       VL R++ ++ ++   R
Sbjct: 512 EGVATYAAAVLFRMSEDKPQDYKKR 536

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  153 bits (387), Expect = 8e-40
 Identities = 57/372 (15%), Positives = 129/372 (34%), Gaps = 10/372 (2%)

Query: 193 DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL 252
           + +  A +A    +  L  LL+      +  +A + +  +         I+     +  +
Sbjct: 4   NYQDDAELA-TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 253 LRILETGSMPLKEKAAIGV-EAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311
           +R ++  +     +   G    ++   E   AI   GG+  L++   S       +A+  
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 312 IRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE 370
           + N+    E  K A+   G +  +V  L  ++        DC+  LA   +  +L+I+  
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181

Query: 371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVL 430
            G Q L+++++  T   + +      +  LS+  S    +      +  LG  +   +  
Sbjct: 182 GGPQALVNIMRTYTYEKL-LWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQR 239

Query: 431 LQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK 490
           L Q     L NLS +   +  +   +G+L++L+       +   A   + +L       K
Sbjct: 240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNK 298

Query: 491 ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC---RKRLVAAGAYQHLQ 547
            +V     +  L++ +    +  +   P +     L          +  +        + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 548 KLAETEVPGAKK 559
           KL          
Sbjct: 359 KLLHPPSHWPLI 370

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  139 bits (352), Expect = 3e-35
 Identities = 67/412 (16%), Positives = 144/412 (34%), Gaps = 21/412 (5%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L         KA   + QL K +    A++     V  ++  +   +           L 
Sbjct: 23  LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 82

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW-AISAYGG 289
            + S + E    +F+ GG+  L+++L +    +   A   +  +    E A  A+   GG
Sbjct: 83  NL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLA-QE 347
           +  ++           +     ++ +A   ++ K  +   G    LV  + + +      
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201

Query: 348 NAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAA 407
             +  +  L+      +  I++  G+Q L   + D +  +  V+N L  + +LS + +  
Sbjct: 202 TTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRL--VQNCLWTLRNLSDAATKQ 258

Query: 408 RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-SDGNKRAVASCMG--SLIKLME 464
             +      ++QL   +   ++ +   ++ +L NL+  +  NK  V    G  +L++ + 
Sbjct: 259 EGMEGLLGTLVQL---LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 465 CPKP-VGLQEAATDAVLSLLTVRSNRKEL----VRDEKSVMRLMQMLDPKNEALNKKFPV 519
                  + E A  A L  LT R    E+    VR    +  ++++L P +     K   
Sbjct: 316 RAGDREDITEPAICA-LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK--A 372

Query: 520 MVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKN 571
            V               L   GA   L +L        ++        +   
Sbjct: 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  118 bits (296), Expect = 5e-28
 Identities = 50/320 (15%), Positives = 116/320 (36%), Gaps = 14/320 (4%)

Query: 235 ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI-SAYGGVSVL 293
            N +    +     +  L ++L      +  KAA+ V  ++    +  AI  +   VS +
Sbjct: 3   INYQDDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 294 IEAFRSGTAL-TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
           +   ++   + T     G + N++   +   A+ + G +P LV+ L S  +     A   
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 353 IATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSS 412
           +  L    E  ++ +    GLQ+++ L+  +      +      +  L+  +  ++++  
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF--LAITTDCLQILAYGNQESKLIIL 179

Query: 413 TTSFIIQLGEFIKRGNVLLQQVSSS-LLGNLSISDGNKRAVASC--MGSLIKLMECPKPV 469
            +     L   ++         ++S +L  LS+   NK A+     M +L   +  P   
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239

Query: 470 GLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG 529
            +Q       L  L+      +    E  +  L+Q+L   +  +          + L   
Sbjct: 240 LVQNCL--WTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINV--VTCAAGILSNLTCN 293

Query: 530 SNGCRKRLVAAGAYQHLQKL 549
           +   +  +   G  + L + 
Sbjct: 294 NYKNKMMVCQVGGIEALVRT 313

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 93.8 bits (233), Expect = 3e-20
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 28/264 (10%)

Query: 182 ALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241
           AL  L    ++ + +   V     +  ++ LL          +A + L   ++    +  
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHA 388

Query: 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEA----------------------ITTDPE 279
            + E+G +  L+++L       + + ++G                         +  D  
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448

Query: 280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339
           N   I     + + ++   S     Q  A G +  +A  ++   A+  EGA   L + L 
Sbjct: 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 508

Query: 340 SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS 399
           S +      AA  +  ++           ++R    L   +  +       E A L +  
Sbjct: 509 SRNEGVATYAAAVLFRMSEDKP----QDYKKRLSVELTSSLFRTEPMAWN-ETADLGLDI 563

Query: 400 LSLSDSAARILSSTTSFIIQLGEF 423
            +  +         +      G +
Sbjct: 564 GAQGEPLGYRQDDPSYRSFHSGGY 587

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  158 bits (402), Expect = 2e-42
 Identities = 73/431 (16%), Positives = 148/431 (34%), Gaps = 47/431 (10%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L          A+ +L  LL   + +   V   G +  +++LL+              L 
Sbjct: 110 LGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQ 168

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI-TTDPENAWAISAYGG 289
           I+   N ES+ I+   GG   L+ I+ T +          V  + +    N  AI   GG
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENA 349
           +  L       +     + +  +RN++  +        EG +  LVQ L S        A
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCA 286

Query: 350 ADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI 409
           A  ++ L  +    ++++ Q  G++ L+  +  +       E A+ A+  L+     A +
Sbjct: 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346

Query: 410 LSSTTSFIIQLG------EFIKRGNVL-LQQVSSSLLGNLSISDGNKRAV--ASCMGSLI 460
                + +          + +   +   L + +  L+ NL++   N   +     +  L+
Sbjct: 347 ---AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403

Query: 461 KLMECPKPVGLQEAATD--------------------AVLSLLTVRSNRKELVRDEKSVM 500
           +L+        +  +                        L +L    + + ++R   ++ 
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 501 RLMQMLDPKNEALNKKFPVMVTAAVLG--GGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558
             +Q+L    E +       V A VL          + + A GA   L +L  +   G  
Sbjct: 464 LFVQLLYSPIENI-----QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518

Query: 559 K----VLQRLA 565
                VL R++
Sbjct: 519 TYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  149 bits (377), Expect = 5e-39
 Identities = 57/372 (15%), Positives = 129/372 (34%), Gaps = 10/372 (2%)

Query: 193 DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL 252
           + +  A +A    +  L  LL+      +  +A + +  +         I+     +  +
Sbjct: 7   NYQDDAELA-TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 253 LRILETGSMPLKEKAAIGV-EAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311
           +R ++  +     +   G    ++   E   AI   GG+  L++   S       +A+  
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 312 IRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE 370
           + N+    E  K A+   G +  +V  L  ++        DC+  LA   +  +L+I+  
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVL 430
            G Q L+++++  T   + +      +  LS+  S    +      +  LG  +   +  
Sbjct: 185 GGPQALVNIMRTYTYEKL-LWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQR 242

Query: 431 LQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK 490
           L Q     L NLS +   +  +   +G+L++L+       +   A   + +L       K
Sbjct: 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNK 301

Query: 491 ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC---RKRLVAAGAYQHLQ 547
            +V     +  L++ +    +  +   P +     L          +  +        + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 548 KLAETEVPGAKK 559
           KL          
Sbjct: 362 KLLHPPSHWPLI 373

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  134 bits (338), Expect = 9e-34
 Identities = 64/410 (15%), Positives = 143/410 (34%), Gaps = 19/410 (4%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L         KA   + QL K +    A++     V  ++  +   +           L 
Sbjct: 26  LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW-AISAYGG 289
            + S + E    +F+ GG+  L+++L +    +   A   +  +    E A  A+   GG
Sbjct: 86  NL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLA-QE 347
           +  ++           +     ++ +A   ++ K  +   G    LV  + + +      
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 348 NAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAA 407
             +  +  L+      +  I++  G+Q L   + D +  +  V+N L  + +LS + +  
Sbjct: 205 TTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRL--VQNCLWTLRNLSDAATKQ 261

Query: 408 RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-SDGNKRAVASCMG--SLIKLME 464
             +      +  L + +   ++ +   ++ +L NL+  +  NK  V    G  +L++ + 
Sbjct: 262 EGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 465 CPKPVGLQEAATDAVLSLLTVRSNRKEL----VRDEKSVMRLMQMLDPKNEALNKKFPVM 520
                          L  LT R    E+    VR    +  ++++L P +     K  V 
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 521 VTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLK 570
           +   +    +N     L   GA   L +L        ++        +  
Sbjct: 379 LIRNLALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  116 bits (293), Expect = 6e-28
 Identities = 51/332 (15%), Positives = 120/332 (36%), Gaps = 13/332 (3%)

Query: 232 IVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI-SAYGGV 290
           +V+  +           +  L ++L      +  KAA+ V  ++    +  AI  +   V
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 291 SVLIEAFRSGTAL-TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENA 349
           S ++   ++   + T     G + N++   +   A+ + G +P LV+ L S  +     A
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 350 ADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI 409
              +  L    E  ++ +    GLQ+++ L+  + +++  +      +  L+  +  +++
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--NKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 410 LSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP 466
           +   +     L   ++      L   +S +L  LS+   NK A+     M +L   +  P
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 467 KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526
               +Q       L  L+      +    E  +  L+Q+L   +  +          + L
Sbjct: 240 SQRLVQNCL--WTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINV--VTCAAGILSNL 293

Query: 527 GGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558
              +   +  +   G  + L +          
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  136 bits (344), Expect = 6e-34
 Identities = 63/400 (15%), Positives = 140/400 (35%), Gaps = 19/400 (4%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L         KA   + QL K +    A++     V  ++  +   +           L 
Sbjct: 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLH 218

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW-AISAYGG 289
            + S + E    +F+ GG+  L+ +L +    +   A   +  +    E A  A+   GG
Sbjct: 219 NL-SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGG 277

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQEN 348
           +  ++           +     ++ +A   ++ K  +   G    LV  + + +      
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337

Query: 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR 408
               +  + +     +  I++  G+Q L   + D +  +  V+N L  + +LS + +   
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQNCLWTLRNLSDAATKQE 395

Query: 409 ILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMEC--- 465
            +      ++QL   +   ++ +   ++ +L NL+ ++   + +   +G +  L+     
Sbjct: 396 GMEGLLGTLVQL---LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452

Query: 466 -PKPVGLQEAATDAVLSLLTVRSNRKEL----VRDEKSVMRLMQMLDPKNEALNKKFPVM 520
                 + E A  A L  LT R    E+    VR    +  ++++L P +     K    
Sbjct: 453 AGDREDITEPAICA-LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK--AT 509

Query: 521 VTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKV 560
           V               L   GA   L +L        ++ 
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 549

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  116 bits (292), Expect = 2e-27
 Identities = 49/342 (14%), Positives = 118/342 (34%), Gaps = 13/342 (3%)

Query: 222 REQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPEN 280
            E + +    +V+  +           +  L ++L      +  KAA+ V  ++  +   
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184

Query: 281 AWAISAYGGVSVLIEAFRSGT-ALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339
              + +   VS ++   ++     T     G + N++   +   A+ + G +P LV  L 
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG 244

Query: 340 SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS 399
           S  +    +A   +  L    E  ++ +    GLQ+++ L+  +      +      +  
Sbjct: 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF--LAITTDCLQI 302

Query: 400 LSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS-LLGNLSISDGNKRAVASC--M 456
           L+  +  ++++   +     L   ++         ++S +L  LS+   NK A+     M
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKK 516
            +L   +  P    +Q       L  L+      +    E  +  L+Q+L   +  +   
Sbjct: 363 QALGLHLTDPSQRLVQNCL--WTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINV--V 416

Query: 517 FPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558
                  + L   +   +  +   G  + L +          
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  116 bits (292), Expect = 2e-27
 Identities = 53/355 (14%), Positives = 119/355 (33%), Gaps = 37/355 (10%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           ++    E        +L++L     +   + + G +  L   L       + +  +  L 
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLR 385

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGG 289
            +   +D + K    EG LG L+++L +  + +   AA  +  +T  + +N   +   GG
Sbjct: 386 NL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442

Query: 290 VSVLIEAFRSGT--ALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLTSSSN 343
           +  L+               A+ A+R++ +     E  + A+     +PV+V+ L   S+
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502

Query: 344 LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403
                A   +    A        + ++  + RL+ L+  +           +  +     
Sbjct: 503 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR--RTSMGGTQQQFV 560

Query: 404 DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMG--SLIK 461
           +                          + +  +  L  L+    N+  +         ++
Sbjct: 561 EGVR--------------------MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQ 600

Query: 462 LMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKK 516
           L+  P     + AA   VL  L       E +  E +   L ++L  +NE +   
Sbjct: 601 LLYSPIENIQRVAA--GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 93.6 bits (232), Expect = 5e-20
 Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 28/249 (11%)

Query: 182 ALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241
           AL  L    +D + +   V     +  ++ LL          +A + L   ++    +  
Sbjct: 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHA 524

Query: 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEA----------------------ITTDPE 279
            + E+G +  L+++L       + + ++G                         +  D  
Sbjct: 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH 584

Query: 280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339
           N   I     + + ++   S     Q  A G +  +A  ++   A+  EGA   L + L 
Sbjct: 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 644

Query: 340 SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS 399
           S +      AA  +  ++           ++R    L   +  +       E   L +  
Sbjct: 645 SRNEGVATYAAAVLFRMSEDKP----QDYKKRLSVELTSSLFRTEPMTWN-ETGDLGLDI 699

Query: 400 LSLSDSAAR 408
            +  +    
Sbjct: 700 GAQGEPLGY 708

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  125 bits (317), Expect = 6e-33
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 5/233 (2%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L    ++ +  A     Q+L D ++    V   G +  L+ LL       I ++A+ ALS
Sbjct: 21  LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALS 79

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGG 289
            I S  +E  + V + G L  L+++L + +  + ++A   +  I +   E   A+   G 
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQEN 348
           +  L++   S        A+ A+ NIA+   +   A+ + GA+P LVQ L+S +    + 
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199

Query: 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401
           A   ++ +A+ G   +  + +   L++L  L       I   + A  A+  L 
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI--QKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  110 bits (276), Expect = 2e-27
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238
            ++AL +L  +    ++    V   G +  L+ LL       I ++A+ ALS I S  +E
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNE 129

Query: 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAF 297
             + V + G L  L+++L + +  + ++A   +  I +   E   A+   G +  L++  
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 298 RSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
            S        A+ A+ NIA+   + K A+ E GA+  L Q  +  +   Q+ A + +  L
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

Query: 357 AA 358
            +
Sbjct: 250 QS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  104 bits (262), Expect = 2e-25
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 10/242 (4%)

Query: 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQ 305
             L  + + L +  M  +  A      I +D  E   A+   G +  L++   S      
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 306 SHAVGAIRNIAAVEDI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR 364
             A+ A+ NIA+  +    A+ + GA+P LVQ L+S +    + A   ++ +A+ G    
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 365 LLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQ-LGEF 423
             +I    L  L+ L+      I  ++ AL A+S+++ S    +I +   +  +  L + 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIA-SGGNEQIQAVIDAGALPALVQL 188

Query: 424 IKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMG--SLIKLMECPKPVGLQEAATDAVL 480
           +   N  + Q +   L N++   +  K+AV        L +L        +Q+ A +A+ 
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALE 247

Query: 481 SL 482
            L
Sbjct: 248 KL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 73.5 bits (181), Expect = 8e-15
 Identities = 51/263 (19%), Positives = 106/263 (40%), Gaps = 18/263 (6%)

Query: 318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLM 377
           +            +P + Q L S     Q +A    + + + G      +I    L  L+
Sbjct: 1   MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60

Query: 378 HLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS 437
            L+      I  ++ AL A+S+++   +           +  L + +   N  + Q +  
Sbjct: 61  QLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118

Query: 438 LLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVR 494
            L N++   +   +AV     + +L++L+  P    LQEA   A+ ++ +  + + + V 
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW-ALSNIASGGNEQIQAVI 177

Query: 495 DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG---GGSNGCRKRLVAAGAYQHLQKLAE 551
           D  ++  L+Q+L   NE +     +      L     G N  ++ +  AGA + L++L  
Sbjct: 178 DAGALPALVQLLSSPNEQI-----LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232

Query: 552 TEVPGAKKVLQRLAGNRLKNIFS 574
            E     + +Q+ A   L+ + S
Sbjct: 233 HE----NEKIQKEAQEALEKLQS 251

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  121 bits (304), Expect = 1e-29
 Identities = 54/339 (15%), Positives = 119/339 (35%), Gaps = 13/339 (3%)

Query: 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA 235
              + ++   L  +   +     +V + G V   I LL       ++EQAV AL  I   
Sbjct: 79  CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGD 137

Query: 236 NDESRKIVFEEGGLGPLLRIL-ETGSMPLKEKAAIGVEAITTDPEN-AWAISAYGGVSVL 293
           +   R  V +   L PLL++  +   + +   A   +  +                ++VL
Sbjct: 138 STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL 197

Query: 294 IEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
                       + A  A+  ++    D   A+ + G    LV+ L  +       A   
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257

Query: 353 IATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSS 412
           +  +    +    +I+    LQ L+HL+     SI   + A   IS+++  + A      
Sbjct: 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI--KKEACWTISNITAGNRAQIQTVI 315

Query: 413 TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV----ASCMGSLIKLMECPKP 468
             +    L   ++      ++ ++  + N +     ++        C+  L  L+     
Sbjct: 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS 375

Query: 469 VGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD 507
             + + A + + ++L  R   +E  R+   +     +++
Sbjct: 376 -KIVQVALNGLENIL--RLGEQEAKRNGTGINPYCALIE 411

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  106 bits (267), Expect = 6e-25
 Identities = 52/298 (17%), Positives = 109/298 (36%), Gaps = 6/298 (2%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L     + +++A+ +L  +  D       V     +  L+ L    ++ ++   AV ALS
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISAYGG 289
            +        +       L  L  +L      +   A   +  ++  P +   A+   G 
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQEN 348
              L+E          S A+ A+ NI   +D     +    A+  L+  L+S     ++ 
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295

Query: 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR 408
           A   I+ + A        +I       L+ ++Q +       + A  AI++ +   SA +
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT--RKEAAWAITNATSGGSAEQ 353

Query: 409 ILSSTTSFIIQ-LGEFIKRGNVLLQQVSSSLLGN-LSISDGNKRAVASCMGSLIKLME 464
           I        I+ L + +   +  + QV+ + L N L + +   +   + +     L+E
Sbjct: 354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIE 411

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 98.8 bits (246), Expect = 3e-22
 Identities = 50/292 (17%), Positives = 100/292 (34%), Gaps = 13/292 (4%)

Query: 276 TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED---IKAALAEEGAVP 332
               N          S +IE   S +   Q  A    R + + E    I   ++  G V 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 333 VLVQSLTSSSNLA-QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE 391
             V+ L    N   Q  +A  +  +A+       ++IQ   +   + L+      +   E
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV--QE 125

Query: 392 NALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKR 450
            A+ A+ +++   +  R      + +  L +   + N + + + +   L NL        
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 451 AVASCMG---SLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD 507
             A        L  L+       L +A   A+  L    +++ + V D     RL+++L 
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACW-ALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244

Query: 508 PKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK 559
             +  +    P +     +  G +   + ++   A Q L  L  +     KK
Sbjct: 245 HNDYKV--VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 8/263 (3%)

Query: 310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE--YFRLLI 367
           GA+    A  +             +++ + S S   Q +A      L +         +I
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 368 IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG 427
                + R +  ++   +  +  E +   +++++  +S    +      +    E +   
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFE-SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE 119

Query: 428 NVLLQQVSSSLLGNLSISDGNKRAVASCMG---SLIKLMECPKPVGLQEAATDAVLSLLT 484
              +Q+ +   LGN++      R           L++L      + +   A  A+ +L  
Sbjct: 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179

Query: 485 VRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQ 544
            +S   E  +    +  L  +L   +  +          + L  G N   + ++ AG  +
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDV--LADACWALSYLSDGPNDKIQAVIDAGVCR 237

Query: 545 HLQKLAETEVPGAKKVLQRLAGN 567
            L +L             R  GN
Sbjct: 238 RLVELLMHNDYKVVSPALRAVGN 260

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  110 bits (278), Expect = 4e-28
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 3/190 (1%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
           L     +  + AL  L Q+    ++    V   G +  L+ LL       I ++A+ ALS
Sbjct: 21  LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALS 79

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGG 289
            I S  +E  + V + G L  L+++L + +  + ++A   +  I +   E   A+   G 
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQEN 348
           +  L++   S        A+ A+ NIA+   + K A+ E GA+  L Q  +  +   Q+ 
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199

Query: 349 AADCIATLAA 358
           A + +  L +
Sbjct: 200 AQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 4/208 (1%)

Query: 238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEA 296
            S         L  +++ L +      + A   +  I +   E   A+   G +  L++ 
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 297 FRSGTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT 355
             S        A+ A+ NIA+  +    A+ + GA+P LVQ L+S +    + A   ++ 
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTS 415
           +A+ G      +I    L  L+ L+      I  ++ AL A+S+++   +  +       
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAG 180

Query: 416 FIIQLGEFIKRGNVLLQQVSSSLLGNLS 443
            + +L +     N  +Q+ +   L  L 
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  113 bits (283), Expect = 9e-27
 Identities = 52/355 (14%), Positives = 120/355 (33%), Gaps = 21/355 (5%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238
           + ++  +L  +     +    V   G +   ISLL     + I EQAV AL  I      
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSA 176

Query: 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT------DPENAWAISAYGGVSV 292
            R +V + G + PLL +L    +       +     T               +    +  
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236

Query: 293 LIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAAD 351
           L+           + +  AI  +     +    + ++G VP LV+ L ++       A  
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILS 411
            I  +    +     +I    L     L+ +  ++I   + A   +S+++          
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI--QKEATWTMSNITAGRQDQIQQV 354

Query: 412 STTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV----ASCMGSLIKLMECPK 467
                +  L   + + +   Q+ ++  + N +     ++ V       +  L+ L+    
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414

Query: 468 PVGLQEAATDAVLSLLTVRSNRKE------LVRDEKSVMRLMQMLDPKNEALNKK 516
              + +   DA+ ++        E      ++ +   + ++  +   +NE++ K 
Sbjct: 415 T-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 468

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 93.9 bits (233), Expect = 2e-20
 Identities = 52/355 (14%), Positives = 124/355 (34%), Gaps = 13/355 (3%)

Query: 223 EQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN-- 280
              +       +  D           +  +++ + + ++  + +A      + +  +   
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92

Query: 281 AWAISAYGGVSVLIEAF-RSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSL 338
              I   G +   +    ++  +  Q  +  A+ NIA+   +   A+ + GA+P  +  L
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152

Query: 339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD---STSSIVTVENALL 395
            S      E A   +  +A  G  FR L+I+   +  L+ L+     ST +   + N   
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 396 AISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV--- 452
            +S+L  + + A  L +    +  L   +   +  +   S   +  L+     +  +   
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272

Query: 453 ASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA 512
              +  L+KL+   +   +   A  A+ +++T    + + V D  ++     +L      
Sbjct: 273 KGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 331

Query: 513 LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGN 567
           + K      T + +  G     +++V  G    L  +        +K       N
Sbjct: 332 IQK--EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238
              AL ++  ++   D+    V   G +    SLL  + +++I+++A   +S I +   +
Sbjct: 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 349

Query: 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEA 296
             + V   G +  L+ +L       +++AA  +   T+    E    +   G +  L+  
Sbjct: 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409

Query: 297 FRSGTALTQSHAVGAIRNIAAV-------EDIKAALAEEGAVPVLVQSLTSSSNLAQENA 349
             +         + AI NI          E +   + E G +  +       +    + +
Sbjct: 410 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 469

Query: 350 ADCIATLAASGE 361
            + I    +  E
Sbjct: 470 LNLIEKYFSVEE 481

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  110 bits (276), Expect = 5e-26
 Identities = 54/310 (17%), Positives = 121/310 (39%), Gaps = 26/310 (8%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQS---- 219
           +      +          A+  L++L  D++   A+  + G +  +  LL    +     
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM-NELGGLQAIAELLQVDCEMYGLT 208

Query: 220 ------SIREQAVLALSIIVSANDESRK-IVFEEGGLGPLLRILETGSMPLKEKA--AIG 270
                 ++R  A +AL+ +   +  ++  +   +G +  L+  L++ S  L++     + 
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 271 VEAITTDPENAWAISAYGGVSVLIEAFRSGTAL-TQSHAVGAIRNIAAV--EDIKAALAE 327
             +   D  +   +   G V  L+E         T    + A+ N++A   E+     A 
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328

Query: 328 EGAVPVLVQSLT----SSSNLAQENAADCIATL---AASGEYFRLLIIQERGLQRLMHLI 380
           +GA+  LV +LT    +++    E+    +  +    A+ E  R ++ +   LQ L+  +
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388

Query: 381 QDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440
           +  + +IV   NA   + +LS  +   +        +  L   I   + ++   S++ L 
Sbjct: 389 KSHSLTIV--SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446

Query: 441 NLSISDGNKR 450
           NL  +   K 
Sbjct: 447 NLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 96.2 bits (239), Expect = 2e-21
 Identities = 68/437 (15%), Positives = 140/437 (32%), Gaps = 61/437 (13%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSS---------- 220
           L + G   K     +LL +    D   ++  + G +  LI LL  + + S          
Sbjct: 38  LSMLGTHDKDDMSRTLLAMSSSQDSCISMR-QSGCLPLLIQLLHGNDKDSVLLGNSRGSK 96

Query: 221 -IREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE 279
             R +A  AL  I+ +  + ++   E   L  L +I                     +  
Sbjct: 97  EARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAY-----------------CETC 139

Query: 280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339
             W  +   G+        +        AV  +  ++  E+ + A+ E G +  + + L 
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 199

Query: 340 SSSNLA-----------QENAADCIATLAASGEYFRLLIIQERG-LQRLMHLIQDSTSSI 387
               +            +  A   +  L       +  +   +G ++ L+  ++  +  +
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 259

Query: 388 VTVENALLAISSLSL-SDSAARILSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLSI- 444
              +     + +LS  +D  ++        +  L E           +   S L NLS  
Sbjct: 260 --QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 445 SDGNKRAVASCMG---SLIKLMECPKPVGLQEAATDA------VLSLLTVRSNRKELVRD 495
              NK  + +  G    L+  +                     V SL+    + ++++R+
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377

Query: 496 EKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP 555
              +  L+Q L  K+ +L        T   L   +   ++ L   GA   L+ L  ++  
Sbjct: 378 NNCLQTLLQHL--KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 435

Query: 556 GAKK----VLQRLAGNR 568
                    L+ L  NR
Sbjct: 436 MIAMGSAAALRNLMANR 452

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  110 bits (277), Expect = 6e-26
 Identities = 57/325 (17%), Positives = 117/325 (36%), Gaps = 14/325 (4%)

Query: 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
             + +A  +L  +         VV     V   I LL       ++EQA+ AL  +   +
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDS 204

Query: 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKA--AIGVEAITTDPENAWAISAYGGVSVLI 294
            + R  V +   + P+L +  +    L   A   +        P+  W++ +   +  L 
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS-QALPTLA 263

Query: 295 EAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCI 353
           +   S    T   A  AI  ++   ++   A+ +      LV+ L+  S L Q  A   +
Sbjct: 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323

Query: 354 ATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSST 413
             +    +    ++I    L  L  L+     +I   + A   IS+++  ++        
Sbjct: 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNITAGNTEQIQAVID 381

Query: 414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS------CMGSLIKLMECPK 467
            + I  L + ++      ++ +   + N S     +  +        C+  L  L+E   
Sbjct: 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441

Query: 468 PVGLQEAATDAVLSLLTVRSNRKEL 492
              + E   DA+ ++L +    KE 
Sbjct: 442 NR-IIEVTLDALENILKMGEADKEA 465

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 95.1 bits (236), Expect = 7e-21
 Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 12/348 (3%)

Query: 219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP 278
               + A        S + + +     +  L  + + L +  M  +  A +    I +  
Sbjct: 59  IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 279 ENAW--AISAYGGVSVLIEAFRSGTALT-QSHAVGAIRNIAAV-EDIKAALAEEGAVPVL 334
                  +   G V  L+E  R       Q  A  A+ NIA+        + +  AVP+ 
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 335 VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394
           +Q L + S   +E A   +  +A     +R  ++Q   ++ ++ L   +  S+  +  A 
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL--IRTAT 236

Query: 395 LAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV-- 452
             +S+L          S  +  +  L + I   +      +   +  LS           
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296

Query: 453 -ASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE 511
                  L++L+     + +Q  A  AV +++T    + ++V +   +  L  +L    E
Sbjct: 297 DVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355

Query: 512 ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK 559
            + K      T + +  G+    + ++ A     L KL E      KK
Sbjct: 356 NIKK--EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 32/191 (16%), Positives = 73/191 (38%), Gaps = 17/191 (8%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238
           +  AL ++  ++  +D    VV   G +  L  LL    + +I+++A   +S I + N E
Sbjct: 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 374

Query: 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT----DPENAWAISAYGGVSVLI 294
             + V +   + PL+++LE      K++A   +   ++     P+    + + G +  L 
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434

Query: 295 EAFRSGTALTQSHAVGAIRNIAAVED------------IKAALAEEGAVPVLVQSLTSSS 342
           +             + A+ NI  + +                + + G +  +     + +
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494

Query: 343 NLAQENAADCI 353
           +   E A   I
Sbjct: 495 DKIYEKAYKII 505

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  106 bits (267), Expect = 2e-25
 Identities = 55/309 (17%), Positives = 122/309 (39%), Gaps = 26/309 (8%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ----------SS 220
           +          A+  L++L  D++     + + G +  +  LL    +           +
Sbjct: 41  MPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 99

Query: 221 IREQAVLALSIIVSANDESRK-IVFEEGGLGPLLRILETGSMPLKEKA--AIGVEAITTD 277
           +R  A +AL+ +   +  ++  +   +G +  L+  L++ S  L++     +   +   D
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159

Query: 278 PENAWAISAYGGVSVLIEAFRSGT-ALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVL 334
             +   +   G V  L+E         T    + A+ N++A   E+     A +GA+  L
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219

Query: 335 VQSLT----SSSNLAQENAADCIATL---AASGEYFRLLIIQERGLQRLMHLIQDSTSSI 387
           V +LT    +++    E+    +  +    A+ E  R ++ +   LQ L+  ++  + +I
Sbjct: 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279

Query: 388 VTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDG 447
             V NA   + +LS  +   +        +  L   I   + ++   S++ L NL  +  
Sbjct: 280 --VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337

Query: 448 NKRAVASCM 456
            K   A+ M
Sbjct: 338 AKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 96.8 bits (241), Expect = 5e-22
 Identities = 45/323 (13%), Positives = 113/323 (34%), Gaps = 31/323 (9%)

Query: 222 REQAVLAL--SIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE 279
               +L L   I              E G+      +          A   +  ++ D E
Sbjct: 5   HHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 280 NAWAISAYGGVSVLIEAFRSGTAL-----------TQSHAVGAIRNIAA--VEDIKAALA 326
           +  A++  GG+  + E  +    +            + +A  A+ N+    V +     +
Sbjct: 65  HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124

Query: 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAA-SGEYFRLLIIQERGLQRLMHLIQDSTS 385
            +G +  LV  L S S   Q+  A  +  L+  +    +  + +   ++ LM    +   
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184

Query: 386 SIVTVENALLAISSLSLSDSAARILSSTTSFIIQ-----LGEFIKRGNVLLQQVSSSLLG 440
               +++ L A+ +LS   +  +         +      L    +   + + +    +L 
Sbjct: 185 EST-LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 441 NLS----ISDGNKRAVASCMG--SLIKLMECPKPVGLQEAATDAVLSLLTVRSNR-KELV 493
           N+S     ++ +++ +       +L++ ++      +  A     L  L+ R+ + +E +
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC--GTLWNLSARNPKDQEAL 301

Query: 494 RDEKSVMRLMQMLDPKNEALNKK 516
            D  +V  L  ++  K++ +   
Sbjct: 302 WDMGAVSMLKNLIHSKHKMIAMG 324

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 47/321 (14%), Positives = 103/321 (32%), Gaps = 32/321 (9%)

Query: 276 TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLV 335
            +    W  +   G+        +        AV  +  ++  E+ + A+ E G +  + 
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79

Query: 336 QSLTSSSNLA-----------QENAADCIATLAASGEYFRLLIIQERG-LQRLMHLIQDS 383
           + L     +            +  A   +  L       +  +   +G ++ L+  ++  
Sbjct: 80  ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139

Query: 384 TSSIVTVENALLAISSLSL-SDSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGN 441
           +  +   +     + +LS  +D  ++        +  L E           +   S L N
Sbjct: 140 SEDL--QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197

Query: 442 LSI-SDGNKRAVASCMG---SLIKLMECPKPVGLQEAATDA------VLSLLTVRSNRKE 491
           LS     NK  + +  G    L+  +                     V SL+    + ++
Sbjct: 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257

Query: 492 LVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAE 551
           ++R+   +  L+Q L  K+ +L        T   L   +   ++ L   GA   L+ L  
Sbjct: 258 ILRENNCLQTLLQHL--KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315

Query: 552 TEVPGAKK----VLQRLAGNR 568
           ++           L+ L  NR
Sbjct: 316 SKHKMIAMGSAAALRNLMANR 336

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 11/152 (7%)

Query: 192 DDDKSAAVVAKEGNVGYLISLLDFHHQSS---IREQAVLAL---SIIVSANDESRKIVFE 245
             +  A + A +G + +L+  L +  Q++   I E     L   S +++ N++ R+I+ E
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261

Query: 246 EGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALT 304
              L  LL+ L++ S+ +   A   +  ++  +P++  A+   G VS+L     S   + 
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321

Query: 305 QSHAVGAIRNIAA----VEDIKAALAEEGAVP 332
              +  A+RN+ A           ++   ++P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  109 bits (272), Expect = 4e-25
 Identities = 48/401 (11%), Positives = 141/401 (35%), Gaps = 19/401 (4%)

Query: 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
           + ++ A + L  L  D +    ++  + ++  L+ L       S     V     + +A 
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNAY 452

Query: 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEA 296
           ++   +         ++ + +     + E+  +         +    ++  G  + L   
Sbjct: 453 EKQEMLP-------EMIELAKFAKQHIPEEHELDDVDFIN--KRITVLANEGITTALCAL 503

Query: 297 FRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
            ++ +  +Q      +  +  +++++  + +EG V  L++     +   + +A   +A +
Sbjct: 504 AKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563

Query: 357 AASGEYFRLL--IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTT 414
             +               ++ L++L+     + +    +L+A+++L+  + + R      
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLL-QQDCTALENFESLMALTNLASMNESVRQRIIKE 622

Query: 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS---CMGSLIKLMECPKPVGL 471
             + ++  ++   ++ L + ++  L NL +S+   +        +  L  L E       
Sbjct: 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE-ET 681

Query: 472 QEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSN 531
             A   A+  + +V     E +    S + ++  L   N +   +   +V    +     
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLI-ANPSPAVQHRGIVIILNMINAGE 740

Query: 532 GCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRLKNI 572
              K+L      + L  L +       K  + +A   L   
Sbjct: 741 EIAKKLFETDIMELLSGLGQLPDDTRAKA-REVATQCLAAA 780

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 67.2 bits (163), Expect = 8e-12
 Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 9/254 (3%)

Query: 143 SNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKK-ALESLLQLLKDDDKSAAVVA 201
           +   +   P      Q  +  IR +   LQ      +   +L +L  L   ++     + 
Sbjct: 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII 620

Query: 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSM 261
           KE  V  +   L       +   A   L  +V + D  +        +  L  + E    
Sbjct: 621 KEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE 679

Query: 262 PLKEKAAIGVEAITTDPENA--WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV- 318
                 A  +  IT+         ++    + +L     + +   Q   +  I N+    
Sbjct: 680 ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739

Query: 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH 378
           E+I   L E   + +L        +   +        LAA+  Y     I ER     + 
Sbjct: 740 EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR----IIERSDNAEIP 795

Query: 379 LIQDSTSSIVTVEN 392
            +    S I  + +
Sbjct: 796 DVFAENSKISEIID 809

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 56/351 (15%), Positives = 118/351 (33%), Gaps = 24/351 (6%)

Query: 219 SSIREQAVLALSIIV-SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD 277
            S    A + L+ I  +   +  K  F +     +   L    M  K +  + + A+   
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 278 PEN--AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLV 335
           P +     ++  G + +++    +   L Q  A   +   ++ +D   AL E+G V +L 
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG-VDILK 336

Query: 336 QSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-----LQRLMHLIQDSTSSIVTV 390
           +   S ++  +  A   +  L + G     +     G      +     +          
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396

Query: 391 ENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKR 450
             A   ++ L+L       L    + I  L +  + GN        +   NL  +   + 
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456

Query: 451 AVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKN 510
            +      +I+L +  K    +E   D V  +    + R  ++ +E     L  +   ++
Sbjct: 457 MLP----EMIELAKFAKQHIPEEHELDDVDFI----NKRITVLANEGITTALCALAKTES 508

Query: 511 EALNKKFPVMVTAAVLG--GGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK 559
                     + A VL    G    R ++V  G  + L ++A       K+
Sbjct: 509 HNSQ-----ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKR 554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 95.1 bits (236), Expect = 9e-22
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 5/215 (2%)

Query: 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA 235
            + ++ ALE L  L ++ D +AA   +   +  L+        + +R +A   +      
Sbjct: 54  QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN 112

Query: 236 NDESRKIVFEEGGLGPLLRILETGSMP-LKEKAAIGVEAITTD-PENAWAISAYGGVSVL 293
               ++ V   G L  LLR+L+  +   ++ KA   +  +  +            G SVL
Sbjct: 113 VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172

Query: 294 IEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
           + A +      +  +   ++N+     + K  L   G V  LV  + +  +   E+    
Sbjct: 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGA 232

Query: 353 IATLAASGEYFRLLIIQ-ERGLQRLMHLIQDSTSS 386
           + +L            + E GL+ L+         
Sbjct: 233 LCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 75.8 bits (186), Expect = 3e-15
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 2/175 (1%)

Query: 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
             + +A + +    ++       V   G +  L+ LLD     ++R +A+ A+S +V   
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI-TTDPENAWAISAYGGVSVLIE 295
           +          G   L+R ++     LK K+A  ++ +    PE+   + + G V  L+ 
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

Query: 296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAA 350
             R+  +    H +GA+ ++            E  +  L + L     L Q++  
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG-LEELLRHRCQLLQQHEE 270

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 75.1 bits (184), Expect = 5e-15
 Identities = 37/252 (14%), Positives = 81/252 (32%), Gaps = 9/252 (3%)

Query: 216 HHQSSIREQAVLALSIIVSANDESRKI--VFEEGGLGPLLRILETGSMPLKEKAAIGVEA 273
           HH SS        +       ++ +    V  +          +      +E A   +  
Sbjct: 7   HHHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLAD 66

Query: 274 ITTDPENAWAISAYGGVSVLIEAF-RSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAV 331
           +  + +NA       G+ +L+  +  +G A  +  A   I   +     I+  +   GA+
Sbjct: 67  LCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126

Query: 332 PVLVQSLTSSSNL-AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV 390
             L++ L   +    +  A   I+ L    E   L  ++  G   LM  +Q     +   
Sbjct: 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--K 184

Query: 391 ENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKR 450
             +   + +L +     +    +   + QL   ++  +    +     L +L       +
Sbjct: 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL--VTDFPQ 242

Query: 451 AVASCMGSLIKL 462
            V  C    + L
Sbjct: 243 GVRECREPELGL 254

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 69.7 bits (170), Expect = 3e-13
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 11/223 (4%)

Query: 301 TALTQSHAVGAIRNIA-AVEDIKAA---LAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
            A  Q    GA+  +A   E++  A       G   ++ + L + +   +  AA  I T 
Sbjct: 50  QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 109

Query: 357 AASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSF 416
           + +    +  ++    L++L+ L+       V    AL AIS L     A  +       
Sbjct: 110 SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR-VKALFAISCLVREQEAGLLQFLRLDG 168

Query: 417 IIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMG---SLIKLMECPKPVGLQE 473
              L   +++    L+  S+ LL NL +     +     MG    L+ L+         E
Sbjct: 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS-PFHE 227

Query: 474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKK 516
               A+ SL+T         R+    + L ++L  + + L + 
Sbjct: 228 HVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQLLQQH 268

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 79.6 bits (196), Expect = 5e-17
 Identities = 38/219 (17%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 209 LISLLDFHHQS-SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKA 267
            +S+L+  H   S    A   +        E+RK V +  G+  LL++L+  +  ++   
Sbjct: 13  AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72

Query: 268 AIGVEAITT----DPENAWAISAYGGVSVLIEAFRSGTAL-TQSHAVGAIRNIAAVEDIK 322
                A+      D +N   ++   GV  L++  +    L T+    G + N+++ + +K
Sbjct: 73  C---GALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 323 AALAEEGAVPVLVQSLTSSSNLA---------------QENAADCIATLAASGEYFRLLI 367
             +  E  + +    +   S                    N   C+  ++++G   R  +
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189

Query: 368 IQERGL-QRLMHLIQDSTSSI----VTVENALLAISSLS 401
            +  GL   L+H ++ + +         EN +  + +LS
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 68.1 bits (166), Expect = 4e-13
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238
              A   +        ++   V +   +  L+ LL       ++     AL  +V  +++
Sbjct: 27  ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDND 85

Query: 239 SRKIVFEEGGLGPLLRIL-ETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF 297
           ++  V E  G+  LL++L +T  +  K++    +  ++++ +    +     +++     
Sbjct: 86  NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENII 145

Query: 298 RSGTALTQS---------------HAVGAIRNIAAV-EDIKAALAE-EGAVPVLVQSLTS 340
              +   +                +  G +RN+++   D + A+   +G +  LV  +  
Sbjct: 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205

Query: 341 SSNLAQENAA---DCIATL 356
           +    Q +     +C+  L
Sbjct: 206 TIADYQPDDKATENCVCIL 224

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.9 bits (150), Expect = 5e-11
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 20/197 (10%)

Query: 299 SGTALTQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357
                  S A   I++    + + +  + +   +  L+Q L   +   Q      +  L 
Sbjct: 21  HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80

Query: 358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSST---- 413
                 +L + +  G+ RL+ +++ +       +     + +LS +D    ++ +     
Sbjct: 81  FEDNDNKLEVAELNGVPRLLQVLKQTRDLETK-KQITGLLWNLSSNDKLKNLMITEALLT 139

Query: 414 -TSFIIQLGEFIKRGNVLLQQVSSSL---------LGNLS-ISDGNKRAVASCMG---SL 459
            T  II        G+                   L N+S      ++A+  C G   SL
Sbjct: 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSL 199

Query: 460 IKLMECPKPVGLQEAAT 476
           +  +         +   
Sbjct: 200 VHYVRGTIADYQPDDKA 216

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 370 ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNV 429
           E  L+R + +++        +  A   I       S AR   +    I++L + +K  N 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 430 LLQQVSSSLLGNLSI-SDGNKRAVASCMG--SLIKLMECPKPVGLQEAATDAVLSLLTVR 486
            +Q+     L NL    + NK  VA   G   L+++++  + +  ++  T  + +L +  
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 487 SNRKELVRD 495
             +  ++ +
Sbjct: 127 KLKNLMITE 135

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 327 EEGAVPVLVQSLTSSSN--LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST 384
            E  +   V  L +          AA  I          R  + Q RG+ +L+ L++   
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 385 SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS 443
             +        A+ +L   D+  ++  +  + + +L + +K+  ++  ++  + LL NLS
Sbjct: 66  EDV--QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 444 ISDGNKR-AVASCMGSLIKLMECPKPVGLQEAATDA 478
            +D  K   +   + +L + +  P     +     A
Sbjct: 124 SNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKA 159

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 82.2 bits (202), Expect = 9e-17
 Identities = 50/343 (14%), Positives = 123/343 (35%), Gaps = 40/343 (11%)

Query: 209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAA 268
            +  L        +      +      ++ +++ V++ GG+  L+ +L + +  +++ AA
Sbjct: 7   AVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 269 IGVEAITT-DPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALA 326
             +  +      N        G+   +   R +G A  Q    G + N+++ +++K  L 
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 327 EEGAVPVLVQSLTS----------------SSNLAQENAADCIATLAASGEYFRLLIIQE 370
              A+PVL   +                         NA  C+  L+++    + +    
Sbjct: 126 -ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 371 RGLQRLMHLIQDSTSSIV----TVENALLAISSLSLSDSAA------RILSSTTSFIIQL 420
             +  LM  +Q+  ++      +VEN +  + +LS    A       ++  +  +   + 
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 421 GEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV-----ASCMGSLIKLMECPKPVGLQEAA 475
                  N   + ++++    L   + N +       +  + + + LM   K     EA 
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 476 TDAVLSL-----LTVRSNRKELVRDEKSVMRLMQMLDPKNEAL 513
             A+ +L     L      + +   EK + ++ ++L   N  +
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 77.2 bits (189), Expect = 4e-15
 Identities = 35/245 (14%), Positives = 86/245 (35%), Gaps = 21/245 (8%)

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQEN 348
           +   ++   S     Q+     I++     E  K  + + G +  LV  L S +   Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDS-AA 407
           AA  +  L       +L   ++ G++  + L++ + ++ +  +     + +LS +D    
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ-KQLTGLLWNLSSTDELKE 122

Query: 408 RILSSTTSFIIQLGEFIKRG-------------NVLLQQVSSSLLGNLSISDGNKRAVAS 454
            +++     +         G             +  +   ++  L NLS +D  ++ + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 455 CMG---SLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE 511
             G   SL+  ++        +    +V + + V  N    +  E          + +N 
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDK--SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 512 ALNKK 516
              K 
Sbjct: 241 YTEKS 245

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 40/342 (11%), Positives = 102/342 (29%), Gaps = 46/342 (13%)

Query: 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA 235
            E    AL  L   +        ++   G      ++        +   A   L  + SA
Sbjct: 122 EELIADALPVLADRV--------IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE 295
           +   + +    G +  L+  ++      +         +      ++ + A         
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

Query: 296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT 355
            + +  A T+  + G   N                           S+    N  DC   
Sbjct: 234 EYNARNAYTEKSSTGCFSNK--------------------------SDKMMNNNYDCPLP 267

Query: 356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS-----LSDSAARIL 410
              +       +     ++  ++L+  S     T+E    A+ +L+     +S   ++++
Sbjct: 268 EEETNPKGSGWLYHSDAIRTYLNLMGKS-KKDATLEACAGALQNLTASKGLMSSGMSQLI 326

Query: 411 SSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVA-SCMGSLIKLMECPKPV 469
                 + Q+   ++ GN  + +  +SLL N+S      R +       + +L+      
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN 386

Query: 470 G-----LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQML 506
                 +  +A   V +L+  +    +       +  ++ + 
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSS-----IREQA 225
           LQ G  +  +     L  + +       +         +  LL  H  ++     I   A
Sbjct: 340 LQSGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILSSA 397

Query: 226 VLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGV 271
              +  ++++  +  K  F    L  ++ +  + + P   +AA  +
Sbjct: 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 81.5 bits (200), Expect = 2e-16
 Identities = 58/349 (16%), Positives = 106/349 (30%), Gaps = 23/349 (6%)

Query: 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIE 295
                  + +  L  ++ +L      +K  AA  ++ +   + +    +    G+ VL+ 
Sbjct: 38  GGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVG 97

Query: 296 AFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLTSSSNL-AQENAADC 352
                       A GA++NI+    +D K A+     VP LV+ L  + ++   E     
Sbjct: 98  LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGT 157

Query: 353 IATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSD------SA 406
           +  L++         I +  L  L   +    S      N       +            
Sbjct: 158 LWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215

Query: 407 ARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKL---- 462
            R +SS  S   +           L  +  + +G     D + + V +C+  L  L    
Sbjct: 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ---KDSDSKLVENCVCLLRNLSYQV 272

Query: 463 -MECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV 521
             E P+    QEAA +   +  T  +   EL+   + V   + +L         +     
Sbjct: 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332

Query: 522 T---AAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGN 567
                A         R  L    A   +  L   E     K       N
Sbjct: 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 76.9 bits (188), Expect = 5e-15
 Identities = 61/412 (14%), Positives = 138/412 (33%), Gaps = 66/412 (16%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIRE 223
           + ++   L       K  A   L  L   +DK    V K   +  L+ LLD   +  +  
Sbjct: 50  LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKE-VHL 108

Query: 224 QAVLALSII-VSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENA 281
            A  AL  I    + +++  +    G+  L+R+L     M L E     +  +++     
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168

Query: 282 WAISAYGGVSVLIEAFRSGTALTQS-----------------HAVGAIRNIAA--VEDIK 322
             I  +   ++  E     +   +                  +  G +RN+++   E  +
Sbjct: 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228

Query: 323 AALAEEGAVPVLVQSLTSS------SNLAQENAADCIATLA------------------- 357
                +G V  L+  + +        +   EN    +  L+                   
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288

Query: 358 ------ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSD----SAA 407
                  S      L+ Q   ++  + L+++S  +   +E +  AI +L           
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKES-KTPAILEASAGAIQNLCAGRWTYGRYI 347

Query: 408 RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS-CMGSLIKLMECP 466
           R        +  + + +   +  + + +S  L NL++   NK  +    + +L+K +   
Sbjct: 348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGG 407

Query: 467 KPVGLQEAATDAVLSLLTVRSNR-------KELVRDEKSVMRLMQMLDPKNE 511
           +       + D V+S+L   +          + +R+ + + +L+ +    N 
Sbjct: 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 60.7 bits (146), Expect = 7e-10
 Identities = 38/280 (13%), Positives = 98/280 (35%), Gaps = 17/280 (6%)

Query: 294 IEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA--EEGAVPVLVQSLTSSSNLAQENAAD 351
           + + +   A    H  G++ ++ ++           +  +P ++  L    +  + NAA 
Sbjct: 11  VPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAA 70

Query: 352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAA-RIL 410
            +  L    +  +  + + +G+  L+ L+      +     A  A+ ++S       +I 
Sbjct: 71  YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV--HLGACGALKNISFGRDQDNKIA 128

Query: 411 SSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRA-VASCMGSLIKLMECPKP 468
                 +  L   +++   + L +V +  L NLS  D  K   V   + +L   +  P  
Sbjct: 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHS 188

Query: 469 VGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV--- 525
              +E   D            + ++ +    +R +     +     ++   +V A +   
Sbjct: 189 GWEREPNEDC----KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIV 244

Query: 526 ---LGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQ 562
              +G   +  +         ++L      E+P A++  +
Sbjct: 245 QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 21/251 (8%)

Query: 124 LSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLF--IRDIFTRLQIGGVEFKKK 181
           LS  +H              N    +   P    + L     +R   + L+        +
Sbjct: 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327

Query: 182 ALESLLQLLKDDDKSAAV-----VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
           A    +Q L     +        + +E  +  +  LL   H   + + A  AL  +  A 
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASGALRNL--AV 384

Query: 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGV---------EAITTDPENAWAISAY 287
           D   K +  +  +  L++ L  G        +            E I  + E A  +   
Sbjct: 385 DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444

Query: 288 GGVSVLIEAFRSGTALTQSH--AVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLA 345
            G+  L+   +SG    +    A   ++ I   ++++  L +EG      Q   ++++ +
Sbjct: 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRS 504

Query: 346 QENAADCIATL 356
           Q + +   +TL
Sbjct: 505 QSSHSYDDSTL 515

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 50/310 (16%), Positives = 105/310 (33%), Gaps = 47/310 (15%)

Query: 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSS 342
            I     +S L     + +   +   V  I NI   ++    LA++GAV ++++ L +  
Sbjct: 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQ 511

Query: 343 NLAQENAADCIATLAASGEYFRLLII-----------QERGLQRLMHLIQDSTSSIVTVE 391
           ++ +         L       R+LI                +  L  L+  ST       
Sbjct: 512 DIGEPIRILGCRALT------RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565

Query: 392 N------------ALLAISSLSLSD-----SAARILSSTTSFIIQLGEFIKRGNVLLQQV 434
           +            ALLA+++L+ S+        + + ST  +   +   +   NV LQ+ 
Sbjct: 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625

Query: 435 SSSLLGNLSIS---------DGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485
           +  L+ N+            +            L+KL++    V  Q A      ++ T 
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATT 684

Query: 486 R-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAA--VLGGGSNGCRKRLVAAGA 542
                KEL+  ++ +   +Q+   + + +  +  +++           NG  +       
Sbjct: 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQE 744

Query: 543 YQHLQKLAET 552
            Q L+     
Sbjct: 745 NQKLKDALNM 754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 37/302 (12%)

Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
            + +   + +L   +  +   + ++Q V  +  I   +      + ++G +  +L  L  
Sbjct: 452 YILRTELISFLKREMH-NLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLAN 509

Query: 259 GSMPLKEKAAIGVEA-----ITTDPENAWAISAYGGV---------------SVLIEAFR 298
                +    +G  A     I T+P   +   +                      +    
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569

Query: 299 SGTALTQSHAVGAIRNIAAVED------IKAALAEEGAVPVLVQSLTSSSNLAQENAADC 352
                    A+ A+ N+A+ E        K  ++ +     +   +   +   Q +  + 
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629

Query: 353 IATLAASGEYFRLLII---QERGLQRLMHLIQDSTSSIV-TVENALLAISSL-SLSDSAA 407
           I+ + +               + L+    L++    S V +        +++ +     A
Sbjct: 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689

Query: 408 RILSSTTSFIIQLGEFI--KRGNVLLQQVSSSLLGNL--SISDGNKRAVASCMGSLIKLM 463
           + L +    I    +    +  ++ L+Q    L   L   I D     V   +    KL 
Sbjct: 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

Query: 464 EC 465
           + 
Sbjct: 750 DA 751

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 50/301 (16%), Positives = 93/301 (30%), Gaps = 102/301 (33%)

Query: 11  PTQAAENDAVAPLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRT----KLVS-LQSSL 65
           P +        P    L +I          + ++R  +  W   +     KL + ++SSL
Sbjct: 319 PREVL---TTNPR--RLSII----------AESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 66  SSISDS------------PHWSENPLLHTLLPSLLSTLQRL-KALSDQCTLSSFTGGKLL 112
           + +  +            P    +      +P+    L  +   +     +      KL 
Sbjct: 364 NVLEPAEYRKMFDRLSVFP---PS----AHIPT--ILLSLIWFDVIKSDVMVVVN--KLH 412

Query: 113 MQSDLDIANTSLSNHLHDLDLLLR-----SGVLHQSNAIV-------------LSQPGP- 153
             S ++      +  +  + L L+        LH+S  IV             L  P   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLD 470

Query: 154 -------GSH------KQDLVLFIRDIFTRLQIGGVEF-KKK---------ALESLLQLL 190
                  G H       + + LF R +F         F ++K         A  S+L  L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLDF-----RFLEQKIRHDSTAWNASGSILNTL 524

