Citrus Sinensis ID: 047127

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
MAPSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFTH
cccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccEEEccEEEccccccEEEEEEEEEEEEccccccEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHcccHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEcccEEEEEEEccccEEEEEcccccccccEEEEcccccEEEEEccccccccccEEEcccHHccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MAPSSSIQFIDTalwcttpfrlsyadpnqKWLIRKQLLSLLqnypsfnlsndtfthndgtavnLFKVsgcfhvsqstppihFTLWLhenypsmapmafivssnsmypirqnhpfvspcgtittpylqtwsypgynlndLVHNLVQIfshdhpliyystessftrtSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNwlkvngdpkaiGVILGDRVEDAFEAIDAESKaelegsaaDEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFTH
MAPSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELagkadvltnwlkvngdPKAIGVILGDRVEDAFEAIDAESkaelegsaadEAIEDVIYALDKALERGVVSFDSYIRQVRILAreqffhrdllvklevkrgfth
MAPSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGalqarteeetealltIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFTH
******IQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAID************DEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVK*****
*****SI*FIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNS**PI******VSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH*****************************************************************************************************AFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRG***
********FIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFTH
**PSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPK*IGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKR****
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MAPSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIxxxxxxxxxxxxxxxxxxxxxADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFTH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query322 2.2.26 [Sep-21-2011]
Q9FFY6368 Protein ELC-like OS=Arabi no no 0.916 0.801 0.375 1e-48
Q9LHG8398 Protein ELC OS=Arabidopsi no no 0.928 0.751 0.344 2e-44
Q66KB7 476 Ubiquitin-conjugating enz yes no 0.422 0.285 0.285 8e-10
Q99816390 Tumor susceptibility gene yes no 0.468 0.387 0.297 4e-07
Q61187391 Tumor susceptibility gene yes no 0.397 0.327 0.272 4e-07
Q6IRE4391 Tumor susceptibility gene yes no 0.397 0.327 0.272 4e-07
Q8IX04 471 Ubiquitin-conjugating enz no no 0.354 0.242 0.283 3e-06
Q3U1V6 471 Ubiquitin-conjugating enz no no 0.391 0.267 0.280 9e-06
Q54LJ3478 ESCRT-I complex subunit t yes no 0.276 0.186 0.32 9e-06
Q6DBY5 471 Ubiquitin-conjugating enz no no 0.409 0.280 0.257 4e-05
>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1 Back     alignment and function desciption
 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 184/338 (54%), Gaps = 43/338 (12%)

Query: 8   QFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKV 67
           QF+ +AL    P  L YA+ N K LIR+ LL+L+ +Y S +    TFTHNDG +V L + 
Sbjct: 13  QFLSSALTQRGPSALPYAE-NTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVILLQA 71

Query: 68  SGCF-----HVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTIT 122
            G        VS + P     +WL E+YP   P  ++  +  M  I++ H  VSP G ++
Sbjct: 72  DGTIPMPFQGVSYNIP---VVIWLLESYPQYPPCVYVNPTRDMI-IKRPHSNVSPSGLVS 127

Query: 123 TPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTE---------SSFTR--------- 164
            PYLQ W YP  NL DL  +L   FS D PL               S ++R         
Sbjct: 128 LPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQPSPSIGSGYSRPLPPRQTDD 187

Query: 165 TSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKL----KETVVE- 219
            + V K+ A++R   M+H D+  +++  E ETE LL++Q +LK R  ++    KE V+E 
Sbjct: 188 AAEVYKKNAINRIVEMVHGDIVLMRSAREVETEGLLSLQSDLKRREEEINNGFKEMVIEK 247

Query: 220 ---------LAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADE 270
                    +A   DVL +W++ N   KA  +++   V+D+FE ID+ SK  LE +A D 
Sbjct: 248 ETLEQQLQVIAMNTDVLGSWIRENQG-KAKDLLVDLDVDDSFECIDSLSKQMLECTALDL 306