Query: 191 KDDDKSAAVVAKEGNV--GYLISLLDF---HHQSSIREQAVLALSIIVSANDESRKIVFE 245
           +        +          + ++LDF     ++ I  +    L I + A DE+   +FE
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA---IFE 581

Query: 246 E 246
           E
Sbjct: 582 E 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 60/390 (15%), Positives = 109/390 (27%), Gaps = 123/390 (31%)

Query: 47  FVGRWQI---LRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTL 103
            V R Q    LR  L+ L+            ++N L+  +L S  + +  L         
Sbjct: 130 NVSRLQPYLKLRQALLELRP-----------AKNVLIDGVLGSGKTWVA-LDVCLSYKVQ 177

Query: 104 SSFTGG------KLLMQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHK 157
                       K     +  +    L   L+ +D    S   H SN  +          
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKL--------RI 227

Query: 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH 217
             +   +R +            K     LL L   + ++A                 F+ 
Sbjct: 228 HSIQAELRRLLKS---------KPYENCLLVL--LNVQNAKAWNA------------FNL 264

Query: 218 QSSI----REQAVLALSIIVSANDESRKIVFEEGGLGP------LLRILETGSMPLKEKA 267
              I    R + V     + +A      +      L P      LL+ L+     L    
Sbjct: 265 SCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320

Query: 268 AIGVEAITTDPENAWAISAYGGVSVLI-EAFRSGTALTQ----------SHAVGAIRNIA 316
               E +TT+P     +S       +I E+ R G A             +  + +  N+ 
Sbjct: 321 ----EVLTTNP---RRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 317 AVEDIKA---ALA--EEGA-VP--VL---------------VQSLTSSSNLAQENAADCI 353
              + +     L+     A +P  +L               V  L   S L ++   +  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKEST 425

Query: 354 ATLAASGEYFRLLIIQERGLQRLMH--LIQ 381
            ++     Y  L  ++      L H  ++ 
Sbjct: 426 ISI--PSIYLELK-VKLENEYAL-HRSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.82
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.64
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.63
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.59
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.58
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.57
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.56
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.42
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.38
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.36
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.36
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.35
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.29
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.26
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.25
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.24
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.23
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.2
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.18
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.18
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.14
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.0
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.97
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.93
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.91
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.58
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.55
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.47
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.46
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.35
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.35
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.31
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.29
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.25
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.19
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.16
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.06
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.99
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.94
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.92
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.83
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.34
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.29
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.16
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.01
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.89
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.69
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.64
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.49
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.38
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.37
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.3
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.04
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.02
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.89
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.42
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.38
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.38
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.0
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.83
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.57
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.49
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.44
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.35
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.82
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	93.6
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.52
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.93
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.57
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.56
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.17
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.79
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.52
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.41
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.4
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	90.34
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.89
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	88.97
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	88.37
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	88.35
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.31
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	86.84
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	84.18
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.61

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-36  Score=327.57  Aligned_cols=375  Identities=17%  Similarity=0.202  Sum_probs=315.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc-ChhhHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA-NDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~-~~~~~~  241 (579)
                      .|+.||.+|++++++.+..|+.+|.+++..++.++..|.+.|+||.||++|+ +++..+|+.|+++|.+|+.. +++++.
T Consensus        49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            5899999999999999999999999999999999999999999999999999 99999999999999999983 589999


Q ss_pred             HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc------------------CCCH
Q 047123          242 IVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR------------------SGTA  302 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~------------------~~~~  302 (579)
                      .+++.|+|++|+++|.+ ++.++++.++++|++|+.+++++..|++ ++++.|+.++.                  ..++
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence            99999999999999998 5889999999999999999999999996 57999999772                  2357


Q ss_pred             HHHHHHHHHHHHhhcCh-hhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCChh------------
Q 047123          303 LTQSHAVGAIRNIAAVE-DIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAASGEY------------  362 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~~~-~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~~~~------------  362 (579)
                      .++++|+++|+||+.+. ++|..+++. |+++.|+.++++      .+...++.|+++|.||+.....            
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            89999999999999854 568889875 566899999864      4567999999999999864110            


Q ss_pred             -------------hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccch------hHHHHHhhcCcHHHHHHHH
Q 047123          363 -------------FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSD------SAARILSSTTSFIIQLGEF  423 (579)
Q Consensus       363 -------------~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~------~~~~l~~~~~g~i~~L~~l  423 (579)
                                   ..+.+.+.++++.|+.++..+.. ..+++.|+++|+|||.+.      .+..+.+.  ++++.|+.+
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~-~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~--~glp~Lv~L  363 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT-PAILEASAGAIQNLCAGRWTYGRYIRSALRQE--KALSAIADL  363 (584)
T ss_dssp             ---------CCCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH--HHHHHHHHG
T ss_pred             ccccccccccCchhHHHHhcccHHHHHHHHHccCCC-HHHHHHHHHHHHHHHcCCccccHHHHHHHHHc--CcHHHHHHH
Confidence                         01112233456788999976543 589999999999998751      12234456  899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCC-------CHhHHHHHHHHHHHhhcCCcchhHHHhh
Q 047123          424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPK-------PVGLQEAATDAVLSLLTVRSNRKELVRD  495 (579)
Q Consensus       424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~-------~~~v~~~a~~aL~~L~~~~~~~~~~~~~  495 (579)
                      |.+++..++..|+++|+||+.++.++..|... ++.|+++|..++       +.+++..++.+|+||+..++.....+.+
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~  443 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE  443 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999999999999999877888888555 999999994432       5688999999999998765554445557


Q ss_pred             cccHHHHHhhcCCC--chhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHH
Q 047123          496 EKSVMRLMQMLDPK--NEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQH  545 (579)
Q Consensus       496 ~~~i~~Lv~lL~~~--~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~  545 (579)
                      .++|+.|+++|.++  .+. .+++|..+|.++..++.  .|+.+...|+-+.
T Consensus       444 ~g~I~~Lv~LL~s~~~~~~-v~k~Aa~vL~nl~~~~e--lr~~~kk~G~~~~  492 (584)
T 3l6x_A          444 TQGIEKLVLINKSGNRSEK-EVRAAALVLQTIWGYKE--LRKPLEKEGWKKS  492 (584)
T ss_dssp             TTHHHHHHHHHTCSSSCHH-HHHHHHHHHHHHHTSHH--HHHHHHTTTCCGG
T ss_pred             CCChHHHHHHHhCCCCChH-HHHHHHHHHHHHHcCHH--HHHHHHHcCCCHH
Confidence            99999999999886  444 89999999999999877  9999988776543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5e-36  Score=324.60  Aligned_cols=391  Identities=15%  Similarity=0.184  Sum_probs=335.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..|+++|..++++|++.+..|+..++.+.+ +.......+++.|+||.||++|+.++++.+|..|+++|.||+..+++++
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            358999999999999999999999998765 3334578899999999999999734568999999999999988789999


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHHHHH
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTA-----LTQSHAVGAIRN  314 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~a~~aL~n  314 (579)
                      ..+++.|++|.|+++|.+++.++++.|+++|++|+.+ ++++..+.+.|+++.|+.++.+.+.     .++..++++|.|
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999974 6788999999999999999987543     568899999999


Q ss_pred             hhcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123          315 IAAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       315 Ls~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      ++.+.... ......|++|.|+.++.++++.++..++++|.+|+..++.....+.+.|+++.|+.++.+.+.  .++..+
T Consensus       217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a  294 (510)
T 3ul1_B          217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPA  294 (510)
T ss_dssp             HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHH
T ss_pred             HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCCh--hhhhHH
Confidence            99865433 333356789999999999999999999999999999887777888899999999999998776  899999


Q ss_pred             HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123          394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKP  468 (579)
Q Consensus       394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~  468 (579)
                      +++|+|++..  .....+++.  |+++.|+.+|.+.+..++..|+++|.||+ .+++.+..+.+.  ++.|+.++ .+.+
T Consensus       295 l~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL-~~~~  371 (510)
T 3ul1_B          295 LRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKAD  371 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHT--TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSSC
T ss_pred             HHHHHHhhcCCHHHHHHHhhc--cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH-cCCC
Confidence            9999999887  556778888  99999999999999999999999999999 677888888887  99999999 6778


Q ss_pred             HhHHHHHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-----CCChhHHHHHHHcCc
Q 047123          469 VGLQEAATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-----GGSNGCRKRLVAAGA  542 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-----~~~~~~r~~i~~~g~  542 (579)
                      .+++..|+.+|+|++.... .....+.+.|++++|+++|+..+++ ....++.+|.++..     ......+..|.+.|+
T Consensus       372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~-i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg  450 (510)
T 3ul1_B          372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEECGG  450 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence            9999999999999987432 2333344689999999999998877 67777777777652     112235677889999


Q ss_pred             hHHHHhhhccCCchHH
Q 047123          543 YQHLQKLAETEVPGAK  558 (579)
Q Consensus       543 ~~~L~~L~~~~~~~ak  558 (579)
                      +..|..|.+++++...
T Consensus       451 l~~ie~Lq~~~n~~i~  466 (510)
T 3ul1_B          451 LDKIEALQRHENESVY  466 (510)
T ss_dssp             HHHHHHGGGCSSHHHH
T ss_pred             HHHHHHHHcCCCHHHH
Confidence            9999999988877653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.4e-36  Score=319.59  Aligned_cols=362  Identities=14%  Similarity=0.159  Sum_probs=310.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.++..|++++++.+..|+.+|.+++..++..+..+.+.|+||.|+++|+ ++++.+|+.|+++|.+|+..+++++..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4789999999999999999999999999888888889999999999999999 999999999999999999855999999


Q ss_pred             HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh--------cCC--------CHHHH
Q 047123          243 VFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF--------RSG--------TALTQ  305 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll--------~~~--------~~~~~  305 (579)
                      +++.|++++|+++|. ++++++++.++++|.+|+.+++++..+.+ |+++.|+.++        .++        ++.++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999999 88999999999999999998999999999 9999999999        322        45677


Q ss_pred             HHHHHHHHHhhcChhhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCC------------------
Q 047123          306 SHAVGAIRNIAAVEDIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAASG------------------  360 (579)
Q Consensus       306 ~~a~~aL~nLs~~~~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~~------------------  360 (579)
                      ..++++|+||+.+++++..+.+. |+++.|+.++.+      .+..+++.++.+|.|++...                  
T Consensus       161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            79999999999999999999997 999999999974      34568889999999987310                  


Q ss_pred             --------------------------------hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-
Q 047123          361 --------------------------------EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-  405 (579)
Q Consensus       361 --------------------------------~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-  405 (579)
                                                      +...+.+.+.|+++.|+.++..... +.+++.|+++|+||+.+  +. 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcCcch
Confidence                                            0011234456778899999987654 58999999999999986  21 


Q ss_pred             --H-HHHH-hhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCC-----CHhHHHHH
Q 047123          406 --A-ARIL-SSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPK-----PVGLQEAA  475 (579)
Q Consensus       406 --~-~~l~-~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~-----~~~v~~~a  475 (579)
                        . +.++ +.  |+++.|+++|.+++.+++..|+++|.||+.+++++..+.+. ++.|+++|...+     +.++...+
T Consensus       320 ~~~~~~~v~~~--~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~  397 (457)
T 1xm9_A          320 SGMSQLIGLKE--KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA  397 (457)
T ss_dssp             HHHHHHHHTTS--CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence              1 2233 56  89999999999999999999999999999888988888777 999999994432     24688899


Q ss_pred             HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCC-chhhhhHHHHHHHHHHhCCCC
Q 047123          476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK-NEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~k~~av~~L~~L~~~~~  530 (579)
                      +.+|.++....+.....+.+.||+++|++++.++ ++. +++.|..+|.++..++.
T Consensus       398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~-i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK-AAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH-HHHHHHHHHHHHHcchh
Confidence            9999999887777666777899999999999988 666 88999999999887654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.6e-35  Score=328.55  Aligned_cols=382  Identities=13%  Similarity=0.153  Sum_probs=325.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhC----cHHHHHHhhccCC--CHHHHHHHHHHHHHhhcc
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEG----NVGYLISLLDFHH--QSSIREQAVLALSIIVSA  235 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g----~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~  235 (579)
                      .++.|+.++++++...+..|+.+|..+..... +........|    .++.|+++|. ++  ++++++.|+++|..|+. 
T Consensus       331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~-~~~~d~~v~~~AveaLayLS~-  408 (810)
T 3now_A          331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI-KPGKDKDIRRWAADGLAYLTL-  408 (810)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH-CSSCCSSHHHHHHHHHHHHTT-
T ss_pred             CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhC-
Confidence            46889999999999999999999999975322 1111222233    4677888888 77  89999999999999999 


Q ss_pred             ChhhHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc------------------------------cH---
Q 047123          236 NDESRKIVFE-EGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE------------------------------NA---  281 (579)
Q Consensus       236 ~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~------------------------------~~---  281 (579)
                      +++.+..++. .|++++|+.+|++++..++..++++|.||+.+.+                              ++   
T Consensus       409 ~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~  488 (810)
T 3now_A          409 DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI  488 (810)
T ss_dssp             SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence            8888888874 6999999999999999999999999999997432                              12   


Q ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123          282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE  361 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~  361 (579)
                      ..+++.|+++.|+.++.++++.+++.|+++|.|++.+++++..++++|++|+|+.++.++++..++.|+++|.+++.+..
T Consensus       489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999986432


Q ss_pred             hhHHHH---HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123          362 YFRLLI---IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS  436 (579)
Q Consensus       362 ~~r~~l---~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~  436 (579)
                      . ...+   ...|++++|++++.++.. ...+..|+++|.||+..  +.+..+++.  |+++.|+.++.++++.+|..|+
T Consensus       569 p-~~~~~~~~~~~aIppLv~LL~~~~~-~l~~~eAl~AL~NLa~~~d~~~~~Ii~a--G~l~~Lv~LL~s~~~~Vq~~A~  644 (810)
T 3now_A          569 P-EVSFSGQRSLDVIRPLLNLLQQDCT-ALENFESLMALTNLASMNESVRQRIIKE--QGVSKIEYYLMEDHLYLTRAAA  644 (810)
T ss_dssp             H-HHHTTTHHHHHTHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSCCTTHHHHHH
T ss_pred             h-hhhhcchhhhcHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHH
Confidence            2 1111   114689999999986533 34567899999999987  567889999  9999999999999999999999


Q ss_pred             HHHHHhcCChhhHHHHHH-H--HHHHHHhccCCCCHhHHHHHHHHHHHhhc-CCcchhHHHhhcccHHHHHhhcCCCchh
Q 047123          437 SLLGNLSISDGNKRAVAS-C--MGSLIKLMECPKPVGLQEAATDAVLSLLT-VRSNRKELVRDEKSVMRLMQMLDPKNEA  512 (579)
Q Consensus       437 ~aL~~L~~~~~~~~~i~~-~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  512 (579)
                      ++|+||+.+++.+..+.+ .  ++.|+.++ .+++..+|..|+++|+||+. .....+.++...+++++|+++|.+++.+
T Consensus       645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~  723 (810)
T 3now_A          645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA  723 (810)
T ss_dssp             HHHHHHTTSHHHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHH
T ss_pred             HHHHHHhCChHHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHH
Confidence            999999988888888775 3  99999999 77889999999999999998 4556666774489999999999998888


Q ss_pred             hhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccC
Q 047123          513 LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE  553 (579)
Q Consensus       513 ~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~  553 (579)
                       .++.+++++.+++.+. .++++.|+++|++++|++|++..
T Consensus       724 -vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~  762 (810)
T 3now_A          724 -VQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQLP  762 (810)
T ss_dssp             -HHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCT
T ss_pred             -HHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCc
Confidence             8999999999998753 45899999999999999998765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=9.6e-35  Score=316.11  Aligned_cols=390  Identities=15%  Similarity=0.181  Sum_probs=335.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++.++..+++++++.+..|+..++.+.+ +.......+++.|+||.|+++|+.+.++.+|..|+++|.+|+..+++.+.
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            58899999999999999999999998754 44455788899999999999997355699999999999999986788889


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHHHHHh
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA-----LTQSHAVGAIRNI  315 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~a~~aL~nL  315 (579)
                      .+++.|++|+|+.+|.+++.++++.|+++|.+|+. +++++..+.+.|+++.|+.++...+.     .++..++++|.|+
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999996 56889999999999999999986543     5688999999999


Q ss_pred             hcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          316 AAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       316 s~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                      +.+.... ......|++|.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+.  .++..++
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~v~~~a~  314 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPAL  314 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh--hHHHHHH
Confidence            9865433 333456789999999999999999999999999999888878888899999999999988775  8999999


Q ss_pred             HHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCH
Q 047123          395 LAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPV  469 (579)
Q Consensus       395 ~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~  469 (579)
                      ++|+|++.+  .....++..  |+++.|+.+|.+.++.++..|+++|.||+ .+++.+..+.+.  ++.|+.++ .+.+.
T Consensus       315 ~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~  391 (529)
T 3tpo_A          315 RAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADF  391 (529)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-HSSCH
T ss_pred             HHHHHHHccchHHHHHHhhc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-cCCCH
Confidence            999999987  556778888  99999999999999999999999999999 677778888877  99999999 77789


Q ss_pred             hHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-----CCChhHHHHHHHcCch
Q 047123          470 GLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-----GGSNGCRKRLVAAGAY  543 (579)
Q Consensus       470 ~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-----~~~~~~r~~i~~~g~~  543 (579)
                      +++..|+.+|+|++... ......+.+.|+|++|+++|+..+++ ....++.+|.++..     ......+..|.+.|++
T Consensus       392 ~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~-i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  470 (529)
T 3tpo_A          392 KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  470 (529)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence            99999999999998643 23333444699999999999998877 66777777777652     1122346678899999


Q ss_pred             HHHHhhhccCCchHH
Q 047123          544 QHLQKLAETEVPGAK  558 (579)
Q Consensus       544 ~~L~~L~~~~~~~ak  558 (579)
                      ..|..|.+++++...
T Consensus       471 ~~ie~Lq~~~n~~i~  485 (529)
T 3tpo_A          471 DKIEALQRHENESVY  485 (529)
T ss_dssp             HHHTGGGGCSSHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            999999998887654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-34  Score=311.91  Aligned_cols=365  Identities=16%  Similarity=0.207  Sum_probs=301.6

Q ss_pred             hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCc
Q 047123          202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPE  279 (579)
Q Consensus       202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~  279 (579)
                      ..+.++.||++|. ++++.+|..|+.+|.+++..+++++..+++.|+||+|+++|++++.++++.|+++|.+|+.  +++
T Consensus        46 ~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            5678999999999 9999999999999999997689999999999999999999999999999999999999997  489


Q ss_pred             cHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc------------------C
Q 047123          280 NAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT------------------S  340 (579)
Q Consensus       280 ~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~------------------~  340 (579)
                      ++..|++.|+|+.|+.+|.+ .+..+++.++++|+||+.+++++..+++ ++++.|++++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            99999999999999999997 5789999999999999999999999996 57999999871                  2


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc-hhH--------
Q 047123          341 SSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS-DSA--------  406 (579)
Q Consensus       341 ~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~-~~~--------  406 (579)
                      .++.++++++++|.||+..+++.|..+++ .|+++.|+.++++.    ..+...+++|+++|+||+.. ...        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            35799999999999999988888999988 56678999998752    22348999999999999986 110        


Q ss_pred             ------------------HHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-----hhhHHHHHHH--HHHHH
Q 047123          407 ------------------ARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSIS-----DGNKRAVASC--MGSLI  460 (579)
Q Consensus       407 ------------------~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~-----~~~~~~i~~~--v~~Lv  460 (579)
                                        ..+...  ++++.|+.+|. +.++.+++.|+++|.||+.+     ..++..+.+.  ++.|+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~--~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQP--EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             ------------CCCCGGGGGGSH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhcccccccccccCchhHHHHhcc--cHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              011222  56778899995 56899999999999999832     2344455444  99999


Q ss_pred             HhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch-------hhhhHHHHHHHHHHhCCCChhH
Q 047123          461 KLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE-------ALNKKFPVMVTAAVLGGGSNGC  533 (579)
Q Consensus       461 ~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-------~~~k~~av~~L~~L~~~~~~~~  533 (579)
                      ++| .+.+..++..|+.+|+||+.+..++..+  +.++++.||++|...+.       ......++.+|.+++... .+.
T Consensus       362 ~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~  437 (584)
T 3l6x_A          362 DLL-TNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEA  437 (584)
T ss_dssp             HGG-GCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHH
T ss_pred             HHH-cCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHH
Confidence            999 7888999999999999999988776644  47899999999987632       125667788888887543 348


Q ss_pred             HHHHHHcCchHHHHhhhccC--CchHH----HHHHHHh-cCcchhhhc
Q 047123          534 RKRLVAAGAYQHLQKLAETE--VPGAK----KVLQRLA-GNRLKNIFS  574 (579)
Q Consensus       534 r~~i~~~g~~~~L~~L~~~~--~~~ak----~~~~~l~-~~~~~~~~~  574 (579)
                      ++.|+++|+++.|++|++++  .+.++    .++.-++ ...++++|.
T Consensus       438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~k  485 (584)
T 3l6x_A          438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE  485 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            99999999999999999986  44332    3344444 556666663

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.3e-34  Score=312.06  Aligned_cols=392  Identities=14%  Similarity=0.174  Sum_probs=342.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChh
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~  238 (579)
                      ...++.++..|++++++.+..|+..|..++...+ .....++..|++|.|+++|. +++ +.+|..|+++|.+++..+++
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-REDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHH
Confidence            3458999999999999999999999999977554 67788899999999999999 876 99999999999999996689


Q ss_pred             hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHhh
Q 047123          239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAF-RSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLs  316 (579)
                      ++..+++.|++++|+.+|.++++.+++.|+++|.+|+. +++++..+.+.|+++.|+.++ .+.++.++..++++|.+|+
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999995 467788999999999999999 5678999999999999999


Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123          317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA  396 (579)
Q Consensus       317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a  396 (579)
                      ............|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+.  .++..|+++
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~--~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP--SVLIPALRT  309 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH--HHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh--hHHHHHHHH
Confidence            875444445568999999999999999999999999999998877766788899999999999988765  899999999


Q ss_pred             HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHh
Q 047123          397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVG  470 (579)
Q Consensus       397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~  470 (579)
                      |+||+.+  .....++..  |+++.|+.+|.++ ++.++..|+++|.||+ .+++....+.+.  ++.|++++ ...+..
T Consensus       310 L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~  386 (528)
T 4b8j_A          310 VGNIVTGDDAQTQCIIDH--QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL-QTAEFD  386 (528)
T ss_dssp             HHHHTTSCHHHHHHHHTT--THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH-HHSCHH
T ss_pred             HHHHHcCCHHHHHHHHHh--hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH-hcCCHH
Confidence            9999986  556678888  9999999999999 9999999999999999 677777777776  99999999 566899


Q ss_pred             HHHHHHHHHHHhhcC-CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHHHH
Q 047123          471 LQEAATDAVLSLLTV-RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRLVA  539 (579)
Q Consensus       471 v~~~a~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i~~  539 (579)
                      ++..|+.+|++++.. .+.....+.+.++++.|+++|...++. .+..++.+|.++.....          ...+..+.+
T Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~  465 (528)
T 4b8j_A          387 IKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR-IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDE  465 (528)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence            999999999999976 334444444689999999999998877 78888888988874321          125788889


Q ss_pred             cCchHHHHhhhccCCchHHH
Q 047123          540 AGAYQHLQKLAETEVPGAKK  559 (579)
Q Consensus       540 ~g~~~~L~~L~~~~~~~ak~  559 (579)
                      .|++..|..|.+++++..++
T Consensus       466 ~~~~~~l~~L~~~~~~~v~~  485 (528)
T 4b8j_A          466 AEGLEKIENLQSHDNNEIYE  485 (528)
T ss_dssp             TTHHHHHHHGGGCSSHHHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHH
Confidence            99999999999888876543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.8e-35  Score=325.67  Aligned_cols=391  Identities=18%  Similarity=0.203  Sum_probs=332.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh-hhH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND-ESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~-~~~  240 (579)
                      .+++.++.++.+.+...+..|++++...+.+ +.++..+.+.|+ ++|+.+++ +++..+|..|+.+|++++.+.. +..
T Consensus       290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~~~~d~~  366 (810)
T 3now_A          290 GILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYH-SKNDGIRVRALVGLCKLGSYGGQDAA  366 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTT-CSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred             chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHc-CCCHHHHHHHHHHHHHhccccccCcc
Confidence            4689999999999999999999999997754 889999999875 99999999 9999999999999999986222 233


Q ss_pred             HHHHhcCC----HHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123          241 KIVFEEGG----LGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIR  313 (579)
Q Consensus       241 ~~i~~~g~----l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~  313 (579)
                      ...+++|.    ++.|+++|.++  +.++++.|+++|.+|+.+++.++.++. .|+++.|+.+++++++.++..++++|.
T Consensus       367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~  446 (810)
T 3now_A          367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV  446 (810)
T ss_dssp             CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34444554    55677888877  889999999999999999999999985 799999999999999999999999999


Q ss_pred             HhhcChh------------------------------hH---HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123          314 NIAAVED------------------------------IK---AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG  360 (579)
Q Consensus       314 nLs~~~~------------------------------~~---~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~  360 (579)
                      |++...+                              ++   ..+++.|++|.|+.++.++++.+++.|+++|.|++. +
T Consensus       447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d  525 (810)
T 3now_A          447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-L  525 (810)
T ss_dssp             HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-S
T ss_pred             HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C
Confidence            9997431                              23   677899999999999999999999999999999996 4


Q ss_pred             hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH----HhhcCcHHHHHHHHHhcC-CHHHHHHH
Q 047123          361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI----LSSTTSFIIQLGEFIKRG-NVLLQQVS  435 (579)
Q Consensus       361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l----~~~~~g~i~~L~~lL~~~-~~~v~~~A  435 (579)
                      +..|..+++.|+++.|+.++.+++.  ..++.|+++|.||+...+....    ...  |++++|+.+|.++ +...+..|
T Consensus       526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~--~aIppLv~LL~~~~~~l~~~eA  601 (810)
T 3now_A          526 KELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGITINPEVSFSGQRSL--DVIRPLLNLLQQDCTALENFES  601 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCHHHHTTTHHHH--HTHHHHHHTTSTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCChhhhhcchhhh--cHHHHHHHHhCCCCcHHHHHHH
Confidence            5689999999999999999998876  8999999999999987222221    124  7899999999866 44556789


Q ss_pred             HHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh
Q 047123          436 SSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA  512 (579)
Q Consensus       436 ~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  512 (579)
                      +++|.||+ .+++++..+.++  ++.|+.++ .+.+..++..|+++|+||+..++.+..++...++++.|+.++++.+..
T Consensus       602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~  680 (810)
T 3now_A          602 LMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE  680 (810)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence            99999999 567888888887  99999999 677899999999999999998888888873368899999999988766


Q ss_pred             hhhHHHHHHHHHHhC-CCChhHHHHHHH-cCchHHHHhhhccCCchHH-HHHHHH
Q 047123          513 LNKKFPVMVTAAVLG-GGSNGCRKRLVA-AGAYQHLQKLAETEVPGAK-KVLQRL  564 (579)
Q Consensus       513 ~~k~~av~~L~~L~~-~~~~~~r~~i~~-~g~~~~L~~L~~~~~~~ak-~~~~~l  564 (579)
                       .++.|+++|.+++. ++.  ..+.+++ .|+++.|++|+.++++..+ .++..+
T Consensus       681 -vq~~Aa~ALanLt~~s~~--~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL  732 (810)
T 3now_A          681 -TATACAGALAIITSVSVK--CCEKILAIASWLDILHTLIANPSPAVQHRGIVII  732 (810)
T ss_dssp             -HHHHHHHHHHHHHHHCHH--HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCCCHH--HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence             89999999999998 444  7788888 9999999999999887654 444443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=300.95  Aligned_cols=359  Identities=17%  Similarity=0.183  Sum_probs=289.5

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC------------CCHHHHHHHHHHH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH------------HQSSIREQAVLAL  229 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~------------~~~~~~~~A~~aL  229 (579)
                      ..++.|+..+.+.+.+.   ..+.|..+.. ++..+..+++.|++|.|+++|+ .            +++++|..|+++|
T Consensus        32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~-~~~~~~~~~~~~~~~~~~~~~a~~al  106 (458)
T 3nmz_A           32 EMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLH-GNDKDSVLLGNSRGSKEARARASAAL  106 (458)
T ss_dssp             -------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHT-CTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHh-cccccccccccccCCHHHHHHHHHHH
Confidence            34778888888777663   5666666654 5567788999999999999998 5            3379999999999


Q ss_pred             HHhhccChhhHHHHHhcCCH----------HHHHHHHccCC--HH-----HHH-------HHHHHHHHhcCCCccHHHHH
Q 047123          230 SIIVSANDESRKIVFEEGGL----------GPLLRILETGS--MP-----LKE-------KAAIGVEAITTDPENAWAIS  285 (579)
Q Consensus       230 ~~La~~~~~~~~~i~~~g~l----------~~Lv~lL~~~~--~~-----v~~-------~aa~~L~~Ls~~~~~~~~i~  285 (579)
                      .||+...++......+.|++          +.+++++.+..  .+     +++       .|+++|.|++.++++|..+.
T Consensus       107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~  186 (458)
T 3nmz_A          107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN  186 (458)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999888888887777777          66777777642  22     444       99999999999999999999


Q ss_pred             hcCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcChh-hHHHHHH-cCCHHHHHHHhcCCCHHHHHHHHHH
Q 047123          286 AYGGVSVLIEAFRS-----------GTALTQSHAVGAIRNIAAVED-IKAALAE-EGAVPVLVQSLTSSSNLAQENAADC  352 (579)
Q Consensus       286 ~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLs~~~~-~~~~l~~-~g~v~~Lv~lL~~~~~~v~~~a~~~  352 (579)
                      +.|++++|+.++..           .++.+++.|+++|.||+..++ ++..+.. .|+||.|+.+|.++++++++.++++
T Consensus       187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a  266 (458)
T 3nmz_A          187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV  266 (458)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999952           245789999999999998654 6666654 5569999999999999999999999


Q ss_pred             HHHHhcC-ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc-c-hhHHHHH-hhcCcHHHHHHHHHhcCC
Q 047123          353 IATLAAS-GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL-S-DSAARIL-SSTTSFIIQLGEFIKRGN  428 (579)
Q Consensus       353 L~~La~~-~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~-~-~~~~~l~-~~~~g~i~~L~~lL~~~~  428 (579)
                      |.||+.. ++..|..+.+.|+++.|++++....+ ..+++.|+++||||+. . +++..+. ..  |+++.|+.+|.+++
T Consensus       267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~-~~v~~~A~~aL~nLs~~~~~nk~~I~~~~--Gal~~Lv~LL~~~~  343 (458)
T 3nmz_A          267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKK-ESTLKSVLSALWNLSAHCTENKADICAVD--GALAFLVGTLTYRS  343 (458)
T ss_dssp             HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHCHHHHHHHHHST--THHHHHHHHTTCCC
T ss_pred             HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHHhc--CcHHHHHHHhcCCC
Confidence            9999985 56789999999999999998654332 4899999999999998 4 5566666 67  99999999998775


Q ss_pred             H----HHHHHHHHHHHHhc----CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhccc
Q 047123          429 V----LLQQVSSSLLGNLS----ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKS  498 (579)
Q Consensus       429 ~----~v~~~A~~aL~~L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~  498 (579)
                      .    ++++.|+++|+||+    .++++++.+.+.  ++.|+.+| .+.+..+++.|+.+|+||+...+..+..+.+.|+
T Consensus       344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  422 (458)
T 3nmz_A          344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA  422 (458)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH
T ss_pred             CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            4    59999999999999    488999999888  99999999 7778999999999999999654444444457999


Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          499 VMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       499 i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      |++|+++|.+++.. .++.++++|.+|+.+.+
T Consensus       423 I~~Lv~LL~s~~~~-v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          423 VSMLKNLIHSKHKM-IAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHTTTTCSSHH-HHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHhCCCHH-HHHHHHHHHHHHHcCCH
Confidence            99999999988777 89999999999998765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.5e-33  Score=301.99  Aligned_cols=390  Identities=16%  Similarity=0.173  Sum_probs=340.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChh
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~  238 (579)
                      ...++.++..|++++++.+..|+..|..++... ......+++.|++|.|+++|. ++ ++.+|..|+++|.+++..+++
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHH
Confidence            346899999999999999999999999997643 455677889999999999999 87 899999999999999986778


Q ss_pred             hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      .+..++..|+++.|+++|.++++.+++.|+++|.+|+.+ ++++..+...|+++.|+.++.+.++.++..++++|.+|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            899999999999999999999999999999999999975 5788888999999999999999999999999999999998


Q ss_pred             Ch-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123          318 VE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA  396 (579)
Q Consensus       318 ~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a  396 (579)
                      +. .........++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.+.+.  .++..|+++
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~--~v~~~a~~~  322 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST--LVQTPALRA  322 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh--hhHHHHHHH
Confidence            64 444456678999999999999999999999999999998877777888889999999999987654  899999999


Q ss_pred             HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      |.+++.+  .....++..  |+++.|+.+|.+++..++..|+++|.+|+ .+++..+.+.+.  ++.|+++| ...+..+
T Consensus       323 L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v  399 (530)
T 1wa5_B          323 VGNIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL-EVAEYKT  399 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHSCHHH
T ss_pred             HHHHHcCCHHHHHHHHHc--chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCHHH
Confidence            9999986  456667788  99999999999999999999999999999 677777777766  99999999 6678999


Q ss_pred             HHHHHHHHHHhhcCC----cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHH
Q 047123          472 QEAATDAVLSLLTVR----SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRL  537 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~----~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i  537 (579)
                      +..|+.+|++++...    ...+.++ +.++++.|+++|...++. .+..++.+|.++.....          ...+..+
T Consensus       400 ~~~a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~-v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l  477 (530)
T 1wa5_B          400 KKEACWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNINENADFI  477 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence            999999999998753    3445555 589999999999988776 78888888888875321          2256788


Q ss_pred             HHcCchHHHHhhhccCCchHH
Q 047123          538 VAAGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       538 ~~~g~~~~L~~L~~~~~~~ak  558 (579)
                      .+.|+++.|..|.++++++.+
T Consensus       478 ~~~g~~~~L~~L~~~~~~~v~  498 (530)
T 1wa5_B          478 EKAGGMEKIFNCQQNENDKIY  498 (530)
T ss_dssp             HHTTHHHHHHGGGGCSCHHHH
T ss_pred             HHcCcHHHHHHHHcCCCHHHH
Confidence            999999999999998887653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.9e-33  Score=299.92  Aligned_cols=360  Identities=15%  Similarity=0.195  Sum_probs=316.5

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .|+.|+.+|+. ++++.+..|+++|.++++.++++.+.+++.|+||.|+++|+ +++.++++.|+++|++|+.++++++.
T Consensus       101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~  179 (510)
T 3ul1_B          101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRD  179 (510)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999975 56899999999999999999999999999999999999999 99999999999999999996789999


Q ss_pred             HHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHH-HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          242 IVFEEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      .+.+.|++++|+.+|...     ...+.+.++++|.+++.+..... .....++++.|+.++.++++.++..++++|.+|
T Consensus       180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L  259 (510)
T 3ul1_B          180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL  259 (510)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999875     35678899999999997654333 333467899999999999999999999999999


Q ss_pred             hcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          316 AAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       316 s~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                      +..+. ....+.+.|+++.|+.++.+.+..++..++.+|+|++..++..+..+.+.|+++.|+.++.+.+.  .+++.|+
T Consensus       260 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~v~~~A~  337 (510)
T 3ul1_B          260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEAT  337 (510)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSH--HHHHHHH
T ss_pred             hhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCH--HHHHHHH
Confidence            98654 45566799999999999999999999999999999999888888999999999999999987765  8999999


Q ss_pred             HHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123          395 LAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKP  468 (579)
Q Consensus       395 ~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~  468 (579)
                      ++|.||+.+  .....+++.  |+++.|+.++.+++.++|..|+++|.|++  .+++....+.+.  ++.|+++| .+.+
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~--g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d  414 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKD  414 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSC
T ss_pred             HHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCC
Confidence            999999987  667778888  99999999999999999999999999999  577888888888  99999999 7888


Q ss_pred             HhHHHHHHHHHHHhhcCC------cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123          469 VGLQEAATDAVLSLLTVR------SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG  529 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~  529 (579)
                      .+++..++.+|.|+....      .....++.+.||+..|-.+..+.+.+ +.+.|..++-+....+
T Consensus       415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~-i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHH-HHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCCc
Confidence            999999999999997531      22445666789999999888877777 7888888887776543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.6e-32  Score=298.56  Aligned_cols=360  Identities=15%  Similarity=0.196  Sum_probs=317.3

Q ss_pred             HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..|+.|+..|+. .+++.+..|+++|.+++..++.....+++.|+||.|+.+|. ++++.+++.|+++|++|+.++++++
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHH
Confidence            368999999975 56899999999999999999999999999999999999999 9999999999999999998778999


Q ss_pred             HHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHH-HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          241 KIVFEEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                      ..+++.|++++|+.+|..+     ...+...++++|.+++.+..... .....++++.|+.++.++++.++..++++|.+
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  277 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            9999999999999999865     35678899999999997654333 33346789999999999999999999999999


Q ss_pred             hhcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123          315 IAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       315 Ls~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      ++..++ ....+++.|+++.|+.++.+.+..++..++.+|+|++.+++..+..+.+.|+++.|+.++.+.+.  .++..|
T Consensus       278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~i~~~a  355 (529)
T 3tpo_A          278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEA  355 (529)
T ss_dssp             HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH--HHHHHH
T ss_pred             hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCH--HHHHHH
Confidence            998654 45667799999999999999999999999999999999888888999999999999999987765  899999


Q ss_pred             HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCC
Q 047123          394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPK  467 (579)
Q Consensus       394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~  467 (579)
                      +++|.||+.+  .....+++.  |+++.|+.++.+++.+++..|+++|+|++  .+++....+.+.  ++.|+++| .+.
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~  432 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAK  432 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCS
T ss_pred             HHHHHHHhcccHHHHHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCC
Confidence            9999999987  567778888  99999999999999999999999999999  577888888888  99999999 788


Q ss_pred             CHhHHHHHHHHHHHhhcC------CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123          468 PVGLQEAATDAVLSLLTV------RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG  528 (579)
Q Consensus       468 ~~~v~~~a~~aL~~L~~~------~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~  528 (579)
                      +.+++..++.+|.++...      ......++.+.||+..|..+..+.+.+ +.+.|..++-+....
T Consensus       433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~-i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEKYFSV  498 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHH-HHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCC
Confidence            999999999999999742      122445666889999999998887777 788888888776543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=6.6e-33  Score=301.35  Aligned_cols=386  Identities=18%  Similarity=0.191  Sum_probs=338.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+.+|++++++.+..|+.+|.+++.+++..+..+.+.|+++.|+++|+ ++++.++..++.+|.+++..+++++..
T Consensus       102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5899999999999999999999999999988888889999999999999999 999999999999999999867899999


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +.+.|+++.|+++|+++ +...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.++..++++|.|++.....
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  260 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence            99999999999999987 45677888999999999999999999999999999999999999999999999999985432


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                      ..  ...|+++.|++++.++++.++..++++|.+++..++..+..+.+.|+++.|++++...+.+..+++.|+++|+||+
T Consensus       261 ~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~  338 (529)
T 1jdh_A          261 QE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             hH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            21  2247899999999999999999999999999998877899999999999999999875433589999999999999


Q ss_pred             cc--h---hHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHh---
Q 047123          402 LS--D---SAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVG---  470 (579)
Q Consensus       402 ~~--~---~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~---  470 (579)
                      ..  +   .+..+...  |+++.|+.+|.+.+ ..++..++++|+|++.+++.+..+.+.  ++.|++++ .+.+.+   
T Consensus       339 ~~~~~~~~~~~~i~~~--~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~  415 (529)
T 1jdh_A          339 SRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL-VRAHQDTQR  415 (529)
T ss_dssp             SSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH-HHHHHHHC-
T ss_pred             cCCchHHHHHHHHHHc--CChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHH-HHHhHHHHH
Confidence            86  2   35678888  99999999999876 599999999999999888888888877  89999988 333333   


Q ss_pred             -------------------HHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCCh
Q 047123          471 -------------------LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSN  531 (579)
Q Consensus       471 -------------------v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~  531 (579)
                                         +++.++.+|++|+....++..+. +.++++.|++++.+++++ .++.+..+|.+|+.++. 
T Consensus       416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~-~~~~v~~l~~ll~~~~~~-v~~~a~~~l~~l~~~~~-  492 (529)
T 1jdh_A          416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE-  492 (529)
T ss_dssp             ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHTTSHH-
T ss_pred             HHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHh-ccCCccHHHHHHcCCchH-HHHHHHHHHHHHhcCHH-
Confidence                               44577788888988766666665 589999999999998877 78889999999986644 


Q ss_pred             hHHHHHHHcCchHHHHhhhccCCchHH
Q 047123          532 GCRKRLVAAGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       532 ~~r~~i~~~g~~~~L~~L~~~~~~~ak  558 (579)
                       .+..|.+.|+++.|.+|+++++++.+
T Consensus       493 -~~~~i~~~~~~~~L~~l~~~~~~~v~  518 (529)
T 1jdh_A          493 -AAEAIEAEGATAPLTELLHSRNEGVA  518 (529)
T ss_dssp             -HHHHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred             -HHHHHHHcCChHHHHHHhcCCCHHHH
Confidence             89999999999999999999988654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.3e-33  Score=295.89  Aligned_cols=358  Identities=14%  Similarity=0.214  Sum_probs=293.2

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWA  283 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~  283 (579)
                      .+|.|+++|+ ++++++|..|+.+|.+++..++.++..+++.|++|+|+++|+++++.++..|+++|.+|+.+ ++++..
T Consensus         3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999 99999999999999999985667788999999999999999999999999999999999975 899999


Q ss_pred             HHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh--------cCC--------CHHHH
Q 047123          284 ISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL--------TSS--------SNLAQ  346 (579)
Q Consensus       284 i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL--------~~~--------~~~v~  346 (579)
                      +++.|+++.|+++|. ++++.+++.++++|+||+.+++++..+++ |++|.|+.++        .++        ++.++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999999 88999999999999999999999999999 9999999999        222        45677


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc-h----------------
Q 047123          347 ENAADCIATLAASGEYFRLLIIQE-RGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS-D----------------  404 (579)
Q Consensus       347 ~~a~~~L~~La~~~~~~r~~l~~~-g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~-~----------------  404 (579)
                      ..++++|.||+.. +..+..+.+. |+++.|+.++.++    ..+.+.++.++.+|+||+.. +                
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 6788899987 9999999999862    12236899999999999742 0                


Q ss_pred             -----------------------------------hHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-Chh
Q 047123          405 -----------------------------------SAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLSI-SDG  447 (579)
Q Consensus       405 -----------------------------------~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~~-~~~  447 (579)
                                                         ..+.++..  |+++.|+.+|.+. ++.+++.|+++|.||+. +..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS--DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc--chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               11123344  7889999999754 68999999999999993 322


Q ss_pred             ----h-HHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-----hhh
Q 047123          448 ----N-KRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-----LNK  515 (579)
Q Consensus       448 ----~-~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-----~~k  515 (579)
                          . +..+.+.  ++.|+++| .+.+.+++..|+.+|.||+.+..++. .+. .+++++|+++|...++.     ...
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~~~~-~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHR-VMG-NQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGGGHH-HHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHHHHH-HHH-HhhhHHHHHhccCCCCCCCCcHHHH
Confidence                2 2233334  99999999 77789999999999999998765554 443 57999999999887542     245


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchHHH----HHHHHh-cCcchh
Q 047123          516 KFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGAKK----VLQRLA-GNRLKN  571 (579)
Q Consensus       516 ~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~ak~----~~~~l~-~~~~~~  571 (579)
                      ..++.+|.++..... +.++.+.+.|+++.|++|+.++ ++.+++    +++.++ ...||+
T Consensus       395 ~~~l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          395 SSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence            577777888875443 4788889999999999999998 776654    444444 344444

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.6e-32  Score=302.13  Aligned_cols=388  Identities=18%  Similarity=0.187  Sum_probs=341.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+.+|++++++++..|+.+|.+++..++..+..+.+.|+++.|+++|+ ++++.++..++.+|.+++..+++++..
T Consensus        99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A           99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC-cCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5899999999999999999999999999988888888999999999999999 889999999999999999768899999


Q ss_pred             HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +++.|+++.|+++|++++ ..+++.++.+|.+|+.+++++..+.+.|+++.|+.++.+++..++..++++|.|++.....
T Consensus       178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred             HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence            999999999999999874 6788999999999999999999999999999999999999999999999999999874322


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                      .  ....++++.|+.++.++++.++..++++|.+|+..++..+..+.+.|+++.|+.++......+.+++.|+++|+||+
T Consensus       258 ~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~  335 (644)
T 2z6h_A          258 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  335 (644)
T ss_dssp             C--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            1  11236899999999999999999999999999998878899999999999999999875433489999999999999


Q ss_pred             cc-h----hHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC-------
Q 047123          402 LS-D----SAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP-------  466 (579)
Q Consensus       402 ~~-~----~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~-------  466 (579)
                      .. .    .+..+...  |+++.|+.+|.+.+ ..++..|+++|+||+.+++.+..+.+.  ++.|++++...       
T Consensus       336 ~~~~~~~~~q~~v~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~  413 (644)
T 2z6h_A          336 SRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  413 (644)
T ss_dssp             SSSTTHHHHHHHHHHT--THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCchHHHHHHHHHHc--cChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhH
Confidence            75 2    23447778  99999999998875 699999999999999888888888777  99999988321       


Q ss_pred             --------------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123          467 --------------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG  532 (579)
Q Consensus       467 --------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~  532 (579)
                                    .+.++++.++.+|++|+....++..+. +.++++.|+++|.+.+++ +++.++.+|.+++.++.  
T Consensus       414 a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~-v~~~a~~aL~~l~~~~~--  489 (644)
T 2z6h_A          414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE--  489 (644)
T ss_dssp             ----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSHH--
T ss_pred             hhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHH-hCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHH--
Confidence                          245788899999999998876666555 589999999999988877 78899999999987644  


Q ss_pred             HHHHHHHcCchHHHHhhhccCCchHHH
Q 047123          533 CRKRLVAAGAYQHLQKLAETEVPGAKK  559 (579)
Q Consensus       533 ~r~~i~~~g~~~~L~~L~~~~~~~ak~  559 (579)
                      .+..|.+.|+++.|+++++++++..++
T Consensus       490 ~~~~i~~~g~l~~L~~ll~~~~~~vr~  516 (644)
T 2z6h_A          490 AAEAIEAEGATAPLTELLHSRNEGVAT  516 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence            899999999999999999998886643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.6e-31  Score=290.86  Aligned_cols=361  Identities=17%  Similarity=0.210  Sum_probs=323.1

Q ss_pred             HHHHHHHHHhccCC-HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIGG-VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..|+.|+.+|++++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|. ++++.+++.|+++|++|+.+.+.++
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhH
Confidence            36899999999987 999999999999999998999999999999999999999 9999999999999999998668899


Q ss_pred             HHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          241 KIVFEEGGLGPLLRIL-ETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL-~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                      ..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999 567899999999999999976554455556899999999999999999999999999999865


Q ss_pred             hh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC-CCChHHHHHHHHHH
Q 047123          320 DI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS-TSSIVTVENALLAI  397 (579)
Q Consensus       320 ~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~-~~~~~~~~~A~~aL  397 (579)
                      +. ...+.+.|+++.|+.+|.+.++.++..++++|++++..++.....+.+.|+++.|+.++.+. +.  .++..|+++|
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~--~v~~~A~~~L  353 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK--SIKKEACWTI  353 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH--HHHHHHHHHH
Confidence            54 46777999999999999999999999999999999998888888899999999999999977 44  8999999999


Q ss_pred             HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      .||+..  +....++..  |+++.|+.+|.+++..++..|+++|.+++  .+++....+.+.  ++.|+.+| ...+..+
T Consensus       354 ~nl~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~d~~v  430 (528)
T 4b8j_A          354 SNITAGNKDQIQAVINA--GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL-ICPDIRI  430 (528)
T ss_dssp             HHHHTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred             HHHHCCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHH-cCCCHHH
Confidence            999976  556778888  99999999999999999999999999999  368888888877  99999999 7788999


Q ss_pred             HHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123          472 QEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG  529 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~  529 (579)
                      +..++.+|.+|+...+.           ....+.+.+|+..|..++.+.+++ +++.+..++.++...+
T Consensus       431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~-v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE-IYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH-HHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCCc
Confidence            99999999999865433           456666789999999998888777 8889999998887654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.2e-32  Score=297.20  Aligned_cols=386  Identities=15%  Similarity=0.151  Sum_probs=332.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..++.|+.+|+++++.++..|+..|.+++.++ .++..+. ..|+++.|+++|..+++++++..|+.+|.+++. +++++
T Consensus        17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~   94 (529)
T 1jdh_A           17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGL   94 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred             hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhH
Confidence            36899999999999999999999999999755 4555555 468999999999723489999999999999999 88899


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~  318 (579)
                      ..+++.|++++|+++|+++++.++..++++|.+|+.+ ++.+..+.+.|+++.|+.++.+++..++..++.+|.+++. +
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999975 5678888899999999999999999999999999999997 6


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      ++++..+.+.|+++.|+.++.++ ....+..++.+|.+++..+ ..+..+.+.|+++.|+.++.+.+.  .++..++++|
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~--~~~~~a~~~L  251 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL  251 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCCh--HHHHHHHHHH
Confidence            88999999999999999999655 4578888999999999754 568899999999999999988754  8999999999


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccC-CCCHhHHH
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMEC-PKPVGLQE  473 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~-~~~~~v~~  473 (579)
                      .+|+....... ...  |+++.|+.++.+.+++++..|+++|++|+ .+++.+..+.+.  ++.|++++.+ +.+..+++
T Consensus       252 ~~l~~~~~~~~-~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~  328 (529)
T 1jdh_A          252 RNLSDAATKQE-GME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  328 (529)
T ss_dssp             HHHHTTCTTCS-CCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCChhhH-HHH--hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence            99998721111 123  78999999999999999999999999999 567888888887  9999999943 34489999


Q ss_pred             HHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123          474 AATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA  550 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~  550 (579)
                      .++.+|+||+..++.   .+..+.+.++++.|+++|.+++....++.+++++.+++.+..  ++..+.+.|+++.|++++
T Consensus       329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~~i~~L~~ll  406 (529)
T 1jdh_A          329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh--hhHHHHHcCCHHHHHHHH
Confidence            999999999876443   233444689999999999987753488899999999998766  889999999999999999


Q ss_pred             ccCCchH
Q 047123          551 ETEVPGA  557 (579)
Q Consensus       551 ~~~~~~a  557 (579)
                      ..+++..
T Consensus       407 ~~~~~~v  413 (529)
T 1jdh_A          407 VRAHQDT  413 (529)
T ss_dssp             HHHHHHH
T ss_pred             HHHhHHH
Confidence            8755443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=288.46  Aligned_cols=320  Identities=17%  Similarity=0.185  Sum_probs=278.0

Q ss_pred             HHHHHHHHhcc------------CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcH----------HHHHHhhccCCC--
Q 047123          163 FIRDIFTRLQI------------GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNV----------GYLISLLDFHHQ--  218 (579)
Q Consensus       163 ~v~~Lv~~L~~------------~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v----------~~Lv~LL~~~~~--  218 (579)
                      .++.|+.+|+.            ++++.+.+|+++|.+++..+++......+.+.+          +.+++++. +..  
T Consensus        71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~  149 (458)
T 3nmz_A           71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQE-AHEPG  149 (458)
T ss_dssp             CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTSSS
T ss_pred             CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHH-hhccc
Confidence            47889999985            447999999999999999998888887788877          77777777 542  


Q ss_pred             HH-----HHH-------HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhc
Q 047123          219 SS-----IRE-------QAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-----------GSMPLKEKAAIGVEAIT  275 (579)
Q Consensus       219 ~~-----~~~-------~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-----------~~~~v~~~aa~~L~~Ls  275 (579)
                      .+     +++       +|+++|.+++. ++++|..+++.|++++|+.+|..           .++.+++.|+++|.+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence            22     555       99999999999 89999999999999999999952           24678999999999999


Q ss_pred             CCCc-cHHHHHhc-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHH
Q 047123          276 TDPE-NAWAISAY-GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSL-TSSSNLAQENAA  350 (579)
Q Consensus       276 ~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~  350 (579)
                      .+.+ ++..+... |.|+.|+.+|.++++++++.++++|+||+..  ++++..+++.|+|+.|+++| .++++.+++.++
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            7654 67777654 5599999999999999999999999999984  67899999999999999975 667889999999


Q ss_pred             HHHHHHhcCChhhHHHHH-hcCcHHHHHHhhccCCCCh--HHHHHHHHHHHHccc----c-hhHHHHHhhcCcHHHHHHH
Q 047123          351 DCIATLAASGEYFRLLII-QERGLQRLMHLIQDSTSSI--VTVENALLAISSLSL----S-DSAARILSSTTSFIIQLGE  422 (579)
Q Consensus       351 ~~L~~La~~~~~~r~~l~-~~g~i~~Lv~ll~~~~~~~--~~~~~A~~aL~~L~~----~-~~~~~l~~~~~g~i~~L~~  422 (579)
                      .+|+||+...+..+..+. ..|+++.|++++.+.++..  .+++.|+++|+||+.    . +.+..+++.  |+++.|+.
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~--G~i~~Lv~  386 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN--NCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc--ccHHHHHH
Confidence            999999985555677777 7999999999998776421  489999999999996    3 677888899  99999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123          423 FIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       423 lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~  487 (579)
                      +|.+++..++++|+++|+||+ .+++++..+.+.  ++.|++++ .+++..+++.|+.+|.||+...+
T Consensus       387 LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL-~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          387 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999 789999999998  99999999 78899999999999999997643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=8.4e-32  Score=286.42  Aligned_cols=386  Identities=16%  Similarity=0.152  Sum_probs=330.3

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhh-CcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKE-GNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~-g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ++.++..|++++++.|..|+..|+.++. ........+++. |+++.|+++|+ ++ ++.+|..|+++|.+++..+++..
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-RKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-CTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-CCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            7889999999999999999999999865 222333556666 99999999999 87 89999999999999998667888


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~  318 (579)
                      ..+++.|+++.|+++|+++++.+++.|+++|.+++.+ ++++..+.+.|+++.|+.++.+ .+..++..++++|.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            8888999999999999999999999999999999975 4688888899999999999996 6899999999999999975