Query: 271 AIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHR 308
           AIEDV+Y++DK+   G + FD Y+R VR+L+REQFFHR
Sbjct: 307 AIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFHR 344
Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1 Back     alignment and function description
>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1 Back     alignment and function description
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2 Back     alignment and function description
>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2 Back     alignment and function description
>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1 Back     alignment and function description
>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2 Back     alignment and function description
>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=2 SV=1 Back     alignment and function description
>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1 Back     alignment and function description
>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
255559905338 conserved hypothetical protein [Ricinus 0.959 0.914 0.570 3e-96
225437186336 PREDICTED: protein ELC-like [Vitis vinif 0.968 0.928 0.527 1e-92
147845360355 hypothetical protein VITISV_027819 [Viti 0.931 0.845 0.514 9e-86
224066317319 predicted protein [Populus trichocarpa] 0.885 0.893 0.542 3e-82
297823771333 hypothetical protein ARALYDRAFT_903122 [ 0.940 0.909 0.438 1e-68
42569747331 Ubiquitin-conjugating enzyme/RWD-like pr 0.909 0.885 0.437 2e-67
224057212380 predicted protein [Populus trichocarpa] 0.944 0.8 0.353 4e-47
15240732368 protein ELC-like protein [Arabidopsis th 0.916 0.801 0.375 7e-47
225453537364 PREDICTED: protein ELC-like [Vitis vinif 0.925 0.818 0.338 6e-46
118489418403 unknown [Populus trichocarpa x Populus d 0.944 0.754 0.337 3e-45
>gi|255559905|ref|XP_002520971.1| conserved hypothetical protein [Ricinus communis] gi|223539808|gb|EEF41388.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 230/333 (69%), Gaps = 24/333 (7%)

Query: 1   MAPSSSIQFIDTALWCT-TPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDG 59
           MAPSSSIQFIDTAL CT TP+ LSY DP QKW+IRK LLSL+ +YP+F  S DTF HNDG
Sbjct: 1   MAPSSSIQFIDTALSCTSTPYALSYPDPKQKWIIRKHLLSLIIDYPTFKPSTDTFFHNDG 60

Query: 60  TAVNLFKVSGCFHVSQS--TPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP 117
           TAV L   +G  H++ S  TPP+  T+W+HENYP M P+  +  ++SM PI QNHPFV P
Sbjct: 61  TAVYLLNAAGNLHLAGSKYTPPVPLTIWVHENYPYMPPIVVVSPNDSMSPIHQNHPFVDP 120

Query: 118 -CGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSFTRTSLVSKREALDR 176
             G  ++PYLQTW +P  NL +LV NLV+IFSHDHP +  S  SS T  SLVSK EALDR
Sbjct: 121 YSGATSSPYLQTWIFPRCNLTELVRNLVKIFSHDHPFLTPSPSSSLTHPSLVSKMEALDR 180

Query: 177 FSGMLHYDMGALQARTEEETEALLTIQVELKNR---ARK-----------LKETVVELAG 222
            SG +HYD  AL+A+ EEE E L ++QVEL  R   AR            LKE   EL  
Sbjct: 181 LSGTIHYDKIALKAKNEEEMEGLSSLQVELMKRNHVARNMIISLEKERGSLKERATELME 240

Query: 223 KADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKA 282
           +ADV+ NWL+VN        I GD +EDAFE  D ES++ ++  AA+ AIEDVIYALDKA
Sbjct: 241 QADVVMNWLRVND-----VTIEGDGMEDAFEGDDEESRSVIDCLAAERAIEDVIYALDKA 295

Query: 283 LERGVV-SFDSYIRQVRILAREQFFHRDLLVKL 314
           +E G V  FD+Y+RQVR+LAREQF+HR  LVKL
Sbjct: 296 VEEGAVPCFDAYLRQVRLLAREQFYHRARLVKL 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437186|ref|XP_002274974.1| PREDICTED: protein ELC-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845360|emb|CAN83353.1| hypothetical protein VITISV_027819 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066317|ref|XP_002302080.1| predicted protein [Populus trichocarpa] gi|222843806|gb|EEE81353.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297823771|ref|XP_002879768.1| hypothetical protein ARALYDRAFT_903122 [Arabidopsis lyrata subsp. lyrata] gi|297325607|gb|EFH56027.1| hypothetical protein ARALYDRAFT_903122 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569747|ref|NP_181417.2| Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana] gi|330254498|gb|AEC09592.1| Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224057212|ref|XP_002299175.1| predicted protein [Populus trichocarpa] gi|222846433|gb|EEE83980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15240732|ref|NP_196890.1| protein ELC-like protein [Arabidopsis thaliana] gi|75170327|sp|Q9FFY6.1|ELCL_ARATH RecName: Full=Protein ELC-like; AltName: Full=ESCRT-I complex subunit VPS23 homolog 2; AltName: Full=Vacuolar protein sorting-associated protein 23 homolog 2 gi|10177652|dbj|BAB11114.1| unnamed protein product [Arabidopsis thaliana] gi|332004568|gb|AED91951.1| protein ELC-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225453537|ref|XP_002275919.1| PREDICTED: protein ELC-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489418|gb|ABK96512.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
TAIR|locus:2040394331 AT2G38830 "AT2G38830" [Arabido 0.919 0.894 0.427 5.5e-61
TAIR|locus:2159113368 ELC-Like "ELCH-like" [Arabidop 0.437 0.383 0.410 5.3e-45
TAIR|locus:2092477398 ELC [Arabidopsis thaliana (tax 0.453 0.366 0.397 6.7e-45
WB|WBGene00015658 425 tsg-101 [Caenorhabditis elegan 0.406 0.308 0.259 1e-14
UNIPROTKB|O76258 425 tsg-101 "Protein TSG-101" [Cae 0.406 0.308 0.259 1e-14
RGD|3909391 Tsg101 "tumor susceptibility g 0.388 0.319 0.271 7e-14
UNIPROTKB|Q99816390 TSG101 "Tumor susceptibility g 0.391 0.323 0.253 1.2e-13
FB|FBgn0036666408 TSG101 "tumor suppressor prote 0.369 0.291 0.274 6.1e-13
ZFIN|ZDB-GENE-051127-21185 zgc:123278 "zgc:123278" [Danio 0.394 0.686 0.287 1.7e-10
DICTYBASE|DDB_G0286797478 tsg101 "tumor susceptibility g 0.329 0.221 0.306 1.4e-09
TAIR|locus:2040394 AT2G38830 "AT2G38830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 139/325 (42%), Positives = 196/325 (60%)

Query:     4 SSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVN 63
             SS ++FI+ AL  T  F LSY DP+QKWLIRK L SLLQ+YP+F LS DTF HN+G  V 
Sbjct:     8 SSQVKFIEKALLATGSFALSYTDPDQKWLIRKHLTSLLQDYPNFELSTDTFNHNNGAKVQ 67

Query:    64 LFKVSGCFHVSQST---PPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGT 120
             LF + G   +  ST   P +  T+W+HENYP   P+ FI + NS+ PIR NHPF++  G 
Sbjct:    68 LFCLEGSLRIRSSTTQLPTVQLTIWIHENYPLTPPLVFI-NPNSI-PIRNNHPFINSSGY 125

Query:   121 ITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSF-TRTSLVSKREALDRFSG 179
               + Y++TW +P  NL D + NL ++ ++DHP ++  T+S   TR   VS+ EALDR + 
Sbjct:   126 TKSRYIETWEHPRCNLLDFIRNLKKVLANDHPFLH--TDSLIPTRNQSVSRTEALDRLAT 183

Query:   180 MLHYDMGXXXXXXXXXXXXXXXIQVELKNRARKLKETVVEL----------AGK----AD 225
              LHYD+                +Q E+K R+  +K  + EL          A K    +D
Sbjct:   184 SLHYDVLTIMERSEEEIENLWKLQSEVKQRSESVKSIITELEIERGTLKVRALKLKEDSD 243

Query:   226 VLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALER 285
             VLT W+++N   K   + +G R+E+ FE      ++E+EG A D+AIEDV+  L++A ER
Sbjct:   244 VLTTWVEMNY-LKLTSMDMG-RIEEMFEI-----ESEVEGLAGDDAIEDVLRVLEEAAER 296