Q ss_pred             h--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123          319 E--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA  396 (579)
Q Consensus       319 ~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a  396 (579)
                      .  ..+..++ .++++.|+.++.++++.++..++++|.+++...+..+..+.+.|+++.|+.++.+.+.  .++..|+++
T Consensus       181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~  257 (450)
T 2jdq_A          181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY--KVVSPALRA  257 (450)
T ss_dssp             SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--HHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--hHHHHHHHH
Confidence            3  3333333 7899999999999999999999999999998776777888889999999999986654  899999999


Q ss_pred             HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      |.+++..  .....+++.  |+++.|+.++.+.++.++..|+++|.+++ .+++..+.+.+.  ++.|++++ .+.+..+
T Consensus       258 L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l-~~~~~~v  334 (450)
T 2jdq_A          258 VGNIVTGDDIQTQVILNC--SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL-QTAEFRT  334 (450)
T ss_dssp             HHHHTTSCHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HHSCHHH
T ss_pred             HHHHhhCChHHHHHHHHC--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCHHH
Confidence            9999987  445567788  99999999999999999999999999999 677777777765  99999999 5668999


Q ss_pred             HHHHHHHHHHhhcC-C-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHHHH
Q 047123          472 QEAATDAVLSLLTV-R-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRLVA  539 (579)
Q Consensus       472 ~~~a~~aL~~L~~~-~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i~~  539 (579)
                      |..|+.+|++++.. . ...+.++ +.++++.|+++|...+.. .++.++.+|.+++....          ......+.+
T Consensus       335 ~~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~  412 (450)
T 2jdq_A          335 RKEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSK-IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE  412 (450)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHH-HHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHH
Confidence            99999999999875 3 3344455 689999999999988776 88888988988875332          124578889


Q ss_pred             cCchHHHHhhhccCCchHH
Q 047123          540 AGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       540 ~g~~~~L~~L~~~~~~~ak  558 (579)
                      .|+++.|..|.+++++..+
T Consensus       413 ~g~~~~l~~l~~~~~~~v~  431 (450)
T 2jdq_A          413 AYGLDKIEFLQSHENQEIY  431 (450)
T ss_dssp             HHCHHHHHHHHCHHHHHHH
T ss_pred             cCcHHHHHHHHcCCCHHHH
Confidence            9999999999887766543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=298.74  Aligned_cols=382  Identities=15%  Similarity=0.158  Sum_probs=331.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      .|+.|+.+|+++++.+|..|+..|.+++.+++ ++..+. ..|+++.|+++|. ++ +++++..|+.+|.+|+. +++++
T Consensus        15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~-~~~~~~~~~~A~~~L~~Ls~-~~~~~   91 (644)
T 2z6h_A           15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQ-NTNDVETARCTAGTLHNLSH-HREGL   91 (644)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHh-cCCCHHHHHHHHHHHHHHhc-ChhhH
Confidence            58999999999999999999999999998764 555555 4589999999998 65 89999999999999999 88899


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~  318 (579)
                      ..+.+.|+++.|+++|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.+++++++.++..++.+|.+++. +
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~  171 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  171 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999964 5677788899999999999999999999999999999996 7


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSS-NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      ++++..+.+.|+++.|+.++.+.+ +.+++.++.+|.+++... ..+..+++.|+++.|+.++.+.+.  .++..++++|
T Consensus       172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~a~~~L  248 (644)
T 2z6h_A          172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL  248 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCH--HHHHHHHHHH
T ss_pred             cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCH--HHHHHHHHHH
Confidence            889999999999999999997654 678899999999999754 568999999999999999988754  8999999999


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCC-CHhHHH
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPK-PVGLQE  473 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~-~~~v~~  473 (579)
                      .||+...... ....  ++++.|+.++.+.++.++..|+++|.+|+ .++++++.+.+.  ++.|++++.+.. ...++.
T Consensus       249 ~nL~~~~~~~-~~~~--~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~  325 (644)
T 2z6h_A          249 RNLSDAATKQ-EGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  325 (644)
T ss_dssp             HHHGGGCTTC-CSCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhcchhh-hhhh--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence            9999872111 1223  78999999999999999999999999999 567888888877  999999994433 379999


Q ss_pred             HHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123          474 AATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA  550 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~  550 (579)
                      .|+.+|++|+...+.   .+..+.+.++++.|+++|.+.+....++.++++|.+|+.+..  +++.+++.|+++.|++++
T Consensus       326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~--~~~~i~~~~~i~~Lv~lL  403 (644)
T 2z6h_A          326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLL  403 (644)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH--HHHHHHHcCCHHHHHHHH
Confidence            999999999875432   233344689999999999987643488999999999998876  889999999999999998


Q ss_pred             ccCCc
Q 047123          551 ETEVP  555 (579)
Q Consensus       551 ~~~~~  555 (579)
                      ..++.
T Consensus       404 ~~~~~  408 (644)
T 2z6h_A          404 VRAHQ  408 (644)
T ss_dssp             HHHHH
T ss_pred             hccch
Confidence            77543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.2e-30  Score=284.04  Aligned_cols=362  Identities=15%  Similarity=0.170  Sum_probs=322.9

Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..++.|+..|+++ +++++..|+.+|.+++..++.....++..|+++.|+.+|+ ++++.+++.|+++|++|+..+++++
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccch
Confidence            3689999999997 8999999999999999988899999999999999999999 9999999999999999999568899


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-  318 (579)
                      ..++..|++++|+.+|.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++++|.+++.. 
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999754 4445566689999999999999999999999999999974 


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      ++....+.+.|+++.|+.++.+.++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+.  .++..|+++|.
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~vr~~A~~aL~  366 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE--NIKKEACWTIS  366 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH--HHHHHHHHHHH
Confidence            5667778899999999999999999999999999999998887778888899999999999998754  89999999999


Q ss_pred             Hcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCh--hhHHHHHHH--HHHHHHhccCCCCHh
Q 047123          399 SLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISD--GNKRAVASC--MGSLIKLMECPKPVG  470 (579)
Q Consensus       399 ~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~--~~~~~i~~~--v~~Lv~lL~~~~~~~  470 (579)
                      +++.+  +....+++.  |+++.|+.+|.++++.++..|+++|.+++  .++  +..+.+.+.  ++.|+.++ ...+..
T Consensus       367 ~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~  443 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDA--NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNR  443 (530)
T ss_dssp             HHTTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHH
T ss_pred             HHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH-hCCCHH
Confidence            99976  556677888  99999999999999999999999999998  345  677777776  99999999 677899


Q ss_pred             HHHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          471 LQEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       471 v~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ++..++.+|.+++...++           ....+.+.+|++.|..++.++++. +++.+..++.++...+.
T Consensus       444 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~-v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK-IYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH-HHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCccc
Confidence            999999999999865432           334455789999999999888877 88899999998887654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.5e-31  Score=301.33  Aligned_cols=395  Identities=19%  Similarity=0.201  Sum_probs=343.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .|+.|+.+|+++++.++..|+.+|.+++...+..+..+.+.|+++.|+++|+ +++..+++.++.+|.+++..+++++..
T Consensus       235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence            6899999999999999999999999999988888899999999999999999 899999999999999999768899999


Q ss_pred             HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +++.|+++.|+++|++++ ...++.++.+|.+|+.+++++..+++.|+++.|+.++.+++..++..++++|.+++.....
T Consensus       314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~  393 (780)
T 2z6g_A          314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  393 (780)
T ss_dssp             HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence            999999999999999875 5567789999999999999999999999999999999999999999999999999875422


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                      .  ....++++.|+.++.+.++.++..++++|.+|+..++..+..+.+.|+++.|++++......+.++..|+++|+||+
T Consensus       394 ~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~  471 (780)
T 2z6g_A          394 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  471 (780)
T ss_dssp             C--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            1  11246899999999999999999999999999998878889999999999999999874432479999999999999


Q ss_pred             cc--h---hHHHHHhhcCcHHHHHHHHHhcCCH-HHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC-------
Q 047123          402 LS--D---SAARILSSTTSFIIQLGEFIKRGNV-LLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP-------  466 (579)
Q Consensus       402 ~~--~---~~~~l~~~~~g~i~~L~~lL~~~~~-~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~-------  466 (579)
                      ..  +   .+..+...  |+++.|+.+|.+.+. .++..|+++|+||+.+++.+..+.+.  ++.|+++|...       
T Consensus       472 ~~~~~~~~~~~~v~~~--~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~  549 (780)
T 2z6g_A          472 SRHQDAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  549 (780)
T ss_dssp             SSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCchHHHHHHHHHHc--CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHH
Confidence            75  2   24567777  999999999988775 99999999999999888888888776  89999988321       


Q ss_pred             --------------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123          467 --------------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG  532 (579)
Q Consensus       467 --------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~  532 (579)
                                    .+.++++.++.+|++|+....++..+. +.++++.|+++|.+.++. ++..++.+|.+|+.++.  
T Consensus       550 aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~-v~~~a~~aL~~L~~~~~--  625 (780)
T 2z6g_A          550 TSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE--  625 (780)
T ss_dssp             TC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTCCHHHHHHGGGCSCHH-HHHHHHHHHHHHHTSHH--
T ss_pred             HhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHH-HCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHhcCHH--
Confidence                          125678899999999998766666555 689999999999998877 88889999999987655  


Q ss_pred             HHHHHHHcCchHHHHhhhccCCchHH----HHHHHHhc
Q 047123          533 CRKRLVAAGAYQHLQKLAETEVPGAK----KVLQRLAG  566 (579)
Q Consensus       533 ~r~~i~~~g~~~~L~~L~~~~~~~ak----~~~~~l~~  566 (579)
                      .+..|.+.|+++.|++|++++++..+    .++.++..
T Consensus       626 ~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          626 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999999887654    44555554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.2e-30  Score=275.50  Aligned_cols=360  Identities=15%  Similarity=0.195  Sum_probs=317.7

Q ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++.|+..|+++ +++++..|+.+|.+++..+++....+.+.|+++.|+++|+ ++++.+|+.|+.+|.+++..+++++.
T Consensus        65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            689999999998 8999999999999999988888888889999999999999 99999999999999999996678999


Q ss_pred             HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          242 IVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      .+++.|+++.|++++.+ .+..++..++++|.+|+.+  +.....+. .++++.|+.++.++++.++..++++|.+++..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            99999999999999996 6899999999999999964  33333333 78999999999999999999999999999984


Q ss_pred             -hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          319 -EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       319 -~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                       ++....+.+.|+++.|+.++.+.++.++..++++|.+++..++..+..+.+.|+++.|+.++.+.+.  .++..|+++|
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~vr~~a~~~L  300 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE--SIKKEACWTI  300 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH--HHHHHHHHHH
Confidence             5667778899999999999999999999999999999999887777788889999999999988654  8999999999


Q ss_pred             HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      .+++.+  .....+++.  |+++.|+.++.++++.++..|+++|.+++  .+++..+.+.+.  ++.|++++ ..++..+
T Consensus       301 ~~l~~~~~~~~~~~~~~--~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v  377 (450)
T 2jdq_A          301 SNITAGNRAQIQTVIDA--NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL-TVMDSKI  377 (450)
T ss_dssp             HHHTTSCHHHHHHHHHT--THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG-GSSCHHH
T ss_pred             HHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh-cCCCHHH
Confidence            999975  566678888  99999999999999999999999999998  367777777776  99999999 6678999


Q ss_pred             HHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          472 QEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      +..++.+|.+++...++           ....+.+.+|++.|..++++++.. +++.++.++.++...+.
T Consensus       378 ~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~-v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          378 VQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE-IYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCccc
Confidence            99999999999865432           234555788999999988877666 88999999998886553

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=1e-29  Score=288.06  Aligned_cols=380  Identities=15%  Similarity=0.172  Sum_probs=317.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.++..|++++.+.+..++..+...      ....+ ..|+++.|+.+|. ++++.+|+.|+.+|.+|+. ++.++..
T Consensus       116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i-~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~-~~~~~~~  186 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAEL-ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSK-KEASRHA  186 (780)
T ss_dssp             ----------CCSCHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHH-HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhC-CChhHHH
Confidence            478999999999988888888877643      12233 4899999999999 9999999999999999999 7788887


Q ss_pred             HHhc-CCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-h
Q 047123          243 VFEE-GGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-E  319 (579)
Q Consensus       243 i~~~-g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~  319 (579)
                      +... |+++.|++.|+++ +++++..|+.+|.+|+.+++++..+.+.|+++.|+.+++++++.++..|+++|.||+.. +
T Consensus       187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~  266 (780)
T 2z6g_A          187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE  266 (780)
T ss_dssp             HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence            7754 8999999999876 89999999999999999888999999999999999999999999999999999999985 5


Q ss_pred             hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHH
Q 047123          320 DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS  399 (579)
Q Consensus       320 ~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~  399 (579)
                      +.+..+.+.|+++.|+.++.+.+..++..++.+|.+++..++..+..+.+.|+++.|+.++++.+. ...++.++.+|++
T Consensus       267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~  345 (780)
T 2z6g_A          267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKV  345 (780)
T ss_dssp             THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence            677778899999999999999999999999999999998888889999999999999999998765 4677899999999


Q ss_pred             cccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHH
Q 047123          400 LSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDA  478 (579)
Q Consensus       400 L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~a  478 (579)
                      |+.. ..+..++..  |+++.|+.++.+.+..++..++++|.+|+........+...++.|++++ .+++..++..|+.+
T Consensus       346 Ls~~~~~~~~i~~~--g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL-~~~d~~vr~~A~~a  422 (780)
T 2z6g_A          346 LSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGI  422 (780)
T ss_dssp             HHTSTTHHHHHHHT--THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             hhcChHHHHHHHHh--chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH-cCCCHHHHHHHHHH
Confidence            9988 777888899  9999999999999999999999999999933221111222399999999 78899999999999


Q ss_pred             HHHhhcCCcchhHHHhhcccHHHHHhhcCCC-chhhhhHHHHHHHHHHhCCCCh--hHHHHHHHcCchHHHHhhhccCCc
Q 047123          479 VLSLLTVRSNRKELVRDEKSVMRLMQMLDPK-NEALNKKFPVMVTAAVLGGGSN--GCRKRLVAAGAYQHLQKLAETEVP  555 (579)
Q Consensus       479 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~k~~av~~L~~L~~~~~~--~~r~~i~~~g~~~~L~~L~~~~~~  555 (579)
                      |++|+......+..+.+.++++.|+++|... +.+..+..++.+|.+|+.....  ..+..+.+.|+++.|++++..+.+
T Consensus       423 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~  502 (780)
T 2z6g_A          423 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH  502 (780)
T ss_dssp             HHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh
Confidence            9999987655555555689999999999763 3323889999999999875432  246788999999999999987754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.3e-29  Score=256.33  Aligned_cols=266  Identities=18%  Similarity=0.196  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCC-ccHHHHHh
Q 047123          219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-----------GSMPLKEKAAIGVEAITTDP-ENAWAISA  286 (579)
Q Consensus       219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-----------~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~  286 (579)
                      ...+..|+++|.+++. ++++|..+++.|++++|+.+|..           .++.+++.|+++|.+|+.+. +++..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3555689999999999 89999999999999999999953           24779999999999999765 47777866


Q ss_pred             c-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChh
Q 047123          287 Y-GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEY  362 (579)
Q Consensus       287 ~-g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~  362 (579)
                      . |+|+.|+.+|.++++.+++.++++|+||+..  ++++..+++.|+||.|+++| +++++.+++.++.+|+||+...+.
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            5 4599999999999999999999999999984  67899999999999999974 678899999999999999986656


Q ss_pred             hHHHHH-hcCcHHHHHHhhccCCCCh--HHHHHHHHHHHHccc----c-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123          363 FRLLII-QERGLQRLMHLIQDSTSSI--VTVENALLAISSLSL----S-DSAARILSSTTSFIIQLGEFIKRGNVLLQQV  434 (579)
Q Consensus       363 ~r~~l~-~~g~i~~Lv~ll~~~~~~~--~~~~~A~~aL~~L~~----~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~  434 (579)
                      .+..+. ..|+++.|++++.+.++..  .+++.|+++|+||+.    . +.+..+.+.  |+++.|+.+|++++..+++.
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN--NCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--THHHHHHHHTTCSCHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc--CCHHHHHHHHcCCChHHHHH
Confidence            677887 7999999999998766421  489999999999996    4 677888898  99999999999999999999


Q ss_pred             HHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123          435 SSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN  488 (579)
Q Consensus       435 A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~  488 (579)
                      |+++|+||+ .+++.++.+.+.  ++.|++++ .+++..+++.|+.+|.||+...+.
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999 789999999988  99999999 788899999999999999987554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.5e-29  Score=257.20  Aligned_cols=261  Identities=20%  Similarity=0.242  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123          177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-----------HQSSIREQAVLALSIIVSANDESRKIVFE  245 (579)
Q Consensus       177 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-----------~~~~~~~~A~~aL~~La~~~~~~~~~i~~  245 (579)
                      ..+.+|+.+|.+++.+ +++++.+++.|+++.|+.+|. .           .++.+|+.|+++|.+|+..+++++..+..
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~-~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQ-VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHh-cccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456899999999875 799999999999999999994 2           24789999999999999855668877765


Q ss_pred             c-CCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123          246 E-GGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEA-FRSGTALTQSHAVGAIRNIAA-VED  320 (579)
Q Consensus       246 ~-g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLs~-~~~  320 (579)
                      . |+||+|+++|+++++++++.|+++|.+|+..  ++++..+.+.|+|+.|+.+ +.+++..+++.++.+|+||+. .++
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            5 5599999999999999999999999999974  5789999999999999997 466789999999999999999 778


Q ss_pred             hHHHHH-HcCCHHHHHHHhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123          321 IKAALA-EEGAVPVLVQSLTSSSN----LAQENAADCIATLAA---SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVEN  392 (579)
Q Consensus       321 ~~~~l~-~~g~v~~Lv~lL~~~~~----~v~~~a~~~L~~La~---~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~  392 (579)
                      ++..++ ..|+++.|+.+|.++++    .+++.++++|.|++.   .++..+..+.+.|+++.|++++.+++.  .+++.
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~  282 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL--TIVSN  282 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH--HHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh--HHHHH
Confidence            888888 79999999999987654    599999999999997   577789999999999999999998775  89999


Q ss_pred             HHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          393 ALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       393 A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      |+++|+||+..  +.+..+++.  |+++.|+.++++++..+++.|+++|.||+
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~  333 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLM  333 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            99999999964  678889999  99999999999999999999999999999

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=9.3e-26  Score=220.78  Aligned_cols=237  Identities=22%  Similarity=0.299  Sum_probs=222.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ..+.++..|++++++.+..|+.+|..+...++.++..+.+.|+++.|+++|+ ++++.++..|+.+|.+++..+++++..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3688999999999999999999998877767788889999999999999999 999999999999999999868999999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA-WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~  320 (579)
                      +++.|+++.|+++|+++++.+++.++++|.+|+.+++++ ..+.+.|+++.|+.++.++++.++..++++|.|++. .++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999988888 889999999999999999999999999999999998 567


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      .+..+.+.|+++.|+.++.++++.++..++++|.+++..++..+..+.+.|+++.|+.++.+.++  .+++.|+++|.||
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~A~~~L~~l  249 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS--HHHHTHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH--HHHHHHHHHHHHH
Confidence            77888899999999999999999999999999999998888888899999999999999998876  8999999999999


Q ss_pred             cc
Q 047123          401 SL  402 (579)
Q Consensus       401 ~~  402 (579)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            85

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=2.4e-25  Score=217.24  Aligned_cols=238  Identities=26%  Similarity=0.354  Sum_probs=224.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .|+.|+..|++++++.+..|+.+|.+++..+++++..+.+.|+++.|+++|+ ++++.++..|+.+|.+++..+++++..
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            4789999999999999999999999999999889999999999999999999 999999999999999999955999999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~  320 (579)
                      +++.|+++.|+.+|++++++++..++++|.+|+ .+++++..+.+.|+++.|+.++.++++.++..++++|.|++. .++
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 577899999999999999999999999999999999999998 556


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      .+..+.+.|+++.|+.++.++++.++..++++|.+++..++..+..+.+.|+++.|++++.+.+.  .+++.|+++|+||
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l  239 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS--EVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH--HHHHHHHHHHHHH
Confidence            66888899999999999999999999999999999999888888899999999999999988765  8999999999999


Q ss_pred             ccc
Q 047123          401 SLS  403 (579)
Q Consensus       401 ~~~  403 (579)
                      +..
T Consensus       240 ~~~  242 (252)
T 4hxt_A          240 KSG  242 (252)
T ss_dssp             HHT
T ss_pred             HcC
Confidence            876

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=3.5e-25  Score=216.09  Aligned_cols=235  Identities=25%  Similarity=0.347  Sum_probs=221.3

Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHH
Q 047123          204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAW  282 (579)
Q Consensus       204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~  282 (579)
                      |.++.|+++|+ ++++++|..|+.+|.+++..+++++..+++.|+++.|+++|++++.+++..++++|.+|+.+ ++++.
T Consensus         2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57999999999 99999999999999999985667999999999999999999999999999999999999976 88999


Q ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh-cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123          283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA-AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE  361 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~  361 (579)
                      .+.+.|+++.|+.++.++++.++..++++|.|++ .+++++..+.+.|+++.|++++.++++.++..++++|.+++..++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999999999 578899999999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047123          362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL  439 (579)
Q Consensus       362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL  439 (579)
                      ..+..+.+.|+++.|+.++.+.+.  .++..|+++|.+++..  .....+.+.  |+++.|+.+++++++.++..|+++|
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~~L  236 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPTSAIKAIVDA--GGVEVLQKLLTSTDSEVQKEAQRAL  236 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSBHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHCCCcHHHHHHHHHHH
Confidence            878889999999999999997665  8999999999999985  667778888  9999999999999999999999999


Q ss_pred             HHhc
Q 047123          440 GNLS  443 (579)
Q Consensus       440 ~~L~  443 (579)
                      .||+
T Consensus       237 ~~l~  240 (252)
T 4hxt_A          237 ENIK  240 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9999

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=8.7e-25  Score=213.86  Aligned_cols=237  Identities=20%  Similarity=0.282  Sum_probs=218.7

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENA  281 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~  281 (579)
                      ....+.++++|+ ++++++|..|+.+|.++...+++.+..+++.|+++.|+++|+++++.++..++++|.+++. +++++
T Consensus        11 ~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            346889999999 9999999999999976544377888999999999999999999999999999999999997 78899


Q ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123          282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG  360 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~  360 (579)
                      ..+.+.|+++.|+.++.++++.++..++++|.|++.+++.+ ..+.+.|+++.|+.++.++++.++..++++|.+++..+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999988888 88899999999999999999999999999999999988


Q ss_pred             hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123          361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL  438 (579)
Q Consensus       361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a  438 (579)
                      +..+..+.+.|+++.|++++.+.+.  .++..|+++|.+|+..  +....+++.  |+++.|+.++.++++.++..|+++
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~A~~~  245 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQKQAVKEA--GALEKLEQLQSHENEKIQKEAQEA  245 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHTTTTCSSSHHHHTHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHHHHHhCCCCHHHHHHHHHH
Confidence            8888889999999999999998754  8999999999999965  567778888  999999999999999999999999


Q ss_pred             HHHhcC
Q 047123          439 LGNLSI  444 (579)
Q Consensus       439 L~~L~~  444 (579)
                      |.+|+.
T Consensus       246 L~~l~~  251 (252)
T 4db8_A          246 LEKLQS  251 (252)
T ss_dssp             HHTTC-
T ss_pred             HHHHhc
Confidence            999973

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=224.65  Aligned_cols=383  Identities=12%  Similarity=0.065  Sum_probs=292.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH-H
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR-K  241 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~-~  241 (579)
                      +++.+...+..+..+....++-.+.+.+..++.+|..| ...++++|.++++ +  ..+|..|+-+|..+.. .+... .
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~-~--~~ir~lAavvL~KL~~-~~~~~~~  330 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLN-V--EDVQIYSALVLVKTWS-FTKLTCI  330 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTT-S--GGGHHHHHHHHHHHTG-GGTCTTC
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhc-c--HHHHHHHHHHHHHHhc-CCCCCcC
Confidence            46666667755443444444444444444566777776 5677899999998 5  4788899999999887 33221 1


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCh
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAY-GGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~  319 (579)
                      .+.  ...+.+.+.|..++.+.+..|++.|.+|+.+++.+..++.. |.++.|+.+++. ++..+...++.+|.|++...
T Consensus       331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~  408 (778)
T 3opb_A          331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP  408 (778)
T ss_dssp             CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred             cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence            111  24566777777777777999999999999999999999985 569999999995 77789999999999997622


Q ss_pred             h---------------------------------------hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123          320 D---------------------------------------IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG  360 (579)
Q Consensus       320 ~---------------------------------------~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~  360 (579)
                      +                                       ++..+.+.|+||.|+.++.++++.+++.++++|.+++.. 
T Consensus       409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-  487 (778)
T 3opb_A          409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-  487 (778)
T ss_dssp             CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred             cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence            1                                       345566899999999999999999999999999999975 


Q ss_pred             hhhHHHHHhcCcHHHHHHhhccCCCC-hHHHHHHHHHHHHcccchhHHHHHh--hcCcHHHHHHHHHhc--CC-------
Q 047123          361 EYFRLLIIQERGLQRLMHLIQDSTSS-IVTVENALLAISSLSLSDSAARILS--STTSFIIQLGEFIKR--GN-------  428 (579)
Q Consensus       361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~-~~~~~~A~~aL~~L~~~~~~~~l~~--~~~g~i~~L~~lL~~--~~-------  428 (579)
                      +..|..+++.|+++.|++++.+++.. ...++.|+.+|.+|....+...+..  ...|++++|+.+|..  +.       
T Consensus       488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~  567 (778)
T 3opb_A          488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN  567 (778)
T ss_dssp             GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence            57799999999999999999888641 2389999999999997633333332  112899999999983  21       


Q ss_pred             ----H-HHHHHHHHHHHHhcCC-----hhhHHHHHH-H--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch-hHHHh
Q 047123          429 ----V-LLQQVSSSLLGNLSIS-----DGNKRAVAS-C--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR-KELVR  494 (579)
Q Consensus       429 ----~-~v~~~A~~aL~~L~~~-----~~~~~~i~~-~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~~  494 (579)
                          + -.+..|+.||.||+..     ++.|+.+.. .  ++.|..++ .+++..+|..|+++++||+.+...+ +.+..
T Consensus       568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~  646 (778)
T 3opb_A          568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFN  646 (778)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence                1 2377999999999943     356776665 2  99999999 7778999999999999999877664 34542


Q ss_pred             h-----cccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-CCChhHHHHHHHc-CchHHHHhhhcc--CCchH
Q 047123          495 D-----EKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-GGSNGCRKRLVAA-GAYQHLQKLAET--EVPGA  557 (579)
Q Consensus       495 ~-----~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-~~~~~~r~~i~~~-g~~~~L~~L~~~--~~~~a  557 (579)
                      .     .+++..||.+++..+.+ .++.|.++|.+++. ++.  .++.+++. +++..++.+++.  ++++.
T Consensus       647 ~~~~~~~~rL~lLV~Ll~s~D~~-~r~AAagALAnLts~~~~--ia~~ll~~~~gi~~Ll~lL~~~~~~~~l  715 (778)
T 3opb_A          647 LENPQSLRNFNILVKLLQLSDVE-SQRAVAAIFANIATTIPL--IAKELLTKKELIENAIQVFADQIDDIEL  715 (778)
T ss_dssp             CSSHHHHHHHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHH--HHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred             hcCchhhccHHHHHHHHcCCCHH-HHHHHHHHHHHhcCCChH--HHHHHHHccccHHHHHHHHhccCCCHHH
Confidence            1     22488999999988777 89999999999964 444  66777766 899999999988  56543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.6e-23  Score=225.41  Aligned_cols=381  Identities=16%  Similarity=0.160  Sum_probs=294.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      +++-|...+++  .+.|..|+..|..+..........+  ....+.++++|. .++.+.+..|+..|..++. +++.|+.
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~-~~~~~~~~~AvEgLaYLSl-~~~VKe~  370 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAIS-RRIVPKVEMSVEALAYLSL-KASVKIM  370 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTT-TCCHHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHh-cCCccHHHHHHHHHHHHhC-CHHHHHH
Confidence            45556666654  4678888888888765332211111  225677888887 7777779999999999999 9999999


Q ss_pred             HHhc-CCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc---------------------------------------cH
Q 047123          243 VFEE-GGLGPLLRILET-GSMPLKEKAAIGVEAITTDPE---------------------------------------NA  281 (579)
Q Consensus       243 i~~~-g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~---------------------------------------~~  281 (579)
                      ++.. |.+..|+++++. ++..+...++.+|.||+.+.+                                       ++
T Consensus       371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~  450 (778)
T 3opb_A          371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE  450 (778)
T ss_dssp             HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence            8865 569999999995 677889999999999995322                                       45


Q ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHH---HHHHHHHHHHHHhc
Q 047123          282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNL---AQENAADCIATLAA  358 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~---v~~~a~~~L~~La~  358 (579)
                      ..+.+.|+++.|+.++.++++.+++.++++|.||+.++++|..++++|+++.|+.++.+++..   .+..|+.+|.+++.
T Consensus       451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli  530 (778)
T 3opb_A          451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI  530 (778)
T ss_dssp             HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence            677889999999999999999999999999999999999999999999999999999887654   89999999999985


Q ss_pred             CChhhHHHHHh---cCcHHHHHHhhccCCCC-----------h-HHHHHHHHHHHHcccch------hHHHHHh-hcCcH
Q 047123          359 SGEYFRLLIIQ---ERGLQRLMHLIQDSTSS-----------I-VTVENALLAISSLSLSD------SAARILS-STTSF  416 (579)
Q Consensus       359 ~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~-----------~-~~~~~A~~aL~~L~~~~------~~~~l~~-~~~g~  416 (579)
                      .... ...+..   .|++++|+.+|..+...           + ..+..|+.||.||+..+      .+..++. .  |+
T Consensus       531 s~np-~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~--ga  607 (778)
T 3opb_A          531 FTNP-GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK--VY  607 (778)
T ss_dssp             TSCH-HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH--HH
T ss_pred             cCCH-HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc--CH
Confidence            4322 122211   38999999999832210           1 22779999999999973      2555666 6  89


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhH-HHHH-----HH---HHHHHHhccCCCCHhHHHHHHHHHHHhhc-CC
Q 047123          417 IIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNK-RAVA-----SC---MGSLIKLMECPKPVGLQEAATDAVLSLLT-VR  486 (579)
Q Consensus       417 i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~i~-----~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~-~~  486 (579)
                      ++.|..+|.+++..+|..|+.+++||+.+++.. +.+.     ..   ++.|+.++ ++++.++|..|+++|.+++. .+
T Consensus       608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~  686 (778)
T 3opb_A          608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIP  686 (778)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999888764 2331     21   89999999 88899999999999999965 45


Q ss_pred             cchhHHHhhcccHHHHHhhcCC--CchhhhhHHHHHHHHHHhC----CCChhHHHHHH-HcCchHHHHhhhccCC
Q 047123          487 SNRKELVRDEKSVMRLMQMLDP--KNEALNKKFPVMVTAAVLG----GGSNGCRKRLV-AAGAYQHLQKLAETEV  554 (579)
Q Consensus       487 ~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~k~~av~~L~~L~~----~~~~~~r~~i~-~~g~~~~L~~L~~~~~  554 (579)
                      ...+.++...+|+..+++++.+  .+++ .+..++.++.+++.    +.+.+.-..+. .......|.++++.++
T Consensus       687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~-l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~  760 (778)
T 3opb_A          687 LIAKELLTKKELIENAIQVFADQIDDIE-LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD  760 (778)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHccccHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence            5677788766899999999998  5666 78888888999996    22211222333 4556667777776663

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=9.6e-24  Score=201.50  Aligned_cols=197  Identities=17%  Similarity=0.247  Sum_probs=177.3

Q ss_pred             cHHHHHHhhccCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccH
Q 047123          205 NVGYLISLLDFHHQS--SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENA  281 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~--~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~  281 (579)
                      .+|.|+++|. ++++  .+|..|+.+|.+++..+++++..+++.|+||+|+++|+++++++|+.|+++|.+|+. +++++
T Consensus         9 ~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999 8887  899999999999997688999999999999999999999999999999999999997 68999


Q ss_pred             HHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc----------------CCCHH
Q 047123          282 WAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT----------------SSSNL  344 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~----------------~~~~~  344 (579)
                      ..|.+.|+|+.|+++|. +++..+++.++.+|+||+.++++|..+++. +++.|+.++.                ..++.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 578999999999999999999999999875 6999988652                12669


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc
Q 047123          345 AQENAADCIATLAASGEYFRLLIIQE-RGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS  403 (579)
Q Consensus       345 v~~~a~~~L~~La~~~~~~r~~l~~~-g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~  403 (579)
                      +++++..+|.||+..+++.|..+.+. |+|+.|+.+++..    ..+.+.+++|+.+|+||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999888889999985 6789999999763    23358999999999999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=3e-23  Score=198.04  Aligned_cols=196  Identities=16%  Similarity=0.150  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          162 LFIRDIFTRLQIGGV--EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ..++.++.+|+++++  +.+..|+.+|..++..++.++..+.+.|+||.|+++|+ ++++++|+.|+++|.+|+..++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHH
Confidence            358999999999988  88899999999999999999999999999999999999 999999999999999999867999


Q ss_pred             HHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----------------CCCH
Q 047123          240 RKIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----------------SGTA  302 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----------------~~~~  302 (579)
                      +..+++.|+|++|+++|. +++.++++.++.+|++|+..++++..|.+. ++++|+.++.                ..++
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            999999999999999998 479999999999999999999999999875 7899998652                1266


Q ss_pred             HHHHHHHHHHHHhhc-ChhhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC
Q 047123          303 LTQSHAVGAIRNIAA-VEDIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAAS  359 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~-~~~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~  359 (579)
                      .++++|.++|+||+. ++++|..|.+. |+|+.|+.+++.      .+...++.++.+|+||+..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            899999999999988 66999999975 678999999964      2557999999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=7.3e-22  Score=187.46  Aligned_cols=195  Identities=23%  Similarity=0.305  Sum_probs=184.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ..+.|+.+|++++++++..|+.+|.+++..+++.+..+.+.|+++.|+++|+ ++++.+++.|+++|++++..+++++..
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            5788999999999999999999999999999999999999999999999999 999999999999999999658899999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-ED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~  320 (579)
                      +++.|+++.|+.+|+++++.++..++++|.+|+. +++.+..+.+.|+++.|+.++.++++.++..++++|.|++.. ++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  171 (210)
T 4db6_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (210)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence            9999999999999999999999999999999995 556777888999999999999999999999999999999986 78


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      .+..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus       172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=5.6e-22  Score=188.29  Aligned_cols=198  Identities=21%  Similarity=0.285  Sum_probs=183.4

Q ss_pred             hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCcc
Q 047123          202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPEN  280 (579)
Q Consensus       202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~  280 (579)
                      ..|+.+.|+.+|+ ++++.++..|+++|.+++..+++.+..+++.|+++.|+++|+++++.+++.|+++|.+|+. ++++
T Consensus        10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4678999999999 9999999999999999996588999999999999999999999999999999999999995 6788


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123          281 AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS  359 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~  359 (579)
                      +..+.+.|+++.|+.++.++++.++..++++|.|++. .++.+..+.+.|+++.|++++.++++.++..++++|.+++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999996 566777888999999999999999999999999999999998


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          360 GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       360 ~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      ++..+..+.+.|+++.|++++.+.+.  .+++.|+.+|.+|+.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHhc
Confidence            78889999999999999999997665  899999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=1.9e-20  Score=186.42  Aligned_cols=203  Identities=17%  Similarity=0.191  Sum_probs=179.5

Q ss_pred             HHHHHHHHhccC------------CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHH
Q 047123          163 FIRDIFTRLQIG------------GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLAL  229 (579)
Q Consensus       163 ~v~~Lv~~L~~~------------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL  229 (579)
                      .++..+..|++.            +.+.+..|+..|.+++. +.++...+...|++++|+. +|+ ++++.+|+.|+++|
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            345566666543            34688999999999986 4568888899999999999 999 99999999999999


Q ss_pred             HHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHH
Q 047123          230 SIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSH  307 (579)
Q Consensus       230 ~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  307 (579)
                      ++++.+++.++..+++.|++++|+++|+++ +..+++.|+++|++|+. +++....|.+.|+++.|+.+|++++..++..
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~  186 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK  186 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence            999987889999999999999999999964 88999999999999996 5567788999999999999999999999999


Q ss_pred             HHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 047123          308 AVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLI  367 (579)
Q Consensus       308 a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l  367 (579)
                      ++++|.+++. +++.+..+++.|+++.|+.+|.++++.+++.++.+|.+++...+......
T Consensus       187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~  247 (296)
T 1xqr_A          187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC  247 (296)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence            9999999987 67889999999999999999999999999999999999998765444333

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.82  E-value=1.1e-18  Score=173.64  Aligned_cols=221  Identities=15%  Similarity=0.147  Sum_probs=186.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHH
Q 047123          260 SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQS  337 (579)
Q Consensus       260 ~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~l  337 (579)
                      +.+-+..|...|.+++.+.++...|...|+++.|+. +|.++++.++..|+++|.|++. ++..+..+++.|+++.|+.+
T Consensus        53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            456788999999999999899999999999999999 9999999999999999999998 57788899999999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcC
Q 047123          338 LTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTT  414 (579)
Q Consensus       338 L~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~  414 (579)
                      |.+ .++.++..|+++|.|++.+++.....+.+.|+++.|+.++.+.+.  .++..|+++|.+|+.+  +.+..+++.  
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~--~v~~~A~~aLs~L~~~~~~~~~~vv~~--  208 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLVGHPEHKGTLCSM--  208 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHCGGGHHHHHHT--
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCChHHHHHHHHc--
Confidence            985 478999999999999999887777888899999999999998765  9999999999999987  678889999  


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHH-------HHHHHHHhccCCC-CHhHHHHHHHHHHHhhc
Q 047123          415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVAS-------CMGSLIKLMECPK-PVGLQEAATDAVLSLLT  484 (579)
Q Consensus       415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~-------~v~~Lv~lL~~~~-~~~v~~~a~~aL~~L~~  484 (579)
                      |+++.|+.+|.+.+..+++.|+.+|.+|. ..+.....+..       .++.-++-++..+ ..++.+.+...+.++..
T Consensus       209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999 43444333321       1333344442122 45666777777766654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=3.5e-14  Score=151.12  Aligned_cols=395  Identities=12%  Similarity=0.134  Sum_probs=279.2

Q ss_pred             HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChh-----------------hHHH-HHhhCcHHHHHHhhccCCCHHHH
Q 047123          163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDK-----------------SAAV-VAKEGNVGYLISLLDFHHQSSIR  222 (579)
Q Consensus       163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~-----------------~~~~-i~~~g~v~~Lv~LL~~~~~~~~~  222 (579)
                      .++.|+..|+.+  |.+....+++.|..+...++.                 +... +.+.+.|+.|+.+|+ +.+..+|
T Consensus        61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR  139 (651)
T 3grl_A           61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVR  139 (651)
T ss_dssp             THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHH
T ss_pred             hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHH
Confidence            478888888764  778888889999887654432                 1223 346789999999999 9999999


Q ss_pred             HHHHHHHHHhhccChh-hHHHHHhc-CCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC
Q 047123          223 EQAVLALSIIVSANDE-SRKIVFEE-GGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS  299 (579)
Q Consensus       223 ~~A~~aL~~La~~~~~-~~~~i~~~-g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~  299 (579)
                      ..++++|..|+...++ .++.+... ++++.|+.+|++....+|..+...|.+|+. +++.+..++-.|+++.|+.++..
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence            9999999999986666 77878855 999999999999999999999999999996 55666666778999999999987


Q ss_pred             CCH----HHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC------HHHHHH---HHHHHHHHhcC------
Q 047123          300 GTA----LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS------NLAQEN---AADCIATLAAS------  359 (579)
Q Consensus       300 ~~~----~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~------~~v~~~---a~~~L~~La~~------  359 (579)
                      +..    .+...++.+|.||.. ++.|+..+.|.|+++.|..++..+.      +....+   ++.++..+...      
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~  299 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA  299 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            443    678889999999988 6679999999999999999986442      222233   66677777654      


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhc-------CcHHHHHHHHHhc-CCH
Q 047123          360 GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSST-------TSFIIQLGEFIKR-GNV  429 (579)
Q Consensus       360 ~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~-------~g~i~~L~~lL~~-~~~  429 (579)
                      ...++..+.+.|+++.|++++........++..|..++..+..+  .+...+....       +-.+..|+.++.+ ...
T Consensus       300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~  379 (651)
T 3grl_A          300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF  379 (651)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence            22457788999999999999887654468999999999999987  4444444431       2344445555544 356


Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHHH--------------H-HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123          430 LLQQVSSSLLGNLS-ISDGNKRAVASC--------------M-GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELV  493 (579)
Q Consensus       430 ~v~~~A~~aL~~L~-~~~~~~~~i~~~--------------v-~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~  493 (579)
                      ++|..|+.++.... .|++.+..+...              . ..|..-+ -+.++.--..|+-+|.++...++..+...
T Consensus       380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l-~s~d~~~~wfAavil~hll~~n~~~K~~~  458 (651)
T 3grl_A          380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGL-FSTDSLSNWCAAVALAHALQENATQKEQL  458 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHH-TSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhh-ccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88989999998888 888888777765              1 1233434 33455555778999999998877666543


Q ss_pred             hh-----------cccHHHHHhhcCCCchhhhhHHHHHHHHHHh----CCCChhHHHHHHHcC-chHHHHhhhccCCchH
Q 047123          494 RD-----------EKSVMRLMQMLDPKNEALNKKFPVMVTAAVL----GGGSNGCRKRLVAAG-AYQHLQKLAETEVPGA  557 (579)
Q Consensus       494 ~~-----------~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~----~~~~~~~r~~i~~~g-~~~~L~~L~~~~~~~a  557 (579)
                      ..           ..-++.+...|...+..   +..++.|+-|+    .+..  .-+.+.+.| .++.|+..+..+..+.
T Consensus       459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~---ri~vgyL~LL~~WL~e~p~--AV~dFL~~~s~l~~L~~~i~~~~~~~  533 (651)
T 3grl_A          459 LRVQLATSIGNPPVSLLQQCTNILSQGSKI---QTRVGLLMLLCTWLSNCPI--AVTHFLHNSANVPFLTGQIAENLGEE  533 (651)
T ss_dssp             TTCBCCCCTTCCCCBHHHHHHHHTTTTCCH---HHHHHHHHHHHHHHTTCHH--HHHHHHHSTTHHHHHHHHHHSCCCHH
T ss_pred             HhCcccccCCCCcccHHHHHHHHHhcCCch---hHHHHHHHHHHHHHhCChH--HHHHHHcCCchHHHHHHHHHhccCcc
Confidence            21           12255566666544322   23333333333    3332  545555444 5777776654332233


Q ss_pred             HHHHHHH
Q 047123          558 KKVLQRL  564 (579)
Q Consensus       558 k~~~~~l  564 (579)
                      ..+++.|
T Consensus       534 ~~lvqGL  540 (651)
T 3grl_A          534 EQLVQGL  540 (651)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            4444443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=5.7e-14  Score=149.47  Aligned_cols=321  Identities=17%  Similarity=0.147  Sum_probs=255.6

Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChh-
Q 047123          162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDE-  238 (579)
Q Consensus       162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~-  238 (579)
                      ..|+.|..++++. -.+.|+.|+..|..++++   ++..+. .++++.|+..|+.+ .|.++...++..|.++...+++ 
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            4799999999876 478999999999999764   333333 55699999988723 4688888999999876552322 


Q ss_pred             ----------------hHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-cHHHHHh-cCcHHHHHHHhc
Q 047123          239 ----------------SRKIVF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPE-NAWAISA-YGGVSVLIEAFR  298 (579)
Q Consensus       239 ----------------~~~~i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~-~~~~i~~-~g~i~~Lv~ll~  298 (579)
                                      ..+.++ +.+.++.|+.+|++.+..++..+..+|..|+. .++ ++..|.. .+|++.|+.+|.
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~  176 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA  176 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence                            122333 45789999999999999999999999999995 444 7888885 599999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 047123          299 SGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS----NLAQENAADCIATLAASGEYFRLLIIQERGL  373 (579)
Q Consensus       299 ~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~----~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i  373 (579)
                      +....+|..++..|.+|+. +.+.++.+.-+|+++.|+.++..+.    ..+...++.+|.||...++..+..+.+.|++
T Consensus       177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i  256 (651)
T 3grl_A          177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI  256 (651)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred             CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence            9999999999999999998 5666777778999999999996532    3688999999999999999889999999999


Q ss_pred             HHHHHhhccCCC----ChHHHHH---HHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcC--CHHHHHHHH
Q 047123          374 QRLMHLIQDSTS----SIVTVEN---ALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRG--NVLLQQVSS  436 (579)
Q Consensus       374 ~~Lv~ll~~~~~----~~~~~~~---A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~--~~~v~~~A~  436 (579)
                      +.|..+++....    .+....+   +..+++-|+..        .+...+.+.  |++..|+.++...  ...++..|.
T Consensus       257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~--g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC--GLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT--THHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999875532    1112223   56677777654        345677888  9999999998765  678999999


Q ss_pred             HHHHHhc-CChhhHHHHHHH-----------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123          437 SLLGNLS-ISDGNKRAVASC-----------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN  488 (579)
Q Consensus       437 ~aL~~L~-~~~~~~~~i~~~-----------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~  488 (579)
                      .++..+. .|+.++..|.+.           +..|+.++.......+|.+++.++.+....++.
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence            9999998 888999988863           555666674556789999999999999877654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.64  E-value=4.8e-14  Score=154.36  Aligned_cols=369  Identities=8%  Similarity=0.001  Sum_probs=258.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.+...++++++.+|..|+.+|..++...+..   ......+|.+..+++ +++..+|..++.+|+.++. .-.  ..
T Consensus       204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~-~~~--~~  276 (588)
T 1b3u_A          204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQK-AVG--PE  276 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHH-HHC--HH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHH-HhC--cc
Confidence            4555566666666666666666666665432211   122346777777777 7788888888888888876 211  11


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~  320 (579)
                      ......++.+++++++.++.++..++.+|..++..  ++..........++.+..++++.++.++..++.+|..++..-.
T Consensus       277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  356 (588)
T 1b3u_A          277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred             cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            22345688999999999999999999999998842  2222222335677888899999999999999999988865221


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      ..  ......+|.+..++++.++.++..++.+|..+......   .......++.+..++.+.+.  .++..++.+|..+
T Consensus       357 ~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~--~vr~~~~~~l~~l  429 (588)
T 1b3u_A          357 KD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKW--RVRLAIIEYMPLL  429 (588)
T ss_dssp             HH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHH
T ss_pred             Hh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHH
Confidence            11  12234788899999999999999999999888753211   11224567788888776555  8999999999988


Q ss_pred             ccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHH
Q 047123          401 SLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDA  478 (579)
Q Consensus       401 ~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~a  478 (579)
                      +.. .. . ....  .+++.+..++.+.+..+|..|+.++..++..-+. ..+.+. ++.|.+++ .+.+..+|..++.+
T Consensus       430 ~~~~~~-~-~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~-~~~~~~~R~~a~~~  503 (588)
T 1b3u_A          430 AGQLGV-E-FFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAHATIIPKVLAMS-GDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHHHCG-G-GCCH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHTHHHHHHTT-TCSCHHHHHHHHHH
T ss_pred             HHHcCH-H-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence            764 11 0 1122  4678888889999999999999999999822111 122344 88888888 77789999999999


Q ss_pred             HHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHH
Q 047123          479 VLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       479 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak  558 (579)
                      ++.++.....  ... ....++.|++++++++++ ++..++.++..+...-.    .........+.|.++....+++.+
T Consensus       504 l~~l~~~~~~--~~~-~~~~~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~----~~~~~~~~~p~l~~l~~d~d~~vr  575 (588)
T 1b3u_A          504 INVLSEVCGQ--DIT-TKHMLPTVLRMAGDPVAN-VRFNVAKSLQKIGPILD----NSTLQSEVKPILEKLTQDQDVDVK  575 (588)
T ss_dssp             HHHHHHHHHH--HHH-HHHTHHHHHHGGGCSCHH-HHHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHhcCH--HHH-HHHHHHHHHhhCCCCCch-HHHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHcCCCchhHH
Confidence            9999864221  112 146778899999888777 89999999999986543    223345677888888777777655


Q ss_pred             H
Q 047123          559 K  559 (579)
Q Consensus       559 ~  559 (579)
                      .
T Consensus       576 ~  576 (588)
T 1b3u_A          576 Y  576 (588)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.63  E-value=8.6e-14  Score=152.33  Aligned_cols=369  Identities=11%  Similarity=0.053  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ...++.+...+++.++++|..|+.+|..++...+..   ......+|.|..+++ +++..+|..|+.+|..++...+.  
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~--  236 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQ--  236 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCH--
Confidence            345677778888999999999999999998644321   224678899999999 99999999999999999872221  


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--  318 (579)
                       .......++.+.+++++.+..+|..++.+|..++.....  .......++.++.+++++++.++..++.+|..++..  
T Consensus       237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence             122345788888999988999999999999999842111  122345789999999999999999999999988763  


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      ++.+........+|.+..++.+.+..++..++.+|..++..-..   .......++.+..++.+.++  .++..++.++.
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~--~Vr~~a~~~l~  388 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECP--EVRLNIISNLD  388 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCH--HHHHHHHTTCH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCch--HHHHHHHHHHH
Confidence            23232233445778888999999999999999999988752111   11223467888888876654  89999999988


Q ss_pred             HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHH
Q 047123          399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEAA  475 (579)
Q Consensus       399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a  475 (579)
                      .++..-...... .  .+++.+..++.+.+..++..++.++..++.  .++   .+.+. ++.+.+++ .+++..+|+.|
T Consensus       389 ~l~~~~~~~~~~-~--~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l-~d~~~~Vr~~a  461 (588)
T 1b3u_A          389 CVNEVIGIRQLS-Q--SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWL-VDHVYAIREAA  461 (588)
T ss_dssp             HHHHHSCHHHHH-H--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGG-GCSSHHHHHHH
T ss_pred             HHHHhcCHHHHH-H--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHh-cCCcHHHHHHH
Confidence            887652112222 2  578888899999999999999999999872  222   12223 78888999 67789999999


Q ss_pred             HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc
Q 047123          476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP  555 (579)
Q Consensus       476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~  555 (579)
                      +.+|+.++......  +. -...++.|++++.+.+.. .+..++.++..++..-    .........++.|.++++.+++
T Consensus       462 ~~~l~~l~~~~~~~--~~-~~~llp~l~~~~~~~~~~-~R~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~l~d~~~  533 (588)
T 1b3u_A          462 TSNLKKLVEKFGKE--WA-HATIIPKVLAMSGDPNYL-HRMTTLFCINVLSEVC----GQDITTKHMLPTVLRMAGDPVA  533 (588)
T ss_dssp             HHHHHHHHHHHCHH--HH-HHHTHHHHHHTTTCSCHH-HHHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHHhCch--hH-HHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhhCCCCCc
Confidence            99999998653321  12 145678888887766655 7888888888886532    2222335688889998888877


Q ss_pred             hHH
Q 047123          556 GAK  558 (579)
Q Consensus       556 ~ak  558 (579)
                      ..+
T Consensus       534 ~Vr  536 (588)
T 1b3u_A          534 NVR  536 (588)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            665

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.59  E-value=8.7e-14  Score=159.71  Aligned_cols=374  Identities=11%  Similarity=0.040  Sum_probs=256.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      -..++..|.+.++.+|..++.++..+++.+...    .-.+.++.|++.+. ++++.+++.++.+|..++...+.....-
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence            345667778888999999999999998754211    12568999999999 9999999999999999988322221100


Q ss_pred             H----hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 047123          244 F----EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-  318 (579)
Q Consensus       244 ~----~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-  318 (579)
                      .    -...++.+++.+.+.+..+|..|+++|.++.........-.-...++.|+.++.++++.++..++.+|.+++.. 
T Consensus       167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~  246 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR  246 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence            0    12357788888888899999999999998875432211111135778899999999999999999999999873 


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhc----------cC---
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQ----------DS---  383 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~----------~~---  383 (579)
                      ++.-.... .+.++.++..+.+.++.++..+++++..++... ..+..+..  ...++.++..+.          .+   
T Consensus       247 ~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~e  324 (852)
T 4fdd_A          247 MDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG  324 (852)
T ss_dssp             HHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----
T ss_pred             HHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccc
Confidence            22111111 246778888888889999999999999998643 22322211  234566666651          11   


Q ss_pred             C-------CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH
Q 047123          384 T-------SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC  455 (579)
Q Consensus       384 ~-------~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~  455 (579)
                      +       ....++..|..+|..++.... ..++.   .+++.+..++.+.+..+|..|+.++.+++ ...+....+.+.
T Consensus       325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~  400 (852)
T 4fdd_A          325 GSGGDDTISDWNLRKCSAAALDVLANVYR-DELLP---HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE  400 (852)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHHHG-GGGHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred             ccccccccccchHHHHHHHHHHHHHHhcc-HHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            0       112468889999998887611 12222   47778888888999999999999999999 333322223333


Q ss_pred             -HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc--hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123          456 -MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN--RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG  532 (579)
Q Consensus       456 -v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~  532 (579)
                       ++.+++.+ .+.+..+|..++.+|++++.....  ...+.  ...++.|++.|.+.++. ++..++.++.+++......
T Consensus       401 ~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~-vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          401 LIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKR-VQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             HHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHH-HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHhhHh
Confidence             99999999 777899999999999999864211  11122  35678888888877766 8889999999887432211


Q ss_pred             HHHHHHHcCchHHHHhhhccCC
Q 047123          533 CRKRLVAAGAYQHLQKLAETEV  554 (579)
Q Consensus       533 ~r~~i~~~g~~~~L~~L~~~~~  554 (579)
                      .... . .+.++.|.++++...
T Consensus       477 l~~~-l-~~ll~~L~~~l~~~~  496 (852)
T 4fdd_A          477 LVPY-L-AYILDTLVFAFSKYQ  496 (852)
T ss_dssp             GGGG-H-HHHHHHHHHHHHHCC
T ss_pred             hHhH-H-HHHHHHHHHHHHHhC
Confidence            1111 1 345555666665443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.58  E-value=3.9e-13  Score=133.09  Aligned_cols=253  Identities=13%  Similarity=0.044  Sum_probs=198.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+..|+++++.+|..|+..|..+.  +         .+.++.|+.+|+ ++++.+|..|+.+|+.+.. .+.....
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~-~~~~~~~   90 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKI-CKKCEDN   90 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCC-CTTTHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc-ccccchH
Confidence            4789999999999999999999999885  2         346899999999 9999999999999999986 3322111


Q ss_pred             HHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123          243 VFEEGGLGPLL-RILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       243 i~~~g~l~~Lv-~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~  320 (579)
                           .++.|. .++++.++.++..++++|.++.. ++..     ....++.|+..+.++++.++..++.+|.++..   
T Consensus        91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A           91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND---  157 (280)
T ss_dssp             -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence                 123333 24567899999999999999873 2211     12457899999999999999999999987653   


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                             .++++.|+.++.+.++.++..++++|..+...++         ..++.|+.++.+.+.  .++..|+.+|.++
T Consensus       158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~--~vR~~A~~aL~~~  219 (280)
T 1oyz_A          158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNE--EVRIEAIIGLSYR  219 (280)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCH--HHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCH--HHHHHHHHHHHHh
Confidence                   3589999999999999999999999999864332         357888888877665  8999999999998


Q ss_pred             ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      ...           .+++.|+.++++.+  ++..|+.+|..+....        .++.|.+++++.++.++...+..+|.
T Consensus       220 ~~~-----------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~~--------~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          220 KDK-----------RVLSVLCDELKKNT--VYDDIIEAAGELGDKT--------LLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             TCG-----------GGHHHHHHHHTSSS--CCHHHHHHHHHHCCGG--------GHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             CCH-----------hhHHHHHHHhcCcc--HHHHHHHHHHhcCchh--------hhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            743           78899999998754  8899999999987422        28889998866667777777777664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.57  E-value=3.8e-14  Score=162.72  Aligned_cols=349  Identities=13%  Similarity=0.099  Sum_probs=240.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~  238 (579)
                      .++.|+..++++++..+..|+.+|..++.+.+.....-.    -...++.|+++++ ++++.+|..|+.+|..+....+.
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccH
Confidence            689999999999999999999999999865443321100    1346788888888 89999999999999988762221


Q ss_pred             hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123          239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV  318 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~  318 (579)
                      ..... -...++.+++.+.+++.+++..++++|..++........-.-.+.++.++..+++.++.++..++..+.+++..
T Consensus       208 ~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~  286 (852)
T 4fdd_A          208 ALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ  286 (852)
T ss_dssp             HHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence            11111 12467888899999999999999999999985322111111124778888888999999999999999999876


Q ss_pred             hhhHHHHH--HcCCHHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123          319 EDIKAALA--EEGAVPVLVQSL-----------TS-----------SSNLAQENAADCIATLAASGEYFRLLIIQERGLQ  374 (579)
Q Consensus       319 ~~~~~~l~--~~g~v~~Lv~lL-----------~~-----------~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~  374 (579)
                      ...+..+.  -...+|.++..+           .+           .+-.++..+..+|..++...+.   .+. ...++
T Consensus       287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~  362 (852)
T 4fdd_A          287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP  362 (852)
T ss_dssp             TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence            54443221  113456666666           22           1113688888888888753211   111 23456


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-h-h-hH
Q 047123          375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-D-G-NK  449 (579)
Q Consensus       375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~-~-~~  449 (579)
                      .+..++.+.+.  ..++.|+.+|.+++.+  +.....+.   ++++.++..+++.++.|+..+++++.+++.. . . ..
T Consensus       363 ~l~~~l~~~~~--~~R~aa~~alg~i~~~~~~~~~~~l~---~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          363 LLKELLFHHEW--VVKESGILVLGAIAEGCMQGMIPYLP---ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHTCSSH--HHHHHHHHHHHHTTTTTHHHHGGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHhcCCCH--HHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence            66667766554  8999999999999987  22222333   5889999999999999999999999999821 1 1 22


Q ss_pred             HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      ..+.+.++.|++.+ .+++..+|..|+.+|.+++..... ...+.  ...++.|+++++..+.. ....++.++..++
T Consensus       438 ~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~-~~~~~~~ai~~l~  511 (852)
T 4fdd_A          438 TYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHK-NLLILYDAIGTLA  511 (852)
T ss_dssp             TTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChH-HHHHHHHHHHHHH
Confidence            23333389999999 667899999999999999854222 22222  45667788888765544 3444555565554

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.56  E-value=2.2e-12  Score=127.68  Aligned_cols=254  Identities=14%  Similarity=0.047  Sum_probs=196.5

Q ss_pred             HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123          201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN  280 (579)
Q Consensus       201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~  280 (579)
                      ...+.++.|+.+|+ ++++.+|..|+.+|+.+..           .+.++.|+++|+++++.++..++++|..+...++.
T Consensus        20 ~~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLD-DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35678999999999 9999999999999999875           45689999999999999999999999999854332


Q ss_pred             HHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          281 AWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       281 ~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ...     .++.|.. ++.++++.++..++.+|.++.. .+...     ..+++.|+.++.+.++.++..++.+|.++..
T Consensus        88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111     2344442 4567899999999999999864 22111     2357889999999999999999999987643


Q ss_pred             CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123          359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL  438 (579)
Q Consensus       359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a  438 (579)
                                 .+.++.|+.++.+.+.  .++..|+.+|..+....       .  .+++.|+.++++.++.++..|+.+
T Consensus       158 -----------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~~~-------~--~~~~~L~~~l~d~~~~vR~~A~~a  215 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNG--DVRNWAAFAININKYDN-------S--DIRDCFVEMLQDKNEEVRIEAIIG  215 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSH--HHHHHHHHHHHHHTCCC-------H--HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCH--HHHHHHHHHHHhhccCc-------H--HHHHHHHHHhcCCCHHHHHHHHHH
Confidence                       3478999999987665  89999999999885321       1  578889999999999999999999


Q ss_pred             HHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHH
Q 047123          439 LGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFP  518 (579)
Q Consensus       439 L~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a  518 (579)
                      |.++.....        ++.|+.++ .++  +++..++.+|+.+..           ...++.|.+++...........+
T Consensus       216 L~~~~~~~~--------~~~L~~~l-~d~--~vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          216 LSYRKDKRV--------LSVLCDEL-KKN--TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             HHHTTCGGG--------HHHHHHHH-TSS--SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             HHHhCCHhh--------HHHHHHHh-cCc--cHHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            999973222        88899999 433  389999999998753           35678899998765433234444


Q ss_pred             HH
Q 047123          519 VM  520 (579)
Q Consensus       519 v~  520 (579)
                      +.
T Consensus       274 ~~  275 (280)
T 1oyz_A          274 ID  275 (280)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.45  E-value=6.6e-12  Score=137.82  Aligned_cols=335  Identities=14%  Similarity=0.120  Sum_probs=230.9

Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123          159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE  238 (579)
Q Consensus       159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~  238 (579)
                      -.+..++.+...|.+.++.+|..|+.++..+...+++..   ...++++.|.++|. ++++.++..|+.+|..++..+++
T Consensus       118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCC
Confidence            344567889999999999999999999999988766533   23578999999999 99999999999999999984443


Q ss_pred             hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-
Q 047123          239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-  317 (579)
Q Consensus       239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-  317 (579)
                      ....-...+.+..|+..+.+.++-.+....++|..++..++..    ....++.+..++++.++.++..|+.++..+.. 
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~  269 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLEL  269 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred             ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence            2100011234677888888888889999999888887432211    13456788888888999999999999999864 


Q ss_pred             ---ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          318 ---VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       318 ---~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                         +++....+. ..+.+.|+.++. .++.++..++.+|..+....+..    +.. .+..   ++...+++..++..++
T Consensus       270 ~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~----~~~-~~~~---~~~~~~d~~~Ir~~al  339 (591)
T 2vgl_B          270 LPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI----LKQ-EIKV---FFVKYNDPIYVKLEKL  339 (591)
T ss_dssp             CCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST----TTT-CTTT---TSCCTTSCHHHHHHHH
T ss_pred             cCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH----HHH-HHHh---heeccCChHHHHHHHH
Confidence               333333332 345677777664 78899999999999997644321    110 1111   1111122247888888


Q ss_pred             HHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHH
Q 047123          395 LAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQE  473 (579)
Q Consensus       395 ~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~  473 (579)
                      ..|.+++...+...       .+..|..++.+.+.+++..++.+|.+++ ..+...   ...++.|++++ ......++.
T Consensus       340 ~~L~~l~~~~nv~~-------iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~---~~~v~~Ll~ll-~~~~~~v~~  408 (591)
T 2vgl_B          340 DIMIRLASQANIAQ-------VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA---ERCVSTLLDLI-QTKVNYVVQ  408 (591)
T ss_dssp             HHHHHTCCSSTHHH-------HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHH-HTCCHHHHH
T ss_pred             HHHHHHCChhhHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH---HHHHHHHHHHH-cccchHHHH
Confidence            88888887655432       4555677778888888888888888888 443221   11277888888 555667777


Q ss_pred             HHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      .+..++.++....++.+     +.++..|.+.+++......+..+++++...+.
T Consensus       409 e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          409 EAIVVIRDIFRKYPNKY-----ESIIATLCENLDSLDEPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             HHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHCcchH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence            77778888775443321     45667777777644333256666777766654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.42  E-value=1.5e-11  Score=116.23  Aligned_cols=188  Identities=20%  Similarity=0.248  Sum_probs=158.7

Q ss_pred             hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 047123          202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA  281 (579)
Q Consensus       202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~  281 (579)
                      ..+.++.|+++|+ ++++.+|..|+.+|+.+..           ...++.|++.|.++++.++..++++|..+..     
T Consensus        17 ~~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred             CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            3567999999999 9999999999999998876           4679999999999999999999999998863     


Q ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123          282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE  361 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~  361 (579)
                           .+.++.|+.++.++++.++..++.+|.++..          ...++.|+.++.+.++.++..++.+|.++..   
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                 3578999999999999999999999988753          2478899999999999999999999998843   


Q ss_pred             hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047123          362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGN  441 (579)
Q Consensus       362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~  441 (579)
                              ...++.|..++.+.+.  .++..|+.+|..+...           .+++.|..++++.++.++..|..+|.+
T Consensus       142 --------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDEDG--WVRQSAADALGEIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCch-----------hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                    3468888888876654  8999999999988653           678888899999999999999999999


Q ss_pred             hcCC
Q 047123          442 LSIS  445 (579)
Q Consensus       442 L~~~  445 (579)
                      +..+
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9843

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.38  E-value=3.3e-11  Score=112.87  Aligned_cols=185  Identities=21%  Similarity=0.259  Sum_probs=161.2

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW  282 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~  282 (579)
                      .+..+.++++|+ ++++.+|..|+.+|..+..           .+.++.|++.|+++++.++..++.+|..+..      
T Consensus        13 ~~~~~~~i~~L~-~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CcchHHHHHHhc-CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            456889999999 9999999999999998876           4679999999999999999999999998853      


Q ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123          283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY  362 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~  362 (579)
                          ...++.|+.++.+.++.++..++.+|.++..          ..+++.|+.++.+.++.++..++.+|.++..    
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence                3578999999999999999999999998753          2478889999999999999999999998853    


Q ss_pred             hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123          363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL  442 (579)
Q Consensus       363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L  442 (579)
                             ...++.|..++.+.+.  .++..|+.+|..+...           .+++.|..++++.++.++..|..+|.++
T Consensus       137 -------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDG--WVRQSAADALGEIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCch-----------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                   3568889999987654  8999999999998543           6788899999999999999999999987


Q ss_pred             c
Q 047123          443 S  443 (579)
Q Consensus       443 ~  443 (579)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            5

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.36  E-value=5e-11  Score=112.54  Aligned_cols=185  Identities=22%  Similarity=0.235  Sum_probs=158.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+..|+++++.+|..|+..|..+..           .+.++.|+++|+ ++++.+|..|+.+|+.+..        
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--------
Confidence            58999999999999999999999988742           357999999999 9999999999999999876        


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                         .+.++.|++.|++.++.++..++++|.++..          ...++.|+.++.++++.++..++.+|.++..     
T Consensus        80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence               4678999999999999999999999999864          3478999999999999999999999998743     


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                           ...++.|..++.+.++.++..++.+|..+..           ...++.|..++.+.++  .++..|..+|.++..
T Consensus       142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLETHKS  203 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH--HHHHHHHHHHHC---
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH--HHHHHHHHHHHhcCC
Confidence                 2478899999999999999999999999843           3357788888887765  899999999999876


Q ss_pred             c
Q 047123          403 S  403 (579)
Q Consensus       403 ~  403 (579)
                      .
T Consensus       204 ~  204 (211)
T 3ltm_A          204 F  204 (211)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.36  E-value=3.2e-11  Score=132.32  Aligned_cols=294  Identities=11%  Similarity=0.110  Sum_probs=218.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+.++-+.|++++.+.+..++..+..+..-+.+.      ..+.+.+++++. +++..++..+..++..++..+++..  
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~--   84 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA--   84 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH--
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH--
Confidence            4778888999999999999988887765433211      335677888998 9999999999888888877333322  


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chhh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~  321 (579)
                         .-++..+.+-|.++++.++..|.++|+++. .++....     .++.+..++.+.++.++..|+.++.++.. +++.
T Consensus        85 ---~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~  155 (591)
T 2vgl_B           85 ---IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM  155 (591)
T ss_dssp             ---HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ---HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence               234678888888999999999999999986 3333333     35778899999999999999999999976 3332


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                         +.+.+.++.+..+|.+.++.++..|+.+|..++..++..+......+.+..|+..+...++  ..+...++++..++
T Consensus       156 ---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~--~~q~~il~~l~~l~  230 (591)
T 2vgl_B          156 ---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE--WGQIFILDCLSNYN  230 (591)
T ss_dssp             ---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHTSC
T ss_pred             ---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc--hHHHHHHHHHHHhC
Confidence               2234678999999999999999999999999998664310000112345667776665554  78888888888887


Q ss_pred             cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHH
Q 047123          402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI----SDGNKRAVASC-MGSLIKLMECPKPVGLQEAAT  476 (579)
Q Consensus       402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~----~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~  476 (579)
                      ..+...   ..  .+++.+..++++.++.|+..|+.++..+..    +++..+.+.+. .+.|+.++ . .+..+|..++
T Consensus       231 ~~~~~~---~~--~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~-~d~~vr~~aL  303 (591)
T 2vgl_B          231 PKDDRE---AQ--SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S-GEPEVQYVAL  303 (591)
T ss_dssp             CCSHHH---HH--HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T-SCHHHHHHHH
T ss_pred             CCChHH---HH--HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c-CCccHHHHHH
Confidence            552211   12  467778888889999999999999999872    45655555555 78888777 4 5789999999


Q ss_pred             HHHHHhhcCC
Q 047123          477 DAVLSLLTVR  486 (579)
Q Consensus       477 ~aL~~L~~~~  486 (579)
                      .+|..+....
T Consensus       304 ~~l~~i~~~~  313 (591)
T 2vgl_B          304 RNINLIVQKR  313 (591)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.35  E-value=9.1e-11  Score=109.83  Aligned_cols=183  Identities=22%  Similarity=0.246  Sum_probs=159.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ..+.++..|+++++.+|..|+..|..+..           .+.++.|+++|+ ++++.+|..|+.+|+.+..        
T Consensus        15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--------
T ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--------
Confidence            57889999999999999999999988752           356999999999 9999999999999999876        


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                         ...++.|+..|.+.++.++..++++|.++..          ...++.|+.++.+.++.++..++.+|.++..     
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence               4678999999999999999999999999864          3478999999999999999999999998753     


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                           ...++.|+.++.+.++.++..++.+|..+..           ...++.|..++.+.+.  .++..|..+|..+.
T Consensus       137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLETHK  197 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH--HHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH--HHHHHHHHHHHHHH
Confidence                 3578899999999999999999999999832           2357888888877665  89999999998875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.29  E-value=1.1e-09  Score=120.69  Aligned_cols=291  Identities=13%  Similarity=0.093  Sum_probs=186.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .....+..+++.+.+.|.-.--.+..++..+++....     .++.|.+-|+ ++++.+|..|+++|+++.. . +    
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~-~~n~~vr~lAL~~L~~i~~-~-~----  138 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLN-HSTQFVQGLALCTLGCMGS-S-E----  138 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHS-CSSSHHHHHHHHHHHHHCC-H-H----
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcC-CCCHhHHHHHHHHHHhcCC-H-H----
Confidence            4566778888999999988888888888776553222     3778888888 9999999999999999985 2 2    


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh-
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~-  320 (579)
                      +. ...++.+.+.|.+.++.+|..|+.++.++.. +++..     .+.++.+..++.+.++.++..|+.+|..++.... 
T Consensus       139 ~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          139 MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence            21 3558889999999999999999999999984 44432     2566778888889999999999999999987532 


Q ss_pred             hHHHHHHcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHh----------------
Q 047123          321 IKAALAEEGAVPVLVQSLTS---------------SSNLAQENAADCIATLAASGEYFRLLIIQ----------------  369 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~---------------~~~~v~~~a~~~L~~La~~~~~~r~~l~~----------------  369 (579)
                      ....+  ...+|.++.+|.+               .++-.+...+.+|..++..++.....+.+                
T Consensus       213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence            22222  2577877776642               36778888888888888765442211000                


Q ss_pred             ---------------------cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC
Q 047123          370 ---------------------ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN  428 (579)
Q Consensus       370 ---------------------~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~  428 (579)
                                           ..+++.|..++.+.++  .++..|+.+|..++...  ..++.   .....++..+.+.+
T Consensus       291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~--~vr~~aL~~L~~i~~~~--p~~~~---~~~~~i~~~l~d~d  363 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDK--NIRYVALTSLLKTVQTD--HNAVQ---RHRSTIVDCLKDLD  363 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSST--TTHHHHHHHHHHHHHHH--HHHHG---GGHHHHHHGGGSSC
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHhhC--HHHHH---HHHHHHHHHccCCC
Confidence                                 0123334444443332  44555555554444320  01111   23344555556666


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          429 VLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       429 ~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ..++..|..+|..++....... +   ++.|...+ .+.+.+++..++.+++.++..
T Consensus       364 ~~Ir~~alelL~~l~~~~nv~~-i---v~eL~~~l-~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          364 VSIKRRAMELSFALVNGNNIRG-M---MKELLYFL-DSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHHHHHCCSSSTHH-H---HHHHHHHH-HHCCHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHcccccHHH-H---HHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence            6666666666666653222111 1   34444444 334566666666666666654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.26  E-value=1.7e-10  Score=122.06  Aligned_cols=347  Identities=11%  Similarity=0.064  Sum_probs=233.3

Q ss_pred             HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHH--------HH---HhhCcHHHHHHhhccCCCHHHHHHHHHHH
Q 047123          163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAA--------VV---AKEGNVGYLISLLDFHHQSSIREQAVLAL  229 (579)
Q Consensus       163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~--------~i---~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL  229 (579)
                      ++..|+..+.++  ++.+|..|+..|.++.........        .+   .....-..|+..|. ++++.+ ..++.+|
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHH
Confidence            455666777664  688999999999998754321110        00   12234455777787 777777 8889999


Q ss_pred             HHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCC--CHH
Q 047123          230 SIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSG--TAL  303 (579)
Q Consensus       230 ~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~--~~~  303 (579)
                      ..++. ...-..  .-.+.++.|+..+.++  ++.+++.++.+|..++..  ++.-... -...++.++..+.+.  ++.
T Consensus       114 ~~ia~-~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIAC-AEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHH-HHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHH-Hhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHH
Confidence            99987 321110  1146789999999998  899999999999999842  2211111 123678888888887  789


Q ss_pred             HHHHHHHHHHHhhcC-hhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhh
Q 047123          304 TQSHAVGAIRNIAAV-EDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQERGLQRLMHLI  380 (579)
Q Consensus       304 ~~~~a~~aL~nLs~~-~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g~i~~Lv~ll  380 (579)
                      ++..++.++.++... .++- ......-.++.+...+.+.++.++..++.+|..++...+.. ... ...+.++.++..+
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~  268 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            999999999987542 1111 00111114666667778888999999999999998643321 111 1115667777777


Q ss_pred             ccCCCChHHHHHHHHHHHHcccch-h----------------------HHHHHhhcCcHHHHHHHHHhcC-------CHH
Q 047123          381 QDSTSSIVTVENALLAISSLSLSD-S----------------------AARILSSTTSFIIQLGEFIKRG-------NVL  430 (579)
Q Consensus       381 ~~~~~~~~~~~~A~~aL~~L~~~~-~----------------------~~~l~~~~~g~i~~L~~lL~~~-------~~~  430 (579)
                      .+.++  .++..++..+..++... .                      ....+.   ..++.++..+...       +..
T Consensus       269 ~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~p~l~~~l~~~d~d~~~~~~~  343 (462)
T 1ibr_B          269 KSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ---YLVPILTQTLTKQDENDDDDDWN  343 (462)
T ss_dssp             HCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH---HHHHHHHHHTTCCCSSCCTTCCS
T ss_pred             cCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh---hccHHHHHHHHhcccccccccch
Confidence            66554  89999999988887642 1                      111111   3566666666432       347


Q ss_pred             HHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc-c-hhHHHhhcccHHHHHhhc
Q 047123          431 LQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS-N-RKELVRDEKSVMRLMQML  506 (579)
Q Consensus       431 v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~-~-~~~~~~~~~~i~~Lv~lL  506 (579)
                      ++..|..+|..++ ..++   .+... ++.+...+ .+.+..+|+.|+.+|+.++.... . ....+  ...++.++++|
T Consensus       344 ~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l  417 (462)
T 1ibr_B          344 PCKAAGVCLMLLATCCED---DIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM  417 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHh
Confidence            8999999999998 2221   33334 77888888 67789999999999999996432 1 12222  45788899999


Q ss_pred             CCCchhhhhHHHHHHHHHHhCC
Q 047123          507 DPKNEALNKKFPVMVTAAVLGG  528 (579)
Q Consensus       507 ~~~~~~~~k~~av~~L~~L~~~  528 (579)
                      .++++. ++..++.+|..++..
T Consensus       418 ~d~~~~-Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          418 KDPSVV-VRDTAAWTVGRICEL  438 (462)
T ss_dssp             GCSCHH-HHHHHHHHHHHHHHH
T ss_pred             cCCCHH-HHHHHHHHHHHHHHh
Confidence            888777 899999999988754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.25  E-value=5.1e-09  Score=115.36  Aligned_cols=331  Identities=9%  Similarity=0.071  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      +...+.++-+.+++++...|..++..|..+..-+...      ..+....++++. +++...+.-..-++..++..+++.
T Consensus        32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~  104 (618)
T 1w63_A           32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQDV  104 (618)
T ss_dssp             HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCcHH
Confidence            4445667777888888778888888777764332211      235666778888 999998888888888888734332


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V  318 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~  318 (579)
                      ..     -++..|.+-|.++++.++..|.++|+++.. ++.    . ...++.+..++.+.++.++..|+.++.++.. +
T Consensus       105 ~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          105 HL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             HH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred             HH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence            22     237788899999999999999999999984 222    1 3456888899999999999999999999976 4


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-------------CCC
Q 047123          319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-------------STS  385 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-------------~~~  385 (579)
                      ++..     .+.++.+..++.+.++.++..|+.+|..++..++.....+  ...++.++++|..             +..
T Consensus       174 p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~  246 (618)
T 1w63_A          174 PELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS  246 (618)
T ss_dssp             GGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred             hHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence            4422     2577788888999999999999999999997654422222  3567777776653             122


Q ss_pred             ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh------cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 047123          386 SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK------RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSL  459 (579)
Q Consensus       386 ~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~------~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~L  459 (579)
                      ++..+...+++|..++..+...   ..  .+...|..++.      +.+..+...|+.++..+..+++.+.   .+++.|
T Consensus       247 ~~~~q~~il~~L~~l~~~~~~~---~~--~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~---~a~~~L  318 (618)
T 1w63_A          247 DPFLQVRILRLLRILGRNDDDS---SE--AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV---LAINIL  318 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHH---HH--TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH---HHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCCHHH---HH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH---HHHHHH
Confidence            4578888999999988762110   11  34444555543      2345788889999988875544332   237788


Q ss_pred             HHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          460 IKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       460 v~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      .+++ .++++.+|..|..+|..++...+   ..+  ......++.++.+++.. +|..++.++..++...+
T Consensus       319 ~~~L-~~~d~~vr~~aL~~L~~i~~~~p---~~~--~~~~~~i~~~l~d~d~~-Ir~~alelL~~l~~~~n  382 (618)
T 1w63_A          319 GRFL-LNNDKNIRYVALTSLLKTVQTDH---NAV--QRHRSTIVDCLKDLDVS-IKRRAMELSFALVNGNN  382 (618)
T ss_dssp             HHHH-TCSSTTTHHHHHHHHHHHHHHHH---HHH--GGGHHHHHHGGGSSCHH-HHHHHHHHHHHHCCSSS
T ss_pred             HHHH-hCCCCchHHHHHHHHHHHHhhCH---HHH--HHHHHHHHHHccCCChh-HHHHHHHHHHHHccccc
Confidence            8888 66678999999999999886432   233  23456788888877666 88889998888887654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.24  E-value=1.1e-09  Score=125.40  Aligned_cols=375  Identities=14%  Similarity=0.079  Sum_probs=245.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh---
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES---  239 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~---  239 (579)
                      .++.+...+++++++.|..++.+|..++...+...........++.+...+. +.+..++..|+.++..++. ....   
T Consensus       225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~-~~~~~~~  302 (861)
T 2bpt_A          225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK-SPNDKVASMTVEFWSTICE-EEIDIAY  302 (861)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHH-HHHhhhh
Confidence            5666777788899999999999999998755543332223367778888888 8899999999999999887 3211   


Q ss_pred             ---------------HHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh
Q 047123          240 ---------------RKIVFEEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF  297 (579)
Q Consensus       240 ---------------~~~i~~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll  297 (579)
                                     ....+ ...++.++..|...       +..++..+..+|..++..-..  .+ -...++.+...+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l  378 (861)
T 2bpt_A          303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNI  378 (861)
T ss_dssp             HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHT
T ss_pred             hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHc
Confidence                           11111 34677888887642       357889999999998842110  01 123456666777


Q ss_pred             cCCCHHHHHHHHHHHHHhhcChh--hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHH
Q 047123          298 RSGTALTQSHAVGAIRNIAAVED--IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQERGLQ  374 (579)
Q Consensus       298 ~~~~~~~~~~a~~aL~nLs~~~~--~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g~i~  374 (579)
                      .+.+...++.++.++.+++....  .-.... ...++.++..+.+.++.++..+++++..++..-... ...-.-...++
T Consensus       379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~  457 (861)
T 2bpt_A          379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ  457 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence            78889999999999999986432  111122 247888889999999999999999999987531100 00000134567


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHcccc-h-----hHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhc--C
Q 047123          375 RLMHLIQDSTSSIVTVENALLAISSLSLS-D-----SAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLS--I  444 (579)
Q Consensus       375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~-----~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~--~  444 (579)
                      .++..+.+.   +.++..|+.+|.+++.. .     .....+.   ..++.|+..+.+.+  ..++..+..++..+.  .
T Consensus       458 ~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~---~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          458 ACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYP---ALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH---HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHH---HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            777777654   48999999999998764 2     1112222   46777888887543  789999999999998  4


Q ss_pred             ChhhHHHHHHHHHHHHHhccC--------------CCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCC
Q 047123          445 SDGNKRAVASCMGSLIKLMEC--------------PKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPK  509 (579)
Q Consensus       445 ~~~~~~~i~~~v~~Lv~lL~~--------------~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~  509 (579)
                      .++....+.+-++.+++.+..              .....++..++.+|.+++..... ...+.  ...++.+++++...
T Consensus       532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~  609 (861)
T 2bpt_A          532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKK  609 (861)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHST
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccC
Confidence            444444444436666665521              11345788899999999865332 11222  34566777888776


Q ss_pred             ch-hhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc
Q 047123          510 NE-ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP  555 (579)
Q Consensus       510 ~~-~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~  555 (579)
                      +. . .++.++.++..++.....+....+  ...++.|.+.+..+++
T Consensus       610 ~~~~-v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~  653 (861)
T 2bpt_A          610 DSAF-IEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDS  653 (861)
T ss_dssp             TGGG-THHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTS
T ss_pred             CCCc-HHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccH
Confidence            54 4 677777777777643321133322  2266777777655544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.23  E-value=3.3e-10  Score=119.83  Aligned_cols=370  Identities=14%  Similarity=0.046  Sum_probs=245.6

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhhHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      +..++..+.+.+.+.|..|-..|..+...+        ..+++..|+.++. ++  ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhccccchHHH
Confidence            456677777889999999999998765321        2456778888887 54  689999999999998652211000


Q ss_pred             --------HH---HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCC--CHHHHH
Q 047123          242 --------IV---FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSG--TALTQS  306 (579)
Q Consensus       242 --------~i---~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~  306 (579)
                              .+   ....+-..++..|.+.+..+ ..++.++..++..  ++..    -.+.++.|+..+.++  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~----w~~ll~~L~~~l~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc----cHHHHHHHHHHhccCCCCHHHHH
Confidence                    00   11223445777788877777 8889999998843  2111    256889999999988  899999


Q ss_pred             HHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHhhc
Q 047123          307 HAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGEYFR-LLIIQERGLQRLMHLIQ  381 (579)
Q Consensus       307 ~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~~~r-~~l~~~g~i~~Lv~ll~  381 (579)
                      .++.+|..++..  ++.-.... ...++.++.++.+.  ++.++..++.++.++...-...- ......-.++.+...+.
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            999999998752  22111111 13677888888877  78999999999999764321100 00011113555555555


Q ss_pred             cCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh-------------
Q 047123          382 DSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD-------------  446 (579)
Q Consensus       382 ~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~-------------  446 (579)
                      +.+  ..++..++.+|..++..  +.....+..  ++++.++..+++.++.++..+...+..++...             
T Consensus       228 ~~~--~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~  303 (462)
T 1ibr_B          228 CPD--TRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ  303 (462)
T ss_dssp             CSS--HHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred             CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            444  48999999999998865  222222332  57777788888899999999999988887321             


Q ss_pred             ------hhHHHH---HHH-HHHHHHhccC------CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCc
Q 047123          447 ------GNKRAV---ASC-MGSLIKLMEC------PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKN  510 (579)
Q Consensus       447 ------~~~~~i---~~~-v~~Lv~lL~~------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  510 (579)
                            .....+   ... ++.+++.+.+      +++..+|..|+.+|..++.....  .+.  ...++.+.+.+.+.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--~~~~~~l~~~l~~~~  379 (462)
T 1ibr_B          304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV--PHVLPFIKEHIKNPD  379 (462)
T ss_dssp             SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH--HHHHHHHHHHTTCSS
T ss_pred             CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH--HHHHHHHHHHhcCCC
Confidence                  001111   122 7888887732      23457899999999999875441  222  345677778888776


Q ss_pred             hhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHH
Q 047123          511 EALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       511 ~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak  558 (579)
                      .. .|..++.++..++.+...+.-+..+ ..+++.|.+++.++++..+
T Consensus       380 ~~-~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr  425 (462)
T 1ibr_B          380 WR-YRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR  425 (462)
T ss_dssp             HH-HHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHH
T ss_pred             hH-HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHH
Confidence            66 8899999999998644311111111 5688999999988777554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.20  E-value=2.4e-09  Score=122.72  Aligned_cols=348  Identities=11%  Similarity=0.042  Sum_probs=233.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccC-hhhHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSAN-DESRK  241 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~-~~~~~  241 (579)
                      ..++..|.+.++.. ..++.++..++.......   .-...++.|+..+. ++  ++.+++.++.++..++... ++.-.
T Consensus        93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~---~w~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~  167 (876)
T 1qgr_A           93 NYVLHTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHH
Confidence            44667777776666 777888887765321000   02567899999998 88  8999999999999998722 11100


Q ss_pred             HHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-Ccc-HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          242 IVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTD-PEN-AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      . .-...++.+.+.+.++  +..++..++.++.++... ..+ .........++.+...+.+.+..++..++.+|..+..
T Consensus       168 ~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~  246 (876)
T 1qgr_A          168 D-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             G-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            0 0124567788888776  689999999999998742 111 0000111256777778888889999999999998876


Q ss_pred             -ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH------------------HHH--HhcCcHHHH
Q 047123          318 -VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR------------------LLI--IQERGLQRL  376 (579)
Q Consensus       318 -~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r------------------~~l--~~~g~i~~L  376 (579)
                       .+..-........++.++..+.+.++.++..++.++..++.......                  ..+  .-...++.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  326 (876)
T 1qgr_A          247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence             33221222233678888888888889999999999998875311000                  000  002345666


Q ss_pred             HHhhccC-----CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-h
Q 047123          377 MHLIQDS-----TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-N  448 (579)
Q Consensus       377 v~ll~~~-----~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~  448 (579)
                      ++.+...     +.+..++..|..+|..++..-. ..++.   .+++.+...+.+.+..+|..|+.++..++.  .++ .
T Consensus       327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~  402 (876)
T 1qgr_A          327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL  402 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred             HHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHH---HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH
Confidence            6766432     1223688899999998887611 12222   466777778888899999999999999993  323 3


Q ss_pred             HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123          449 KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV  525 (579)
Q Consensus       449 ~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L  525 (579)
                      ...+.+.++.+++.+ .+.+..+|..|+.+|++++......   ....  ...++.|++.|.+. +. ++..++.++..+
T Consensus       403 ~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~-v~~~a~~al~~l  477 (876)
T 1qgr_A          403 KPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PR-VASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HH-HHHHHHHHHHHH
Confidence            333333399999999 7778999999999999998753321   1222  35667888888764 44 677888888777


Q ss_pred             hC
Q 047123          526 LG  527 (579)
Q Consensus       526 ~~  527 (579)
                      +.
T Consensus       478 ~~  479 (876)
T 1qgr_A          478 AE  479 (876)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.18  E-value=2.9e-09  Score=121.83  Aligned_cols=333  Identities=12%  Similarity=0.129  Sum_probs=223.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh-
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES-  239 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~-  239 (579)
                      ..++.+...+++.++..|..|+.++..++.... +...... ...++.|+..++ ++++.+|..++.+|+.++...... 
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~  446 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESI  446 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhhhhc
Confidence            345566677788899999999999999986542 3222222 357889999998 899999999999999998721110 


Q ss_pred             -HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHH--hcCcHHHHHHHhcCCC--HHHHHHHHHHH
Q 047123          240 -RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE--NAWAIS--AYGGVSVLIEAFRSGT--ALTQSHAVGAI  312 (579)
Q Consensus       240 -~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~~~~i~--~~g~i~~Lv~ll~~~~--~~~~~~a~~aL  312 (579)
                       ... .-...++.++..+++. +.++..++++|.+++..-.  ....+.  -...++.|+..+.+.+  +.++..++.++
T Consensus       447 ~~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          447 DPQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             CTTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence             000 1124578888888775 8999999999999874210  000111  1345788888887543  68899999999


Q ss_pred             HHhhcC--hhhHHHHHHcCCHHHHHHHhcCC---------------CHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHH
Q 047123          313 RNIAAV--EDIKAALAEEGAVPVLVQSLTSS---------------SNLAQENAADCIATLAASGEY-FRLLIIQERGLQ  374 (579)
Q Consensus       313 ~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~---------------~~~v~~~a~~~L~~La~~~~~-~r~~l~~~g~i~  374 (579)
                      ..+...  ++....+.  ..++.++..+...               ...++..++.+|.+++..-+. ....  -...++
T Consensus       525 ~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~  600 (861)
T 2bpt_A          525 TTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMG  600 (861)
T ss_dssp             HHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHHHHH
T ss_pred             HHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHH
Confidence            988762  22222222  3566666666421               345778899999988753322 1110  124567


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHH
Q 047123          375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKR  450 (579)
Q Consensus       375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~  450 (579)
                      .++..+..... +.+++.++.++..++..  ......+.   .+++.+...++..++.++..+..++..++  ..+....
T Consensus       601 ~l~~~l~~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~l~---~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~  676 (861)
T 2bpt_A          601 LFFRLLEKKDS-AFIEDDVFYAISALAASLGKGFEKYLE---TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRR  676 (861)
T ss_dssp             HHHHHHHSTTG-GGTHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHH
T ss_pred             HHHHHHccCCC-CcHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccc
Confidence            77777776542 16889999999988876  33344444   38888999998888899999999999998  3344444


Q ss_pred             HHHHHHHHHHHhccCC-CCHhHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCC
Q 047123          451 AVASCMGSLIKLMECP-KPVGLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDP  508 (579)
Q Consensus       451 ~i~~~v~~Lv~lL~~~-~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~  508 (579)
                      .+..-++.+++.+++. .+.+++..+..+++.++... +....++  ...++.+++.+..
T Consensus       677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~  734 (861)
T 2bpt_A          677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNT  734 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhc
Confidence            4433388888888443 24789999999999998643 2333333  3456777777764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.18  E-value=4.9e-09  Score=120.14  Aligned_cols=350  Identities=15%  Similarity=0.090  Sum_probs=234.0

Q ss_pred             HHHHHHHHhccC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccCh
Q 047123          163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~  237 (579)
                      .++.++..+.++  ++..|..++.+|..++..- ++.. .-.....++.+.+.+. ++  +..+|..|+.++..+....+
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~-~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMR-KEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHS-TTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            688899999998  9999999999999998642 2210 0012445777888887 66  68999999999998875222


Q ss_pred             hhH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          238 ESR-KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       238 ~~~-~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      ..- ........++.+...+.+.+.+++..++.+|..+.. .++.-........++.++..+.+.++.++..++..+.++
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            111 111112256777777778889999999999999984 333222223346788888888888889999999988888


Q ss_pred             hcChhh-----HH--------------HH--HHcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHH
Q 047123          316 AAVEDI-----KA--------------AL--AEEGAVPVLVQSLTS-------SSNLAQENAADCIATLAASGEYFRLLI  367 (579)
Q Consensus       316 s~~~~~-----~~--------------~l--~~~g~v~~Lv~lL~~-------~~~~v~~~a~~~L~~La~~~~~~r~~l  367 (579)
                      +.....     ..              ..  .-...++.++..+..       .+..++..+..+|..++...+.   .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hh
Confidence            653210     00              00  002346667777742       2346888899999888753211   11


Q ss_pred             HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-
Q 047123          368 IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-  443 (579)
Q Consensus       368 ~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-  443 (579)
                      . ...++.+...+.+.+.  .+++.|+.++..++.. .  .....+.   .+++.++..+.+.++.++..|++++.+++ 
T Consensus       364 ~-~~~l~~l~~~l~~~~~--~~r~~a~~~l~~i~~~~~~~~~~~~~~---~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVI---QAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSH--HHHHHHHHHHHHTSSSSCHHHHHHHHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHccCCCh--HHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            1 2345555566665544  8999999999999986 2  2333443   58899999999999999999999999999 


Q ss_pred             CChh---hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc---------------chhHHHhhcccHHHHHhh
Q 047123          444 ISDG---NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRS---------------NRKELVRDEKSVMRLMQM  505 (579)
Q Consensus       444 ~~~~---~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~---------------~~~~~~~~~~~i~~Lv~l  505 (579)
                      ..+.   ....+...++.|++.+ .+ +..++..++.+|.+++....               .....+  ...++.|++.
T Consensus       438 ~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~  513 (876)
T 1qgr_A          438 LLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLET  513 (876)
T ss_dssp             HCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHH
T ss_pred             hCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHH
Confidence            3222   2233434488999999 44 38899999999999985421               111222  3466778888


Q ss_pred             cCCCc--hhhhhHHHHHHHHHHhC
Q 047123          506 LDPKN--EALNKKFPVMVTAAVLG  527 (579)
Q Consensus       506 L~~~~--~~~~k~~av~~L~~L~~  527 (579)
                      +...+  ....+..++.++..++.
T Consensus       514 l~~~~~~~~~~r~~~~~~l~~l~~  537 (876)
T 1qgr_A          514 TDRPDGHQNNLRSSAYESLMEIVK  537 (876)
T ss_dssp             TTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred             HhCcCcchhhHHHHHHHHHHHHHH
Confidence            87543  12255566666666654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.14  E-value=8.7e-10  Score=131.43  Aligned_cols=347  Identities=15%  Similarity=0.165  Sum_probs=237.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+..++..+.+.|.+.|..|...|.+....+......-.....++.|++.|. +.++.+|..|+.+|+.++...++  ..
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQ   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence            5788999999999999999999998876433110000012245788889998 99999999999999999873332  11


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCcc----HHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPEN----AWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNI  315 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~----~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nL  315 (579)
                      +  ...++.++..+.+++..+|..++.+|..++.  .++.    ...-.....++.|+..+. ++++.++..++.++..+
T Consensus        84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            1  2357788888888888899999999999883  2210    011122457899999998 57889999999999988


Q ss_pred             hcC--hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123          316 AAV--EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       316 s~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      +..  +.....+  ...++.++..+.+.++.++..++.+|..++...+.   .+ -...++.++..+..... ...+..+
T Consensus       162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~-~~~r~~a  234 (1230)
T 1u6g_C          162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDS-MSTTRTY  234 (1230)
T ss_dssp             HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCS-SCSCTTH
T ss_pred             HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCc-hhHHHHH
Confidence            741  1111111  23566777778888899999999999999875432   11 23457888887766542 2567778


Q ss_pred             HHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCC----
Q 047123          394 LLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECP----  466 (579)
Q Consensus       394 ~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~----  466 (579)
                      +.++..++.. ..  .+...-...++.++..+.+.+++++..+..++..++  ...+.+.++.+-++.+++.+..+    
T Consensus       235 ~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          235 IQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence            8888888765 21  111112268889999999889999999999999998  33344444444477777766210    


Q ss_pred             --------------------------------CCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhh
Q 047123          467 --------------------------------KPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEAL  513 (579)
Q Consensus       467 --------------------------------~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~  513 (579)
                                                      ....+|..|+.+|..++...+. ...++  ...++.+++.+.+++++ 
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~-  389 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREEN-  389 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSH-
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchH-
Confidence                                            0134688999999999875442 23333  45677888888777666 


Q ss_pred             hhHHHHHHHHHHh
Q 047123          514 NKKFPVMVTAAVL  526 (579)
Q Consensus       514 ~k~~av~~L~~L~  526 (579)
                      ++..++.++..+.
T Consensus       390 Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          390 VKADVFHAYLSLL  402 (1230)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777666554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=7.5e-10  Score=123.29  Aligned_cols=191  Identities=16%  Similarity=0.144  Sum_probs=153.9

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhcC--CCccHH
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSMPLKEKAAIGVEAITT--DPENAW  282 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~  282 (579)
                      |.++++.|+ ++++..|..|+.+|.+|+. +++.+..+..+|++.+++. +|.+.+.++++.|+++|.||+.  .++.+.
T Consensus        36 i~Pll~~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILPVLKDLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THHHHHHHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            555667799 9999999999999999999 9999999999999988765 5788899999999999999994  568899


Q ss_pred             HHHhcCcHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcC
Q 047123          283 AISAYGGVSVLIEAFRSGT---------------------ALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTS  340 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~  340 (579)
                      .+...|++++|..+++...                     ..+..+++.+|++|+. +++....+...+.++.++..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            9999999999999886311                     1244667888999986 56667788889999999998832


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH---HHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          341 ---SSNLAQENAADCIATLAASGEYFRLLIIQERGL---QRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       341 ---~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i---~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                         ...+++..++.||..++.+++.....+.+.+..   ..+..+... ..  ..+..+++.|+|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~--~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TD--PRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SC--TTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-Cc--HHHHHHHHHHHhHh
Confidence               346899999999999999988887888876643   333333333 33  46778899999874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.00  E-value=3.1e-09  Score=118.29  Aligned_cols=194  Identities=13%  Similarity=0.101  Sum_probs=153.4

Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc--ChhhHH
Q 047123          247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA--VEDIKA  323 (579)
Q Consensus       247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~--~~~~~~  323 (579)
                      ..+.|+++.|++++++.|..||++|.+|+.++.++..+...|+|..++. ++.+.+..++..|+++|+||+.  ..+.+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            4577788999999999999999999999999999999999999988765 6888899999999999999987  467889


Q ss_pred             HHHHcCCHHHHHHHhcCC--------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc
Q 047123          324 ALAEEGAVPVLVQSLTSS--------------S-------NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD  382 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~~~--------------~-------~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~  382 (579)
                      .++..|+++.|..++...              .       ..+...++.+|.+||..+......+.+.++++.|+..+.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            999999999999887421              1       1355678899999998777777888889999999998744


Q ss_pred             C-CCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcH---HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          383 S-TSSIVTVENALLAISSLSLS--DSAARILSSTTSF---IIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       383 ~-~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~---i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      . .....++..|+.+|.+++..  +....+.+.  +.   ...+..+. ..+...+..++..|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~--~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD--QETHVYDVLLKLA-TGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC--CSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc--chHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence            3 33357999999999999987  555666665  43   23333333 344445667788888863

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.97  E-value=1.6e-07  Score=103.14  Aligned_cols=327  Identities=14%  Similarity=0.139  Sum_probs=219.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .....+..+++.+.+.|.-+--.+..++..+++....     .++.+.+=|+ ++++.++-.|+++|+++..  ++..  
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~-~~n~~ir~lALr~L~~i~~--~e~~--  144 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLA-SRNPTFMGLALHCIANVGS--REMA--  144 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHH-SCCHHHHHHHHHHHHHHCC--HHHH--
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcC-CCCHHHHHHHHHHhhccCC--HHHH--
Confidence            3567788999999999999999999998877654422     2667777788 9999999999999999965  3322  


Q ss_pred             HHhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          243 VFEEGGLGPLLRIL--ETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       243 i~~~g~l~~Lv~lL--~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                         +..++++.+.|  .+.++.+|..|+.++.++.. +++.   +-..+.++.+..++.+.++.++.+|+.++..++...
T Consensus       145 ---~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          145 ---EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             ---HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence               34578899999  88899999999999999985 3332   112478899999999999999999999999987632


Q ss_pred             hhHHHHHHcCCHHHHHH----HhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhc
Q 047123          320 DIKAALAEEGAVPVLVQ----SLTSS-------------SNLAQENAADCIATLAAS-GEYFRLLIIQERGLQRLMHLIQ  381 (579)
Q Consensus       320 ~~~~~l~~~g~v~~Lv~----lL~~~-------------~~~v~~~a~~~L~~La~~-~~~~r~~l~~~g~i~~Lv~ll~  381 (579)
                      ..  .  -...+|.+++    ++..+             ++-.|...+..|..++.. ++..+..+.+  .+..++..+.
T Consensus       219 ~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~  292 (621)
T 2vgl_A          219 PE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ  292 (621)
T ss_dssp             HH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred             hH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence            11  1  1123444443    33221             578999999999988864 3444433322  3333333221


Q ss_pred             cC---------CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHH
Q 047123          382 DS---------TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRA  451 (579)
Q Consensus       382 ~~---------~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~  451 (579)
                      ..         +....+.-.|+.++..+...+   .+..   .++..|..++.+.++.+|..+...|..++ .++. ...
T Consensus       293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~---~~~~---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~  365 (621)
T 2vgl_A          293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP---NLLV---RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEA  365 (621)
T ss_dssp             SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHH
T ss_pred             cCcccccccccchHHHHHHHHHHHHHhcCCcH---HHHH---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHH
Confidence            11         101145566677777765321   2222   36777888888889999999999999998 3332 223


Q ss_pred             HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      +.+....++..++.+++..++..+...|..++.. .|...+      +..|.+.+...+.+ .+..++..+..++
T Consensus       366 ~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~I------v~eL~~yl~~~d~~-~~~~~v~~I~~la  432 (621)
T 2vgl_A          366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQI------VAEMLSYLETADYS-IREEIVLKVAILA  432 (621)
T ss_dssp             HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHH------HHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHH------HHHHHHHHHhcCHH-HHHHHHHHHHHHH
Confidence            3333777788883267788999999999998853 333333      34455555544444 5555555555554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.93  E-value=1.5e-08  Score=120.83  Aligned_cols=348  Identities=12%  Similarity=0.070  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ....++.++..|.+.++++|..|+.+|..++..-+..    .-...++.|+..+. ++++.+|..|+.+|..++......
T Consensus        46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~  120 (1230)
T 1u6g_C           46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----QVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPA  120 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCc
Confidence            3457888999999999999999999999998644331    11345778888888 888899999999999988632221


Q ss_pred             H-----HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123          240 R-----KIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA  311 (579)
Q Consensus       240 ~-----~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a  311 (579)
                      .     ..-.....+|.|+..+. +.+..++..+..+|..++..  +....  .-...++.|+..+.+.++.++..++.+
T Consensus       121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~a  198 (1230)
T 1u6g_C          121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIA  198 (1230)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            0     11122356899999998 47899999999999998731  11110  113466778888888889999999999


Q ss_pred             HHHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHH--hcCcHHHHHHhhccCCCChH
Q 047123          312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLII--QERGLQRLMHLIQDSTSSIV  388 (579)
Q Consensus       312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~--~~g~i~~Lv~ll~~~~~~~~  388 (579)
                      |..++......  + -...++.++..+... +..++..++.++..++...+.   .+.  -...++.+++.+.+.++  .
T Consensus       199 l~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~--~  270 (1230)
T 1u6g_C          199 LGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDD--E  270 (1230)
T ss_dssp             HHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCT--T
T ss_pred             HHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCH--H
Confidence            99998743221  2 224577788777543 235667788888888753221   111  14678888888876655  7


Q ss_pred             HHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-------------------------------------CCH
Q 047123          389 TVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-------------------------------------GNV  429 (579)
Q Consensus       389 ~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-------------------------------------~~~  429 (579)
                      +++.+..++..++..  +.....+.   ..++.++..+..                                     ...
T Consensus       271 vR~~a~~~l~~l~~~~~~~~~~~l~---~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  347 (1230)
T 1u6g_C          271 LREYCIQAFESFVRRCPKEVYPHVS---TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW  347 (1230)
T ss_dssp             THHHHHHHHHHHHHCTTCCCHHHHH---HHHHHHTTCCCCC------------------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHChHHHHHhHH---HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCH
Confidence            999999999888775  22222222   244444333321                                     112


Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc----------------hhH
Q 047123          430 LLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN----------------RKE  491 (579)
Q Consensus       430 ~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~----------------~~~  491 (579)
                      .++..|+.++..++ ..++.-..+.+. ++.|+..+ .+.+..+|..+..++..+......                ...
T Consensus       348 ~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1230)
T 1u6g_C          348 KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT  426 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHH
Confidence            46888999999988 333322333333 88888888 666789999999999888652110                011


Q ss_pred             HHh--hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          492 LVR--DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       492 ~~~--~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      .+.  -...++.+.+.+.+.+.. .+..++.++..+..
T Consensus       427 ~~~~~l~~ll~~l~~~l~~~~~~-vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          427 MLQSQVPNIVKALHKQMKEKSVK-TRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHTTHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHhccCCHH-HHHHHHHHHHHHHH
Confidence            110  023445566668777665 56666666666653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.91  E-value=9.5e-08  Score=105.02  Aligned_cols=295  Identities=14%  Similarity=0.134  Sum_probs=205.9

Q ss_pred             hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh--ccCCCHHHHHHHHHHHHHhhc
Q 047123          157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL--DFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL--~~~~~~~~~~~A~~aL~~La~  234 (579)
                      .|.+...+..+..-|++.++..|.-|+.+|..+.  .++..     +..++.+.++|  . +.++.+|..|+.++..+..
T Consensus       106 ~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~-----~~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          106 SELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMA-----EAFAGEIPKILVAG-DTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHH-----HHHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHH-----HHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence            3445556788888899999999999999999995  34432     34578888898  7 8899999999999999988


Q ss_pred             cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH----HHhcCC----------
Q 047123          235 ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLI----EAFRSG----------  300 (579)
Q Consensus       235 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv----~ll~~~----------  300 (579)
                      .+++..   ...+.++.+.++|.+.++.++..|..++..++.....  .+  ...++.++    .++..+          
T Consensus       178 ~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~  250 (621)
T 2vgl_A          178 TSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYY  250 (621)
T ss_dssp             HCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEET
T ss_pred             hChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhc
Confidence            444432   2248899999999999999999999999999853221  11  12334444    343322          


Q ss_pred             ---CHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhc---------CCCH--HHHHHHHHHHHHHhcCChhhH
Q 047123          301 ---TALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLT---------SSSN--LAQENAADCIATLAASGEYFR  364 (579)
Q Consensus       301 ---~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~---------~~~~--~v~~~a~~~L~~La~~~~~~r  364 (579)
                         ++..|...+..|..++..  ++.+..+.+  .++.++..+.         +.+.  .+...++.++..+.. ++...
T Consensus       251 ~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~  327 (621)
T 2vgl_A          251 FVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL  327 (621)
T ss_dssp             TEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred             CCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH
Confidence               578888888888888763  344444443  3333433221         1123  778888888888863 22222


Q ss_pred             HHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 047123          365 LLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNL  442 (579)
Q Consensus       365 ~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L  442 (579)
                           ..++..|..++.+.++  .++..++.+|..++.. +.. .++.   .....++..|. +.+..++..+..++..+
T Consensus       328 -----~~~~~~L~~~L~~~~~--niry~aL~~l~~l~~~~~~~-~~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l  396 (621)
T 2vgl_A          328 -----VRACNQLGQFLQHRET--NLRYLALESMCTLASSEFSH-EAVK---THIETVINALKTERDVSVRQRAVDLLYAM  396 (621)
T ss_dssp             -----HHHHHHHHHHSSCSCH--HHHHHHHHHHHHHTTCTTTH-HHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhccCcH-HHHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHH
Confidence                 2356778888875544  8999999999999876 322 2333   35677888888 89999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      +. +.+.+.+   +..|.+.+ ...+.+.+..++.+++.++..
T Consensus       397 ~~-~~Nv~~I---v~eL~~yl-~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          397 CD-RSNAQQI---VAEMLSYL-ETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             CC-HHHHHHH---HHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
T ss_pred             cC-hhhHHHH---HHHHHHHH-HhcCHHHHHHHHHHHHHHHHh
Confidence            73 3333333   45566666 344688899999999998753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.71  E-value=2.1e-05  Score=81.06  Aligned_cols=337  Identities=12%  Similarity=0.088  Sum_probs=210.9

Q ss_pred             HHHHHHHHhc-cCCHHHHHHHHHHHHHHhccCh---hhHHHHHhhCcH-HHHHH-hhccCCCHHHHHHHHHHHHHhhccC
Q 047123          163 FIRDIFTRLQ-IGGVEFKKKALESLLQLLKDDD---KSAAVVAKEGNV-GYLIS-LLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       163 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~g~v-~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      .+..++.+|+ ....+.....+.-+.++..+++   .....+.+.... ..+.. ++. .++.-.+..+..++..++...
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~-~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK-GDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC-SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhc-ccchHHHHHHHHHHHHHhccC
Confidence            5778888887 4678888888999999998877   444454443322 22333 334 455667777777767665312


Q ss_pred             hh---hHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcC-----------
Q 047123          237 DE---SRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRS-----------  299 (579)
Q Consensus       237 ~~---~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~-----------  299 (579)
                      ..   ....+...   +-++..|... +.+.+..++.+|..|...++.|..|.+.+  .++.++.+++.           
T Consensus       157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            22   12222211   0466666653 45667789999999999999999998754  36666654331           


Q ss_pred             ----C--CHHHHHHHHHHHHHhhcChhhHHHHHHcCCH--HHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh-----hHH
Q 047123          300 ----G--TALTQSHAVGAIRNIAAVEDIKAALAEEGAV--PVLVQSLT-SSSNLAQENAADCIATLAASGEY-----FRL  365 (579)
Q Consensus       300 ----~--~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v--~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~-----~r~  365 (579)
                          +  ..+++.+++-|++-|+..++....+...+..  +.|+..++ +.-+.+...++.+|.|+...++.     ..+
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                1  2467899999999999999988888877643  55666664 34678999999999999876521     223


Q ss_pred             HHHhcCcHHHHHHhhccCC-CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH-HHhc
Q 047123          366 LIIQERGLQRLMHLIQDST-SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL-GNLS  443 (579)
Q Consensus       366 ~l~~~g~i~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL-~~L~  443 (579)
                      .+...++++ +++.|.... .++++.+..-.....|-.                    -.+.-+. .-+...... +.|.
T Consensus       314 ~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~--------------------~~~~lts-fDeY~~El~sG~L~  371 (480)
T 1ho8_A          314 LLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILEN--------------------EYQELTS-FDEYVAELDSKLLC  371 (480)
T ss_dssp             HHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHH--------------------HHHTCCH-HHHHHHHHHHTCCC
T ss_pred             HHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHH--------------------HHHhccc-HHHHHHHHhcCCcc
Confidence            333344444 445444433 334444332221111111                    1111110 001111111 2233


Q ss_pred             CChhhHH-HHHHH------------HHHHHHhccC---------CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHH
Q 047123          444 ISDGNKR-AVASC------------MGSLIKLMEC---------PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMR  501 (579)
Q Consensus       444 ~~~~~~~-~i~~~------------v~~Lv~lL~~---------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~  501 (579)
                      =+|-.+. .|+..            +..|+++|+.         +.++.+..-||.=++.+++..++.+.++.+-|+-..
T Consensus       372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~  451 (480)
T 1ho8_A          372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD  451 (480)
T ss_dssp             CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred             cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence            1222211 22222            7888999842         346778888999999999999999999988889899


Q ss_pred             HHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          502 LMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       502 Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      ++++|.+++++ ++..|+-++..+.
T Consensus       452 VM~Lm~h~d~~-Vr~~AL~avQklm  475 (480)
T 1ho8_A          452 IMELLNHSDSR-VKYEALKATQAII  475 (480)
T ss_dssp             HHHHTSCSSHH-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHH-HHHHHHHHHHHHH
Confidence            99999999888 8888888776654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.58  E-value=1.3e-05  Score=90.83  Aligned_cols=373  Identities=12%  Similarity=0.145  Sum_probs=244.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh---hh
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND---ES  239 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~---~~  239 (579)
                      .+.+++..+...+...+..|+..+..+...+....  .+..+.+..|.+.+. .....  |.|+.++..|+....   ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence            45567777777666667788888888765431111  112367788888887 44333  999999999995221   22


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhh
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIA  316 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs  316 (579)
                      ...++  +.++.++..+.+....|+..|..++..+..  +++..     ...++.|+..+.+. ....+..|+.++..|+
T Consensus        90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~  162 (986)
T 2iw3_A           90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMV  162 (986)
T ss_dssp             HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            23333  678999999888888999999888888773  33332     33579999988765 5789999999999998


Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA--SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~--~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                      ..........-...||.+...+.+..+++...+..++..+|.  ++.+.      ...+|.|++.+...+   + ...++
T Consensus       163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~---~-~~~~~  232 (986)
T 2iw3_A          163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT---E-VPETV  232 (986)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT---H-HHHHH
T ss_pred             HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh---h-hHHHH
Confidence            632222122223478888888988899999999999999985  33332      567899999887753   2 33344


Q ss_pred             HHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CChhhHHHHHHH-HHHHHHhccCCCCH
Q 047123          395 LAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISDGNKRAVASC-MGSLIKLMECPKPV  469 (579)
Q Consensus       395 ~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~~-v~~Lv~lL~~~~~~  469 (579)
                      ..|..-.+- +.....+.-   .+|.|..-|...+..+++.++-++.|||   .+|.....|... +|.|-+..+...++
T Consensus       233 ~~l~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~p  309 (986)
T 2iw3_A          233 HLLGATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADP  309 (986)
T ss_dssp             HHHTTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSH
T ss_pred             HHhhcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCH
Confidence            555544444 222333332   5666777788889999999999999999   677777777777 89999888777899


Q ss_pred             hHHHHHHHHHHHhhcCCc-----chhHHHh--h-cccHHHHHhhcCCCch----hhhhHHHHHHHHHHhCCCChhHHHHH
Q 047123          470 GLQEAATDAVLSLLTVRS-----NRKELVR--D-EKSVMRLMQMLDPKNE----ALNKKFPVMVTAAVLGGGSNGCRKRL  537 (579)
Q Consensus       470 ~v~~~a~~aL~~L~~~~~-----~~~~~~~--~-~~~i~~Lv~lL~~~~~----~~~k~~av~~L~~L~~~~~~~~r~~i  537 (579)
                      ++|+.|..|+..|-....     .......  + ......+.+.+.....    +....|...+...+...+.  ....-
T Consensus       310 e~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~--~~~~~  387 (986)
T 2iw3_A          310 EAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI--IDQQA  387 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTC--CSHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccc--cchhH
Confidence            999999999998843211     1000000  0 0112334444543221    2256778888888887775  43444


Q ss_pred             HHcCchHHHHhhhccCCchHHHHHHHH
Q 047123          538 VAAGAYQHLQKLAETEVPGAKKVLQRL  564 (579)
Q Consensus       538 ~~~g~~~~L~~L~~~~~~~ak~~~~~l  564 (579)
                      +.....++|..++.  +..++.+++.+
T Consensus       388 ~~~~~~~~~~~~~~--~~~~~~~~~~~  412 (986)
T 2iw3_A          388 WFTHITPYMTIFLH--EKKAKDILDEF  412 (986)
T ss_dssp             HHHHTHHHHTTTSC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--hhhHHHHHHHH
Confidence            44555566665553  23455555543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=1.7e-06  Score=83.06  Aligned_cols=182  Identities=16%  Similarity=0.175  Sum_probs=138.2

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh-ccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL-DFHHQSSIREQAVLALSIIVSANDESRKIVF  244 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL-~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~  244 (579)
                      .+.+.+++.++..|..|+..|..++...+..... .-...++.|..++ + +.+..++..|+.+++.|+..-...-.. .
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITK-DSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            4777889999999999999999998763321100 0123577788888 6 889999999999999999621111111 1


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C-hh--
Q 047123          245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V-ED--  320 (579)
Q Consensus       245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~-~~--  320 (579)
                      -...+++++..+.+.+..++..+..+|..+......      ...++.+...+++.++.++..++..|..+.. . ++  
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            234799999999999999999999999999865432      1356888889999999999999999999644 3 22  


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ....+  ...+|.++.++.+.+..+|..|..++..++.
T Consensus       170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            22333  2478999999999999999999999999875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.50  E-value=1.3e-05  Score=74.02  Aligned_cols=187  Identities=13%  Similarity=0.080  Sum_probs=149.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+..|+.+|+..|+.++..|+..|.++.+.-+...+...-..+++.+++++. +.|..+...|+++|..|-.+.|-..+.
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            5778899999999999999999999999886666666666778999999999 999999999999999888755555555


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                      +..  +...|..++++++.-.++.++..+..+.--...+      +++..++.++.+.+..++..+..++.|++...+..
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            532  4678888999999999999999999994222222      35578888898999999999999999998733221


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG  360 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~  360 (579)
                      ..  -.+++..+-.++++.++.+++.|+..+..+.+..
T Consensus       185 ~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          185 GH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            11  1234555667889999999999999999998753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.47  E-value=6.5e-05  Score=84.12  Aligned_cols=271  Identities=15%  Similarity=0.094  Sum_probs=185.5

Q ss_pred             HHHHHHHhc---cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC--------HHHHHHHHHHHHHh
Q 047123          164 IRDIFTRLQ---IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ--------SSIREQAVLALSII  232 (579)
Q Consensus       164 v~~Lv~~L~---~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~--------~~~~~~A~~aL~~L  232 (579)
                      +..|-..|.   ++++..+.-|+..|+-+..+...        ..+..|...|. +.+        +.++..|+..|+.+
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~-~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIV-ENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHH-HHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHc-CccccccccccHHHHHHHHHHHHHH
Confidence            334444554   56778888888888888654421        14677777776 544        66888888888876


Q ss_pred             hccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHH
Q 047123          233 VSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGA  311 (579)
Q Consensus       233 a~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~a  311 (579)
                      .....  .     +.+++.|..+|.+.+..+++.|+.+|+.+-....+..      ++..|+..+. ..+..++..++.+
T Consensus       465 ~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalg  531 (963)
T 4ady_A          465 AMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVG  531 (963)
T ss_dssp             STTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHH
Confidence            43111  1     1246778888888777778888888887643222222      3466666543 4577888888888


Q ss_pred             HHHhhcChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123          312 IRNIAAVEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV  390 (579)
Q Consensus       312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~  390 (579)
                      |..+...        +...++.+++.|. +.++-++..++.++..-..+..+       ...++.|++.+.++.. +.++
T Consensus       532 LGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~-d~VR  595 (963)
T 4ady_A          532 LALINYG--------RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSN-DDVR  595 (963)
T ss_dssp             HHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSC-HHHH
T ss_pred             HHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCc-HHHH
Confidence            8877542        2235677777764 57888998888887754433222       2347777777765543 5799


Q ss_pred             HHHHHHHHHcccchhHHHHHhhcCcHHHHHHH-HHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCC
Q 047123          391 ENALLAISSLSLSDSAARILSSTTSFIIQLGE-FIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKP  468 (579)
Q Consensus       391 ~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~-lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~  468 (579)
                      ..|+.+|..+..++.         ..++.++. +++++++.+|..++.+|+.++ .++. .    +.++.|.+++ ++.+
T Consensus       596 raAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~----~aid~L~~L~-~D~d  660 (963)
T 4ady_A          596 RAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q----SAIDVLDPLT-KDPV  660 (963)
T ss_dssp             HHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H----HHHHHHHHHH-TCSS
T ss_pred             HHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H----HHHHHHHHHc-cCCC
Confidence            999999998876621         34555555 456789999999999999998 4432 1    1277788888 7889


Q ss_pred             HhHHHHHHHHHHHhhcCCc
Q 047123          469 VGLQEAATDAVLSLLTVRS  487 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~~~  487 (579)
                      ..||..|+.+|+.+.....
T Consensus       661 ~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          661 DFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCc
Confidence            9999999999999976543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.46  E-value=0.00016  Score=81.00  Aligned_cols=300  Identities=12%  Similarity=0.018  Sum_probs=200.2

Q ss_pred             HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123          170 RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF--HHQSSIREQAVLALSIIVSANDESRKIVFEEG  247 (579)
Q Consensus       170 ~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~--~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g  247 (579)
                      .+.......+..|+.+|+-+-..+.        .+++..|-..|..  ++++.++..|+.+|+.+.....   ..     
T Consensus       366 Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~~-----  429 (963)
T 4ady_A          366 WLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---RD-----  429 (963)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---HH-----
T ss_pred             hhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---HH-----
Confidence            3333344556777777777765542        2346666666641  3468899999999999877222   11     


Q ss_pred             CHHHHHHHHccCC--------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          248 GLGPLLRILETGS--------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       248 ~l~~Lv~lL~~~~--------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                      ++..|...|.+.+        +.++..|+..|+-......+.      .++..|..++.+.+..++..++.+|..+-...
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT  503 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT  503 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence            4677777777655        668888888888765332222      24577888888877777777888877663322


Q ss_pred             hhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          320 DIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       320 ~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .+..      ++..|+..+ .+.++.++..++..|+.+..+++.         .++.+++.+..... +.++..++.++.
T Consensus       504 gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~d-p~vRygaa~alg  567 (963)
T 4ady_A          504 GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDE-SLLRYGGAFTIA  567 (963)
T ss_dssp             CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred             CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence            2221      344555554 456788999999999988766543         47777777765443 467777777666


Q ss_pred             Hcccc-hhHHHHHhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHH
Q 047123          399 SLSLS-DSAARILSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAA  475 (579)
Q Consensus       399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a  475 (579)
                      .-+.+ .+.        .++..|++.+ .+.+..+|..|+.+|..+. .+++       .++.++.++.++.++.+|..+
T Consensus       568 lAyaGTGn~--------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-------~v~rlv~~L~~~~d~~VR~gA  632 (963)
T 4ady_A          568 LAYAGTGNN--------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-------TVPRIVQLLSKSHNAHVRCGT  632 (963)
T ss_dssp             HHTTTSCCH--------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-------SHHHHTTTGGGCSCHHHHHHH
T ss_pred             HHhcCCCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-------HHHHHHHHHHhcCCHHHHHHH
Confidence            43333 221        3566566665 4567899999999999987 4442       267777766577889999999


Q ss_pred             HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      +.||+.++...++       ...+..|..++.+.+.. ++..|+.+|..+.....
T Consensus       633 alALGli~aGn~~-------~~aid~L~~L~~D~d~~-Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          633 AFALGIACAGKGL-------QSAIDVLDPLTKDPVDF-VRQAAMIALSMILIQQT  679 (963)
T ss_dssp             HHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHH-HHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHhccCCCc-------HHHHHHHHHHccCCCHH-HHHHHHHHHHHHhcCCc
Confidence            9999999764432       23456777888877777 77778777887776543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.35  E-value=4.8e-08  Score=84.56  Aligned_cols=118  Identities=17%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.++..|++.++.+|..|+..|..+..            ..++.|+++|+ ++++.+|..|+.+|+++..        
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLS-NEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGG-CSCHHHHHHHHHHHGGGCS--------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHc-CCCHHHHHHHHHHHHhcCC--------
Confidence            47788899999999999998888876532            12689999999 9999999999999998875        


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN  314 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  314 (579)
                         ...++.|+..|++.++.++..++++|.++..          ...++.|+.++++.++.++..++.+|.+
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               3458999999999999999999999999862          2467899999998899999999988764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.35  E-value=0.0004  Score=61.54  Aligned_cols=213  Identities=13%  Similarity=0.202  Sum_probs=158.9

Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhc-ChhhH
Q 047123          246 EGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAA-VEDIK  322 (579)
Q Consensus       246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~-~~~~~  322 (579)
                      ...+..++.+|++.-..++.+|...+.+++. .++....+     +..|+.+++ ++....-.....++..++. .|+.-
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            4578899999999999999999999999995 55544333     466666654 5666665666777777776 44433


Q ss_pred             HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123          323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL  402 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~  402 (579)
                      .     +.||.+..-+.-+++.++.+...+|..++..+|..-     .+.++-+..++.+.+.  .-+-.|...|..+..
T Consensus       106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~--~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNR--EDKLTALNFIEAMGE  173 (253)
T ss_dssp             H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSH--HHHHHHHHHHHTCCT
T ss_pred             H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhc
Confidence            2     356777777778899999999999999998777643     3345667777775553  556667777766655


Q ss_pred             chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123          403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLS  481 (579)
Q Consensus       403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~  481 (579)
                      +  .-..+.   -++++|..+|.+++.-|+..|..+|.+++ .++..|+.+.+    -+.-+ ++.+..++....++|+.
T Consensus       174 n--~~~yv~---PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~----kl~e~-~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          174 N--SFKYVN---PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK----RLEEL-NDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             T--THHHHG---GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH----HHHHC-CCSCHHHHHHHHHHHHH
T ss_pred             c--CccccC---cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH----HHHHh-cCcHHHHHHHHHHHHHH
Confidence            4  223333   48999999999999999999999999999 88887776444    34455 67788999999999998


Q ss_pred             hhcC
Q 047123          482 LLTV  485 (579)
Q Consensus       482 L~~~  485 (579)
                      |..-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8754

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.31  E-value=2.9e-05  Score=78.18  Aligned_cols=308  Identities=10%  Similarity=0.070  Sum_probs=169.7

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 047123          175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR  254 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~  254 (579)
                      ++.-...++..+..+...++..-..- -.......++++. +++...+.-.--++.+++. .++-  .+   =++..|.+
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e-~t~lf~~v~kl~~-s~d~~lKrLvYLyl~~~~~-~~~e--~i---Lv~Nsl~k  111 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTE-ATEAFFAMTKLFQ-SNDPTLRRMCYLTIKEMSC-IAED--VI---IVTSSLTK  111 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHGGGG-CCCHHHHHHHHHHHHHHTT-TSSC--GG---GGHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCC-CHHH--HH---HHHHHHHh
Confidence            44444556666666544332211000 0122345567888 9999999988888888887 3221  11   35788888


Q ss_pred             HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHH
Q 047123          255 ILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPV  333 (579)
Q Consensus       255 lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~  333 (579)
                      =+.++++-++..|.++|+++...+ ...     ...+.+-+.+.+.++.++..|+.+..+|.. .++    +++ +.++.
T Consensus       112 Dl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~  180 (355)
T 3tjz_B          112 DMTGKEDSYRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNE  180 (355)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHH
T ss_pred             hcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHH
Confidence            899999999999999999998643 222     234667778889999999999999988876 333    222 68889


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC-CChHHHHHHHHHHHHcccchhHHHHHhh
Q 047123          334 LVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST-SSIVTVENALLAISSLSLSDSAARILSS  412 (579)
Q Consensus       334 Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~~~~~~l~~~  412 (579)
                      +-.++.+.++.++.+|+.+|..+...+..         .+..|+..+..+. .++-.+-.-.+.+..++..+.  .-...
T Consensus       181 l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~~~~  249 (355)
T 3tjz_B          181 AQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GSRDS  249 (355)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hhhHH
Confidence            99999999999999999999999875532         2444555444432 123334343444434433220  11112


Q ss_pred             cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHH
Q 047123          413 TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKEL  492 (579)
Q Consensus       413 ~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~  492 (579)
                        ..++.+..+|++.++.|..+|+.++..+...+.  ..+..++..|..++ .+.++.+|..|...|..++...++.-..
T Consensus       250 --~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~~v~~  324 (355)
T 3tjz_B          250 --PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPSAVTA  324 (355)
T ss_dssp             ---------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHH-HSSSSSSHHHHHHCC-------------
T ss_pred             --HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcHHHHH
Confidence              466777778889999999999999999874221  11122266777778 6667899999999999988765433221


Q ss_pred             HhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123          493 VRDEKSVMRLMQMLDPKNEALNKKFPVMVTA  523 (579)
Q Consensus       493 ~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~  523 (579)
                           .-..+.+++.+++.. +...|+..|.
T Consensus       325 -----~n~~ie~li~d~n~s-I~t~Aittll  349 (355)
T 3tjz_B          325 -----CNLDLENLVTDANRS-IATLAITTLL  349 (355)
T ss_dssp             -------------------------------
T ss_pred             -----HHHHHHHHccCCcHh-HHHHHHHHhh
Confidence                 224567777766644 4444444443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=3.8e-06  Score=81.07  Aligned_cols=189  Identities=14%  Similarity=0.107  Sum_probs=136.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHH-HhccChhhHHHHHh-hCcHHHHHHhh-ccCCCHHHHHHHHHHHHHhhccC--hhhH
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQ-LLKDDDKSAAVVAK-EGNVGYLISLL-DFHHQSSIREQAVLALSIIVSAN--DESR  240 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~g~v~~Lv~LL-~~~~~~~~~~~A~~aL~~La~~~--~~~~  240 (579)
                      .+...+++.++..|..|+..|.. ++.+.++......+ ...+..|.+.+ + +.+..++..|+.+|+.|+..-  +...
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhccccccc
Confidence            34567799999999999999999 87543321100001 23477788888 6 889999999999999998622  1221


Q ss_pred             -HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          241 -KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAIS--AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       241 -~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                       ...  .-.+++++..+++....+++.+..+|..+..+-+- ....  -...++.|+..+++.++.++..++.+|..+..
T Consensus        99 ~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             222  23689999999999999999999999888842110 0010  11367889999999999999999999988875


Q ss_pred             Chh---hHHHHHH-cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          318 VED---IKAALAE-EGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       318 ~~~---~~~~l~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ...   ....-.- ...+|.+.+++.+.++.+|..|..+|..++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            322   1111122 5789999999999999999999999998863

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.25  E-value=9.7e-08  Score=82.58  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 047123          202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA  281 (579)
Q Consensus       202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~  281 (579)
                      ....++.|+.+|+ ++++.+|..|+.+|+.+..            ..++.|++.|++.++.++..|+++|.++..     
T Consensus        10 ~~~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMA-DENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CC-SSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhc-CCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence            4567889999999 9999999999988887765            237999999999999999999999999863     


Q ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123          282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT  355 (579)
Q Consensus       282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~  355 (579)
                           ...++.|+..+.++++.++..++++|.++..          ..+++.|+.++++.++.++..++.+|.+
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 2357999999999999999999999998752          2357889999998899999999988764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.19  E-value=0.0013  Score=58.32  Aligned_cols=213  Identities=15%  Similarity=0.183  Sum_probs=152.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++..++..|..+-+-++..|+..+..++..-++...-     .+..|+.+++.+.....-...+++++.++.-.|+...
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~  106 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK  106 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence            47889999999999999999999999999887765433     3455666665466666655667889999985555443


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED  320 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~  320 (579)
                           +++|.+..=..-+++.++.+...+|..++. +|+...     ++++-+..++.+.+..-+-.++..+..+..   
T Consensus       107 -----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe---  173 (253)
T 2db0_A          107 -----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE---  173 (253)
T ss_dssp             -----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---
T ss_pred             -----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc---
Confidence                 347888888888999999999999999984 554433     345778888888886555555555544432   


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123          321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL  400 (579)
Q Consensus       321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L  400 (579)
                      +...-+ ...+|.|..+|.+++.-++..++++|.+++..++..|..+.      .-++-+++.++  .++.....+|..+
T Consensus       174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~--lv~~~V~egL~rl  244 (253)
T 2db0_A          174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSS--LVNKTVKEGISRL  244 (253)
T ss_dssp             TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCH--HHHHHHHHHHHHH
T ss_pred             cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHH--HHHHHHHHHHHHH
Confidence            222211 23678899999999999999999999999998888766542      22333344443  6666666666655


Q ss_pred             c
Q 047123          401 S  401 (579)
Q Consensus       401 ~  401 (579)
                      .
T Consensus       245 ~  245 (253)
T 2db0_A          245 L  245 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.16  E-value=1.3e-05  Score=76.93  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=132.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC--hhhHHHHH
Q 047123          251 PLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAV--EDIKAALA  326 (579)
Q Consensus       251 ~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~--~~~~~~l~  326 (579)
                      .+.+.+.+.+...|..++..|..+... ++..... -...++.|...+. +.+..++..++.++..++..  +.....  
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~--   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY--   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH--
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH--
Confidence            477888888999999999999998743 3211000 0235778888884 89999999999999999852  222222  


Q ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h
Q 047123          327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D  404 (579)
Q Consensus       327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~  404 (579)
                      -...+|.++..+.+.++.++..+..+|..+..... .      ...++.+...+++.++  .++..++..|..+...  +
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~--~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNP--SVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHcCC
Confidence            23378999999999999999999999999986432 1      2356778888887655  8999999999996543  2


Q ss_pred             h--HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          405 S--AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       405 ~--~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      .  ....+.   .+++.|..++.+.++++|..|..++..++
T Consensus       167 ~~~~~~~l~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          167 TALNKKLLK---LLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             GGCCHHHHH---HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            1  223333   37888889999899999999999988887

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.12  E-value=3.6e-05  Score=77.56  Aligned_cols=275  Identities=13%  Similarity=0.086  Sum_probs=156.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .-...+..+++.|.+.|.-.--.+..++...++..  +    ++..|.+=++ ++++-+|-.|+++|+++.. . +..+ 
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i--L----v~Nsl~kDl~-~~N~~iR~lALRtL~~I~~-~-~m~~-  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI--I----VTSSLTKDMT-GKEDSYRGPAVRALCQITD-S-TMLQ-  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG--G----GHHHHHHHHH-SSCHHHHHHHHHHHHHHCC-T-TTHH-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH--H----HHHHHHhhcC-CCcHhHHHHHHHHHhcCCC-H-HHHH-
Confidence            44567788999999999988888888876644332  1    3777888888 9999999999999999987 2 2222 


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK  322 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~  322 (579)
                          ...+++.+.|.+.++.|+..|+.+..+|....  .+.+  .+.+..+-+++.+.++.++.+|+.+|..+..++.. 
T Consensus       139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-  209 (355)
T 3tjz_B          139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-  209 (355)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred             ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence                23556667777889999999999999998532  2222  26788999999999999999999999999875421 


Q ss_pred             HHHHHcCCHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          323 AALAEEGAVPVLVQSLTSS---SNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       323 ~~l~~~g~v~~Lv~lL~~~---~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                             ++..++..+..+   ++-.+...+..+..++..+ +.     .....++.+..++++.++  .+.-.|+.+|.
T Consensus       210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~--aVvyEa~k~I~  275 (355)
T 3tjz_B          210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHE--MVVYEAASAIV  275 (355)
T ss_dssp             -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSH--HHHHHHHHHHT
T ss_pred             -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCCh--HHHHHHHHHHH
Confidence                   234444444432   4555555666555555443 22     113445666666765554  78888999998


Q ss_pred             HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHH
Q 047123          399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATD  477 (579)
Q Consensus       399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~  477 (579)
                      .+.....  ....   .++..|..++.+.++.+|..|...|..+. .+|+.-.   .+-..+.+++ .+.+..+.-.|..
T Consensus       276 ~l~~~~~--~~~~---~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~---~~n~~ie~li-~d~n~sI~t~Ait  346 (355)
T 3tjz_B          276 NLPGCSA--KELA---PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT---ACNLDLENLV-TDANRSIATLAIT  346 (355)
T ss_dssp             C----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             hccCCCH--HHHH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH---HHHHHHHHHc-cCCcHhHHHHHHH
Confidence            8765311  1222   24556777788999999999999888887 5554322   2244555666 4445555554444


Q ss_pred             HH
Q 047123          478 AV  479 (579)
Q Consensus       478 aL  479 (579)
                      .|
T Consensus       347 tl  348 (355)
T 3tjz_B          347 TL  348 (355)
T ss_dssp             --
T ss_pred             Hh
Confidence            43

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.06  E-value=0.00017  Score=66.68  Aligned_cols=221  Identities=14%  Similarity=0.143  Sum_probs=152.6

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hh
Q 047123          328 EGAVPVLVQSLTSSSNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DS  405 (579)
Q Consensus       328 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~  405 (579)
                      ++.+..+..++++.++.++.+++.+|..+...- ...+... -...++.++.++.+.+.  .+.-.|.++|..|-.+ +-
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dE--kval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENE--KVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHTTCCB
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccch--hHHHHHHHHHHHHHcCCCC
Confidence            346788999999999999999999999988642 2233333 35568999999977775  8999999999999887 32


Q ss_pred             HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          406 AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       406 ~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ...-..   ..+..|..++.++++-.+.+++..+..+..-...++-    +..+.+++ .+++..++.++..+|.+++..
T Consensus       109 ~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V----~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          109 GSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV----RTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             CHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHH----HHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHH----HHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            222222   2566788888999999999999999999611111111    66788889 999999999999999999976


Q ss_pred             CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-hhHHHHHHHcCchHHHHhhhc-cCCc----hHHH
Q 047123          486 RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQKLAE-TEVP----GAKK  559 (579)
Q Consensus       486 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~~L~~-~~~~----~ak~  559 (579)
                      +.+...+   +..+..+-.+|.+.++. .++.++..+-.+...+- ++.-..+  .++......|++ .+.|    .||+
T Consensus       181 S~D~~i~---~~I~~eI~elL~~eD~~-l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~  254 (265)
T 3b2a_A          181 SADSGHL---TLILDEIPSLLQNDNEF-IVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKK  254 (265)
T ss_dssp             CSSCCCG---GGTTTTHHHHHTCSCHH-HHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred             cCCHHHH---HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHH
Confidence            5332211   22334455667777766 88899998888877662 1111111  223333445663 3444    4666


Q ss_pred             HHHHHh
Q 047123          560 VLQRLA  565 (579)
Q Consensus       560 ~~~~l~  565 (579)
                      +.+++.
T Consensus       255 v~~~le  260 (265)
T 3b2a_A          255 VSDLID  260 (265)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.99  E-value=0.00041  Score=68.12  Aligned_cols=152  Identities=14%  Similarity=0.044  Sum_probs=126.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .+..++..|++++.+.+..++-.|..+..++......++..+|+..|++... .++...+..+++++.+|.. +......
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~-~v~Gm~g  196 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLML-FVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHh-ccccccc
Confidence            4778899999999999999999999977788899999999999999999999 8999999999999999999 8777766


Q ss_pred             HH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhc----------CcHHHHHHHhc---CCCHHHHHH
Q 047123          243 VF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE-NAWAISAY----------GGVSVLIEAFR---SGTALTQSH  307 (579)
Q Consensus       243 i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~-~~~~i~~~----------g~i~~Lv~ll~---~~~~~~~~~  307 (579)
                      ++ +...|..+..++.+....+...|..+|..++.+.+ +...+.+.          .-+..|+.+|+   +.|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            66 44578888888888889999999999999986443 43333221          12779999997   678999999


Q ss_pred             HHHHHHHhh
Q 047123          308 AVGAIRNIA  316 (579)
Q Consensus       308 a~~aL~nLs  316 (579)
                      +...+-.+-
T Consensus       277 amtLIN~lL  285 (339)
T 3dad_A          277 TVTLINKTL  285 (339)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888775553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.94  E-value=4e-05  Score=73.82  Aligned_cols=201  Identities=10%  Similarity=0.126  Sum_probs=138.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-hhc-ChhhHHHHHH-cCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCh--hhHHH
Q 047123          293 LIEAFRSGTALTQSHAVGAIRN-IAA-VEDIKAALAE-EGAVPVLVQSL-TSSSNLAQENAADCIATLAASGE--YFRLL  366 (579)
Q Consensus       293 Lv~ll~~~~~~~~~~a~~aL~n-Ls~-~~~~~~~l~~-~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~--~~r~~  366 (579)
                      +.+.+++.+..-|..++..|.. +.. .+.......+ ...+..|.+.+ ++.+..++..|+.+|..++.+-.  .+.. 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~-   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK-   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-
Confidence            3456678899999999999998 763 3221100000 12466777788 78899999999999999985211  1110 


Q ss_pred             HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHH--HhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARI--LSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l--~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                      -.-.-.++.++..+.+...  .+++.+..++.+++.. +.....  ++   ..++.|...|++.++.+|+.++.+|..+.
T Consensus       100 ~y~~~llp~ll~~l~dkk~--~V~~aa~~al~~i~~~~~~~~~~~~l~---~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKP--SVIEAIRKALLTICKYYDPLASSGRNE---DMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHHHSCTTCTTCTTH---HHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHccccccCCcHH---HHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            0112357888888877664  7899999999988875 110010  22   36778889999999999999999999998


Q ss_pred             -CCh----hhHHHH-HHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCC
Q 047123          444 -ISD----GNKRAV-ASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDP  508 (579)
Q Consensus       444 -~~~----~~~~~i-~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~  508 (579)
                       ..+    .....+ .+-++.|.+++ ++.+.++|..|..+|+.++..       + .+..+.+.+.-|++
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~-------v-G~~~~~p~l~~Ld~  236 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKI-------F-GMNTFVKTLEHLDN  236 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHH-------H-CSGGGHHHHHHSCH
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH-------h-CHHHHHHHHHHHhH
Confidence             222    233455 44499999999 777899999999999999863       2 13345566655643

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.92  E-value=0.001  Score=68.65  Aligned_cols=231  Identities=14%  Similarity=0.120  Sum_probs=155.1

Q ss_pred             HHHHhhccC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHcc---------------C--CHHHHHHH
Q 047123          208 YLISLLDFH-HQSSIREQAVLALSIIVSANDESRKIVFEEG--GLGPLLRILET---------------G--SMPLKEKA  267 (579)
Q Consensus       208 ~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g--~l~~Lv~lL~~---------------~--~~~v~~~a  267 (579)
                      .++..|. . ++...+..++++|..|.. .+++|..+.+.+  .+++++.++..               +  ...++..+
T Consensus       171 ~~~~~L~-~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~  248 (480)
T 1ho8_A          171 NLINILQ-NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHS  248 (480)
T ss_dssp             HHHHHHH-CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHH
T ss_pred             HHHHHhc-cccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHH
Confidence            4555666 4 346667889999999999 999999998654  46777655442               1  24568899


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcH--HHHHHHhcC-CCHHHHHHHHHHHHHhhcCh-----hhHH-HHHHcCCHHHHHHHh
Q 047123          268 AIGVEAITTDPENAWAISAYGGV--SVLIEAFRS-GTALTQSHAVGAIRNIAAVE-----DIKA-ALAEEGAVPVLVQSL  338 (579)
Q Consensus       268 a~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~-----~~~~-~l~~~g~v~~Lv~lL  338 (579)
                      +-+++-|+.+++....+...+..  ..|+.+++. .-.++.+-++.+|+|+....     .... .++..+++ .++..|
T Consensus       249 ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l-~~l~~L  327 (480)
T 1ho8_A          249 LLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSL  327 (480)
T ss_dssp             HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch-HHHHHH
Confidence            99999999999888888877754  677777775 45788899999999998743     1112 23334444 455555


Q ss_pred             cC---CCHHHHHHHHHHHH-------HHhcCChh--------------hH-HHHHh----------cCcHHHHHHhhccC
Q 047123          339 TS---SSNLAQENAADCIA-------TLAASGEY--------------FR-LLIIQ----------ERGLQRLMHLIQDS  383 (579)
Q Consensus       339 ~~---~~~~v~~~a~~~L~-------~La~~~~~--------------~r-~~l~~----------~g~i~~Lv~ll~~~  383 (579)
                      ..   .++++.+..-....       .+++.++.              .+ +.+..          ...+..|++++++.
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            32   35555444333222       22222211              11 12222          12468888988742


Q ss_pred             --------CCChHHHHHHHHHHHHcccc-hh-HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          384 --------TSSIVTVENALLAISSLSLS-DS-AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       384 --------~~~~~~~~~A~~aL~~L~~~-~~-~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                              +.++.+...||.=|..++.. +. +..+-+.  |+-..+.+++.+.+++|+.+|..++..+-
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l--g~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT--GGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH--SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc--CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                    12246788888888888887 44 4444455  88889999999999999999999988764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.83  E-value=0.0011  Score=65.10  Aligned_cols=153  Identities=15%  Similarity=0.121  Sum_probs=120.1

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH-Hc
Q 047123          251 PLLRILETGSMPLKEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA-EE  328 (579)
Q Consensus       251 ~Lv~lL~~~~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~  328 (579)
                      .++..|.+++...+..+..-|.. +..+.+....|+..+|+..|+.....++...+.+++.++.++..+...-..++ ..
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            34556666777778888888888 66788999999999999999999999999999999999999998877665555 44


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC----------cHHHHHHhhccCC-CChHHHHHHHHHH
Q 047123          329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER----------GLQRLMHLIQDST-SSIVTVENALLAI  397 (579)
Q Consensus       329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g----------~i~~Lv~ll~~~~-~~~~~~~~A~~aL  397 (579)
                      ..|..+..++.+.+..+...|+..|..++..++.....+.+.-          -.+.|+.+|...+ .+.+++.+|...|
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI  281 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI  281 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            5788888888888899999999999999877664444333211          2679999997322 2358888888877


Q ss_pred             HHcccc
Q 047123          398 SSLSLS  403 (579)
Q Consensus       398 ~~L~~~  403 (579)
                      ..+-..
T Consensus       282 N~lL~~  287 (339)
T 3dad_A          282 NKTLAA  287 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            766654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.34  E-value=0.044  Score=63.21  Aligned_cols=333  Identities=10%  Similarity=0.054  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 047123          177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF----HHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL  252 (579)
Q Consensus       177 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~----~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~L  252 (579)
                      .++..++.+|..++...++...-. -..+++...+++..    ..+..+...++..+..++. .+..+..+.....++.+
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~l  338 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNI  338 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHH
Confidence            356778888888876554432211 23445555555531    2346888899999998887 55544333211233333


Q ss_pred             H-----HHHc----c-----CC--------------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc------
Q 047123          253 L-----RILE----T-----GS--------------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR------  298 (579)
Q Consensus       253 v-----~lL~----~-----~~--------------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~------  298 (579)
                      +     ..+.    +     .+              ...+..|..+|..|+..-+  ..+. ...++.+...+.      
T Consensus       339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~  415 (960)
T 1wa5_C          339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDP  415 (960)
T ss_dssp             HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC--
T ss_pred             HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCc
Confidence            3     2221    0     01              1356667777777774321  1110 112233333344      


Q ss_pred             CCCHHHHHHHHHHHHHhhcChhhHHHHHHc-----CCHH----HHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHHH
Q 047123          299 SGTALTQSHAVGAIRNIAAVEDIKAALAEE-----GAVP----VLVQSLTSS---SNLAQENAADCIATLAASGEYFRLL  366 (579)
Q Consensus       299 ~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~-----g~v~----~Lv~lL~~~---~~~v~~~a~~~L~~La~~~~~~r~~  366 (579)
                      +.+...++.|+.++..++..-..+..-...     ...+    .++..+.+.   ++-++..++++++.++..-.  .+.
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence            456788999999999997421100000000     1112    223334555   88999999999999987421  111


Q ss_pred             HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h---------hHHHHHhhcCcHHHHHHHHHhcCC---HH--H
Q 047123          367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D---------SAARILSSTTSFIIQLGEFIKRGN---VL--L  431 (579)
Q Consensus       367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~---------~~~~l~~~~~g~i~~L~~lL~~~~---~~--v  431 (579)
                        -...++.+++.+.+.+  ..++..|+.+|.+++.. +         ....+...-...+..|+.+++...   ..  .
T Consensus       494 --l~~~l~~l~~~L~d~~--~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~  569 (960)
T 1wa5_C          494 --LIELMPILATFLQTDE--YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE  569 (960)
T ss_dssp             --HHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred             --HHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence              2345677777776544  48999999999998863 1         112121111146677777887651   11  2


Q ss_pred             HHHHHHHHHHhc--CChhhHHHHHHHHHHHHH----hccCCCCHhHHHHHHHHHHHhhcC-CcchhHHHhhcccHHHHHh
Q 047123          432 QQVSSSLLGNLS--ISDGNKRAVASCMGSLIK----LMECPKPVGLQEAATDAVLSLLTV-RSNRKELVRDEKSVMRLMQ  504 (579)
Q Consensus       432 ~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~----lL~~~~~~~v~~~a~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~  504 (579)
                      ...+..+|..+.  ..++...++..-++.|+.    ..++..+...+....++|+.++.. .+.....+ +...++.+..
T Consensus       570 ~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~  648 (960)
T 1wa5_C          570 NEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLT  648 (960)
T ss_dssp             CHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHH
Confidence            245556666654  223333322222444443    333455677778889999999875 22222222 2455667777


Q ss_pred             hcCCCchhhhhHHHHHHH
Q 047123          505 MLDPKNEALNKKFPVMVT  522 (579)
Q Consensus       505 lL~~~~~~~~k~~av~~L  522 (579)
                      .|.....+ ...++..++
T Consensus       649 iL~~~~~~-~~~~~~~i~  665 (960)
T 1wa5_C          649 VFSEDIQE-FIPYVFQII  665 (960)
T ss_dssp             HHHTTCTT-THHHHHHHH
T ss_pred             HHHhhhHh-hHHHHHHHH
Confidence            77655433 333444333

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.29  E-value=0.056  Score=62.30  Aligned_cols=343  Identities=10%  Similarity=0.073  Sum_probs=188.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC------hh
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN------DE  238 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~------~~  238 (579)
                      .++..+...+..+|.+...++..++..+ ++.     =.+.++.|+++++ ++++..++.++.++..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~-s~~~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLS-NDDMVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCC-SSCTTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            4556666667888999999998887532 211     1567899999998 888888999999999998722      12


Q ss_pred             hHHHH--HhcCCHHHHHHHH-------ccCCH---------HHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhc
Q 047123          239 SRKIV--FEEGGLGPLLRIL-------ETGSM---------PLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFR  298 (579)
Q Consensus       239 ~~~~i--~~~g~l~~Lv~lL-------~~~~~---------~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~  298 (579)
                      .+..+  +-....+++++++       .....         ++...++.++.++....- ...+.+  ...++.+..++.
T Consensus       163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~  241 (960)
T 1wa5_C          163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDI-PEFFEDNIQVGMGIFHKYLS  241 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCC-CHHHHHTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHc
Confidence            22222  1122345555443       33211         233346667776653211 111111  122344455553


Q ss_pred             CC------C---------HHHHHHHHHHHHHhhc-Chh-hHHHHHHcCCHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Q 047123          299 SG------T---------ALTQSHAVGAIRNIAA-VED-IKAALAEEGAVPVLVQSLT-----SSSNLAQENAADCIATL  356 (579)
Q Consensus       299 ~~------~---------~~~~~~a~~aL~nLs~-~~~-~~~~l~~~g~v~~Lv~lL~-----~~~~~v~~~a~~~L~~L  356 (579)
                      ..      +         ..++..++.+|..+.. +++ ....+  ...++.+...+.     ..++.+...++..+..+
T Consensus       242 ~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~  319 (960)
T 1wa5_C          242 YSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV  319 (960)
T ss_dssp             CCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence            21      1         2466777888877764 322 11111  123444455553     34678899999999888


Q ss_pred             hcCChhhHHHHHhcCcHHHHH-----Hhhc----c-----------------CCCChHHHHHHHHHHHHcccchhHHHHH
Q 047123          357 AASGEYFRLLIIQERGLQRLM-----HLIQ----D-----------------STSSIVTVENALLAISSLSLSDSAARIL  410 (579)
Q Consensus       357 a~~~~~~r~~l~~~g~i~~Lv-----~ll~----~-----------------~~~~~~~~~~A~~aL~~L~~~~~~~~l~  410 (579)
                      +... ..+..+.....++.++     ..+.    +                 .+.....+..|..+|..|+..-. +.++
T Consensus       320 ~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~  397 (960)
T 1wa5_C          320 TRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVT  397 (960)
T ss_dssp             HTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHH
T ss_pred             hCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHH
Confidence            7532 2222111113333333     2221    0                 01112456677777777776611 2222


Q ss_pred             hhcCcHHHHHHHHHh------cCCHHHHHHHHHHHHHhcCC---hh--hHH-----HHHHH-HHHHHHhccCC--CCHhH
Q 047123          411 SSTTSFIIQLGEFIK------RGNVLLQQVSSSLLGNLSIS---DG--NKR-----AVASC-MGSLIKLMECP--KPVGL  471 (579)
Q Consensus       411 ~~~~g~i~~L~~lL~------~~~~~v~~~A~~aL~~L~~~---~~--~~~-----~i~~~-v~~Lv~lL~~~--~~~~v  471 (579)
                      ..   +++.+...+.      +.+...++.|..++..++..   .+  ...     .+.+- +..++..+.+.  .++-+
T Consensus       398 ~~---~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v  474 (960)
T 1wa5_C          398 NI---FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL  474 (960)
T ss_dssp             HH---HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred             HH---HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence            22   3444444454      45567888999999998721   11  000     12121 12233334222  38899


Q ss_pred             HHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          472 QEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      |..++.+++.++..-.  ....  ...++.+++.|.+.+.. ++.+|+.++.+|+.
T Consensus       475 r~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~d~~~~-V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          475 RVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYV-VYTYAAITIEKILT  525 (960)
T ss_dssp             HHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCCCChh-HHHHHHHHHHHHHh
Confidence            9999999999986531  2222  34567788888766544 88999999999886

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.18  E-value=0.027  Score=64.98  Aligned_cols=294  Identities=10%  Similarity=0.074  Sum_probs=153.8

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh---c-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123          174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL---D-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL  249 (579)
Q Consensus       174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL---~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l  249 (579)
                      .+...+..|+.++..++..-....     ...++.++.++   . .++++.++..++.+++.++.......+.+  ..++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence            566788888999998875433221     23344444433   2 02479999999999999886212111111  2346


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcC-h-hhHH
Q 047123          250 GPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAV-E-DIKA  323 (579)
Q Consensus       250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~-~-~~~~  323 (579)
                      +.|+..|+   +.++..|+.++.+++.  +++..+..  .+.+..|..++..+  +...+..+..++..++.. + +...
T Consensus       549 ~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~  623 (971)
T 2x1g_F          549 NLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP  623 (971)
T ss_dssp             HHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            66677773   6789999999999994  33444432  34666677777763  567888888888887652 2 2222


Q ss_pred             HHHHcCCHHHHHHHh----cCC--CHHHHHHHHHHHHHHhcCChhh-------------HH--HHHhcCcHHHHHHhhcc
Q 047123          324 ALAEEGAVPVLVQSL----TSS--SNLAQENAADCIATLAASGEYF-------------RL--LIIQERGLQRLMHLIQD  382 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL----~~~--~~~v~~~a~~~L~~La~~~~~~-------------r~--~l~~~g~i~~Lv~ll~~  382 (579)
                      ...+ ..+++++..+    ...  +++.+.....++..++..-...             ..  .-.-...++.+..++..
T Consensus       624 ~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~  702 (971)
T 2x1g_F          624 KYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM  702 (971)
T ss_dssp             HHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence            2221 2334444333    332  3434444444554443210000             00  01123456777777665


Q ss_pred             CCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH-
Q 047123          383 STSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC-  455 (579)
Q Consensus       383 ~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~-  455 (579)
                      ...+..+.+.+++++..++..  +.....+..   +++.++..++....   ..+...+..+.    .+++....+.+. 
T Consensus       703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~---~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~  776 (971)
T 2x1g_F          703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQD---LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLL  776 (971)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH---HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhhhhhccccHHH---HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            433358999999999998765  222222221   33444433333221   12333344333    333333333333 


Q ss_pred             ---HHHHHHhccCC------CCHhHHHHHHHHHHHhhcCC
Q 047123          456 ---MGSLIKLMECP------KPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       456 ---v~~Lv~lL~~~------~~~~v~~~a~~aL~~L~~~~  486 (579)
                         +..+..++...      .++++++.....+..+....
T Consensus       777 ~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~  816 (971)
T 2x1g_F          777 REFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKI  816 (971)
T ss_dssp             HHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhC
Confidence               44455555221      35677787777777776543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.16  E-value=0.059  Score=61.19  Aligned_cols=283  Identities=11%  Similarity=0.072  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHH
Q 047123          219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN--AWAISAYGGVSVLIEA  296 (579)
Q Consensus       219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~l  296 (579)
                      ..-+..++..+..+.......  ..+..+.+..+.+.+......  +.|+.++..|+.....  ...-.-.+.++.++..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  103 (986)
T 2iw3_A           28 ADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN  103 (986)
T ss_dssp             TTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence            344455666666654412111  111135677777777664333  9999999999943221  1112223678999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHh--cC
Q 047123          297 FRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQ--ER  371 (579)
Q Consensus       297 l~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g  371 (579)
                      +.+....++..|..++..+..  +++...     .++|.|+..+.+. .=..+..|+.++..|+...+   .++..  ..
T Consensus       104 ~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~  175 (986)
T 2iw3_A          104 AGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPE  175 (986)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccc
Confidence            999889999999988877754  443332     3578888888654 35788999999999986432   23322  56


Q ss_pred             cHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh-H
Q 047123          372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN-K  449 (579)
Q Consensus       372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~-~  449 (579)
                      .+|.+...+.+-.+  +++..|..++..+|.. ++.+.  +   .+++.|++.+.+.+. + .++...|..-+.-.+. .
T Consensus       176 ~~p~~~~~~~d~k~--~v~~~~~~~~~~~~~~~~n~d~--~---~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~  246 (986)
T 2iw3_A          176 LIPVLSETMWDTKK--EVKAAATAAMTKATETVDNKDI--E---RFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTP  246 (986)
T ss_dssp             HHHHHHHHTTCSSH--HHHHHHHHHHHHHGGGCCCTTT--G---GGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCH
T ss_pred             hhcchHhhcccCcH--HHHHHHHHHHHHHHhcCCCcch--h---hhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecc
Confidence            77888887776655  8999999999999986 33221  1   588999999987744 3 3345555544422222 2


Q ss_pred             HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123          450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV  525 (579)
Q Consensus       450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L  525 (579)
                      ..+.=.+|.|.+-| ...+..++..++-++.||+.--++   ...|+  ..-++.+-+..+.-..+..++.+-.++..|
T Consensus       247 ~~l~~~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          247 ATLSIMVPLLSRGL-NERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhh-ccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            22222288999999 667888889999999999875444   33344  344555555555443332555544444433

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.01  E-value=0.11  Score=59.87  Aligned_cols=337  Identities=9%  Similarity=0.057  Sum_probs=175.9

Q ss_pred             ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh-c-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123          172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL-D-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL  249 (579)
Q Consensus       172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL-~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l  249 (579)
                      ...++..+..++.+++.++..-...     ....++.++..+ . .++++.++..++.+++.++.......+.  -..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHH
Confidence            4457788888899999887543221     123345555443 1 0357889999999999988721222222  24788


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCh--hhHH
Q 047123          250 GPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAVE--DIKA  323 (579)
Q Consensus       250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~~--~~~~  323 (579)
                      +.++..|.+  +.++..|+.++.+++..  ++..+..  ...+..|..++..+  +...+.....++..+...-  +...
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            889988865  78999999999999842  2222321  23445555666642  4678888888888886532  2222


Q ss_pred             HHHHcCCHHHHHHHhc----C-CCHHHHH---HHHHHHHHHhcC----Ch-h--------------hH--HHHHhcCcHH
Q 047123          324 ALAEEGAVPVLVQSLT----S-SSNLAQE---NAADCIATLAAS----GE-Y--------------FR--LLIIQERGLQ  374 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~----~-~~~~v~~---~a~~~L~~La~~----~~-~--------------~r--~~l~~~g~i~  374 (579)
                      ... ...++.+...+.    . .+++.+.   ..+.+|..+...    .+ .              .+  -.-......+
T Consensus       608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            222 224445444442    2 2444443   444555444321    00 0              00  0111233455


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCChhhHHH
Q 047123          375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLSISDGNKRA  451 (579)
Q Consensus       375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~  451 (579)
                      .+..++.....+..+.+.++.++..+...  +....++..   .++.++.-... ..+.+-.-....+.....++.....
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~---~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~  763 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ---LCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP  763 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHH
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHH---HHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHH
Confidence            55555554333357888899988887643  211111211   22233333332 3333333333334433333222222


Q ss_pred             ---HHHH-HHHHHHhcc-C-CCCHhHHHHHHHHHHHhhcCCcchhHHHhh----cccHHHHHhhcCCCchhhhhHHHHHH
Q 047123          452 ---VASC-MGSLIKLME-C-PKPVGLQEAATDAVLSLLTVRSNRKELVRD----EKSVMRLMQMLDPKNEALNKKFPVMV  521 (579)
Q Consensus       452 ---i~~~-v~~Lv~lL~-~-~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~----~~~i~~Lv~lL~~~~~~~~k~~av~~  521 (579)
                         +.+. +..++.++. + ..+++++......|..+....+..  +...    ...+..++..|...+.. ..+.++..
T Consensus       764 ~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~l~~  840 (963)
T 2x19_B          764 IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFPEAP-TVKASCGF  840 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCSCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCCCHH-HHHHHHHH
Confidence               2222 455555442 1 246888988888888887543321  1110    11233445555544444 44555555


Q ss_pred             HHHHh
Q 047123          522 TAAVL  526 (579)
Q Consensus       522 L~~L~  526 (579)
                      +..+.
T Consensus       841 l~~l~  845 (963)
T 2x19_B          841 FTELL  845 (963)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            55554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.022  Score=55.27  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=123.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhH--HHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh--h-h
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSA--AVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--E-S  239 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~--~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--~-~  239 (579)
                      +-.+|.+.++..|.+|+..|..+....+...  ....  -...++.+.+.+. +.+..++..++.++..++....  . .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5688999999999999999998876543221  1111  1234566677888 9999999999999998875211  1 1


Q ss_pred             H--HHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          240 R--KIVFEEGGLGPLLRI-LETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       240 ~--~~i~~~g~l~~Lv~l-L~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      +  ....-...++.|+.- |.+....++..+..++..+.........     .++.++..+.+.++.++..++..|..+.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            1  112223467777764 6777888898888888777632211111     3466777888899999999998887764


Q ss_pred             cC--hh--hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123          317 AV--ED--IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA  358 (579)
Q Consensus       317 ~~--~~--~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~  358 (579)
                      ..  ..  .....+ ..+++.+..++.+.++.||..|..++..+-.
T Consensus       168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            31  11  111111 1245567778899999999999999988754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.69  E-value=0.037  Score=52.99  Aligned_cols=181  Identities=12%  Similarity=0.062  Sum_probs=122.9

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC--hhhHHH
Q 047123          165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN--DESRKI  242 (579)
Q Consensus       165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~--~~~~~~  242 (579)
                      .++...|.+.|...+..|+..|......+++......+. .+.++.--+. +.++.+...++.+|..+...-  .+++-.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            356777788899999999999998876655432211111 2343332334 678888889888888764311  011100


Q ss_pred             HHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFE-EGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      -.+ .-.+|.|+.-+.+....+|..+-.++..+..-      .......+.+++-+++.+...+..++..+..+-.....
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence            011 23589999999888899999988888777531      11122557788888999999999999888877442211


Q ss_pred             HHHHHHcCCH---HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          322 KAALAEEGAV---PVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       322 ~~~l~~~g~v---~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                      .    ...++   +.+..++.+.+..++..|+.++..+-
T Consensus       201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            1    23478   99999999999999999999988653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.64  E-value=0.71  Score=53.06  Aligned_cols=231  Identities=9%  Similarity=0.054  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH---c--cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcH
Q 047123          217 HQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL---E--TGSMPLKEKAAIGVEAITTD-PENAWAISAYGGV  290 (579)
Q Consensus       217 ~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL---~--~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i  290 (579)
                      .+...++.|+.+++.++.......     ...++.++.++   .  +.++.++..+++++..++.. .++...  -..++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence            567789999999999987322211     13344444444   3  34789999999999998831 111110  12356


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH--HcCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCh-hhHH
Q 047123          291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA--EEGAVPVLVQSLTS--SSNLAQENAADCIATLAASGE-YFRL  365 (579)
Q Consensus       291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~--~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~~La~~~~-~~r~  365 (579)
                      +.|+..+ +  +.++..|++++.+++.  +.+..+.  -...+..+..++..  .+...+..+..++..++..-+ ....
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~  623 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP  623 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            6777766 3  6789999999999984  2333333  22355566666765  356888899999998875321 1111


Q ss_pred             HHHhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccc-h---h--------------HHHHHhhcCcHHHHHHHH
Q 047123          366 LIIQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLS-D---S--------------AARILSSTTSFIIQLGEF  423 (579)
Q Consensus       366 ~l~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~-~---~--------------~~~l~~~~~g~i~~L~~l  423 (579)
                      ... ...++.++.    +++....++..+.....++..|+.. .   .              ...+..   .+++.+..+
T Consensus       624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~i~~~l~~~  699 (971)
T 2x1g_F          624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ---RTMPIFKRI  699 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH---TTHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH---HHHHHHHHH
Confidence            111 223333333    3333210123445555555555432 1   0              011122   366666666


Q ss_pred             Hhc--CCHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHhc
Q 047123          424 IKR--GNVLLQQVSSSLLGNLSI--SDGNKRAVASCMGSLIKLM  463 (579)
Q Consensus       424 L~~--~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~v~~Lv~lL  463 (579)
                      +..  .+..+.+.+..++.+++.  ..+....+...++.|+..+
T Consensus       700 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~  743 (971)
T 2x1g_F          700 AEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASF  743 (971)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHH
Confidence            654  367899999999999771  1122222222266666666

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.49  E-value=0.1  Score=59.99  Aligned_cols=314  Identities=12%  Similarity=0.060  Sum_probs=168.0

Q ss_pred             HHHHHHHhc----cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc--Ch
Q 047123          164 IRDIFTRLQ----IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA--ND  237 (579)
Q Consensus       164 v~~Lv~~L~----~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~--~~  237 (579)
                      ++.+...|.    ..+++.+..++.+|.....-  -....+...+.++.+.++|. .  +++++.|+.+|..+...  .+
T Consensus       191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~-~--~~~r~~A~ecL~ei~~k~~~~  265 (980)
T 3ibv_A          191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ-I--EELRCAACETMTEIVNKKMKP  265 (980)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT-S--HHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC-C--hHHHHHHHHHHHHHHHcCCCh
Confidence            444445553    37888899999999999863  23456677889999999987 4  89999999999988762  23


Q ss_pred             hhHHHHHhcCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-------CC-----ccHHHHHh--cCcHHHHHHHhcCCC
Q 047123          238 ESRKIVFEEGGLGPLLRILE--TGSMPLKEKAAIGVEAITT-------DP-----ENAWAISA--YGGVSVLIEAFRSGT  301 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~--~~~~~v~~~aa~~L~~Ls~-------~~-----~~~~~i~~--~g~i~~Lv~ll~~~~  301 (579)
                      +.+..++..=.+...+..+.  ..+.+..+..++.+..++.       .+     +.+.....  .+.++.++..+.+++
T Consensus       266 ~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~  345 (980)
T 3ibv_A          266 LEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY  345 (980)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred             hhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence            33333333211222232222  3577776666655544431       11     11111111  357888888888888


Q ss_pred             HHHHHHHHHHHHHhhcChh-------hHHHHH--HcCCHHHHHHHhcCC------C------H----HHHHHHHHHHHHH
Q 047123          302 ALTQSHAVGAIRNIAAVED-------IKAALA--EEGAVPVLVQSLTSS------S------N----LAQENAADCIATL  356 (579)
Q Consensus       302 ~~~~~~a~~aL~nLs~~~~-------~~~~l~--~~g~v~~Lv~lL~~~------~------~----~v~~~a~~~L~~L  356 (579)
                      .++-..++..+..+.....       ......  =...++.+++-+..+      +      .    +.|......+..+
T Consensus       346 deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~  425 (980)
T 3ibv_A          346 DETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTI  425 (980)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            7776666655544432100       011100  011333333333211      1      1    2333333222222


Q ss_pred             hcCChhhHHHHHhcCcHHHHH-Hhhc---cCCCChHHHHHHHHHHHHcccc-hh-HHHHH---hhcCcHHHHHHHHHh--
Q 047123          357 AASGEYFRLLIIQERGLQRLM-HLIQ---DSTSSIVTVENALLAISSLSLS-DS-AARIL---SSTTSFIIQLGEFIK--  425 (579)
Q Consensus       357 a~~~~~~r~~l~~~g~i~~Lv-~ll~---~~~~~~~~~~~A~~aL~~L~~~-~~-~~~l~---~~~~g~i~~L~~lL~--  425 (579)
                      +.-++...-... ...+..++ +.+.   +.+.  ...|.++.+|..++.+ .. .....   ...+..++.+..+++  
T Consensus       426 ~~l~~~~~l~~~-~~~i~~~l~~~l~~~~~~~W--~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~  502 (980)
T 3ibv_A          426 NSIDSSLFSSYM-YSAITSSLSTAATLSPENSW--QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ  502 (980)
T ss_dssp             HHHCHHHHHHHH-HHHHHHHHHHHTTSCHHHHH--HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS
T ss_pred             HhcChHHHHHHH-HHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC
Confidence            221211100000 00122211 2222   1123  6688999999998886 21 11100   011135556666665  


Q ss_pred             ---cCCHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHH--hccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          426 ---RGNVLLQQVSSSLLGNLSISDGNK-RAVASCMGSLIK--LMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       426 ---~~~~~v~~~A~~aL~~L~~~~~~~-~~i~~~v~~Lv~--lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                         ..++.++..+..++.+.+..-... +.+...++.++.  .+ ..++..++..|+.++.+++..-
T Consensus       503 i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          503 VCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHh
Confidence               678999999999999998221111 122222555666  55 4566889999999999998643

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.38  E-value=0.02  Score=59.59  Aligned_cols=245  Identities=15%  Similarity=0.113  Sum_probs=155.1

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-----cc--------CCHHHHHHHHHHH
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL-----ET--------GSMPLKEKAAIGV  271 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL-----~~--------~~~~v~~~aa~~L  271 (579)
                      +...|+.-|- ++.-++|--|+.+|+.+...+............ ...++++     +.        --..||+.++.+|
T Consensus       175 fcE~L~~DLF-dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          175 FFEQISDNLL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             TTHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            4566666666 889999999999999887633221111111111 2333333     21        1356999999999


Q ss_pred             HHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123          272 EAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAAD  351 (579)
Q Consensus       272 ~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~  351 (579)
                      +.+ ..-+..     ..++..|+..+.....+++..+.-.|..+..   .-..  -.++++.++..|++.+++|+..|+.
T Consensus       253 GaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          253 SRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             HHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence            999 422221     5667777776677889999999999988821   1001  2346788888899999999999999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123          352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLL  431 (579)
Q Consensus       352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v  431 (579)
                      +|.-++. .+..      ...+..+...|.+.++-..........|..|+..+..   ...++..+++|..++++.-..|
T Consensus       322 tLiPIA~-p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          322 LLCHFPI-TDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHTTSCC-SSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred             Hhhhhcc-hhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence            9999882 2111      2234444444443321113455666777777776320   1112368999999999999999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          432 QQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       432 ~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      |..+..++..+. +...-+.+.+      ++| -..+.+++..+.++..
T Consensus       392 R~AVL~TL~tfL-~~~~LRLIFQ------NIL-LE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLS-EESIDFLVAE------VVL-IEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCC-CHHHHHHHHH------HHH-HCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhhHHHHHHH------HHH-hCCcHHHHHHHHHHHH
Confidence            999999998887 2222222222      344 4556788887777653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.37  E-value=0.01  Score=61.82  Aligned_cols=244  Identities=12%  Similarity=0.114  Sum_probs=155.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhh--cc----CCC---HHHHHHHHHHHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLL--DF----HHQ---SSIREQAVLALSI  231 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL--~~----~~~---~~~~~~A~~aL~~  231 (579)
                      +...|+.-|-+..++.|.-|+..|+++.+..........  ..+..-.|+-++  ++    .+|   ..|||.|+++|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            667888888999999999999999999865432111101  113233333322  21    122   6899999999999


Q ss_pred             hhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123          232 IVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA  311 (579)
Q Consensus       232 La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a  311 (579)
                      + ..-++.      ..++..++..+....-+++..+.-.|..+.   +....  -.++++.++..|++.+.+++..|+.+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            8 523332      345555665667778999999999999982   11100  25567888888999999999999999


Q ss_pred             HHHhhcChhhHHHHHHcCCHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123          312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSSS--NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT  389 (579)
Q Consensus       312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~  389 (579)
                      |.-++ .++.-..     ++..+-..|.+.+  .......+..|+.|+..+...   ......+|.|..++.....  .+
T Consensus       323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtIT--SV  391 (800)
T 3oc3_A          323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVP--EV  391 (800)
T ss_dssp             HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSH--HH
T ss_pred             hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcH--HH
Confidence            99888 2222111     2233334443322  123455566777776644321   1123678888888888776  89


Q ss_pred             HHHHHHHHHHcccchhHHHHHhhcCcHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 047123          390 VENALLAISSLSLSDSAARILSSTTSFIIQ-LGEFIKRGNVLLQQVSSSLLG  440 (579)
Q Consensus       390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~-L~~lL~~~~~~v~~~A~~aL~  440 (579)
                      |..++.+|..+...           .++.. +.++|-..+.+++..+..+-.
T Consensus       392 R~AVL~TL~tfL~~-----------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLSEE-----------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCCCH-----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999888732           23332 233455677788877776653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.30  E-value=0.24  Score=48.56  Aligned_cols=222  Identities=14%  Similarity=0.068  Sum_probs=160.0

Q ss_pred             HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHHh-cCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR----LLIIQ-ERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r----~~l~~-~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .+...+.+..|+..|..=+-+.+..+..+..++.......+    ..+.+ ...+..|+..-+    ++++--.+-..|+
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLR  148 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHH
Confidence            45667888888888888788899999999888876543321    22222 222333333222    2356777778888


Q ss_pred             Hcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHHHHHhccCCCCHhH
Q 047123          399 SLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGSLIKLMECPKPVGL  471 (579)
Q Consensus       399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~Lv~lL~~~~~~~v  471 (579)
                      .+..+ .....++..  +.+..+.++++.++-++...|...+..|- .+......+...     ....-++| .+++.-.
T Consensus       149 ecir~e~la~~iL~~--~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVT  225 (341)
T 1upk_A          149 ECIRHEPLAKIILWS--EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVT  225 (341)
T ss_dssp             HHHTSHHHHHHHHHS--GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHH
T ss_pred             HHHHhHHHHHHHhcc--HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchh
Confidence            88888 556667777  77888999999999999999999998887 777666666555     67777899 8889999


Q ss_pred             HHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC--hhHHHHHH--HcCchH
Q 047123          472 QEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS--NGCRKRLV--AAGAYQ  544 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~--~~~r~~i~--~~g~~~  544 (579)
                      +..+...|+.|..+..|.   ...+.+...+..++.+|.+.+.. ++-.|.-+.--+..++.  ++....++  ....+.
T Consensus       226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~-Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~  304 (341)
T 1upk_A          226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRN-IQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE  304 (341)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhc-hhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence            999999999999887774   45666677888999999999888 78888887777776663  23333333  244555


Q ss_pred             HHHhhhccC
Q 047123          545 HLQKLAETE  553 (579)
Q Consensus       545 ~L~~L~~~~  553 (579)
                      .|.++....
T Consensus       305 fl~~f~~d~  313 (341)
T 1upk_A          305 FLSKFQNDR  313 (341)
T ss_dssp             HHHHTTTTC
T ss_pred             HHHhCCCCC
Confidence            666665544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.04  E-value=1.5  Score=50.22  Aligned_cols=138  Identities=14%  Similarity=0.033  Sum_probs=89.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-CCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcH
Q 047123          339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-STSSIVTVENALLAISSLSLS-DSAARILSSTTSF  416 (579)
Q Consensus       339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~  416 (579)
                      .+.+-..++.++.+++.++..-...     ....++.++..+.. ..+++.++..++.++..++.. ......+.   .+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~---~v  530 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN---SV  530 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT---TT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH---HH
Confidence            3446678899999999998643210     02334555554322 112357899999999998876 22123444   47


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCC-CCHhHHHHHHHHHHHhhcCC
Q 047123          417 IIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECP-KPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       417 i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~-~~~~v~~~a~~aL~~L~~~~  486 (579)
                      ++.++..|.+  +.++..|+.++.+++  ........+.+-+..|..++... -+...+....++++.++...
T Consensus       531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          531 LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            8888888854  889999999999999  22222222222266677777332 35788999999999998654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.02  E-value=0.28  Score=46.09  Aligned_cols=222  Identities=14%  Similarity=0.158  Sum_probs=141.4

Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccC---------CHH---HHHHHHHHHHHhcCCCccHHHH
Q 047123          218 QSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETG---------SMP---LKEKAAIGVEAITTDPENAWAI  284 (579)
Q Consensus       218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~---------~~~---v~~~aa~~L~~Ls~~~~~~~~i  284 (579)
                      +++.|+.|+.-|+.=-+..++....+=. -|.+..|++=+-+-         +..   -..+|...|..++.+++.+..|
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            3556888866666544423333333333 36666665544321         122   2345666678888999999999


Q ss_pred             HhcCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          285 SAYGGVSVLIEAFRSGT-----ALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       285 ~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                      .+....-.|..++...+     +.++-.+++++..|..  +++.-..+.+...||..++.+..+++-.+..|...+..+-
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            99998777777777543     3578889999999876  5566677778899999999999999999999999999987


Q ss_pred             cCChhhHHHHHh--------cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHH--HHHHHHhc
Q 047123          358 ASGEYFRLLIIQ--------ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFII--QLGEFIKR  426 (579)
Q Consensus       358 ~~~~~~r~~l~~--------~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~--~L~~lL~~  426 (579)
                      .++... ..+..        ..++..++..+... ++..+.++.+++-..|+.+ ..++.+...-+..+.  .+..++ .
T Consensus       174 ~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l-~  250 (268)
T 2fv2_A          174 LDDTGL-AYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVL-K  250 (268)
T ss_dssp             HSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHH-T
T ss_pred             ccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHH-h
Confidence            765432 22211        12333344433222 2358889999999999888 333333322111110  112222 3


Q ss_pred             CCHHHHHHHHHHHHHh
Q 047123          427 GNVLLQQVSSSLLGNL  442 (579)
Q Consensus       427 ~~~~v~~~A~~aL~~L  442 (579)
                      +|+.++..-...+.|+
T Consensus       251 ~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          251 DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SCHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            5677777766666665

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.89  E-value=0.87  Score=52.50  Aligned_cols=139  Identities=6%  Similarity=-0.068  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 047123          174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-----HQSSIREQAVLALSIIVSANDESRKIVFEEGG  248 (579)
Q Consensus       174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-----~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~  248 (579)
                      .++..+..++.+++.++..-......-.-..+++.|+.++. .     +...++..++.+|+..+.--....+.+  ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~-~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV-KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh-ccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence            47889999999999998654333222233456778888875 3     224456677788887665111111111  233


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh------cCcHHHHHH----HhcCCCHHHHHHHHHHHHHhhc
Q 047123          249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA------YGGVSVLIE----AFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~----ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      +..|+..+.+.++.++..||+++.+|+.  +++..+..      ..-++.++.    ....-+...+.....++..+..
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4455555666678999999999999995  45555542      123444443    3334456666777777777765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.42  E-value=0.27  Score=46.12  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-----HHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHH
Q 047123          180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-----SSIREQAVLALSIIVSA-NDESRKIVFEEGGLGPLL  253 (579)
Q Consensus       180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-----~~~~~~A~~aL~~La~~-~~~~~~~i~~~g~l~~Lv  253 (579)
                      ..|+..|..+++ +++.+..+.+....-.|.-+|+ ..+     .-.|..++.+++.+... +++.-..+.+...+|..+
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~-t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLH-TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHH-CCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhc-cccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            455666666664 7889999998887777777887 443     46888899999998852 556667778889999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--------cCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123          254 RILETGSMPLKEKAAIGVEAITTDPENAWAISA--------YGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVEDIKAA  324 (579)
Q Consensus       254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~~~~~~  324 (579)
                      +.++.|+.-.+..|..++.++-.++..-.-+.+        ..++..++. +.+..++.+.++.++|-..|+.++..++.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a  231 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA  231 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999998765543333322        123333443 34567889999999999999999988887


Q ss_pred             HHH
Q 047123          325 LAE  327 (579)
Q Consensus       325 l~~  327 (579)
                      +..
T Consensus       232 L~~  234 (268)
T 2fv2_A          232 LRQ  234 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.38  E-value=2.1  Score=44.00  Aligned_cols=165  Identities=17%  Similarity=0.157  Sum_probs=111.2

Q ss_pred             ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123          172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP  251 (579)
Q Consensus       172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~  251 (579)
                      ..|+...+.-|+..|....+.-|+...     .++..++.|.+ +.+..+|..|.+.|-.+|. + ++...+     ...
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck-~-~~i~ki-----aDv  104 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCE-DEDVSIRRQAIKELPQFAT-G-ENLPRV-----ADI  104 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHT-CSSHHHHHHHHHHGGGGCC-T-TCHHHH-----HHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHh-cccHHHHHHHHHhhHHHhh-h-hhhhhH-----HHH
Confidence            357889999999999999888777644     36788999999 9999999999999999999 5 554444     678


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHHc
Q 047123          252 LLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEE  328 (579)
Q Consensus       252 Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~~~  328 (579)
                      |+++|.+.++.-...+-.+|..|-. ++        .+.+..|+..+..+++.+++.++..|..-..  ..+.-..-.+.
T Consensus       105 L~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~  176 (507)
T 3u0r_A          105 LTQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEE  176 (507)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHH
Confidence            9999998887767777777766653 22        3456778877777888889888877743322  11111111122


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          329 GAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                      -++..+.+.|.+-+..=-...+.+|..+-
T Consensus       177 ~i~~~ikK~L~DVT~~EF~L~m~lL~~lk  205 (507)
T 3u0r_A          177 LILTESKKVLEDVTGEEFVLFMKILSGLK  205 (507)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence            23344555565544433344445554443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.49  Score=45.55  Aligned_cols=183  Identities=13%  Similarity=0.051  Sum_probs=117.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcChh---hHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh---hH
Q 047123          293 LIEAFRSGTALTQSHAVGAIRNIAAVED---IKAALA--EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY---FR  364 (579)
Q Consensus       293 Lv~ll~~~~~~~~~~a~~aL~nLs~~~~---~~~~l~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~---~r  364 (579)
                      |-+-|.+.+...|..+...|..+.....   ......  -...++.+-..+.+.+..++..++.++..++..-..   .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5567888999999999998877654211   111111  122455666778899999999999999988753211   11


Q ss_pred             --HHHHhcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047123          365 --LLIIQERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG  440 (579)
Q Consensus       365 --~~l~~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~  440 (579)
                        ....-...++.|+.- +.+..  ..++..+..++..++.. ....       .++..+...+.+.++.++..++..|.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k--~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSR--ATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence              111123445666543 43333  47888888888777654 1111       23445666778899999999888888


Q ss_pred             HhcC----ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          441 NLSI----SDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       441 ~L~~----~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ++..    ..-.-+.+... ++.+.+++ .+.+..||..|..++..+-..
T Consensus       165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHH
Confidence            7751    11112233333 77788889 777899999999999988753

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.00  E-value=0.57  Score=45.80  Aligned_cols=182  Identities=10%  Similarity=-0.038  Sum_probs=111.1

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH----HHHcc-CCHHHHHHHHHHHHHhcCCCcc
Q 047123          206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL----RILET-GSMPLKEKAAIGVEAITTDPEN  280 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv----~lL~~-~~~~v~~~aa~~L~~Ls~~~~~  280 (579)
                      +..+.++++ .+. +.+--++..++.+.. ++.....+.+.+.-..++    ..+.. +.+..+..++++++|+-.++..
T Consensus       105 l~~l~kil~-WP~-~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g  181 (304)
T 3ebb_A          105 LQILWKAIN-CPE-DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG  181 (304)
T ss_dssp             HHHHHHHHT-SCT-TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred             HHHHHHHHc-CCH-HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence            556666665 443 344456666666666 776666665543333343    33322 3566789999999999988877


Q ss_pred             HHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh--h-HHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHH
Q 047123          281 AWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED--I-KAALAEEGAVPVLVQSLT-SSSNLAQENAADCIA  354 (579)
Q Consensus       281 ~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~--~-~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~  354 (579)
                      +..+...  .+++.+...+.+.+..++..++..+.|++....  . .+.  ...+...+..++. ..+.+....++-+|+
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            7766542  355555555556788999999999999986211  0 011  1113344444453 357899999999999


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123          355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       355 ~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      ++...+...++....-|....+-++.....+ .++.+.+
T Consensus       260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~-~kv~~~~  297 (304)
T 3ebb_A          260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEP-AKVSECC  297 (304)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSS-HHHHHHH
T ss_pred             HHHhCChhHHHHHHHcCHHHHHHHHHhCCCc-hhHHHHH
Confidence            9998776655544445544444444444232 4544443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.83  E-value=1.2  Score=43.63  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHHHHHh
Q 047123          387 IVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-NKRAVASCMGSLIKL  462 (579)
Q Consensus       387 ~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~~~~i~~~v~~Lv~l  462 (579)
                      +..+..+++++.|+-.. ..+..++.....++..+...+.+.+..++..++.++.|++.  ..+ ......+.+..+..+
T Consensus       162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i  241 (304)
T 3ebb_A          162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI  241 (304)
T ss_dssp             HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence            46788999999999887 33444443311345555555556788999999999999991  110 011111115555566


Q ss_pred             ccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHh
Q 047123          463 MECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ  504 (579)
Q Consensus       463 L~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~  504 (579)
                      ++..++.+....+..||++|+..+...+.+.+ .-++...++
T Consensus       242 l~~~~d~EalyR~LvALGtL~~~~~~~~~lak-~l~~~~~v~  282 (304)
T 3ebb_A          242 LEVVQDLEATFRLLVALGTLISDDSNAVQLAK-SLGVDSQIK  282 (304)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHGG
T ss_pred             HhccCCHHHHHHHHHHHHHHHhCChhHHHHHH-HcCHHHHHH
Confidence            65667899999999999999987666666665 344444433

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.57  E-value=8.8  Score=44.33  Aligned_cols=350  Identities=11%  Similarity=0.069  Sum_probs=180.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccCh--------hhH-----HHHHh--hCcHHHHHHhhccCCCHHHHHHHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDD--------KSA-----AVVAK--EGNVGYLISLLDFHHQSSIREQAVL  227 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--------~~~-----~~i~~--~g~v~~Lv~LL~~~~~~~~~~~A~~  227 (579)
                      +++.++..++ .++..+..++..|..++.+-.        ..+     ..+..  ...+..+...+...++..++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            6888888887 555555556666666553211        011     11221  1223444455552456788999999


Q ss_pred             HHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc----HHHHHh--cCcHHHHHH----
Q 047123          228 ALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PEN----AWAISA--YGGVSVLIE----  295 (579)
Q Consensus       228 aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~----~~~i~~--~g~i~~Lv~----  295 (579)
                      ++.....-.+  ...+.....++.+++.+- .+++++..|+.+|..+...  ++.    ...+..  .+.+..+..    
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p  294 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMP  294 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCC
Confidence            9987654122  223455566666663222 3788999999999998843  121    111111  122222211    


Q ss_pred             -------Hh---cCCCHHHHHHHHHHHHHhhc--------ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123          296 -------AF---RSGTALTQSHAVGAIRNIAA--------VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       296 -------ll---~~~~~~~~~~a~~aL~nLs~--------~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La  357 (579)
                             ..   .+.+.+.....+..+..+..        .++.+..+  ...++.++......+.++...++.....++
T Consensus       295 ~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~  372 (1049)
T 3m1i_C          295 VTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLV  372 (1049)
T ss_dssp             TTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                   11   12233344444444433321        11112221  134566666666677888888888877776


Q ss_pred             c----CCh---hhHHHHHhcCcHHHHHHhhccCCC-----------------Ch---HHHHHHHHHHHHcccchhHHHHH
Q 047123          358 A----SGE---YFRLLIIQERGLQRLMHLIQDSTS-----------------SI---VTVENALLAISSLSLSDSAARIL  410 (579)
Q Consensus       358 ~----~~~---~~r~~l~~~g~i~~Lv~ll~~~~~-----------------~~---~~~~~A~~aL~~L~~~~~~~~l~  410 (579)
                      .    ...   ..+..+  ...++.++..+....+                 +.   ..+..+..+|..++... ...++
T Consensus       373 ~~l~~~~~~~~~~~~~l--~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l  449 (1049)
T 3m1i_C          373 ADLFYEPLKKHIYEEIC--SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTE  449 (1049)
T ss_dssp             HHHHHSTTCGGGGHHHH--HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHH
T ss_pred             HHHHhchhHHHHHHHHH--HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHH
Confidence            5    111   111111  1223444443321100                 00   12334556666666331 11122


Q ss_pred             hhcCcHHHHHHHHHhc--CCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCC----CCHhHHHHHHHHHHH
Q 047123          411 SSTTSFIIQLGEFIKR--GNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECP----KPVGLQEAATDAVLS  481 (579)
Q Consensus       411 ~~~~g~i~~L~~lL~~--~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~----~~~~v~~~a~~aL~~  481 (579)
                      ..   +.+.+-..+.+  .+...++.++.+++.++  ......+.+... ++.|..+.+..    .++.++..++.+++.
T Consensus       450 ~~---v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr  526 (1049)
T 3m1i_C          450 EI---MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ  526 (1049)
T ss_dssp             HH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence            21   33334444442  45677889999999998  222222333333 66666654211    234445467788887


Q ss_pred             hhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123          482 LLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       482 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~  527 (579)
                      ++.-......+.  ...++.+++.|.+.++. ++..|+.++.+|+.
T Consensus       527 y~~~~~~~~~~l--~~vl~~ll~~l~~~~~~-V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          527 YPRFLKAHWNFL--RTVILKLFEFMHETHEG-VQDMACDTFIKIVQ  569 (1049)
T ss_dssp             CHHHHHHCHHHH--HHHHHHHHHHTTSSCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHH--HHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Confidence            764322223333  34567788888876666 88889999999986

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.49  E-value=9.1  Score=44.18  Aligned_cols=295  Identities=13%  Similarity=0.121  Sum_probs=156.3

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccC-hhh----HHHHHh--
Q 047123          174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSAN-DES----RKIVFE--  245 (579)
Q Consensus       174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~-~~~----~~~i~~--  245 (579)
                      ++.+.+..++.++.....--+  ...+.+...++.+.+ ++.   ++.++..|+.+|..+.... +..    ...+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            467888999999988765333  223455677777774 443   6899999999999888621 111    111111  


Q ss_pred             cCCHHHHHH-----------HH---ccCCHHHHHHHHHHHHHhcC--------CCccHHHHHhcCcHHHHHHHhcCCCHH
Q 047123          246 EGGLGPLLR-----------IL---ETGSMPLKEKAAIGVEAITT--------DPENAWAISAYGGVSVLIEAFRSGTAL  303 (579)
Q Consensus       246 ~g~l~~Lv~-----------lL---~~~~~~v~~~aa~~L~~Ls~--------~~~~~~~i~~~g~i~~Lv~ll~~~~~~  303 (579)
                      .+.+..+..           ..   .+.+.+.....+..+..+..        .++....+  ...++.++......+..
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~  359 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE  359 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence            122222211           11   11234444455555544331        11111111  23566666666677777


Q ss_pred             HHHHHHHHHHHhhc----Chhh----HHHHHHcCCHHHHHHHhcCC-------------------CH---HHHHHHHHHH
Q 047123          304 TQSHAVGAIRNIAA----VEDI----KAALAEEGAVPVLVQSLTSS-------------------SN---LAQENAADCI  353 (579)
Q Consensus       304 ~~~~a~~aL~nLs~----~~~~----~~~l~~~g~v~~Lv~lL~~~-------------------~~---~v~~~a~~~L  353 (579)
                      +...++.....++.    .+..    +..+.  ..++.++..+..+                   +.   ..+..+..+|
T Consensus       360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~--~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH--HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            77777766666654    2211    11111  1344444444211                   11   2344556666


Q ss_pred             HHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHHHHHHHHHhc----
Q 047123          354 ATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFIIQLGEFIKR----  426 (579)
Q Consensus       354 ~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i~~L~~lL~~----  426 (579)
                      ..++.-.+.   .+. .-..+.+-+.+.....+-..++.++.++..++..  .. ...++.   .+++.|..+...    
T Consensus       438 ~~l~~~~~~---~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~---~v~~~l~~l~~~~~~~  510 (1049)
T 3m1i_C          438 VYLTHLNVI---DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV---TVIKDLLDLTVKKRGK  510 (1049)
T ss_dssp             HHHHHHCHH---HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHHHHTTSSCSH
T ss_pred             HHHHccCHH---HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH---HHHHHHHHHHhhhccc
Confidence            666642221   110 1112333334433222347899999999999875  22 122233   255555554332    


Q ss_pred             -CCHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          427 -GNVLLQQVSSSLLGNLSIS-DGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       427 -~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                       .++.++..+++++...+.. ....+.+...++.|+..+ .+.+..|+..|+.++.+++..
T Consensus       511 ~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l-~~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          511 DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence             2334444577788777621 111223333388888888 666899999999999999974

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.44  E-value=5.2  Score=41.14  Aligned_cols=175  Identities=11%  Similarity=0.082  Sum_probs=113.4

Q ss_pred             cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHH
Q 047123          258 TGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQ  336 (579)
Q Consensus       258 ~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~  336 (579)
                      .++...+.-|+..+.+.-. .|+...     .++..++.+|.+++..+|..|+..|-.+|.+ +....     ++.+|++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence            3578899999999988774 555443     2569999999999999999999999999988 44433     4578999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhc
Q 047123          337 SLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSST  413 (579)
Q Consensus       337 lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~  413 (579)
                      +|..+++.-...+-.+|..+-..++.        +.+..+...+..+.  +.+|+.+...|..=...   +....-++. 
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~--e~~Rer~lkFi~~kl~~l~~~~l~~E~E~-  176 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGE--DIVRERAIKFLSTKLKTLPDEVLTKEVEE-  176 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHH-
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccc--hHHHHHHHHHHHHHHhhcchhhccHHHHH-
Confidence            99988887677777777776665543        34555555555554  37888877777543332   111122222 


Q ss_pred             CcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 047123          414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC  455 (579)
Q Consensus       414 ~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~  455 (579)
                       -++..+.+.|+.-+.+--.....+|..+.  .+...++.+.+.
T Consensus       177 -~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~i  219 (507)
T 3u0r_A          177 -LILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVEL  219 (507)
T ss_dssp             -HHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHH
T ss_pred             -HHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHH
Confidence             24445566665555544344445555554  455555555444

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.35  E-value=4.3  Score=39.78  Aligned_cols=215  Identities=11%  Similarity=0.067  Sum_probs=151.8

Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c----cHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-E----NAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~----~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      +...+.+..|+..|..-+-+.+..++.+..++.... .    ...-+.. ..++..|+.--  +++++--.+-..|+...
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHH
Confidence            344688889999998889999999999888887432 1    2223332 22444444433  34455667777788888


Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHHHH
Q 047123          317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      .++.....+...+.+-.+.+++..++=++...|..++..+-............   +......-+++.+++.  -.+..+
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY--VTkRQS  229 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS  229 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc--hhHHHH
Confidence            89998888888888889999999999999999999999887655443334443   2345666778888776  899999


Q ss_pred             HHHHHHcccc-hhHHHHHhh--cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHHHH
Q 047123          394 LLAISSLSLS-DSAARILSS--TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI----SDGNKRAVASCMGSLIK  461 (579)
Q Consensus       394 ~~aL~~L~~~-~~~~~l~~~--~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~----~~~~~~~i~~~v~~Lv~  461 (579)
                      +..|+.|-.. .+...+...  ++.-+..+..+|++.+..+|.+|-.+..-...    +++....+...=+.|++
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~  304 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE  304 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence            9999999876 333333221  23557889999999999999999999888773    34555555554333333

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=93.82  E-value=11  Score=43.00  Aligned_cols=285  Identities=11%  Similarity=0.011  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhh----HHHHHhcCC
Q 047123          175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDES----RKIVFEEGG  248 (579)
Q Consensus       175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~----~~~i~~~g~  248 (579)
                      +++.|.+|-..|..+-+.          .++......+|..++  ++.+|--|+..|.+....-+..    ....+....
T Consensus        21 d~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l   90 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV   90 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence            788899998888776432          345666777776222  6899999998888554312222    223333333


Q ss_pred             HHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhc---C---
Q 047123          249 LGPLLRILE-TGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAA---V---  318 (579)
Q Consensus       249 l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~---~---  318 (579)
                      +..+.+.-. .++..++.+.+.++..+...  ++     .-.+.++.|+.+++.++. ......+.+|..++.   +   
T Consensus        91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~  165 (980)
T 3ibv_A           91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV  165 (980)
T ss_dssp             HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence            444433110 23567899999999988732  21     124567778887776443 333444444443321   0   


Q ss_pred             ---h-------hhHHHHHHcC---CHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc
Q 047123          319 ---E-------DIKAALAEEG---AVPVLVQSL----TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ  381 (579)
Q Consensus       319 ---~-------~~~~~l~~~g---~v~~Lv~lL----~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~  381 (579)
                         .       +.++.+.+..   +++....++    .+.++.++..++.||......-+  -..+.+...++.+.+++.
T Consensus       166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~  243 (980)
T 3ibv_A          166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ  243 (980)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred             ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence               0       0123333221   123333333    34678899999999999877533  245566778888888876


Q ss_pred             cCCCChHHHHHHHHHHHHcccc----hhHHHHHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhc-------CC---
Q 047123          382 DSTSSIVTVENALLAISSLSLS----DSAARILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLS-------IS---  445 (579)
Q Consensus       382 ~~~~~~~~~~~A~~aL~~L~~~----~~~~~l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~-------~~---  445 (579)
                      .    +..+..|+.+|..+...    +....++..  =.+...+..+.  ..+.+..+.-++.+..++       ..   
T Consensus       244 ~----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~  317 (980)
T 3ibv_A          244 I----EELRCAACETMTEIVNKKMKPLEKLNLLNI--LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSE  317 (980)
T ss_dssp             S----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred             C----hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence            5    48999999999998876    222223322  11111121122  456666554444444332       11   


Q ss_pred             --hhhHHHHHHH----HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123          446 --DGNKRAVASC----MGSLIKLMECPKPVGLQEAATDAVLSLL  483 (579)
Q Consensus       446 --~~~~~~i~~~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~  483 (579)
                        ++.+......    ++.++..+ ..++.++-..+...+..+.
T Consensus       318 ~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw~~~l  360 (980)
T 3ibv_A          318 LSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFLSDLL  360 (980)
T ss_dssp             -CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHH
Confidence              1222211122    77777777 4455666665555555443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=93.60  E-value=13  Score=42.73  Aligned_cols=294  Identities=13%  Similarity=0.122  Sum_probs=155.0

Q ss_pred             cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH-HhhccCCCHHHHHHHHHHHHHhhccC---h--hhHHHHHh-
Q 047123          173 IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI-SLLDFHHQSSIREQAVLALSIIVSAN---D--ESRKIVFE-  245 (579)
Q Consensus       173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~~---~--~~~~~i~~-  245 (579)
                      .++++....++.++....+-  -....+...+.++.+. .+|.   ++..++.|+.+|..+....   +  .+...+.. 
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l  280 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence            35667778889999888753  2345667788999999 8887   5789999999999987621   1  12222210 


Q ss_pred             -cCCHHHH-----------HHHHc---cCCHHHHHHHHHHHHHhcC--------CCccHHHHHhcCcHHHHHHHhcCCCH
Q 047123          246 -EGGLGPL-----------LRILE---TGSMPLKEKAAIGVEAITT--------DPENAWAISAYGGVSVLIEAFRSGTA  302 (579)
Q Consensus       246 -~g~l~~L-----------v~lL~---~~~~~v~~~aa~~L~~Ls~--------~~~~~~~i~~~g~i~~Lv~ll~~~~~  302 (579)
                       .+.+..+           -..+.   ..+.+.....++.+..+..        +++.+..+  ..++..|+.....++.
T Consensus       281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l--~~~l~~Ll~~~~~~d~  358 (1023)
T 4hat_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEER  358 (1023)
T ss_dssp             HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH--HHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHHhhCCCcH
Confidence             0111111           11121   2245666666666655542        11111111  1123455555455666


Q ss_pred             HHHHHHHHHHHHhhc--C-hhhHHHHH---HcCCHHHHHHHhcCCC--------------------H-HHHH-HHHHHHH
Q 047123          303 LTQSHAVGAIRNIAA--V-EDIKAALA---EEGAVPVLVQSLTSSS--------------------N-LAQE-NAADCIA  354 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~--~-~~~~~~l~---~~g~v~~Lv~lL~~~~--------------------~-~v~~-~a~~~L~  354 (579)
                      ++...++..=..++.  . ++.+....   -...++.+++-+..+.                    + .... ..-.+|.
T Consensus       359 ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~  438 (1023)
T 4hat_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHH
Confidence            665555543233332  1 10010000   0113344444332211                    0 0111 0113333


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHHHHHHHHHhc-
Q 047123          355 TLAASGEYFRLLIIQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFIIQLGEFIKR-  426 (579)
Q Consensus       355 ~La~~~~~~r~~l~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i~~L~~lL~~-  426 (579)
                      .++.-..        ...++.++.    .+...+.+=..++.++.+++.++.+  +. ...++..   +++.|+.+++. 
T Consensus       439 ~l~~l~~--------~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~---vi~~Ll~l~~~~  507 (1023)
T 4hat_C          439 YLTHLNV--------IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT---VIKDLLDLCVKK  507 (1023)
T ss_dssp             HHHHHCH--------HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred             HHhccCH--------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH---HHHHHHHhhhcc
Confidence            3322111        122333333    3333222237899999999999987  22 3445554   78888888864 


Q ss_pred             ----CCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          427 ----GNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       427 ----~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                          ....++..+++++++.+..-.....+.+. +..|+..+ ..+++.++.+|+.++.+|+..
T Consensus       508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l-~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Confidence                22234456667777776211111223343 78888888 666789999999999999863

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.52  E-value=3.7  Score=39.04  Aligned_cols=173  Identities=13%  Similarity=0.066  Sum_probs=109.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc--cCCCChHHHHHHHHHHHHcccc--h----
Q 047123          333 VLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ--DSTSSIVTVENALLAISSLSLS--D----  404 (579)
Q Consensus       333 ~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~--~~~~~~~~~~~A~~aL~~L~~~--~----  404 (579)
                      .+...|.+.+..-+..++..|......++.   .+.  ..++.++.++.  -.+.+..+...++.+|..+...  +    
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            344455555666667777777665543321   111  12333344321  1122346777777777766443  1    


Q ss_pred             hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123          405 SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSL  482 (579)
Q Consensus       405 ~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L  482 (579)
                      ....-. .  -++|.|++=+.+....++..+..++..+..      .....  ++.++.-+ .+++...|+.++..+.++
T Consensus       125 ~~~~ea-~--~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          125 MSQEEV-S--AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCHHHH-H--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred             chHHHH-H--HHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            111111 2  367888888888888899988888877751      01111  67788888 889999999999999999


Q ss_pred             hcCCcchhHHHhhcccH---HHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          483 LTVRSNRKELVRDEKSV---MRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      ...+.-.     ...++   +.+.+++.+++.. ++..|+.++..+-
T Consensus       195 i~~~G~~-----~~~~l~~~~~ia~ll~D~d~~-VR~aAl~~lve~y  235 (266)
T 2of3_A          195 ITNAGIS-----PLKSLSVEKTVAPFVGDKDVN-VRNAAINVLVACF  235 (266)
T ss_dssp             HHHHCSG-----GGGGGCHHHHHGGGGGCSSHH-HHHHHHHHHHHHH
T ss_pred             HHhcCCC-----ccccccchHHHHHHHcCCCHH-HHHHHHHHHHHHH
Confidence            7543222     14578   9999999998888 8889888776554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.93  E-value=0.046  Score=51.84  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=40.4

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123          167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE  246 (579)
Q Consensus       167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~  246 (579)
                      +..++++.++.+|..++..|                  ..+.|..+++ ++++.+|..++..+   .             
T Consensus        79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~-D~d~~VR~~aA~~l---~-------------  123 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMF-DEDREVRITVADRL---P-------------  123 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTT-CSCHHHHHHHHHHS---C-------------
T ss_pred             HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHc-CCCHHHHHHHHHhC---C-------------
Confidence            34445566666666666432                  1245667777 88888888876632   1             


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHH
Q 047123          247 GGLGPLLRILETGSMPLKEKAAI  269 (579)
Q Consensus       247 g~l~~Lv~lL~~~~~~v~~~aa~  269 (579)
                        .+.|..++++++..|+..++.
T Consensus       124 --~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          124 --LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             --TGGGGGGTTCSSHHHHHHHHH
T ss_pred             --HHHHHHHHcCCCHHHHHHHHH
Confidence              123455566777888877776

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.57  E-value=9.1  Score=44.24  Aligned_cols=185  Identities=14%  Similarity=0.112  Sum_probs=115.0

Q ss_pred             HHHHHHHHcc----CCHHHHHHHHHHHHHhc----CC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          249 LGPLLRILET----GSMPLKEKAAIGVEAIT----TD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       249 l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls----~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                      +..+..++++    .++.++..+.-+++.|.    .+ +.|...++ ......|.+.+..++..-+..++.+|.|+... 
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence            4445555554    36677777777777765    22 22211111 11233444555677777888899999997652 


Q ss_pred             hhHHHHHHcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123          320 DIKAALAEEGAVPVLVQSLTS-------SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVEN  392 (579)
Q Consensus       320 ~~~~~l~~~g~v~~Lv~lL~~-------~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~  392 (579)
                               ..++.+..++..       ....++..|+.+|.+++...+.        .+-+.++++..+.....++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHHHHH
Confidence                     246666677632       2357889999999999875542        1245667777666555689998


Q ss_pred             HHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhc
Q 047123          393 ALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLM  463 (579)
Q Consensus       393 A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL  463 (579)
                      |+..|....-.        .  ..+..+...+.. .+..|.......|.+++  .+| ..+.+.......++++
T Consensus       534 A~~~Lm~t~P~--------~--~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P-~~~~la~~~~~a~~~l  596 (1056)
T 1lsh_A          534 SCIVFFESKPS--------V--ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP-EFRDVAAACSVAIKML  596 (1056)
T ss_dssp             HHHHHHHTCCC--------H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG-GGHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCcC--------H--HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHh
Confidence            88888754322        1  456666777765 57788888889999999  333 3344444444445555

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.56  E-value=7.5  Score=44.92  Aligned_cols=167  Identities=10%  Similarity=0.012  Sum_probs=106.8

Q ss_pred             cHHHHHHHhcC----CCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHH----HHHhcCCCHHHHHHHHHHHHHH
Q 047123          289 GVSVLIEAFRS----GTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVL----VQSLTSSSNLAQENAADCIATL  356 (579)
Q Consensus       289 ~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~L----v~lL~~~~~~v~~~a~~~L~~L  356 (579)
                      .+..+..++.+    .++.++..+..++.+|..    +...+    ....++.+    .+.+..++..-+..++.+|+|+
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            34667777765    355677777777766632    21110    11123333    3444667777888899999998


Q ss_pred             hcCChhhHHHHHhcCcHHHHHHhhccC-----CCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHH--hcCC
Q 047123          357 AASGEYFRLLIIQERGLQRLMHLIQDS-----TSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFI--KRGN  428 (579)
Q Consensus       357 a~~~~~~r~~l~~~g~i~~Lv~ll~~~-----~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL--~~~~  428 (579)
                      ..           ...++.|..++...     +....++..|+.+|++++.. +.         -+-+.++.+.  ...+
T Consensus       468 g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---------~v~~il~~i~~n~~e~  527 (1056)
T 1lsh_A          468 GQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---------KVQEIVLPIFLNVAIK  527 (1056)
T ss_dssp             TC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---------HHHHHHHHHHHCTTSC
T ss_pred             CC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---------HHHHHHHHHhcCCCCC
Confidence            65           23477777776531     22236778899999988754 11         2344566676  4568


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123          429 VLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR  486 (579)
Q Consensus       429 ~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~  486 (579)
                      +++|..|...|..-.-+...       +..+...+...++..|.-.....|.+++...
T Consensus       528 ~EvRiaA~~~Lm~t~P~~~~-------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          528 SELRIRSCIVFFESKPSVAL-------VSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHHHTCCCHHH-------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHCcCHHH-------HHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            89999998888754422111       5566666656678899999999999998764

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.17  E-value=7.4  Score=36.17  Aligned_cols=165  Identities=17%  Similarity=0.189  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc---CC-------CHHHHHHHHHHHHHhhccChhhHHHHHh-cCC
Q 047123          181 KALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF---HH-------QSSIREQAVLALSIIVSANDESRKIVFE-EGG  248 (579)
Q Consensus       181 ~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~---~~-------~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~  248 (579)
                      +-+..|.-..+.+ ....+.+ ..+|+..|+.+|..   .+       +...+..++.||..+.. +......+.. .++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence            3445554444433 3445555 46788888887751   11       35667789999999988 7766666654 568


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--c-HHHHH----------hcCcHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 047123          249 LGPLLRILETGSMPLKEKAAIGVEAITTDPE--N-AWAIS----------AYGGVSVLIEAFRS-GTALTQSHAVGAIRN  314 (579)
Q Consensus       249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n  314 (579)
                      +..++..|.+.++.++..+...|..++..++  . ...+.          +..-...+++.+.+ .+.+.+..+...+-.
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~  177 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  177 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999886443  3 33222          12244557776664 344555554444444


Q ss_pred             hhcChh-------hHHHHHHcCCHHHHHHHhcCCCHHHHH
Q 047123          315 IAAVED-------IKAALAEEGAVPVLVQSLTSSSNLAQE  347 (579)
Q Consensus       315 Ls~~~~-------~~~~l~~~g~v~~Lv~lL~~~~~~v~~  347 (579)
                      +...++       .|..+...|..+.+-.+=..+++++..
T Consensus       178 li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          178 LITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  217 (233)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence            433322       244555666655554443444554433

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.79  E-value=2.6  Score=40.63  Aligned_cols=145  Identities=12%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             HHHHHHHhccC------CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh--ccCCCHHHHHHHHHHHHHhhcc
Q 047123          164 IRDIFTRLQIG------GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL--DFHHQSSIREQAVLALSIIVSA  235 (579)
Q Consensus       164 v~~Lv~~L~~~------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL--~~~~~~~~~~~A~~aL~~La~~  235 (579)
                      ......++++|      +.+....|+..|.+++- +.++.-.|++.+ ...|-.++  . ...+.+++.|+++|+.--++
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~-~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNE-NLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCT-TSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhc-cCChhHHHHHHHHHHHHHcc
Confidence            34555566666      45566789999999985 455555555432 34444433  3 55678999999999988777


Q ss_pred             ChhhHHHHHhc--CCHHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHH
Q 047123          236 NDESRKIVFEE--GGLGPLLRILET-------GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALT  304 (579)
Q Consensus       236 ~~~~~~~i~~~--g~l~~Lv~lL~~-------~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~  304 (579)
                      ||...+.+...  ..+..++.-|..       ....++..-..+|..|..++.   .| ...++..|.+++...  ++.+
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHH
Confidence            88888777653  455555555543       245677778888999997752   22 245668888887776  8888


Q ss_pred             HHHHHHHHHHh
Q 047123          305 QSHAVGAIRNI  315 (579)
Q Consensus       305 ~~~a~~aL~nL  315 (579)
                      +..++..+..+
T Consensus       177 k~Kvl~li~d~  187 (315)
T 3qml_C          177 QIKVLELISKI  187 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888777554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.52  E-value=8.2  Score=35.80  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=94.2

Q ss_pred             HHHH-HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhc-cChhhHHH
Q 047123          166 DIFT-RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVS-ANDESRKI  242 (579)
Q Consensus       166 ~Lv~-~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~-~~~~~~~~  242 (579)
                      .+.. +.++...++|..|+..|+.+ ...         ...++.+.. +-. +.+-.||+.++.++..++. .+++    
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~-D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSK-DNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGG-CSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHHHhcCHH----
Confidence            4444 44566788999999988777 322         224666666 555 7789999999999998874 2443    


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED  320 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~  320 (579)
                          ..++.+.....++++.+|+.|...+.--+..+..   ... .-+++.|-.+..+++.-+|....+.|+.++. +|+
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence                2578889999999999999998876532211100   000 1134555556667888999999999999998 555


Q ss_pred             hHHHHH
Q 047123          321 IKAALA  326 (579)
Q Consensus       321 ~~~~l~  326 (579)
                      -...++
T Consensus       212 ~V~~~~  217 (240)
T 3l9t_A          212 LVKIEL  217 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.41  E-value=9  Score=38.58  Aligned_cols=147  Identities=16%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             HHHHHhhcCcHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhH
Q 047123          406 AARILSSTTSFIIQLGEFIKR-----------GNVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGL  471 (579)
Q Consensus       406 ~~~l~~~~~g~i~~L~~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v  471 (579)
                      +..+. .  +++..|+.+|..           .+...+..+..+|..+..+......+...   +..|...+ .+.+..+
T Consensus       103 V~~F~-~--~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~  178 (383)
T 3eg5_B          103 VQTFG-A--EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM  178 (383)
T ss_dssp             HHHHH-H--HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHHH
T ss_pred             HHHHH-H--ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchHH
Confidence            44554 4  677888888741           23477888899999998777777766665   99999999 8889999


Q ss_pred             HHHHHHHHHHhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC-Ch----hHH
Q 047123          472 QEAATDAVLSLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG-SN----GCR  534 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~-~~----~~r  534 (579)
                      +..+.+.|..++..+.  + ...++         .+..-...+++.|+.......+.+.+..+..+..+. +.    ..|
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR  258 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  258 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999887654  2 33222         223346778888886432224555556566666554 22    356


Q ss_pred             HHHHHcCchHHHHhhhccCCch
Q 047123          535 KRLVAAGAYQHLQKLAETEVPG  556 (579)
Q Consensus       535 ~~i~~~g~~~~L~~L~~~~~~~  556 (579)
                      ..+...|..+.+.+|-..++++
T Consensus       259 ~ef~~~Gl~~il~~lr~~~~~~  280 (383)
T 3eg5_B          259 SELMRLGLHQVLQELREIENED  280 (383)
T ss_dssp             HHHHHTTHHHHHHHHTTSCCHH
T ss_pred             HHHHHCChHHHHHHHhcCCChh
Confidence            7777899999998876665554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.40  E-value=6.8  Score=36.45  Aligned_cols=147  Identities=17%  Similarity=0.118  Sum_probs=100.5

Q ss_pred             cHHHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          415 SFIIQLGEFIKR----G-------NVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       415 g~i~~L~~lL~~----~-------~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      +++..|+.+|..    +       +...+..+..+|..+..+......+...   +..|...+ ++++..++..+.+.|.
T Consensus        43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHH
Confidence            667777777642    1       3466788889999998777767766665   89999999 8889999999999999


Q ss_pred             HhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-----hhHHHHHHHcCch
Q 047123          481 SLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-----NGCRKRLVAAGAY  543 (579)
Q Consensus       481 ~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-----~~~r~~i~~~g~~  543 (579)
                      .++..+.  . ...+.         .+..-...+++.+...+....+.+.+..+..+..+.+     ...|..+...|..
T Consensus       122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  201 (233)
T 2f31_A          122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  201 (233)
T ss_dssp             HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            8887654  3 33222         2223456688888754322245555555666666553     2357778899999


Q ss_pred             HHHHhhhccCCchHHHHHH
Q 047123          544 QHLQKLAETEVPGAKKVLQ  562 (579)
Q Consensus       544 ~~L~~L~~~~~~~ak~~~~  562 (579)
                      +.+.+|-..++++...=++
T Consensus       202 ~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          202 QVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHH
Confidence            9999998777766554443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=90.34  E-value=30  Score=39.83  Aligned_cols=298  Identities=12%  Similarity=0.100  Sum_probs=148.6

Q ss_pred             cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH-HhhccCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHh--cCC
Q 047123          173 IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI-SLLDFHHQSSIREQAVLALSIIVSA-NDESRKIVFE--EGG  248 (579)
Q Consensus       173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~-~~~~~~~i~~--~g~  248 (579)
                      .++++....++.+|..+.+=-  ....+.+.+.++.|+ .+|.   ++..+..|+.+|..+... .+++...+..  .++
T Consensus       218 ~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~  292 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT  292 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            457777778888888886532  245677888888884 6665   678999999999998762 2233333321  122


Q ss_pred             HHHHHHHHcc----------C---CHHHHHHHHHHHHHhcCCCccHHHHHhc--------CcHHHHHHHhcCCCHHHHHH
Q 047123          249 LGPLLRILET----------G---SMPLKEKAAIGVEAITTDPENAWAISAY--------GGVSVLIEAFRSGTALTQSH  307 (579)
Q Consensus       249 l~~Lv~lL~~----------~---~~~v~~~aa~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~ll~~~~~~~~~~  307 (579)
                      +..+-.++..          +   +.+.-..-++.+..+....  ...+...        .++..|+.+...++.++.+.
T Consensus       293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~--~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~ki  370 (1073)
T 3gjx_A          293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH--GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKI  370 (1073)
T ss_dssp             HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH--HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            2222222211          1   2344444555555444211  1112111        13344555555667666655


Q ss_pred             HHHHHHHhhc-----Ch-----------------hhHHHHHH---cCCHHHHHHHhcCC--------------------C
Q 047123          308 AVGAIRNIAA-----VE-----------------DIKAALAE---EGAVPVLVQSLTSS--------------------S  342 (579)
Q Consensus       308 a~~aL~nLs~-----~~-----------------~~~~~l~~---~g~v~~Lv~lL~~~--------------------~  342 (579)
                      +...=..+..     .+                 ..+..+..   ...+..++.-+..+                    .
T Consensus       371 tf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~  450 (1073)
T 3gjx_A          371 CLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDT  450 (1073)
T ss_dssp             HHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhc
Confidence            5543222221     00                 01111110   11122222222211                    1


Q ss_pred             HH--HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHH
Q 047123          343 NL--AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFI  417 (579)
Q Consensus       343 ~~--v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i  417 (579)
                      ..  +....-.+|..++.-+......    -..+.+-+.+.....+-...+.++++++.++..  +. -+.++..   ++
T Consensus       451 ~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~---vi  523 (1073)
T 3gjx_A          451 DSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT---VI  523 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HH
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH---HH
Confidence            11  1122223333333211110000    012233333333333347889999999999866  22 3344443   77


Q ss_pred             HHHHHHHhcCC-HH----HHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          418 IQLGEFIKRGN-VL----LQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       418 ~~L~~lL~~~~-~~----v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      +.|+.+.+... .+    ++.....+++..+..-.....+.+. +..|++.+ ...+..++++|+.++..++..
T Consensus       524 ~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          524 KDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM-HETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH
Confidence            77877776542 12    2222234555544211122334444 88888888 677889999999999999853

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.89  E-value=8.7  Score=38.72  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=96.3

Q ss_pred             HHHhcCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHH
Q 047123          283 AISAYGGVSVLIEAFRS-----------GTALTQSHAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAA  350 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~  350 (579)
                      .|. .+|+..|+.++..           .+...+..++.||+.+..+......+. ....+..++..+.+..+.++..++
T Consensus       105 ~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al  183 (383)
T 3eg5_B          105 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA  183 (383)
T ss_dssp             HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred             HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence            444 5677888887751           244778889999999988777666665 566889999999999999999999


Q ss_pred             HHHHHHhcCCh-hh-HHHH----------HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--------hhHHHHH
Q 047123          351 DCIATLAASGE-YF-RLLI----------IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--------DSAARIL  410 (579)
Q Consensus       351 ~~L~~La~~~~-~~-r~~l----------~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~  410 (579)
                      ..|..+|..+. .. ...+          .+..-...++..++.... .+.+..+...|..+...        ..+..+.
T Consensus       184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~-~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~  262 (383)
T 3eg5_B          184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELM  262 (383)
T ss_dssp             HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCc-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999997553 21 2222          223345777887776432 46666666666666664        2344555


Q ss_pred             hhcCcHHHHHHHHHhc-CCHHHH
Q 047123          411 SSTTSFIIQLGEFIKR-GNVLLQ  432 (579)
Q Consensus       411 ~~~~g~i~~L~~lL~~-~~~~v~  432 (579)
                      ..  |..+.+-. ++. .++++.
T Consensus       263 ~~--Gl~~il~~-lr~~~~~~L~  282 (383)
T 3eg5_B          263 RL--GLHQVLQE-LREIENEDMK  282 (383)
T ss_dssp             HT--THHHHHHH-HTTSCCHHHH
T ss_pred             HC--ChHHHHHH-HhcCCChhHH
Confidence            66  55555544 443 344433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=88.97  E-value=0.24  Score=46.86  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=30.0

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHH
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVL  227 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~  227 (579)
                      .+..+++..++++|..++..+      .            .+.|..+++ ++++.+|..++.
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~l------~------------~~~L~~L~~-D~d~~VR~~aA~  144 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADRL------P------------LEQLEQMAA-DRDYLVRAYVVQ  144 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS------C------------TGGGGGGTT-CSSHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHhC------C------------HHHHHHHHc-CCCHHHHHHHHH
Confidence            456667788899988887753      1            123556677 888888888776

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=88.37  E-value=9.1  Score=37.51  Aligned_cols=158  Identities=8%  Similarity=0.075  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHH
Q 047123          267 AAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLA  345 (579)
Q Consensus       267 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v  345 (579)
                      +-..|.-|-.+...-.-++...|+..+...++..+.++....+..|...+........- -...+|.++..+ ..+++++
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdv  341 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEV  341 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcce
Confidence            33344444466677788999999999999999999999999999998877643321110 123567777776 4678899


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC-----ChHHHHHHHHHHHHccc------------------
Q 047123          346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS-----SIVTVENALLAISSLSL------------------  402 (579)
Q Consensus       346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~-----~~~~~~~A~~aL~~L~~------------------  402 (579)
                      .....+.|.|...+....++..+..|++..|...+....+     ...-+..||+.+.|.-.                  
T Consensus       342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~  421 (619)
T 3c2g_A          342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETK  421 (619)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCC
T ss_pred             EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccc
Confidence            9999999999998888889999999999988887644331     12334455555544322                  


Q ss_pred             --c----hhHHHHHhhcCcHHHHHHHHHhcC
Q 047123          403 --S----DSAARILSSTTSFIIQLGEFIKRG  427 (579)
Q Consensus       403 --~----~~~~~l~~~~~g~i~~L~~lL~~~  427 (579)
                        +    ..+.++++.  .++.+|...|+..
T Consensus       422 ~~G~~EqQQVckFIE~--d~LKrLMtCLS~e  450 (619)
T 3c2g_A          422 TAGPNEKQQVCKFIEI--DILKKLMSCLSCE  450 (619)
T ss_dssp             CCCHHHHHHHHGGGSH--HHHHHHHHHHHCC
T ss_pred             cCChHHHHHHHHHHHH--HHHHHHHHHhccc
Confidence              1    123345565  6777777777654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=88.35  E-value=8.2  Score=35.79  Aligned_cols=135  Identities=10%  Similarity=0.013  Sum_probs=92.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-hhccCCCChHHHHHHHHHHHHccc-c-hhHHH
Q 047123          332 PVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH-LIQDSTSSIVTVENALLAISSLSL-S-DSAAR  408 (579)
Q Consensus       332 ~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~-ll~~~~~~~~~~~~A~~aL~~L~~-~-~~~~~  408 (579)
                      +....+..+....+|..|+..|..+ ...         ...++.+.. +..+.+-  .+++.++.++..++. . ..   
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~W--rVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNW--RVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCH--HHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHhcCHH---
Confidence            3334455777789999999988877 322         223555555 4444555  899999999998885 2 21   


Q ss_pred             HHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123          409 ILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN  488 (579)
Q Consensus       409 l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~  488 (579)
                            ..++.+.....+.+..++..|...+.--+..+..+......++.|-.+. .+++.-||...+.+|..++..++.
T Consensus       139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~-~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLK-EDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhhCHH
Confidence                  2567788899999999999998886543311211111111155555566 788999999999999999988765

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.31  E-value=20  Score=35.98  Aligned_cols=165  Identities=16%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             HHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc---CC-------CHHHHHHHHHHHHHhhccChhhHHHHH-hcCCH
Q 047123          182 ALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF---HH-------QSSIREQAVLALSIIVSANDESRKIVF-EEGGL  249 (579)
Q Consensus       182 Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~---~~-------~~~~~~~A~~aL~~La~~~~~~~~~i~-~~g~l  249 (579)
                      .+..|.-..+.+ ...+..+. .+|+..|+..|..   .+       +...+..++.||..+.. +......+. ..+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence            445554444433 34455554 5778888887741   11       35677889999999988 666665555 45789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcCCCc--c-HHHHH----------hcCcHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 047123          250 GPLLRILETGSMPLKEKAAIGVEAITTDPE--N-AWAIS----------AYGGVSVLIEAFRS-GTALTQSHAVGAIRNI  315 (579)
Q Consensus       250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  315 (579)
                      ..++..|.+.++.++..+...|..+|..++  . ...+.          +..-...+++.+.+ .+.+.+..+...+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998886443  2 22221          22244567777764 4445555544444444


Q ss_pred             hcChh-------hHHHHHHcCCHHHHHHHhcCCCHHHHHH
Q 047123          316 AAVED-------IKAALAEEGAVPVLVQSLTSSSNLAQEN  348 (579)
Q Consensus       316 s~~~~-------~~~~l~~~g~v~~Lv~lL~~~~~~v~~~  348 (579)
                      ...++       .|..+...|..+.+-.+=..+++.+...
T Consensus       183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            43322       2555666676666544434455554443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=86.84  E-value=18  Score=36.42  Aligned_cols=143  Identities=17%  Similarity=0.118  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          415 SFIIQLGEFIKR-----------GNVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       415 g~i~~L~~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      +++..|+.+|..           .+...+..+..+|..+..+......+...   +..|...+ ++++..++..+.+.|.
T Consensus        47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHH
Confidence            567777777631           13467788889999998777666666665   89999999 8888999999999998


Q ss_pred             HhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-----hhHHHHHHHcCch
Q 047123          481 SLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-----NGCRKRLVAAGAY  543 (579)
Q Consensus       481 ~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-----~~~r~~i~~~g~~  543 (579)
                      .++..+.  . ...++         .+..-...+|+.+........+.+.+..+..+..+..     ...|..+...|..
T Consensus       126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~  205 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  205 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred             HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            8887654  3 22221         1223445688888754432245555565666665553     2367888899999


Q ss_pred             HHHHhhhccCCchHH
Q 047123          544 QHLQKLAETEVPGAK  558 (579)
Q Consensus       544 ~~L~~L~~~~~~~ak  558 (579)
                      +.+.+|-..+++...
T Consensus       206 ~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          206 QVLQELREIENEDMK  220 (386)
T ss_dssp             HHHHHHTTCCCHHHH
T ss_pred             HHHHHHhccCChhHH
Confidence            999988777766543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=84.18  E-value=71  Score=37.37  Aligned_cols=296  Identities=9%  Similarity=-0.035  Sum_probs=160.8

Q ss_pred             HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhcc----
Q 047123          163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSA----  235 (579)
Q Consensus       163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~----  235 (579)
                      .+..++..+.++  +.+.|.+|-..|..+-...          ++...+.. +...+.++.+|..|+..|.+....    
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            344444444443  6777888888887764321          23444444 332266789999999999877541    


Q ss_pred             -ChhhHHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Q 047123          236 -NDESRKIVFEEGGLGPLLRILE---TGSMPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVG  310 (579)
Q Consensus       236 -~~~~~~~i~~~g~l~~Lv~lL~---~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~  310 (579)
                       .++.+..+ +...+..+...-.   ..+..++...+.++..++... ...    -.+.++.|+.++++ ++...+.+..
T Consensus        82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~  155 (1204)
T 3a6p_A           82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMF  155 (1204)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHH
Confidence             23333333 3333333333211   136789999999999988421 111    24678888888876 4556777888


Q ss_pred             HHHHhhcC-------hhhH-----HHHHHcCCHHHHHHH----hcC-------------------CCHHHHHHHHHHHHH
Q 047123          311 AIRNIAAV-------EDIK-----AALAEEGAVPVLVQS----LTS-------------------SSNLAQENAADCIAT  355 (579)
Q Consensus       311 aL~nLs~~-------~~~~-----~~l~~~g~v~~Lv~l----L~~-------------------~~~~v~~~a~~~L~~  355 (579)
                      +|..++..       ...|     ..+.+.  ++.++.+    +..                   ++..+...++.++.+
T Consensus       156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88777531       1111     122221  3333333    321                   123466667777766


Q ss_pred             HhcCChhhHHHHHhc--CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h--hHHHHHhh-cCcHHHHHHHHHh---
Q 047123          356 LAASGEYFRLLIIQE--RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D--SAARILSS-TTSFIIQLGEFIK---  425 (579)
Q Consensus       356 La~~~~~~r~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~--~~~~l~~~-~~g~i~~L~~lL~---  425 (579)
                      ....-+.  ..+.+.  ..++.+..++..    ++++..|+.+|..+...  .  ....++.. ...++..++..+.   
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~  307 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD  307 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence            5443221  223332  256666666553    36899999999999975  1  11112221 0022445555542   


Q ss_pred             -----cCCHHHHHHHHHHHHHhcCChhhHH------------HHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          426 -----RGNVLLQQVSSSLLGNLSISDGNKR------------AVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       426 -----~~~~~v~~~A~~aL~~L~~~~~~~~------------~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                           ..+.+..+.-+.++..++.  ....            .+.+-++.++++. ...+..+-..++..-..+...
T Consensus       308 ~~~~~e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t-~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          308 GGGLVEKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFT-THPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHH-hCccHHhHHHHHHHHHHHHhc
Confidence                 1124555566666666651  1111            1122277888888 445777777777755556654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.61  E-value=4.7  Score=35.23  Aligned_cols=74  Identities=9%  Similarity=-0.005  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~  234 (579)
                      ...++.+..+|+++++.++..|+..|-.+.+. .+.....|....++..|++++....++.+++.++..|..-+.
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999988888775 455666777889999999999823678999999988887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.001
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-07

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 3e-13
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 23/200 (11%)

Query: 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSM 261
               +  ++ LL       + +  V  +  + +    +   + E+G +  L+++L     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 262 PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321
             + + ++G                 G     +E  R           GA+  +A     
Sbjct: 412 DTQRRTSMG-----------------GTQQQFVEGVRM--EEIVEGCTGALHILARDVHN 452

Query: 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ 381
           +  +     +P+ VQ L S     Q  AA  +  LA   E     I  E     L  L+ 
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLH 511

Query: 382 DSTSSIVTVENALLAISSLS 401
                +     A   +  +S
Sbjct: 512 SRNEGV--ATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 6e-13
 Identities = 53/348 (15%), Positives = 123/348 (35%), Gaps = 29/348 (8%)

Query: 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236
           E   +A+  L +LL D+D                          +  +A + +  +    
Sbjct: 13  ELATRAIPELTKLLNDED------------------------QVVVNKAAVMVHQLSKKE 48

Query: 237 DESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE 295
                I+     +  ++R ++    +      A  +  ++   E   AI   GG+  L++
Sbjct: 49  ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 108

Query: 296 AFRSGTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIA 354
              S       +A+  + N+   ++  K A+   G +  +V  L  ++        DC+ 
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTT 414
            LA   +  +L+I+   G Q L+++++  T     +      +  +    S+ +      
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEA 226

Query: 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEA 474
             +  LG  +   +  L Q     L NLS +   +  +   +G+L++L+       +   
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTC 285

Query: 475 ATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT 522
           A   + +L       K +V     +  L++ +    +  +   P +  
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS 386
               +PV+V+ L   S+     A   +    A        + ++  + RL+ L+  +   
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 387 IVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD 446
                +                I+   T                        L  L+   
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTG----------------------ALHILARDV 450

Query: 447 GNKRAVASCMG--SLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ 504
            N+  +         ++L+  P     + AA   VL  L       E +  E +   L +
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG--VLCELAQDKEAAEAIEAEGATAPLTE 508

Query: 505 MLDPKNEALNKKFPVMVTAAVLG 527
           +L  +NE +         AAVL 
Sbjct: 509 LLHSRNEGV-----ATYAAAVLF 526

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 36/377 (9%), Positives = 98/377 (25%), Gaps = 28/377 (7%)

Query: 209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAA 268
            +  L        +      +      ++ +++ V++ GG+  L+ +L + +  +++ AA
Sbjct: 7   AVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 269 IGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTAL-TQSHAVGAIRNIAAVEDIKAALA 326
             +  +      N        G+   +   R       Q    G + N+++ +++K  L 
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 327 EEGAVPVL---------------VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER 371
            +    +                  S          NA  C+  L+++    + +     
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLL 431
            +  LM  +Q+  ++    + ++               LS      +         N   
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCM------CVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 432 QQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKE 491
                S  G  S                 +         L  +        L  +S +  
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 492 LVRDEKSVMRLMQMLDPKNEALNKKFPV----MVTAAVLGGGSNGCRKRLVAAGAYQHLQ 547
            +      ++ +        +   +        +        S         A    ++ 
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359

Query: 548 KLAETEVPGAKKVLQRL 564
           +          +V   +
Sbjct: 360 RHPLLHRVMGNQVFPEV 376

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 16/242 (6%)

Query: 290 VSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQEN 348
           +   ++   S     Q+     I++     E  K  + + G +  LV  L S +   Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR 408
           AA  +  L       +L   ++ G++  + L++  T +    +     + +LS +D    
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLR-RTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 409 ILSSTTSFII--------------QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS 454
            L +    ++                    +  +  +   ++  L NLS +D  ++ + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 455 CMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALN 514
             G +  LM   +         D  +       +      D +   R  Q+      A  
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 515 KK 516
           +K
Sbjct: 243 EK 244

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 14/196 (7%)

Query: 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIRE-----QAVLALSIIV 233
                +  L   + + K +  +     +   ++L+    + +  E        L  S  +
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317

Query: 234 SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVL 293
            ++  S+ I  +E GL  + R+L++G+  +    A  +  ++  P     +        +
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEV 376

Query: 294 IEAFRSGTAL------TQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNL-A 345
                S T          S A   +RN+ A    +         +  ++    SS++  A
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 346 QENAADCIATLAASGE 361
            E A   ++ + +S E
Sbjct: 437 AEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSS--- 220
           +  I   LQ G  +  +     L  + +       +         +  LL  H  ++   
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNS 390

Query: 221 --IREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGV 271
             I   A   +  ++++  +  K  F    L  ++ +  + + P   +AA  +
Sbjct: 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 9/231 (3%)

Query: 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230
            Q    + ++ ALE L  L ++ D +AA   +   +  L+        + +R +A   + 
Sbjct: 26  EQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 84

Query: 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMP-LKEKAAIGVEAITTDPENAWAISA-YG 288
                    ++ V   G L  LLR+L+  +   ++ KA   +  +  + E          
Sbjct: 85  TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD 144

Query: 289 GVSVLIEAFRSGTALTQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQE 347
           G SVL+ A +      +  +   ++N+     + K  L   G V  LV  + +  +   E
Sbjct: 145 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204

Query: 348 NAADCIATLAASGEYFRLLIIQ-----ERGLQRLMHLIQDSTSSIVTVENA 393
           +    + +L            +     E  L+    L+Q        +E  
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFC 255

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 6/205 (2%)

Query: 264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF-RSGTALTQSHAVGAIRNIA-AVEDI 321
           +E A   +  +  + +NA       G+ +L+  +  +G A  +  A   I   +  V  I
Sbjct: 34  REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI 93

Query: 322 KAALAEEGAVPVLVQSLTSSSNLA-QENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
           +  +   GA+  L++ L   +    +  A   I+ L    E   L  ++  G   LM  +
Sbjct: 94  QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM 153

Query: 381 QDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440
           Q           +   + +L +     +    +   + QL   ++  +    +     L 
Sbjct: 154 QQ--QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 211

Query: 441 NL-SISDGNKRAVASCMGSLIKLME 464
           +L +      R        L +L+ 
Sbjct: 212 SLVTDFPQGVRECREPELGLEELLR 236

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 285 SAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED--IKAALAEEGAVPVLVQSLTSSS 342
           +    V  +++   S    +Q  A  A R + + E       +   G +P  V  L  + 
Sbjct: 10  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 343 N-LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSI 387
               Q  +A  +  +A+        ++    +   + L+    + I
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.53
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.5
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.32
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.26
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.22
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.22
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.18
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.92
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.84
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.81
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.73
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.7
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.49
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.38
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.35
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.28
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.2
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.17
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.77
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.26
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.02
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.51
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	92.86
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.25
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.03
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.84
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.82
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	81.44

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-32  Score=291.34  Aligned_cols=386  Identities=15%  Similarity=0.157  Sum_probs=331.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ...|+.|+.+|++++.+++..|+..|..++..+......+...|+|+.|+++|...+++++++.|+.+|.+++. +++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhH
Confidence            45699999999999999999999999999875544444444568899999999735679999999999999999 99999


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V  318 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~  318 (579)
                      ..+++.|++++|+++|++++++++..|+++|.+|+. ++..+..+.+.|+++.|+.+++++++.++..++.+|.+++. +
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999996 45567788899999999999999999999999999999997 5


Q ss_pred             hhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          319 EDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       319 ~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      ++.+..+.+.|+++.++.++. ...+.++..++.++.+++..+ ..+..+.+.|+++.|+.++.+.+.  .++..+++++
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll~~~~~--~~~~~a~~~l  251 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL  251 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCH--HHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHhcccch--hhhhhhhhHH
Confidence            667788889999999999995 456789999999999998754 568889999999999999988775  8999999999


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhc-cCCCCHhHHH
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLM-ECPKPVGLQE  473 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL-~~~~~~~v~~  473 (579)
                      .+++.... ......  |+++.|+.++.+++..++..|+.+|++|+ .+++++..+.+.  ++.|+.++ ..++..++++
T Consensus       252 ~~ls~~~~-~~~~~~--~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~  328 (529)
T d1jdha_         252 RNLSDAAT-KQEGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  328 (529)
T ss_dssp             HHHHTTCT-TCSCCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             Hhcccccc-chhhhh--hcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHH
Confidence            99976521 112224  78999999999999999999999999999 777888888777  89999877 3456788999


Q ss_pred             HHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123          474 AATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA  550 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~  550 (579)
                      .++.+|++|+.....   .+..+...++++.|++++.+++.....+.+++++.+++.++.  .+..+.+.|+++.|++++
T Consensus       329 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~--~~~~l~~~g~i~~L~~lL  406 (529)
T d1jdha_         329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh--hhhhhhhcccHHHHHHHH
Confidence            999999999976554   334455688999999999887665577888999999998877  899999999999999998


Q ss_pred             ccCCc
Q 047123          551 ETEVP  555 (579)
Q Consensus       551 ~~~~~  555 (579)
                      ....+
T Consensus       407 ~~~~~  411 (529)
T d1jdha_         407 VRAHQ  411 (529)
T ss_dssp             HHHHH
T ss_pred             hcCCH
Confidence            76543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-32  Score=289.89  Aligned_cols=388  Identities=18%  Similarity=0.185  Sum_probs=338.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .|+.|+.+|++++++++..|+.+|.+++.+++..+..+.+.|+++.|+.+|+ ++++.++..++.+|.+++..+++++..
T Consensus       102 ~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHH-ccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4899999999999999999999999999999999999999999999999999 999999999999999999867888899


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +...|++++|+.++..+ ...++..+++++.+++.+++++..+.+.|+++.|+.++.+++..++..+++++.+++.....
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~  260 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc
Confidence            99999999999999775 57889999999999999999999999999999999999999999999999999999864332


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                        .....|+++.|++++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++...+.++.+++.++.+|++++
T Consensus       261 --~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         261 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             --CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             --hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence              122357899999999999999999999999999998888889999999999999988765554689999999999999


Q ss_pred             cc-----hhHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC-------
Q 047123          402 LS-----DSAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP-------  466 (579)
Q Consensus       402 ~~-----~~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~-------  466 (579)
                      ..     .....+...  ++++.++.++..++ ..++..+..++++++.+++++..+.+.  ++.|++++...       
T Consensus       339 ~~~~~~~~~~~~i~~~--~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~  416 (529)
T d1jdha_         339 SRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  416 (529)
T ss_dssp             SSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             chhhcchhhhhhHHhc--ccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHH
Confidence            76     234445566  89999999997654 467788899999999889999988887  89999887211       


Q ss_pred             --------------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123          467 --------------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG  532 (579)
Q Consensus       467 --------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~  532 (579)
                                    ...++.+.++.+|+.++....++..+ .+.++++.|+++|.++++. .+..++.+|.+|+.+++  
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~-~~~~~i~~Lv~lL~~~~~~-v~~~a~~aL~~L~~~~~--  492 (529)
T d1jdha_         417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE--  492 (529)
T ss_dssp             ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHH-HHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHTTSHH--
T ss_pred             HHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHH-HHCCCHHHHHHHhCCCCHH-HHHHHHHHHHHHhcChh--
Confidence                          12466788889999999876666544 4689999999999988877 78999999999987755  


Q ss_pred             HHHHHHHcCchHHHHhhhccCCchHHH
Q 047123          533 CRKRLVAAGAYQHLQKLAETEVPGAKK  559 (579)
Q Consensus       533 ~r~~i~~~g~~~~L~~L~~~~~~~ak~  559 (579)
                      .++.|.+.|++++|++|++++++..++
T Consensus       493 ~~~~i~~~g~~~~L~~Ll~s~n~~v~~  519 (529)
T d1jdha_         493 AAEAIEAEGATAPLTELLHSRNEGVAT  519 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHH
Confidence            899999999999999999999886543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-31  Score=275.81  Aligned_cols=397  Identities=15%  Similarity=0.181  Sum_probs=332.5

Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChh-hHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123          159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDK-SAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND  237 (579)
Q Consensus       159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~  237 (579)
                      ..++.|+++++.|++++++.+..|+..++++.+.+.. ....+.+.|++|.|+++|+.++++++|..|+++|.+++..++
T Consensus        10 ~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~   89 (434)
T d1q1sc_          10 TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS   89 (434)
T ss_dssp             SSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred             hhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence            3456799999999999999999999999988653333 356788999999999999724568999999999999988677


Q ss_pred             hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHH
Q 047123          238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTA-----LTQSHAVGA  311 (579)
Q Consensus       238 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~a~~a  311 (579)
                      +.+..+++.|+++.|+.+|.+++.++++.++++|.+++.+ ++.+..+.+.|+++.|+.++...+.     .....+.++
T Consensus        90 ~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (434)
T d1q1sc_          90 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  169 (434)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred             hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence            8899999999999999999999999999999999999964 5677888899999999999987543     456677888


Q ss_pred             HHHhhcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123          312 IRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV  390 (579)
Q Consensus       312 L~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~  390 (579)
                      +.+++.... ........++++.++.++.++++.++..++++|.+++..++..+..+...|+++.++.++.+.+.  .++
T Consensus       170 l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~--~~~  247 (434)
T d1q1sc_         170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIV  247 (434)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHH
T ss_pred             HHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchh--hhh
Confidence            999887543 33334466789999999999999999999999999998887777788889999999999988765  899


Q ss_pred             HHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccC
Q 047123          391 ENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMEC  465 (579)
Q Consensus       391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~  465 (579)
                      ..++.+|.+++..  .....+++.  |+++.|..++++.+++++..++.+|.+++ .+++....+.+.  ++.+++++ .
T Consensus       248 ~~al~~l~~l~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l-~  324 (434)
T d1q1sc_         248 TPALRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-S  324 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHT--TGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-H
T ss_pred             hchhhhhhhHHhhhhHHHHHHHhc--cccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHH-h
Confidence            9999999999987  456678888  99999999999999999999999999999 677777777777  99999999 6


Q ss_pred             CCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-----CCChhHHHHHHH
Q 047123          466 PKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-----GGSNGCRKRLVA  539 (579)
Q Consensus       466 ~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-----~~~~~~r~~i~~  539 (579)
                      ..+.+++..|+.+|++++..... ....+.+.|+++.|+++++.++++ ....++.++.++..     ......+..+.+
T Consensus       325 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~-~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~  403 (434)
T d1q1sc_         325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEE  403 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            67899999999999999876543 333344688999999999988877 66677777776652     122235677889


Q ss_pred             cCchHHHHhhhccCCchHHHHH
Q 047123          540 AGAYQHLQKLAETEVPGAKKVL  561 (579)
Q Consensus       540 ~g~~~~L~~L~~~~~~~ak~~~  561 (579)
                      .|+++.|..|.+++++...+..
T Consensus       404 ~~~~~~i~~L~~~~n~~i~~~a  425 (434)
T d1q1sc_         404 CGGLDKIEALQRHENESVYKAS  425 (434)
T ss_dssp             TTSHHHHHHHHTCSSHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHH
Confidence            9999999999988887654443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-28  Score=261.39  Aligned_cols=391  Identities=15%  Similarity=0.161  Sum_probs=332.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123          162 LFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR  240 (579)
Q Consensus       162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~  240 (579)
                      ..++.++..+++++.+.+..|+..++.+.+ +.......+++.|++|.|+++++.+.+..+|..|+++|.+++..++...
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            358889999999999999999999998864 4445577889999999999999834468899999999999998677788


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123          241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE  319 (579)
Q Consensus       241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~  319 (579)
                      ..+...|+++.++.+|.+++.++++.++++|++|+. +++++..+.+.|+++.|+.++.+.+..++..++++|.|++.+.
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence            889999999999999999999999999999999996 5688999999999999999999999999999999999999754


Q ss_pred             h-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          320 D-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       320 ~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      . ........++++.++.++.+.++.++..++++|.+++..++.....+.+.|+++.++.++.+.+.  .++..++.+|+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~al~~l~  313 (503)
T d1wa5b_         236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST--LVQTPALRAVG  313 (503)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCch--hhhhhHHHHHH
Confidence            3 33444567899999999999999999999999999998887778889999999999999998775  89999999999


Q ss_pred             Hcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHH
Q 047123          399 SLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQE  473 (579)
Q Consensus       399 ~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~  473 (579)
                      +++.+  .....++..  |+++.|..++++.++.++..++++|.|++ .+++....+.+.  ++.++.++ ...+.+++.
T Consensus       314 nl~~~~~~~~~~~~~~--~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l-~~~~~~v~~  390 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL-EVAEYKTKK  390 (503)
T ss_dssp             HHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHSCHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--chHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhc-ccCChhHHH
Confidence            99987  445567788  99999999999999999999999999999 677888888777  99999999 677899999


Q ss_pred             HHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC----------CCChhHHHHHHHc
Q 047123          474 AATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG----------GGSNGCRKRLVAA  540 (579)
Q Consensus       474 ~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~----------~~~~~~r~~i~~~  540 (579)
                      .++.+|.|++....+.   ...+.+.++++.|+++|+..+.+ ....++.++.++..          .........|.+.
T Consensus       391 ~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~-~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~  469 (503)
T d1wa5b_         391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNINENADFIEKA  469 (503)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHC
Confidence            9999999998654332   23334689999999999988776 45555555555431          1111245678899


Q ss_pred             CchHHHHhhhccCCchHH
Q 047123          541 GAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       541 g~~~~L~~L~~~~~~~ak  558 (579)
                      |++..|..|..++++...
T Consensus       470 g~~~~i~~Lq~~~~~~i~  487 (503)
T d1wa5b_         470 GGMEKIFNCQQNENDKIY  487 (503)
T ss_dssp             THHHHHHGGGGCSCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHH
Confidence            999999999888876543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.9e-27  Score=242.93  Aligned_cols=355  Identities=15%  Similarity=0.198  Sum_probs=305.4

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++.|+.+|+. ++++++..|+.+|.+++..+++.+..+.+.|+++.|+++|. ++++.+++.|+.+|.+++.++++++.
T Consensus        57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~-~~~~~~~~~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_          57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccc-cCCHHHHHHHHHHHHHHhccchHHHH
Confidence            58999999965 46889999999999999999899999999999999999999 99999999999999999986788899


Q ss_pred             HHHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          242 IVFEEGGLGPLLRILETGS-----MPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~-----~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      .+.+.|+++.++.++...+     ......+++++.+++.+. .........++++.|+.++.++++.++..++++|.++
T Consensus       136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l  215 (434)
T d1q1sc_         136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL  215 (434)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhccc
Confidence            9999999999999998753     455677888999998654 3334445577889999999999999999999999999


Q ss_pred             hcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123          316 AAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL  394 (579)
Q Consensus       316 s~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~  394 (579)
                      +.++ +....+.+.|+++.++.++.+++..++..++.+|.+++..++..+..+.+.|+++.++.++.+.+.  .++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~a~  293 (434)
T d1q1sc_         216 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEAT  293 (434)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH--HHHHHHH
T ss_pred             chhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccch--hhhHHHH
Confidence            9854 455667789999999999999999999999999999999888888899999999999999987765  8999999


Q ss_pred             HHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123          395 LAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKP  468 (579)
Q Consensus       395 ~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~  468 (579)
                      .+|.+++..  +....+...  |+++.++.++.+.+..++..|++++.+++  .+++....+.+.  ++.|++++ +.++
T Consensus       294 ~~L~~l~~~~~~~~~~i~~~--~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~d  370 (434)
T d1q1sc_         294 WTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKD  370 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHT-TSSC
T ss_pred             HHHhhhccccchhHHHHhhh--hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-cCCC
Confidence            999999986  556667788  99999999999999999999999999999  566777777777  99999999 7888


Q ss_pred             HhHHHHHHHHHHHhhcC------CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHH
Q 047123          469 VGLQEAATDAVLSLLTV------RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAA  524 (579)
Q Consensus       469 ~~v~~~a~~aL~~L~~~------~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~  524 (579)
                      .+++..++.+|.+|...      .......+.+.+|++.|-.+.++++++ ..+.+..++-+
T Consensus       371 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~-i~~~a~~il~~  431 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence            99999999999999742      122445566788999887777777766 66777766644

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.7e-26  Score=244.16  Aligned_cols=359  Identities=15%  Similarity=0.180  Sum_probs=310.5

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123          163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      .++.|+..|+. .+.+.+..|+.+|.+++..++.....+...|+++.++.+|. +++.++++.|+++|++|+..+++++.
T Consensus       120 ~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~-s~~~~i~~~a~~~L~nia~~~~~~r~  198 (503)
T d1wa5b_         120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRD  198 (503)
T ss_dssp             CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc-CCChhHHHHHHHHHHHHhhhhHHHHH
Confidence            58899999985 46789999999999999988888899999999999999999 99999999999999999986789999


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Ch
Q 047123          242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VE  319 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~  319 (579)
                      .+.+.|++++|+.++.+.+..++..++++|.+++.+. .........++++.|+.++.+.++.++..++++|.+++. .+
T Consensus       199 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~  278 (503)
T d1wa5b_         199 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ  278 (503)
T ss_dssp             HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence            9999999999999999999999999999999999654 333344457899999999999999999999999999997 44


Q ss_pred             hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHH
Q 047123          320 DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS  399 (579)
Q Consensus       320 ~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~  399 (579)
                      +....+.+.|+++.++.++.+++..++..++.++.+++..++.....+.+.|+++.+..++.+.++  .++..++++|.|
T Consensus       279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~--~i~~~~~~~l~n  356 (503)
T d1wa5b_         279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE--NIKKEACWTISN  356 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCH--HHHHHHHHHHHH
Confidence            556778899999999999999999999999999999999887778888899999999999987765  899999999999


Q ss_pred             cccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123          400 LSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC--MGSLIKLMECPKPVGL  471 (579)
Q Consensus       400 L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v  471 (579)
                      ++.+  .....+++.  |+++.++.++.+++.+++..|+++|.|++    ..++....+.+.  ++.|+.+| +..+.++
T Consensus       357 l~~~~~~~~~~i~~~--~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~  433 (503)
T d1wa5b_         357 ITAGNTEQIQAVIDA--NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRI  433 (503)
T ss_dssp             HTTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHHH
T ss_pred             HhhccHHHHHHHHHc--cccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh-cCCCHHH
Confidence            9986  556778888  99999999999999999999999999998    223555666666  99999999 7778999


Q ss_pred             HHHHHHHHHHhhcCC-----------cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123          472 QEAATDAVLSLLTVR-----------SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG  528 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~-----------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~  528 (579)
                      ...+..+|.+|....           ......+.+.||+..|..+..+.+.+ +.+.|..+|-.+...
T Consensus       434 ~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~-i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK-IYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH-HHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHcCC
Confidence            999999999986321           12344566788999887777676666 677888877766544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=239.30  Aligned_cols=364  Identities=13%  Similarity=0.141  Sum_probs=286.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .||.|+.+|++++++++..|+.+|.++|.++++++..+.+.|+||.|+++|+ ++++++|+.|+.+|.+|+..+++++..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999 999999999999999999768999999


Q ss_pred             HHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh---------------cCCCHHHHH
Q 047123          243 VFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF---------------RSGTALTQS  306 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll---------------~~~~~~~~~  306 (579)
                      +.+.|+++.|+.++.+ .+++++..++++|.+++.++.....+...|+.+.+..++               ...+..++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999976 588899999999999999888877777655433333322               234678999


Q ss_pred             HHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCC------CHHHHHHHHHHHHHHh---------------c------
Q 047123          307 HAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSS------SNLAQENAADCIATLA---------------A------  358 (579)
Q Consensus       307 ~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~~La---------------~------  358 (579)
                      .++++|.+++.+++++..+. ..|+++.++.++.+.      .......+...+.+..               .      
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            99999999999988888776 457789988887421      1111111211211110               0      


Q ss_pred             -----------------------------CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h----
Q 047123          359 -----------------------------SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D----  404 (579)
Q Consensus       359 -----------------------------~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~----  404 (579)
                                                   .+......+...++++.++.++..... +..++.+..++.+++.. .    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccc-hHHHHHHHHHHHHHhhccccchH
Confidence                                         001111222334566778887776554 57889999999999875 1    


Q ss_pred             --hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCC-----CCHhHHHHHH
Q 047123          405 --SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECP-----KPVGLQEAAT  476 (579)
Q Consensus       405 --~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~-----~~~~v~~~a~  476 (579)
                        ....+...  |+++.|+.++.+.++.++..++.++++|+.+++++..+.+. ++.|+.++...     .+.+++..++
T Consensus       321 ~~~~~~~~~~--~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKE--KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTS--CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHc--CChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence              23334455  89999999999999999999999999999999999988877 99999988432     2467999999


Q ss_pred             HHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          477 DAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       477 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      .+|.+|+..++..+..+.+.||++.|++++.+.++...++.|..+|.+|+.++.
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            999999977665555555789999999999876554478899999999987764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=225.04  Aligned_cols=362  Identities=12%  Similarity=0.171  Sum_probs=269.9

Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCccHH
Q 047123          204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT-TDPENAW  282 (579)
Q Consensus       204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls-~~~~~~~  282 (579)
                      +.||.|+++|+ ++++++|..|+.+|.++|..+++++..+.+.|++|+|+++|+++++++++.|+++|.+|+ .+++++.
T Consensus         2 ~~ip~lv~~L~-~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46999999999 999999999999999999868999999999999999999999999999999999999999 5778999


Q ss_pred             HHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh---------------cCCCHHHH
Q 047123          283 AISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL---------------TSSSNLAQ  346 (579)
Q Consensus       283 ~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL---------------~~~~~~v~  346 (579)
                      .+.+.|+++.|+.++.+ .++.++..++++|.+++..+..+......|..+.+..++               ...+..++
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            99999999999998865 678899999999999999888777776655444333332               23467899


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC----CChHHHHHHHHHHHHcccc-------------------
Q 047123          347 ENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST----SSIVTVENALLAISSLSLS-------------------  403 (579)
Q Consensus       347 ~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~----~~~~~~~~A~~aL~~L~~~-------------------  403 (579)
                      ..++.+|.+++..++..+......|+++.++.++.+..    ........+...+.+....                   
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence            99999999999876554444445778899988875321    1011222222222211110                   


Q ss_pred             ---------------------------------hhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCC-hhh
Q 047123          404 ---------------------------------DSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLSIS-DGN  448 (579)
Q Consensus       404 ---------------------------------~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~~~-~~~  448 (579)
                                                       .....+...  ++++.++.++.. .++.++..+..++.+++.+ ...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS--DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhh--cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                             111112223  677778888754 5778899999999999832 221


Q ss_pred             ----H-HHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch-----hhhhH
Q 047123          449 ----K-RAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE-----ALNKK  516 (579)
Q Consensus       449 ----~-~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~~k~  516 (579)
                          . ..+.+.  ++.|++++ .+.+..++..++.+|++|+.+..++..+.  .++++.++.+|.....     ...+.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~l~~La~~~~~~~~i~--~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhh-cCccHHHHHHHHHHHHHHhhChhHHHHHH--HhhHHHHHHHHhccccCcCCcHHHHH
Confidence                2 222222  99999999 88899999999999999999887766554  5789999999965432     22677


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchH-H---HHHHHHh-cCcchhh
Q 047123          517 FPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGA-K---KVLQRLA-GNRLKNI  572 (579)
Q Consensus       517 ~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~a-k---~~~~~l~-~~~~~~~  572 (579)
                      .++.+|.+++... .++++.+++.|+++.|++++++. ++.. +   .++..|+ ...+|++
T Consensus       396 ~a~~~L~~l~~~~-~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~  456 (457)
T d1xm9a1         396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHhh
Confidence            8889999998654 34899999999999999998765 4443 2   3444444 3445543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-19  Score=170.75  Aligned_cols=195  Identities=17%  Similarity=0.193  Sum_probs=176.0

Q ss_pred             cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123          173 IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP  251 (579)
Q Consensus       173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~  251 (579)
                      ..+.+.+..|+..|.+++. +.++...+...|+++.++. +++ ++++++|..|+.+|++++.+++.++..+.+.|++++
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~-s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            4566889999999999994 6677888899999999986 788 999999999999999999867889999999999999


Q ss_pred             HHHHHcc-CCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHc
Q 047123          252 LLRILET-GSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEE  328 (579)
Q Consensus       252 Lv~lL~~-~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~  328 (579)
                      |+++|.+ .++.++..++++|.+++. +++++..+...|+++.|+.++.+++..++..++++|.+++. +++.+..+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9999975 578999999999999995 56788899999999999999999999999999999999976 78899999999


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 047123          329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ  369 (579)
Q Consensus       329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~  369 (579)
                      |+++.|+.++.++++.+++.++++|.+|+...+.....+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999887776666554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.4e-18  Score=164.09  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=173.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHH
Q 047123          259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQ  336 (579)
Q Consensus       259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~  336 (579)
                      .+.+.+..|+.+|.+|+.+.+++..+...||++.|+. ++.++++.++..|+.+|.+++. ++..+..+.+.|++|.|+.
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            3667899999999999999999999999999999986 7788999999999999999998 5678888999999999999


Q ss_pred             Hhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhc
Q 047123          337 SLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSST  413 (579)
Q Consensus       337 lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~  413 (579)
                      ++. +.++.++..++++|.+++..++..+..+...|+++.|++++.+.+.  .++..++.+|++++..  .....+... 
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~-  185 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLVGHPEHKGTLCSM-  185 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHCGGGHHHHHHT-
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCch--HHHHHHHHHHHHHHhccHHHHHHHHHh-
Confidence            995 5678999999999999999998889999999999999999998775  8999999999999976  677888888 


Q ss_pred             CcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHH
Q 047123          414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVAS  454 (579)
Q Consensus       414 ~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~  454 (579)
                       |+++.|+.++++++++++..|+.+|.+|+ .+++..+.+..
T Consensus       186 -~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         186 -GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             -THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             -hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence             99999999999999999999999999999 66666555543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-12  Score=140.99  Aligned_cols=372  Identities=8%  Similarity=0.005  Sum_probs=252.5

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      ++.+..+++.+++.+|..|+.++..++..-+..   -.....++.+..+++ +.+..+|..++.+|+.++.   .....+
T Consensus       205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~-D~~~~Vr~~~~~~l~~l~~---~~~~~~  277 (588)
T d1b3ua_         205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQK---AVGPEI  277 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHH---HHCHHH
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcc-cccHHHHHHHHHhHHHHHH---Hhhhhh
Confidence            344445555666666666666666665322111   011224666777777 7777777777777777765   111223


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      .....++.+..++.+.+.+++..++..+..++.  ..+......-...++.+...+.+.++.++..++.++..++..-..
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~  357 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK  357 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch
Confidence            334568888888888899999999999888873  333444444456788888898899999999888887766542111


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                      .  ......+|.+..++.+.++.++..++.++..+...-..   .-.....++.+..++.+.+.  .++..++.++..++
T Consensus       358 ~--~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~---~~~~~~ll~~l~~~~~d~~~--~~r~~~~~~l~~l~  430 (588)
T d1b3ua_         358 D--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKW--RVRLAIIEYMPLLA  430 (588)
T ss_dssp             H--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHH
T ss_pred             h--HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch---hhhhhHHHHHHHHHHhcccH--HHHHHHHHHHHHHH
Confidence            1  11233688899999999999999998888776642111   11123456778888877765  89999999999887


Q ss_pred             cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHH
Q 047123          402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDA  478 (579)
Q Consensus       402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~a  478 (579)
                      ..-... ....  ...+.+..++.+....+|..|+.++..|..  .++   ...+. ++.+.+++ .+++...|..++.+
T Consensus       431 ~~~~~~-~~~~--~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~-~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         431 GQLGVE-FFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMS-GDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHHCGG-GCCH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTT-TCSCHHHHHHHHHH
T ss_pred             HHcChH-hHHH--HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence            641101 1112  356667778888999999999999999972  222   22233 88888999 78889999999999


Q ss_pred             HHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHH
Q 047123          479 VLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK  558 (579)
Q Consensus       479 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak  558 (579)
                      +..+....+  .... ....++.+++++.++.++ +|..++.++..+...-+    .........+.|.+|.+.++.+.|
T Consensus       504 l~~l~~~~~--~~~~-~~~ilp~ll~~~~D~v~n-VR~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~L~~D~d~dVr  575 (588)
T d1b3ua_         504 INVLSEVCG--QDIT-TKHMLPTVLRMAGDPVAN-VRFNVAKSLQKIGPILD----NSTLQSEVKPILEKLTQDQDVDVK  575 (588)
T ss_dssp             HHHHHHHHH--HHHH-HHHTHHHHHHGGGCSCHH-HHHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHcC--hHHH-HHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHcC----cHhHHHHHHHHHHHHcCCCCHHHH
Confidence            998875322  1222 245789999999988887 88889999999876555    223344567888899888887766


Q ss_pred             ----HHHHHH
Q 047123          559 ----KVLQRL  564 (579)
Q Consensus       559 ----~~~~~l  564 (579)
                          ++++.|
T Consensus       576 ~~A~~al~~l  585 (588)
T d1b3ua_         576 YFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence                444444

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-12  Score=135.97  Aligned_cols=370  Identities=12%  Similarity=0.059  Sum_probs=266.5

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      ....++.+..++++.++.+|..|+..+..++..-+.   .......++.+..+++ +++..+|..|+.++..++...+. 
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~i~~~~~~-  236 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQ-  236 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHhhccCCH-
Confidence            344567777888999999999999999999864322   1234567888889999 99999999999999998762221 


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--
Q 047123          240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--  317 (579)
Q Consensus       240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--  317 (579)
                        .......++.+..++.+.+..+|..++.+|.++...-.  ..+.....++.+..++.+.++.++..++.++..++.  
T Consensus       237 --~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence              11223468888999999999999999999999874211  123335678999999999999999999999988875  


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123          318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI  397 (579)
Q Consensus       318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL  397 (579)
                      .........-...++.+...+.+.+..++..++.++..++..-   .........++.+..++.+.+.  .++..+...+
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~---~~~~~~~~l~p~l~~~l~d~~~--~v~~~~~~~l  387 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLKDECP--EVRLNIISNL  387 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH---CHHHHHHHTHHHHHHHHTCSCH--HHHHHHHTTC
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc---chhHHHHHHHHHHHHHHHhhhh--hhhhHHHHHH
Confidence            3334444444567888888999999999999988887765311   1111224457888888877665  7888888777


Q ss_pred             HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHH
Q 047123          398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEA  474 (579)
Q Consensus       398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~  474 (579)
                      ..+...-....+.+   ..++.+..++++.+..++..++.++..++.  ..+.   +.+. .+.+..++ .+....+|..
T Consensus       388 ~~~~~~~~~~~~~~---~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l-~D~~~~VR~~  460 (588)
T d1b3ua_         388 DCVNEVIGIRQLSQ---SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWL-VDHVYAIREA  460 (588)
T ss_dssp             HHHHHHSCHHHHHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGG-GCSSHHHHHH
T ss_pred             HHHHhhcchhhhhh---HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhc-cCCchhHHHH
Confidence            76665422233333   478889999999999999999999998872  2221   2223 66777888 6778999999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCC
Q 047123          475 ATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEV  554 (579)
Q Consensus       475 a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~  554 (579)
                      |+.+|+.|+.....  ... ....++.+.+++.+++.. .+..++.++..+...    +.........++.|.+++.+.+
T Consensus       461 A~~~L~~l~~~~~~--~~~-~~~i~~~l~~~~~~~~~~-~R~~~~~~l~~l~~~----~~~~~~~~~ilp~ll~~~~D~v  532 (588)
T d1b3ua_         461 ATSNLKKLVEKFGK--EWA-HATIIPKVLAMSGDPNYL-HRMTTLFCINVLSEV----CGQDITTKHMLPTVLRMAGDPV  532 (588)
T ss_dssp             HHHHHHHHHHHHCH--HHH-HHHTHHHHHHTTTCSCHH-HHHHHHHHHHHHHHH----HHHHHHHHHTHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHhCc--HHH-HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHH----cChHHHHHHHHHHHHHHcCCCC
Confidence            99999999854221  112 234677888888877765 677777777777542    2233444568899999998888


Q ss_pred             chHH
Q 047123          555 PGAK  558 (579)
Q Consensus       555 ~~ak  558 (579)
                      +..|
T Consensus       533 ~nVR  536 (588)
T d1b3ua_         533 ANVR  536 (588)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-10  Score=128.49  Aligned_cols=356  Identities=14%  Similarity=0.108  Sum_probs=217.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.+...+++.++..|..|+.+|+.++.+..+..... -...++.|+..++ ++++.+|..|+++|+.++.........
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            45556677788999999999999999886544332211 1346788889999 999999999999999887521111111


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--  318 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--  318 (579)
                      -.-...++.++..+.+.++.+++.|+++|.++...  +.....  -...++.|+..+...+......+..++..++..  
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            12346788999999999999999999999998731  111110  123456666666665555454444444444320  


Q ss_pred             hhh-HHHHHHcCCHHHHHHH------------------------hcC---------------------------------
Q 047123          319 EDI-KAALAEEGAVPVLVQS------------------------LTS---------------------------------  340 (579)
Q Consensus       319 ~~~-~~~l~~~g~v~~Lv~l------------------------L~~---------------------------------  340 (579)
                      +.. +....+ ..++.++..                        +..                                 
T Consensus       552 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         552 HHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             ccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            000 000000 001111110                        000                                 


Q ss_pred             ---CCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcC
Q 047123          341 ---SSNLAQENAADCIATLAAS-GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTT  414 (579)
Q Consensus       341 ---~~~~v~~~a~~~L~~La~~-~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~  414 (579)
                         .+.+....++.++..+... .+.....+.....++.+...+.+.+.  .+++.|..++..++..  ......++   
T Consensus       631 ~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~--~vr~~a~~llgdl~~~~~~~~~~~l~---  705 (888)
T d1qbkb_         631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP--EVRQSSFALLGDLTKACFQHVKPCIA---  705 (888)
T ss_dssp             SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHCGGGTGGGHH---
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHhhhHHHHHHHH---
Confidence               1223333334444433321 11122223334455666666666554  8999999999888865  33333333   


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCC-CHhHHHHHHHHHHHhhcCCcchh-
Q 047123          415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPK-PVGLQEAATDAVLSLLTVRSNRK-  490 (579)
Q Consensus       415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~-~~~v~~~a~~aL~~L~~~~~~~~-  490 (579)
                      .+++.+...|.+...+++..|+++++.|+  ..++.+.++..-++.|++++++.+ +..++++++.+|+.|+...++.. 
T Consensus       706 ~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~  785 (888)
T d1qbkb_         706 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA  785 (888)
T ss_dssp             HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHH
Confidence            36777777788888899999999999999  445555555555999999995443 46689999999999987654322 


Q ss_pred             HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123          491 ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS  530 (579)
Q Consensus       491 ~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~  530 (579)
                      ..+  ...++.++.-|....++..|+.+...++.+....+
T Consensus       786 ~~l--~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p  823 (888)
T d1qbkb_         786 PML--QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP  823 (888)
T ss_dssp             GGG--GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred             hhH--HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence            222  34566677666554333367777777777765444

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.1e-09  Score=101.51  Aligned_cols=254  Identities=13%  Similarity=0.030  Sum_probs=188.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      ....|+..|+++++.+|..|+..|..+..           ...++.|+++++ ++++.+|..|+.+|+.+.. .......
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~-~~~~~~~   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKI-CKKCEDN   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCC-CTTTHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc-ccccccc
Confidence            36788999999999999999999988742           235899999999 9999999999999999976 4333322


Q ss_pred             HHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123          243 VFEEGGLGPLL-RILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI  321 (579)
Q Consensus       243 i~~~g~l~~Lv-~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~  321 (579)
                      +     ++.+. .++++.++.++..++.+|.++.......    ....++.+...+.+.++.++..++.++..+.     
T Consensus        87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-----  152 (276)
T d1oyza_          87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIN-----  152 (276)
T ss_dssp             H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-----
Confidence            2     23333 3456789999999999999987432211    1234677888888889999988887776543     


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123          322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS  401 (579)
Q Consensus       322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~  401 (579)
                           +...++.+..++...+..++..+..++.........         ..+.++..+...+.  .++..+..++..+.
T Consensus       153 -----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~al~~~~  216 (276)
T d1oyza_         153 -----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNE--EVRIEAIIGLSYRK  216 (276)
T ss_dssp             -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCH--HHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhh--hhhhhhccccchhh
Confidence                 345778888899888888888888888877665432         34445565655554  78888888887765


Q ss_pred             cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123          402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL  480 (579)
Q Consensus       402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~  480 (579)
                      ..           .+++.|+..+++.  .++..++.+|..+.....        ++.|.+++.+.++.+++..|.++|.
T Consensus       217 ~~-----------~~~~~L~~~l~d~--~vr~~a~~aL~~ig~~~~--------~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         217 DK-----------RVLSVLCDELKKN--TVYDDIIEAAGELGDKTL--------LPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             CG-----------GGHHHHHHHHTSS--SCCHHHHHHHHHHCCGGG--------HHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hh-----------hhHHHHHHHhCCh--HHHHHHHHHHHHcCCHHH--------HHHHHHHHccCCCHHHHHHHHHHHc
Confidence            43           6788888888754  588899999998863222        7888888856667889999888763

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.3e-09  Score=101.28  Aligned_cols=255  Identities=15%  Similarity=0.059  Sum_probs=187.4

Q ss_pred             hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123          203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW  282 (579)
Q Consensus       203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~  282 (579)
                      ....+.|+++|+ ++++.+|..|+.+|..+..           ..+++.|++++++.++.++..|+.+|..+........
T Consensus        18 ~~~~~~L~~~L~-d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          18 KLNDDELFRLLD-DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             TSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             cCCHHHHHHHhc-CCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            445778999999 9999999999999998876           3568999999999999999999999999975443322


Q ss_pred             HHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123          283 AISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE  361 (579)
Q Consensus       283 ~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~  361 (579)
                      .+     ++.|.. ++++.++.++..++.+|.++........    ...++.+...+.+.++.++..++.++..+..   
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~---  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND---  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch---
Confidence            22     334444 5678899999999999998876332211    1245677777888889999888887765422   


Q ss_pred             hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047123          362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGN  441 (579)
Q Consensus       362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~  441 (579)
                              ...++.+..++.....  ..+..+..++..+....       .  ...+.++..+...+..++..+..++..
T Consensus       154 --------~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 --------KATIPLLINLLKDPNG--DVRNWAAFAININKYDN-------S--DIRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSH--HHHHHHHHHHHHHTCCC-------H--HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHhcccccc--hhhhhHHHHHHhhhccc-------c--ccchhhhhhhhhhhhhhhhhhccccch
Confidence                    4456777777776654  67777777776655441       1  455667778888999999999999888


Q ss_pred             hcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHH
Q 047123          442 LSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV  521 (579)
Q Consensus       442 L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~  521 (579)
                      +...+.        ++.|++.+ .+  +.+|..++.+|+.+.           +...++.|.++|...++..++..|+..
T Consensus       215 ~~~~~~--------~~~L~~~l-~d--~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~  272 (276)
T d1oyza_         215 RKDKRV--------LSVLCDEL-KK--NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDK  272 (276)
T ss_dssp             TTCGGG--------HHHHHHHH-TS--SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred             hhhhhh--------HHHHHHHh-CC--hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            764333        78888888 32  358899999999875           246788999988765443367777665


Q ss_pred             H
Q 047123          522 T  522 (579)
Q Consensus       522 L  522 (579)
                      |
T Consensus       273 L  273 (276)
T d1oyza_         273 L  273 (276)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.9e-08  Score=116.48  Aligned_cols=349  Identities=14%  Similarity=0.143  Sum_probs=223.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .|..|+..+++.|++.|..|+..|......+......-.....++.|+++|+ +.++++|..|+.+|+.+....++.   
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~~---   79 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEY---   79 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHH---
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCcHh---
Confidence            5778889999999999999998888875432211111112236889999999 999999999999999998722221   


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC----CC--ccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT----DP--ENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNI  315 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~----~~--~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  315 (579)
                      .+ ...++.|+..+.+++...+..++.+|..+..    ..  ...........++.+...+.. .+..++..++.+|..+
T Consensus        80 ~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          80 QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            11 2457778888877888888888888776642    11  111111112244455554443 5678888899888877


Q ss_pred             hcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123          316 AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL  395 (579)
Q Consensus       316 s~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~  395 (579)
                      ...-..-..-.....++.++..+.+.+..++..|+.+|..++...+.   . .-...++.+++.+..+.. ...+..++.
T Consensus       159 ~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~-~~~~~~~~ll~~l~~~~~-~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I-VFVDLIEHLLSELSKNDS-MSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCS-SCSCTTHHH
T ss_pred             HHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHccCCC-HHHHHHHHH
Confidence            54111000000112466777778889999999999999999864322   1 113456777766654432 245666777


Q ss_pred             HHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-C-ChhhHHHHHHHHHHHHHhcc--------
Q 047123          396 AISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-I-SDGNKRAVASCMGSLIKLME--------  464 (579)
Q Consensus       396 aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~-~~~~~~~i~~~v~~Lv~lL~--------  464 (579)
                      ++..++.. ...  +...-+.+++.++..+...++++++.+..++..+. . ..+...++.+.++.+++.+.        
T Consensus       234 ~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            77777764 111  11112268889999999999999999999999887 3 33333333332333333221        


Q ss_pred             ----------------------------CCCCHhHHHHHHHHHHHhhcCCcch-hHHHhhcccHHHHHhhcCCCchhhhh
Q 047123          465 ----------------------------CPKPVGLQEAATDAVLSLLTVRSNR-KELVRDEKSVMRLMQMLDPKNEALNK  515 (579)
Q Consensus       465 ----------------------------~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~~~k  515 (579)
                                                  ++.+..+|..++.+|..+....+.. ..+.  ...++.++..+.++++. ++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~--~~~~~~L~~~l~d~~~~-vr  388 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREEN-VK  388 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSH-HH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHhcCCchH-HH
Confidence                                        2234578999999999998765432 2333  45788899999887777 67


Q ss_pred             HHHHHHHHHHh
Q 047123          516 KFPVMVTAAVL  526 (579)
Q Consensus       516 ~~av~~L~~L~  526 (579)
                      ..++.++..+.
T Consensus       389 ~~~~~~l~~l~  399 (1207)
T d1u6gc_         389 ADVFHAYLSLL  399 (1207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777666654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.5e-08  Score=108.47  Aligned_cols=336  Identities=16%  Similarity=0.119  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 047123          178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE  257 (579)
Q Consensus       178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~  257 (579)
                      .|..|..+|..++....+..    -.-.++.+.+.+. +++...|+.|+.+++.++....+.....+ ...++.++..+.
T Consensus       373 ~r~~a~~~L~~l~~~~~~~i----l~~~l~~l~~~l~-s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~  446 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDEL----LPHILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLS  446 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSS----HHHHHHHHHHTTT-SSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHhhhhHHHH----HHHHHHHHHHhhc-cchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhcc
Confidence            45556666655554222110    0113455556677 88899999999999999873332221111 235788888899


Q ss_pred             cCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHH
Q 047123          258 TGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPV  333 (579)
Q Consensus       258 ~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~  333 (579)
                      +.++.+|..++++|..++.  .+..... .-...++.++..+.+.++.++..|+.+|.++...  +.....+  ...++.
T Consensus       447 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~  523 (888)
T d1qbkb_         447 DKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDT  523 (888)
T ss_dssp             SSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHH
Confidence            9999999999999999883  1122222 2246888999999999999999999999998652  1111111  124566


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcC------ChhhHHHHH----h---------------------------cCcH---
Q 047123          334 LVQSLTSSSNLAQENAADCIATLAAS------GEYFRLLII----Q---------------------------ERGL---  373 (579)
Q Consensus       334 Lv~lL~~~~~~v~~~a~~~L~~La~~------~~~~r~~l~----~---------------------------~g~i---  373 (579)
                      ++..+..........+..++..++..      .+..-..+.    +                           .+..   
T Consensus       524 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~  603 (888)
T d1qbkb_         524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC  603 (888)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH
Confidence            77777766666555555555555421      111100000    0                           0000   


Q ss_pred             ----HHHHHhhcc---------------CCCChHHHHHHHHHHHHcccc--hhHHHHH-hhcCcHHHHHHHHHhcCCHHH
Q 047123          374 ----QRLMHLIQD---------------STSSIVTVENALLAISSLSLS--DSAARIL-SSTTSFIIQLGEFIKRGNVLL  431 (579)
Q Consensus       374 ----~~Lv~ll~~---------------~~~~~~~~~~A~~aL~~L~~~--~~~~~l~-~~~~g~i~~L~~lL~~~~~~v  431 (579)
                          +.+++.+..               ..........+..++..+...  .....++ ..  .+++.+...+++.++++
T Consensus       604 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~--~l~~~l~~~l~~~~~~v  681 (888)
T d1qbkb_         604 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS--NILTLMYQCMQDKMPEV  681 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS--CHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh--hHHHHHHHHhCCCChHH
Confidence                001111000               000112233333333333332  1122222 22  46667777888899999


Q ss_pred             HHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCC
Q 047123          432 QQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDP  508 (579)
Q Consensus       432 ~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~  508 (579)
                      +..|..++..++  ..+.....+.+-++.+++-+ +.....++..++.+++.++..- ...+.++  ...++.|++.+..
T Consensus       682 r~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L-~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~il~~L~~il~~  758 (888)
T d1qbkb_         682 RQSSFALLGDLTKACFQHVKPCIADFMPILGTNL-NPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINR  758 (888)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC-CGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHcC
Confidence            999999999988  33344444444488889988 6667889999999999998643 2333333  3567889999976


Q ss_pred             Cc-hhhhhHHHHHHHHHHhC
Q 047123          509 KN-EALNKKFPVMVTAAVLG  527 (579)
Q Consensus       509 ~~-~~~~k~~av~~L~~L~~  527 (579)
                      ++ +...++.++.++..|+.
T Consensus       759 ~~~~~~v~~n~~~~lgrl~~  778 (888)
T d1qbkb_         759 PNTPKTLLENTAITIGRLGY  778 (888)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHH
Confidence            54 33367888888887764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1e-05  Score=81.01  Aligned_cols=340  Identities=11%  Similarity=0.061  Sum_probs=216.4

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHH---HHHhhC--cHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAA---VVAKEG--NVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~---~i~~~g--~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      .+..++.+|.. ..++.....+..+.++..+++....   ...+..  .-+++..++. .++.-+...+...+..++...
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~-~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK-GDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC-SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhcc-CchhHHHHHHHHHHHHHHhcc
Confidence            47788888864 5677777778888888777664333   222222  2345556666 677778888888888887632


Q ss_pred             hhhHH---HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcC------------
Q 047123          237 DESRK---IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRS------------  299 (579)
Q Consensus       237 ~~~~~---~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~------------  299 (579)
                      .....   .+..  ....+-.+...++.+.+.-++.++..|...++.|..|..  ...+..|+..++.            
T Consensus       154 ~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         154 LHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             TCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            22222   1211  222333333556888888899999999999999988865  3357777776653            


Q ss_pred             -----CCHHHHHHHHHHHHHhhcChhhHHHHHHcC--CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh-----hHHH
Q 047123          300 -----GTALTQSHAVGAIRNIAAVEDIKAALAEEG--AVPVLVQSLT-SSSNLAQENAADCIATLAASGEY-----FRLL  366 (579)
Q Consensus       300 -----~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g--~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~-----~r~~  366 (579)
                           ...+++.+++-+++-|+..++....+.+..  .|+.++++++ +.-+.+...++.++.|+......     ....
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                 123679999999999999999888888764  5888888884 55678999999999999864321     2344


Q ss_pred             HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh
Q 047123          367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD  446 (579)
Q Consensus       367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~  446 (579)
                      ++..++++.+-.+...+-.++++.+.. ..|...                   |-+-.+.-+.--+..+----++|.=+|
T Consensus       312 ~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~-------------------L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP  371 (477)
T d1ho8a_         312 LLLGNALPTVQSLSERKYSDEELRQDI-SNLKEI-------------------LENEYQELTSFDEYVAELDSKLLCWSP  371 (477)
T ss_dssp             HHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHH-------------------HHHHHHTCCHHHHHHHHHHHTCCCCCG
T ss_pred             HHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHH-------------------HHHHHHhcCcHHHHHHHHhcCCCCCCC
Confidence            555666655444444433334433321 111111                   111111111111111111122333222


Q ss_pred             hhH-HHHHHH------------HHHHHHhcc---------CCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHh
Q 047123          447 GNK-RAVASC------------MGSLIKLME---------CPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ  504 (579)
Q Consensus       447 ~~~-~~i~~~------------v~~Lv~lL~---------~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~  504 (579)
                      -.+ +.|...            +..|+++|+         .++++.+...||.=++.+++..++.+.++.+-|+=..+++
T Consensus       372 ~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~  451 (477)
T d1ho8a_         372 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME  451 (477)
T ss_dssp             GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred             CcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence            222 223222            788888883         1346677888999999999999999999988888889999


Q ss_pred             hcCCCchhhhhHHHHHHHHHHh
Q 047123          505 MLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       505 lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      +|.+++++ ++..|+-++..+.
T Consensus       452 Lm~h~d~~-Vr~eAL~avQklm  472 (477)
T d1ho8a_         452 LLNHSDSR-VKYEALKATQAII  472 (477)
T ss_dssp             HTSCSSHH-HHHHHHHHHHHHH
T ss_pred             HhcCCCHH-HHHHHHHHHHHHH
Confidence            99999888 8888888777664

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.8e-06  Score=97.72  Aligned_cols=355  Identities=11%  Similarity=0.069  Sum_probs=215.8

Q ss_pred             hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123          157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN  236 (579)
Q Consensus       157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~  236 (579)
                      .+..+..++.++..|.+.++++|..|+.+|..+...-++..    -...++.|+..+. +++...+..+..+|..+....
T Consensus        40 ~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~----~~~l~~~L~~~l~-~~~~~~r~~~~~~L~~i~~~l  114 (1207)
T d1u6gc_          40 DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ----VETIVDTLCTNML-SDKEQLRDISSIGLKTVIGEL  114 (1207)
T ss_dssp             TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH----HHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh----HHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHHhc
Confidence            34455689999999999999999999999999986554432    1345778888777 778888888888877664311


Q ss_pred             hhh-----HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Q 047123          237 DES-----RKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVG  310 (579)
Q Consensus       237 ~~~-----~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~  310 (579)
                      +..     ....+....++.+...+.. .+..++..+..+|..+......-..-.....++.|+..+.+.+..++..|+.
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~  194 (1207)
T d1u6gc_         115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII  194 (1207)
T ss_dssp             C-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            111     0111112233444444443 4678899999888887631110000001235677888888999999999999


Q ss_pred             HHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCCh
Q 047123          311 AIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSSI  387 (579)
Q Consensus       311 aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~  387 (579)
                      +|..++..-...   .-...++.++..+ .+.+...+..++.++..++...+.   .+..  ...++.++..+...+.  
T Consensus       195 ~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~~~~~--  266 (1207)
T d1u6gc_         195 ALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDD--  266 (1207)
T ss_dssp             HHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCT--
T ss_pred             HHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch---hhHHHHHHHHHHHHHHhcCccH--
Confidence            999997632110   1123456666655 334445566677777777653322   1111  4567888888888776  


Q ss_pred             HHHHHHHHHHHHcccc--h----hHHHHHhh-------cCcH-----------------------HHHHHHHHhcCCHHH
Q 047123          388 VTVENALLAISSLSLS--D----SAARILSS-------TTSF-----------------------IIQLGEFIKRGNVLL  431 (579)
Q Consensus       388 ~~~~~A~~aL~~L~~~--~----~~~~l~~~-------~~g~-----------------------i~~L~~lL~~~~~~v  431 (579)
                      .+++.+..++..++..  .    ....++..       ++..                       ..............+
T Consensus       267 ~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v  346 (1207)
T d1u6gc_         267 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV  346 (1207)
T ss_dssp             TTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred             HHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHH
Confidence            7999999998888764  1    11111110       0000                       000001112234578


Q ss_pred             HHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh----------------HHH
Q 047123          432 QQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK----------------ELV  493 (579)
Q Consensus       432 ~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~----------------~~~  493 (579)
                      +..++.+|..+. ..++.-..+.+. ++.|+..+ ...+..+|..+..++..+........                ...
T Consensus       347 R~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  425 (1207)
T d1u6gc_         347 RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML  425 (1207)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHH
Confidence            889999999988 445554444444 89999999 67778899999999988864321110                001


Q ss_pred             h--hcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123          494 R--DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL  526 (579)
Q Consensus       494 ~--~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~  526 (579)
                      .  -...+..+.+.+.+.+.. .+..++.++..+.
T Consensus       426 ~~~~~~i~~~l~~~l~~~~~~-~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         426 QSQVPNIVKALHKQMKEKSVK-TRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHTTHHHHHHHHHTTCSCHH-HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHH
Confidence            0  012345566677766655 5666666666655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8e-06  Score=82.45  Aligned_cols=347  Identities=11%  Similarity=0.054  Sum_probs=208.2

Q ss_pred             HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHHHH-----------HhhCcHHHHHHhhccCCCHHHHHHHHHHH
Q 047123          163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAAVV-----------AKEGNVGYLISLLDFHHQSSIREQAVLAL  229 (579)
Q Consensus       163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i-----------~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL  229 (579)
                      ++..|...+.++  +...|..|+..|.+............           ........+++.+. +.+.. +..++.++
T Consensus        35 ~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~-~~~~~-~~~~~~~~  112 (458)
T d1ibrb_          35 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYR-PSSASQCV  112 (458)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSS-SCSHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccC-CCcHH-HHHHHHHH
Confidence            566677777544  46788888888877765433221111           12234455666666 55433 33445555


Q ss_pred             HHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCC--CHHH
Q 047123          230 SIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSG--TALT  304 (579)
Q Consensus       230 ~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~--~~~~  304 (579)
                      ..++. ......  ...+.++.++..+.++  +...+..+..++..+... ......-.....++.++..+.++  +..+
T Consensus       113 ~~i~~-~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v  189 (458)
T d1ibrb_         113 AGIAC-AEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV  189 (458)
T ss_dssp             HHHHH-HHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHH
T ss_pred             HHHHH-HhCCcc--cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHH
Confidence            55544 111110  0125678888888664  567788888888887732 12111111233567777777654  5678


Q ss_pred             HHHHHHHHHHhhcChhhH--HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc
Q 047123          305 QSHAVGAIRNIAAVEDIK--AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD  382 (579)
Q Consensus       305 ~~~a~~aL~nLs~~~~~~--~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~  382 (579)
                      +..++.++.++.......  .........+.+...+.+.+++++..++.+|..++...+..-...........+.....+
T Consensus       190 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~  269 (458)
T d1ibrb_         190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  269 (458)
T ss_dssp             HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999998886532211  111222345667777888899999999999999876433211011112222333444444


Q ss_pred             CCCChHHHHHHHHHHHHcccchh-----------------------HHHHHhhcCcHHHHHHHHHhc-------CCHHHH
Q 047123          383 STSSIVTVENALLAISSLSLSDS-----------------------AARILSSTTSFIIQLGEFIKR-------GNVLLQ  432 (579)
Q Consensus       383 ~~~~~~~~~~A~~aL~~L~~~~~-----------------------~~~l~~~~~g~i~~L~~lL~~-------~~~~v~  432 (579)
                      ..  +.++..++..+..++....                       ......   ...+.+...+..       .+..++
T Consensus       270 ~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~  344 (458)
T d1ibrb_         270 DI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ---YLVPILTQTLTKQDENDDDDDWNPC  344 (458)
T ss_dssp             SS--HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH---HHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred             cc--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHH---HHhhhHHhhhhcchhhhccccccHH
Confidence            44  3788888888888765411                       011111   233444444422       233578


Q ss_pred             HHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC--cchhHHHhhcccHHHHHhhcC
Q 047123          433 QVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVR--SNRKELVRDEKSVMRLMQMLD  507 (579)
Q Consensus       433 ~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~  507 (579)
                      ..+..++..++  ..++    +.+. ++.+...+ .+++..+|+.|+.+|+.++...  ...+.++  ...++.+++++.
T Consensus       345 ~~a~~~l~~l~~~~~~~----~~~~l~~~i~~~l-~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~  417 (458)
T d1ibrb_         345 KAAGVCLMLLATCCEDD----IVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK  417 (458)
T ss_dssp             HHHHHHHHHHHHHTTTT----HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhccHh----hhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhC
Confidence            88888888888  2222    2333 66777788 6778999999999999998532  2223333  457788999999


Q ss_pred             CCchhhhhHHHHHHHHHHhC
Q 047123          508 PKNEALNKKFPVMVTAAVLG  527 (579)
Q Consensus       508 ~~~~~~~k~~av~~L~~L~~  527 (579)
                      ++++. ++..|+.++..++.
T Consensus       418 d~~~~-VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         418 DPSVV-VRDTAAWTVGRICE  436 (458)
T ss_dssp             CSCHH-HHHHHHHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHHHHHH
Confidence            88877 89999999988864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-06  Score=87.02  Aligned_cols=312  Identities=11%  Similarity=0.045  Sum_probs=189.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC--CCHHHHHHHHHHHHHhhccChhhHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH--HQSSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~--~~~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ...++..+.+.+. .+..++..+..++......   -.-.+.++.+++.+. +  .+...++.++.++..++........
T Consensus        91 ~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~  165 (458)
T d1ibrb_          91 KNYVLQTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQL  165 (458)
T ss_dssp             HHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHH-hhcchHHHHHHHHHHHHHHHhhccchhh
Confidence            3445666665543 2334445554443211000   001357888888876 4  3467788888888887752222211


Q ss_pred             HHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccH--HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          242 IVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPENA--WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      .-.....++.++..+.+.  +.+++..+..++.++.......  .........+.+...+.+++++++..++.+|..+..
T Consensus       166 ~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  245 (458)
T d1ibrb_         166 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  245 (458)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            111223577788888754  6789999999999988543211  112223356677788888999999999999988865


Q ss_pred             -ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH--------------------HHHhcCcHHHH
Q 047123          318 -VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRL--------------------LIIQERGLQRL  376 (579)
Q Consensus       318 -~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~--------------------~l~~~g~i~~L  376 (579)
                       .+..-.........+.+...+.+.++.++..++..+..++........                    ...-....+.+
T Consensus       246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  325 (458)
T d1ibrb_         246 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  325 (458)
T ss_dssp             HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence             222111111122234445556788889999999998888642211000                    00011223444


Q ss_pred             HHhhccCC-----CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Chhh-
Q 047123          377 MHLIQDST-----SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGN-  448 (579)
Q Consensus       377 v~ll~~~~-----~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~-  448 (579)
                      ...+....     .....+..+..++..++.... ..++.   .+++.+...+++.+..+|..|..+|..++.  .++. 
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~---~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~  401 (458)
T d1ibrb_         326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL  401 (458)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred             HhhhhcchhhhccccccHHHHHHHHHHHHHHhcc-Hhhhh---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHH
Confidence            44432211     122577888888888876511 11222   356667777888999999999999999983  2232 


Q ss_pred             HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          449 KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       449 ~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      +..+.+.++.++..+ .++++.||..|+.+|+.++..
T Consensus       402 ~~~l~~i~~~l~~~l-~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         402 KPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             CTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHH
Confidence            223333389999999 778899999999999998753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=3.4e-05  Score=84.27  Aligned_cols=331  Identities=11%  Similarity=0.128  Sum_probs=195.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE  245 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~  245 (579)
                      .+...+.+.++..+..|+..+..++.........-.-...++.++..+. ++++.+|..++.+++.++..   ....+..
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~vr~~a~~~l~~l~~~---~~~~~~~  448 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADS---VAESIDP  448 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH---HGGGSCT
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhc-CcchhhhhHHHHHHHHHHHH---hchhhhh
Confidence            3344556778889999999999988654443333233457899999999 99999999999999998762   1112222


Q ss_pred             cCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcC--CCccHHHH--HhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhh
Q 047123          246 EGGLGPLLRILE---TGSMPLKEKAAIGVEAITT--DPENAWAI--SAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIA  316 (579)
Q Consensus       246 ~g~l~~Lv~lL~---~~~~~v~~~aa~~L~~Ls~--~~~~~~~i--~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs  316 (579)
                      ...++.++..+.   ..++.++..+++++..+..  .+.....+  .....+..++.....  .+..++..+..++..+.
T Consensus       449 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            233444444332   2467778888888777752  11111111  112244555655543  34567888888887775


Q ss_pred             c--ChhhHHHHHH--cCCHHHHHHHhcCC----C-------HHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhh
Q 047123          317 A--VEDIKAALAE--EGAVPVLVQSLTSS----S-------NLAQENAADCIATLAASGEY-FRLLIIQERGLQRLMHLI  380 (579)
Q Consensus       317 ~--~~~~~~~l~~--~g~v~~Lv~lL~~~----~-------~~v~~~a~~~L~~La~~~~~-~r~~l~~~g~i~~Lv~ll  380 (579)
                      .  .+.....+..  ....+.+...+...    .       ..++..+..++..+....+. ...  .-...++.++..+
T Consensus       529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~l~~~l  606 (861)
T d2bpta1         529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLL  606 (861)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhhhc
Confidence            4  2222222111  11122222222211    1       12344444445444321111 000  0122355566666


Q ss_pred             ccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHH
Q 047123          381 QDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCM  456 (579)
Q Consensus       381 ~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v  456 (579)
                      ...++ ..+++.+..++..++..  +.....+..   +++.+...+++.++.++..|..++..++  ..+.....+.+-+
T Consensus       607 ~~~~~-~~v~~~~l~~l~~l~~~~~~~~~~~l~~---i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~  682 (861)
T d2bpta1         607 EKKDS-AFIEDDVFYAISALAASLGKGFEKYLET---FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM  682 (861)
T ss_dssp             HSTTG-GGTHHHHHHHHHHHHHHHGGGGHHHHHH---HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHH
T ss_pred             ccCCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHH---HhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHH
Confidence            55543 46888999999998876  555566664   8889999999999999999999999998  3344444444448


Q ss_pred             HHHHHhccCC-CCHhHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCC
Q 047123          457 GSLIKLMECP-KPVGLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDP  508 (579)
Q Consensus       457 ~~Lv~lL~~~-~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~  508 (579)
                      +.|++.+++. .+..++..++.+|+.++..- +....++  ...++.+.+.+..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l--~~~~~~l~~~~~~  734 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNT  734 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCc
Confidence            8899988443 35688999999999987542 2223333  2334455555543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=8e-05  Score=81.18  Aligned_cols=310  Identities=12%  Similarity=0.105  Sum_probs=190.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChhhHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      -..++..+.+.++.+|..++.++..++..+ +.+ .   =...++.|++.+. +++ ...+..|+.+|..++...+..-.
T Consensus        97 k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~-~---wpeli~~L~~~~~-s~~~~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1          97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHG-A---WPELMKIMVDNTG-AEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-C---CHHHHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC-c---hHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            345667778889999999999998886422 110 0   0135677788777 544 67888899999998862222111


Q ss_pred             HHHh--cCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccH--HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123          242 IVFE--EGGLGPLLRILET--GSMPLKEKAAIGVEAITTDPENA--WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI  315 (579)
Q Consensus       242 ~i~~--~g~l~~Lv~lL~~--~~~~v~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  315 (579)
                      .+..  ...+..+++.+.+  .+..++..+..++.++...-...  ........++.+...++++++.++..++.++..+
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1111  1234444554433  46889999999999877422111  1111233567788889999999999999999988


Q ss_pred             hcC-hh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----------------cCcHHHHH
Q 047123          316 AAV-ED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ----------------ERGLQRLM  377 (579)
Q Consensus       316 s~~-~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~----------------~g~i~~Lv  377 (579)
                      ... ++ ....+.+ -....+.....+.++.++..++..+..++............                ...++.+.
T Consensus       252 ~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         252 MSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            762 22 2222222 12223344456778899999999988876532221111111                12234455


Q ss_pred             HhhccCC-----CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhH
Q 047123          378 HLIQDST-----SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNK  449 (579)
Q Consensus       378 ~ll~~~~-----~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~  449 (579)
                      ..+....     .....+..+..++..++.. ..  .++.   -..+.+...+.+.+...+..+..++..+.  ..+...
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~  405 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HILE---PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR  405 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--hhhh---hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhH
Confidence            5443322     1124566666666666554 11  1111   13334445567788899999999999998  334444


Q ss_pred             HHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123          450 RAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       450 ~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~  485 (579)
                      ..+.+. ++.+++.+ .+.+..+|..++.+++.++..
T Consensus       406 ~~~l~~~l~~l~~~l-~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         406 TYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-cCcchhhhhHHHHHHHHHHHH
Confidence            444444 89999999 777899999999999998753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=0.00013  Score=72.66  Aligned_cols=274  Identities=13%  Similarity=0.095  Sum_probs=179.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHh-hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123          166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAK-EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF  244 (579)
Q Consensus       166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~  244 (579)
                      .+...+..++.-....+...+..++..........-. ......+-.+.. +++...+..+++++..+.. .+++|..+.
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~-~~~~~~~~i~v~~lq~llr-~~~~R~~fw  203 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQN-IEQMDTCYVCIRLLQELAV-IPEYRDVIW  203 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHC-TTCHHHHHHHHHHHHHHHT-SHHHHHHHH
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhc-ccccchHHHHHHHHHHHhc-CccHHHHHH
Confidence            3445555555555556666666666554443332211 112333334445 7888999999999999999 999999885


Q ss_pred             h--cCCHHHHHHHHccC-----------------CHHHHHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHHhcC-CCH
Q 047123          245 E--EGGLGPLLRILETG-----------------SMPLKEKAAIGVEAITTDPENAWAISAY--GGVSVLIEAFRS-GTA  302 (579)
Q Consensus       245 ~--~g~l~~Lv~lL~~~-----------------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~ll~~-~~~  302 (579)
                      .  ...+++++.+|+..                 ...++..++-+++-|+.+++....+.+.  +.++.|+.+++. .-.
T Consensus       204 ~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KE  283 (477)
T d1ho8a_         204 LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE  283 (477)
T ss_dssp             TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH
T ss_pred             HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence            4  34678888888541                 2467889999999999998888888875  458999998875 456


Q ss_pred             HHHHHHHHHHHHhhcChh------hHHHHHHcCCHHHHHHHhcC--CCHHHHHHHHHH-------HHHHhcCChh-----
Q 047123          303 LTQSHAVGAIRNIAAVED------IKAALAEEGAVPVLVQSLTS--SSNLAQENAADC-------IATLAASGEY-----  362 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~~~~------~~~~l~~~g~v~~Lv~lL~~--~~~~v~~~a~~~-------L~~La~~~~~-----  362 (579)
                      .+.+-++.+|.|+.....      ....++..++.+.+-.+...  .++++.+..-..       +..+++.++.     
T Consensus       284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~  363 (477)
T d1ho8a_         284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD  363 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence            888899999999986421      23345566666554444322  355544432222       1222222211     


Q ss_pred             ---------hH-HHHHhc----------CcHHHHHHhhcc--------CCCChHHHHHHHHHHHHcccc-hh-HHHHHhh
Q 047123          363 ---------FR-LLIIQE----------RGLQRLMHLIQD--------STSSIVTVENALLAISSLSLS-DS-AARILSS  412 (579)
Q Consensus       363 ---------~r-~~l~~~----------g~i~~Lv~ll~~--------~~~~~~~~~~A~~aL~~L~~~-~~-~~~l~~~  412 (579)
                               .+ +.+..+          ..+..|+++|++        .+.++.+...||.=|+.++.. +. +..+-..
T Consensus       364 Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l  443 (477)
T d1ho8a_         364 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT  443 (477)
T ss_dssp             HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             cCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHc
Confidence                     11 223221          246888888863        112246777888889999987 44 4444455


Q ss_pred             cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123          413 TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS  443 (579)
Q Consensus       413 ~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~  443 (579)
                        |+-..+++++.+.+++|+.+|+.++..+-
T Consensus       444 --g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         444 --GGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             --SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             --CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence              88889999999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.17  E-value=1.3e-07  Score=77.13  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123          172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP  251 (579)
Q Consensus       172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~  251 (579)
                      .++++.+|..|+.+|..+.            ...++.|+++|+ ++++.+|..|+.+|+.+..           .+.++.
T Consensus         2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~-d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLS-NEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGG-CSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            4455556666666665442            235888999999 9999999999999988765           346899


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123          252 LLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR  313 (579)
Q Consensus       252 Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  313 (579)
                      |...|++.++.++..++++|..+..          .+.++.|..+++++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998753          346788889999999999999988763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.00028  Score=76.99  Aligned_cols=349  Identities=10%  Similarity=0.039  Sum_probs=205.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC--HHHHHHHHHHHHHhhccChhhHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ--SSIREQAVLALSIIVSANDESRK  241 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~--~~~~~~A~~aL~~La~~~~~~~~  241 (579)
                      ...++..+.+.+. .+..++.++..++..+-....   =.+.++.|++.+. +++  ..+++.++.+|..++.......-
T Consensus        92 k~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~---Wpeli~~L~~~l~-~~~~~~~~~~~~l~~l~~i~~~~~~~~~  166 (876)
T d1qgra_          92 KNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQ---WPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccc---cHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence            3456677766553 455667777777642110000   1367899999886 544  67888999999998762111110


Q ss_pred             HHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHH--HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123          242 IVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPENAW--AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA  317 (579)
Q Consensus       242 ~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~  317 (579)
                      .-.....++.+++.+.+.  +.+++..+..++.+.........  .....-.++.+...+.++++.++..++.++..+..
T Consensus       167 ~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            011124678888888654  57889989888887763221110  11112246777778888999999999999988876


Q ss_pred             -ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH----H----------------HHhcCcHHHH
Q 047123          318 -VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRL----L----------------IIQERGLQRL  376 (579)
Q Consensus       318 -~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~----~----------------l~~~g~i~~L  376 (579)
                       .++.-.........+.+...+.+..+.++..++..+..++........    .                ......++.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  326 (876)
T d1qgra_         247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence             333222222333445566667788888888888887777642211100    0                0011222333


Q ss_pred             HHhhccCC-----CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhH
Q 047123          377 MHLIQDST-----SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNK  449 (579)
Q Consensus       377 v~ll~~~~-----~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~  449 (579)
                      ...+....     ....++..|..++..++.... ..++.   .+++.+...+.+.+...++.+..++..+.  ...+..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~---~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~  402 (876)
T d1qgra_         327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL  402 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHHhh-hhhhh---hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHH
Confidence            33332211     112467777777777665410 01112   24455566677888899999999998887  334443


Q ss_pred             HHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123          450 RAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV  525 (579)
Q Consensus       450 ~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L  525 (579)
                      ..+... ++.++..+ .+.++.++..++.+++.++....+..   ...  ...++.+++.+++ ++. .+..+.+++..+
T Consensus       403 ~~~~~~~~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~-~~~-v~~~~~~~l~~l  477 (876)
T d1qgra_         403 KPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA-EPR-VASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-CHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHHcchhhhhHHHh--hhHHHHHHHHhcC-CHH-HHHHHHHHHHHH
Confidence            444444 89999999 77789999999999999986433211   111  2234556666654 233 444555555554


Q ss_pred             h
Q 047123          526 L  526 (579)
Q Consensus       526 ~  526 (579)
                      .
T Consensus       478 ~  478 (876)
T d1qgra_         478 A  478 (876)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=0.00014  Score=79.54  Aligned_cols=312  Identities=15%  Similarity=0.109  Sum_probs=182.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123          164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV  243 (579)
Q Consensus       164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i  243 (579)
                      ++.+...+.+.++..+..++..+..++.........-.....++.++..+. ++++.++..++.+++.++...+.   ..
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~---~~  443 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPE---AA  443 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGG---GT
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHHHHcch---hh
Confidence            444556667888999988888888887543332222233557889999999 99999999999999999872221   11


Q ss_pred             HhcCC----HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc------------cHHHHHh--cCcHHHHHHHhcCC---CH
Q 047123          244 FEEGG----LGPLLRILETGSMPLKEKAAIGVEAITTDPE------------NAWAISA--YGGVSVLIEAFRSG---TA  302 (579)
Q Consensus       244 ~~~g~----l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~------------~~~~i~~--~g~i~~Lv~ll~~~---~~  302 (579)
                      .....    ++.+...+. .++.++..+++++.++.....            ....+..  ...++.+...+...   ..
T Consensus       444 ~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~  522 (876)
T d1qgra_         444 INDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQN  522 (876)
T ss_dssp             SSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCST
T ss_pred             hhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence            11222    344444443 478889999999988862100            0000110  12455666666542   34


Q ss_pred             HHHHHHHHHHHHhhcC--hhhHHHHHH--cCCHHHHHHHhcCC------CH-----HHHHHHHHHHHHHhcCChhhHHHH
Q 047123          303 LTQSHAVGAIRNIAAV--EDIKAALAE--EGAVPVLVQSLTSS------SN-----LAQENAADCIATLAASGEYFRLLI  367 (579)
Q Consensus       303 ~~~~~a~~aL~nLs~~--~~~~~~l~~--~g~v~~Lv~lL~~~------~~-----~v~~~a~~~L~~La~~~~~~r~~l  367 (579)
                      .++..+..++.++...  .+....+..  .-.++.+...+...      ..     ..+...+.++..+......  ...
T Consensus       523 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~  600 (876)
T d1qgra_         523 NLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDA  600 (876)
T ss_dssp             THHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred             hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcch--hhh
Confidence            5677777777776542  222222221  01222233333211      11     2334444555555432211  111


Q ss_pred             H--hcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 047123          368 I--QERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNL  442 (579)
Q Consensus       368 ~--~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L  442 (579)
                      .  ....++.+.+++.....+..+++.+..++..++..  +.....+.   .+++.+...+++. +++++..|..++..+
T Consensus       601 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~---~ii~~l~~~l~~~~~~~v~~~a~~~l~~l  677 (876)
T d1qgra_         601 LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME---AFKPFLGIGLKNYAEYQVCLAAVGLVGDL  677 (876)
T ss_dssp             HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHH---HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            1  13445666777665544447899999999888765  33333334   3777788888665 577999999999888


Q ss_pred             c--CChhhHHHHHHHHHHHHHhccCCC-CHhHHHHHHHHHHHhhcC
Q 047123          443 S--ISDGNKRAVASCMGSLIKLMECPK-PVGLQEAATDAVLSLLTV  485 (579)
Q Consensus       443 ~--~~~~~~~~i~~~v~~Lv~lL~~~~-~~~v~~~a~~aL~~L~~~  485 (579)
                      +  .......++.+-++.+++.+++.. +..++..++.+++.++..
T Consensus       678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~  723 (876)
T d1qgra_         678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA  723 (876)
T ss_dssp             HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Confidence            7  333344444444889999884333 567899999999988743

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.77  E-value=1.6e-05  Score=64.16  Aligned_cols=87  Identities=21%  Similarity=0.159  Sum_probs=75.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123          163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI  242 (579)
Q Consensus       163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~  242 (579)
                      .++.|+..|.++++.+|..|+.+|+.+..           .+.++.|+.+|+ ++++.+|..|+.+|+.+..        
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~-d~~~~VR~~a~~aL~~i~~--------   82 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLE-DDSGFVRSGAARSLEQIGG--------   82 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhc-cchhHHHHHHHHHHHHhCc--------
Confidence            36789999999999999999999977642           235899999999 9999999999999999876        


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVE  272 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~  272 (579)
                         .+.++.|..+++++++.++..|+.+|.
T Consensus        83 ---~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ---ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ---cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               456888899999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.06  Score=49.99  Aligned_cols=219  Identities=14%  Similarity=0.064  Sum_probs=161.3

Q ss_pred             HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHHh-cCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123          324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR----LLIIQ-ERGLQRLMHLIQDSTSSIVTVENALLAIS  398 (579)
Q Consensus       324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r----~~l~~-~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~  398 (579)
                      .+...+.+..|+..|..=+-+.+..+..+..++-......+    +.+.. ...+..|+..-+.    +++--.+-..|+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~----~eiAl~~G~mLR  139 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES----PEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS----TTTHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC----cchhhhhhHHHH
Confidence            45667888888888888788889999999998876443322    22332 2334444443332    367777888888


Q ss_pred             Hcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHHHHHhccCCCCHhH
Q 047123          399 SLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGSLIKLMECPKPVGL  471 (579)
Q Consensus       399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~Lv~lL~~~~~~~v  471 (579)
                      .+..+ ..+..++..  ..+..+.++++.++-++...|...+..|- .++.....+...     +..+-++| .+++.-.
T Consensus       140 Ecik~e~lak~iL~s--~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL-~s~NYVt  216 (330)
T d1upka_         140 ECIRHEPLAKIILWS--EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVT  216 (330)
T ss_dssp             HHHTSHHHHHHHHHS--GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHH
T ss_pred             HHHhhHHHHHHHHcc--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh-cCCchHH
Confidence            88888 566777887  78899999999999999999999999887 777776666655     67777899 8889999


Q ss_pred             HHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC--hhHHHHHH--HcCchH
Q 047123          472 QEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS--NGCRKRLV--AAGAYQ  544 (579)
Q Consensus       472 ~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~--~~~r~~i~--~~g~~~  544 (579)
                      |..+...|+.+..+..|..   ..+.+...+..++.+|.+.+.. ++-.|..+.--+..++.  ++....++  ....+.
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~-Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~  295 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRN-IQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE  295 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhh-HHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHH
Confidence            9999999999998887755   4666677888999999998877 78888888877776663  23333333  233455


Q ss_pred             HHHhhh
Q 047123          545 HLQKLA  550 (579)
Q Consensus       545 ~L~~L~  550 (579)
                      .|.+..
T Consensus       296 fl~~f~  301 (330)
T d1upka_         296 FLSKFQ  301 (330)
T ss_dssp             HHHHTT
T ss_pred             HHHhCC
Confidence            555554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=1.1  Score=41.22  Aligned_cols=209  Identities=11%  Similarity=0.060  Sum_probs=152.3

Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c----cHHHHHhc-CcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123          243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-E----NAWAISAY-GGVSVLIEAFRSGTALTQSHAVGAIRNIA  316 (579)
Q Consensus       243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~----~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs  316 (579)
                      +..++.+..|+.-|..-+-+.+..++.+..++-... .    ...-+..+ .++..|+.--  +++++--.+-..|+...
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHH
Confidence            344678888899998889999999999988887422 1    22333332 2444444443  45555667777888888


Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHHHH
Q 047123          317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVENA  393 (579)
Q Consensus       317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~~A  393 (579)
                      .++.....+.....+..+.+++..++=++...|..++..+-...+........   +......-.++.+++.  -.+..+
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NY--VtrRqS  220 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS  220 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCch--HHHHHH
Confidence            89999999998888999999999999999999999999987766554444444   3355666778887776  899999


Q ss_pred             HHHHHHcccc-hhHHHHHh--hcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhhHHHHHHH
Q 047123          394 LLAISSLSLS-DSAARILS--STTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS----DGNKRAVASC  455 (579)
Q Consensus       394 ~~aL~~L~~~-~~~~~l~~--~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~----~~~~~~i~~~  455 (579)
                      +..|+.+-.. .+...+..  +++.-+..++.+|++.+..+|..|-.++.-...+    ++....+...
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~N  289 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN  289 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHh
Confidence            9999999876 44333322  1234578899999999999999999998888733    4455555544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.26  E-value=1.2  Score=41.73  Aligned_cols=187  Identities=10%  Similarity=0.045  Sum_probs=113.8

Q ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHH----HhcCCCHHHHHHHHHHHHHHh
Q 047123          290 VSVLIEAFRS----GTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQ----SLTSSSNLAQENAADCIATLA  357 (579)
Q Consensus       290 i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~----lL~~~~~~v~~~a~~~L~~La  357 (579)
                      +..+..++.+    +++.++..+..++.++..    ....+    ....++.+..    ....++.+-...++.+|+|+.
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  200 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG  200 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC
Confidence            3566666654    456666777766666632    11110    0112333333    345667777777888888875


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhccCC-----CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh--cCCHH
Q 047123          358 ASGEYFRLLIIQERGLQRLMHLIQDST-----SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK--RGNVL  430 (579)
Q Consensus       358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~-----~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~--~~~~~  430 (579)
                      .           .+.++.+..++.+..     .+..++..|+.+|++++.... .       .+.+.+..++.  ..+.+
T Consensus       201 ~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p-~-------~v~~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         201 Q-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-R-------KVQEIVLPIFLNVAIKSE  261 (336)
T ss_dssp             C-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-H-------HHHHHHHHHHHCTTSCHH
T ss_pred             C-----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCc-H-------HHHHHHHHHHcCCCCChH
Confidence            3           235778888775431     235789999999999876521 1       12334445553  45789


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCCC
Q 047123          431 LQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDPK  509 (579)
Q Consensus       431 v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~  509 (579)
                      +|..|..+|..--  |...     .+..+...+...++..|.-.....|.+++... +..+.+..   .....+++|.+.
T Consensus       262 vRiaA~~~lm~t~--P~~~-----~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~~~la~---~a~~a~~ll~p~  331 (336)
T d1lsha1         262 LRIRSCIVFFESK--PSVA-----LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAA---ACSVAIKMLGSK  331 (336)
T ss_dssp             HHHHHHHHHHHTC--CCHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHH---HHHHHHTTSCSG
T ss_pred             HHHHHHHHHHhcC--CCHH-----HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcchHHHHH---HHHHHHHHhCcc
Confidence            9998888887643  2211     05667777767788999999999999998753 33333332   234456666554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.02  E-value=0.52  Score=44.53  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhc----C
Q 047123          205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET----GSMPLKEKAAIGVEAIT----T  276 (579)
Q Consensus       205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls----~  276 (579)
                      .+..+.+++. ++..... .|...+..++. ...--..     .+..+..++++    .++.++..+.-++++|.    .
T Consensus        89 a~~~i~~~I~-~~~ls~~-ea~~~l~~l~~-~~~Pt~~-----~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLA-SEQLTSA-EATQIVASTLS-NQQATRE-----SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHH-TTCSCHH-HHHHHHHHHHH-TCCCCHH-----HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-cCCCCHH-HHHHHHHHHhc-cCCCCHH-----HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            5666777776 5553322 34445555554 2221111     24445556654    36778888888887776    2


Q ss_pred             C-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC-------CCHHHHHH
Q 047123          277 D-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS-------SSNLAQEN  348 (579)
Q Consensus       277 ~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-------~~~~v~~~  348 (579)
                      + +.+...+. ......+.+.+..++.+-+..++.+|.|+.. +         +.++.+..++..       ....++..
T Consensus       161 ~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~a  229 (336)
T d1lsha1         161 NTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAE  229 (336)
T ss_dssp             TCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred             CCCCCcHHHH-HHHHHHHHHhhcccchHHHHHHHHHHhccCC-H---------hHHHHHHHHhcccccccccccHHHHHH
Confidence            2 22222111 1122333334456677777778888988753 2         256677777643       24689999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhc-C
Q 047123          349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR-G  427 (579)
Q Consensus       349 a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~-~  427 (579)
                      |+++|.+++..++.        .+.+.+..++.+...+.++|..|..+|...--..          ..+..+...+.. .
T Consensus       230 Ai~Alr~~~~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~----------~~l~~i~~~l~~E~  291 (336)
T d1lsha1         230 AIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSV----------ALVSMVAVRLRREP  291 (336)
T ss_dssp             HHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH----------HHHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhcCcH--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHhCc
Confidence            99999999886643        1245666766666655788888888886642110          356666666644 4


Q ss_pred             CHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhc
Q 047123          428 NVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLM  463 (579)
Q Consensus       428 ~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL  463 (579)
                      +..|.......|.+++  .+|+.+ .+.......+++|
T Consensus       292 ~~QV~sfv~S~l~~la~s~~P~~~-~la~~a~~a~~ll  328 (336)
T d1lsha1         292 NLQVASFVYSQMRSLSRSSNPEFR-DVAAACSVAIKML  328 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSGGGH-HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHh
Confidence            6677778888888888  444444 3333344445555

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.51  E-value=0.016  Score=52.40  Aligned_cols=105  Identities=12%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHH-----HHhhc-cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH-----HHHh
Q 047123          206 VGYLISLLDFHHQSSIREQAVLAL-----SIIVS-ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIG-----VEAI  274 (579)
Q Consensus       206 v~~Lv~LL~~~~~~~~~~~A~~aL-----~~La~-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~-----L~~L  274 (579)
                      +..|..|++ ++++.||..|+..|     ..+.. .+.+.+......-..+.|..++++++..++..++..     |..+
T Consensus        68 ~~~L~~Ll~-D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          68 VEALTPLIR-DSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGGGGTT-CSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHH
Confidence            444555555 55555555554332     11111 011222222222234455666666667776666543     2222


Q ss_pred             cCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123          275 TTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA  311 (579)
Q Consensus       275 s~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a  311 (579)
                      ..+  ++.+..++..-+.+.|..++++.++.++..++..
T Consensus       147 ~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            222  2334444443344556666666677676666543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.86  E-value=0.028  Score=50.69  Aligned_cols=59  Identities=12%  Similarity=-0.009  Sum_probs=33.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH-----HHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHH
Q 047123          418 IQLGEFIKRGNVLLQQVSSSLL-----GNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATD  477 (579)
Q Consensus       418 ~~L~~lL~~~~~~v~~~A~~aL-----~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~  477 (579)
                      +.|..++++.++.|+..++..+     ..+.  .+...|....+. .+.+++.| .++++.||+.+.+
T Consensus       165 ~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~~~~~ll~~L-~D~d~~VR~aA~~  231 (233)
T d1lrva_         165 ESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALREL-DEPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred             HHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHhccHHHHHHh-CCCCHHHHHHHHH
Confidence            3455556667777777666542     2333  344555555555 45556666 5556666666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.25  E-value=7.2  Score=36.26  Aligned_cols=179  Identities=17%  Similarity=0.167  Sum_probs=107.2

Q ss_pred             HHHHhccCCH-HHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhcc---C-----C--CHHHHHHHHHHHHHhhc
Q 047123          167 IFTRLQIGGV-EFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDF---H-----H--QSSIREQAVLALSIIVS  234 (579)
Q Consensus       167 Lv~~L~~~~~-~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~---~-----~--~~~~~~~A~~aL~~La~  234 (579)
                      .|..|+++-. +.....+..|.--.+.++ .....+ ..+|+..|+.+|..   .     +  +...+..+++||..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            3444555432 333444555544344333 445555 45677778877631   1     1  25577789999999998


Q ss_pred             cChhhHHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC---ccHH----------HHHhcCcHHHHHHHhcCC
Q 047123          235 ANDESRKIV-FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP---ENAW----------AISAYGGVSVLIEAFRSG  300 (579)
Q Consensus       235 ~~~~~~~~i-~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~---~~~~----------~i~~~g~i~~Lv~ll~~~  300 (579)
                       +..+...+ -..+++..++..|.+....++..|..+|..++..+   +...          ...+.+-...+++.+.++
T Consensus        86 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          86 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence             66655554 45679999999999999999999999999998432   2121          122334567777777664


Q ss_pred             -CHHHHHHHHHHHHHhhcCh-h------hHHHHHHcCCHHHHHHHhcCCCHHHHH
Q 047123          301 -TALTQSHAVGAIRNIAAVE-D------IKAALAEEGAVPVLVQSLTSSSNLAQE  347 (579)
Q Consensus       301 -~~~~~~~a~~aL~nLs~~~-~------~~~~l~~~g~v~~Lv~lL~~~~~~v~~  347 (579)
                       +.+.+..+...+-.+.... +      .|..+...|..+.+-.+=..+++.+..
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence             4455555555554444432 2      255566677655544443444554433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=8.8  Score=35.59  Aligned_cols=143  Identities=15%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             cCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123          287 YGGVSVLIEAFRS-----------GTALTQSHAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIA  354 (579)
Q Consensus       287 ~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~  354 (579)
                      .+|+..|+.+|..           .+...+..++.||+.+..+......+. ...++..++..+.+....++..|...|.
T Consensus        44 ~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~  123 (343)
T d2bnxa1          44 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  123 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            4567777776641           124578889999999988777666555 6678999999999999999999999999


Q ss_pred             HHhcCC--hhhHHHH----------HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--------hhHHHHHhhcC
Q 047123          355 TLAASG--EYFRLLI----------IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--------DSAARILSSTT  414 (579)
Q Consensus       355 ~La~~~--~~~r~~l----------~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~~~~~  414 (579)
                      .+|...  +.....+          .+.+-...++..++.... .+.+..+...+..+..+        ..+..+...  
T Consensus       124 ~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~-~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~--  200 (343)
T d2bnxa1         124 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELMRL--  200 (343)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT--
T ss_pred             HHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcccc-HHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHC--
Confidence            998532  2222222          223455777777766543 46777777777777765        235566666  


Q ss_pred             cHHHHHHHHHhcCCHHHH
Q 047123          415 SFIIQLGEFIKRGNVLLQ  432 (579)
Q Consensus       415 g~i~~L~~lL~~~~~~v~  432 (579)
                      |+.+.+-.+=..+++.+.
T Consensus       201 Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         201 GLHQVLQELREIENEDMK  218 (343)
T ss_dssp             THHHHHHHHTTCCCHHHH
T ss_pred             ChHHHHHHHHccCChHHH
Confidence            665554444334454443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=1.3  Score=35.95  Aligned_cols=77  Identities=16%  Similarity=0.042  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHhhc
Q 047123          161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDF-----HHQSSIREQAVLALSIIVS  234 (579)
Q Consensus       161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~-----~~~~~~~~~A~~aL~~La~  234 (579)
                      ...++.+..+|+++++.++..|+..|-.+... ++.....+.+.+++..|++++..     ..+..+++..+..|..-+.
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            34688899999999999999999999888876 57778888899999999999851     2467899999999887766


Q ss_pred             cCh
Q 047123          235 AND  237 (579)
Q Consensus       235 ~~~  237 (579)
                      ..+
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.82  E-value=23  Score=36.90  Aligned_cols=307  Identities=12%  Similarity=0.064  Sum_probs=146.9

Q ss_pred             HHHHHHHHhcc---CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123          163 FIRDIFTRLQI---GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES  239 (579)
Q Consensus       163 ~v~~Lv~~L~~---~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~  239 (579)
                      +...+...+..   ..+..|..++..+...+......  .  -...++.++.+|. ++++.++..|+.++..+.......
T Consensus       456 l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~--~--~~~~~~~l~~~L~-~~~~~V~~~a~~al~~~~~~~~~~  530 (959)
T d1wa5c_         456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA--Q--LIELMPILATFLQ-TDEYVVYTYAAITIEKILTIRESN  530 (959)
T ss_dssp             HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH--H--HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred             HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH--H--HHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHhhccc
Confidence            33334444443   35678888999998887643322  1  2356889999999 999999999999999987621111


Q ss_pred             --------HHHHH--hcCCHHHHHHHHccCC-HH----HHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc----C
Q 047123          240 --------RKIVF--EEGGLGPLLRILETGS-MP----LKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR----S  299 (579)
Q Consensus       240 --------~~~i~--~~g~l~~Lv~lL~~~~-~~----v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~----~  299 (579)
                              ...+.  -...+..++..+.... ..    ..+....++..+.. ..+....+. ...++.|...+.    +
T Consensus       531 ~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~  609 (959)
T d1wa5c_         531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKN  609 (959)
T ss_dssp             SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTS
T ss_pred             ccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence                    00000  0122444555553321 11    12334455554431 111100000 113344444332    2


Q ss_pred             -CCHHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 047123          300 -GTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRL  376 (579)
Q Consensus       300 -~~~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~L  376 (579)
                       .++........++..+..  +++....+ ....+|.+...+..........+...+..+....+.....+  ....+.+
T Consensus       610 ~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~l  686 (959)
T d1wa5c_         610 PSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESI--KPLAQPL  686 (959)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTT--GGGHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHH--HHHHHHH
Confidence             245566666667766643  34444333 34567777777766555555566665555543211100000  1123333


Q ss_pred             HHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHH
Q 047123          377 MHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVAS  454 (579)
Q Consensus       377 v~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~  454 (579)
                      +........  .........+.+......  .......+.+..+..++.....+  ..+...+..+.  ...+....+.+
T Consensus       687 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~--~~~~~ll~~ii~~~~~~~~~~~l~  760 (959)
T d1wa5c_         687 LAPNVWELK--GNIPAVTRLLKSFIKTDS--SIFPDLVPVLGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIK  760 (959)
T ss_dssp             TSGGGGCCT--TTHHHHHHHHHHHHHHHG--GGCSCSHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred             hhHHHHHHh--hhHHHHHHHHHHHHHhCH--HhhcchHHHHHHHHHHHCCCcch--HHHHHHHHHHHHHCchhhhHhHHH
Confidence            322222222  233444444444433200  00000012344444455443332  34555555554  22222222333


Q ss_pred             H-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          455 C-MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       455 ~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      . +..+++.+...+...+....+..++.++.
T Consensus       761 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  791 (959)
T d1wa5c_         761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISN  791 (959)
T ss_dssp             HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3 66677767556666666666666666653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.44  E-value=31  Score=35.88  Aligned_cols=177  Identities=18%  Similarity=0.151  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHHh--c
Q 047123          301 TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF--------RLLIIQ--E  370 (579)
Q Consensus       301 ~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~--------r~~l~~--~  370 (579)
                      ...++..+++++...+.... ...+  ...++.++..|.+.+..++..|+.++..++......        ...+..  .
T Consensus       471 ~~~lr~~~~~~i~~~~~~~~-~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         471 HIILRVDAIKYIYTFRNQLT-KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             CHHHHHHHHHHHHHTGGGSC-HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             hHHHHHHHHHHHHHHHhhcc-HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            45678888888877765321 1111  236788899999999999999999999997532110        000000  1


Q ss_pred             CcHHHHHHhhccCCCChH---HHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHH----hc-CCHHHHHHHHHHHH
Q 047123          371 RGLQRLMHLIQDSTSSIV---TVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFI----KR-GNVLLQQVSSSLLG  440 (579)
Q Consensus       371 g~i~~Lv~ll~~~~~~~~---~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL----~~-~~~~v~~~A~~aL~  440 (579)
                      ..+..++..+........   ..+....++..+...  +.......   ..++.|...+    ++ .++........++.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~  624 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP---QLLAQFIEIVTIMAKNPSNPRFTHYTFESIG  624 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH---HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            234555555544332111   123355555555433  11111111   1333343333    22 24555566666677


Q ss_pred             Hhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123          441 NLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT  484 (579)
Q Consensus       441 ~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~  484 (579)
                      .+.  .+++....+.+. +|.+...+ ..+.......+...+..+..
T Consensus       625 ~l~~~~~~~~~~~l~~~l~p~i~~~~-~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         625 AILNYTQRQNLPLLVDSMMPTFLTVF-SEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHTSCGGGHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHH
Confidence            665  556666667666 88888888 44445556667776666654