Query:   286 GVVSFDSYIRQVRILAREQFFHRDL 310
             G +   SY++QVR+LAREQFF + L
Sbjct:   297 GELEIGSYLKQVRVLAREQFFLKHL 321
GO:0003674 "molecular_function" evidence=ND
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
TAIR|locus:2159113 ELC-Like "ELCH-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092477 ELC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00015658 tsg-101 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O76258 tsg-101 "Protein TSG-101" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|3909 Tsg101 "tumor susceptibility gene 101" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99816 TSG101 "Tumor susceptibility gene 101 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0036666 TSG101 "tumor suppressor protein 101" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051127-21 zgc:123278 "zgc:123278" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286797 tsg101 "tumor susceptibility gene 101 protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
pfam05743119 pfam05743, UEV, UEV domain 1e-23
pfam0945465 pfam09454, Vps23_core, Vps23 core domain 4e-19
smart00212145 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, 3e-04
>gnl|CDD|203324 pfam05743, UEV, UEV domain Back     alignment and domain information 
 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 33  IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPPIHF---------T 83
               L+++L+ +P+     D FT NDG++  L  + G       T P+ +          
Sbjct: 1   TFHDLVNVLRKFPNLRPRTDVFTFNDGSSKLLLNLYG-------TIPVTYRGNTYNIPIL 53

Query: 84  LWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNL 143
           +WL + YP   P+ F+  +  M  I+ NH  V   G +  PYL  W++P  NL DLV  L
Sbjct: 54  IWLPDTYPFSPPICFVKPTPDMV-IKVNH-HVDAQGRVYLPYLHNWNHPSSNLVDLVQEL 111

Query: 144 VQIFSHD 150
            Q+F  +
Sbjct: 112 AQVFGEE 118

This family includes the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other human malignancies. However, the involvement of this gene in neoplastic transformation and tumorigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but that this gene is not a tumour suppressor for sporadic forms of breast cancer. This family is related to the ubiquitin conjugating enzymes. Length = 119
>gnl|CDD|117992 pfam09454, Vps23_core, Vps23 core domain Back     alignment and domain information
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 322
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 100.0
PF05743121 UEV: UEV domain; InterPro: IPR008883 The N-termina 100.0
PF0945465 Vps23_core: Vps23 core domain; InterPro: IPR017916 99.96
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 99.09
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 98.87
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 98.74
PLN00172147 ubiquitin conjugating enzyme; Provisional 98.68
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 98.65
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 98.53
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 98.42
KOG0422153 consensus Ubiquitin-protein ligase [Posttranslatio 98.37
KOG0424158 consensus Ubiquitin-protein ligase [Posttranslatio 98.36
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 98.22
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 98.09
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 97.61
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 97.42
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 97.23
PF14461133 Prok-E2_B: Prokaryotic E2 family B 97.2
KOG08951101 consensus Ubiquitin-conjugating enzyme [Posttransl 96.61
KOG0427161 consensus Ubiquitin conjugating enzyme [Posttransl 96.32
KOG0425171 consensus Ubiquitin-protein ligase [Posttranslatio 95.66
KOG0426165 consensus Ubiquitin-protein ligase [Posttranslatio 93.62
KOG0895 1101 consensus Ubiquitin-conjugating enzyme [Posttransl 88.25
KOG0423223 consensus Ubiquitin-protein ligase [Posttranslatio 88.17
PF07200150 Mod_r: Modifier of rudimentary (Mod(r)) protein; I 87.88
KOG0429258 consensus Ubiquitin-conjugating enzyme-related pro 87.48
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 87.44
KOG0896138 consensus Ubiquitin-conjugating enzyme E2 [Posttra 85.16
KOG0897122 consensus Predicted ubiquitin-conjugating enzyme [ 81.36
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-79  Score=567.27  Aligned_cols=303  Identities=30%  Similarity=0.456  Sum_probs=271.8

Q ss_pred             hHHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeE
Q 047127            5 SSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHF   82 (322)
Q Consensus         5 ~v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi   82 (322)
                      ++.+|.+.++..      .|.+.   |+.++|.+++++.|++|+|+|++|+|+||++++||.++||||+.  |++|||||
T Consensus         2 a~~q~~~~~~~~------~~~~~---~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnIPV   72 (365)
T KOG2391|consen    2 AVSQRQPKVIPY------IYNYK---DLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIPVPYQGVTYNIPV   72 (365)
T ss_pred             cccccccceecc------cccch---hhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcccccccCCcccceE
Confidence            467888888876      57764   45589999999999999999999999999999999999999999  99999999


Q ss_pred             EEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCCCcCCC----
Q 047127           83 TLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYST----  158 (322)
Q Consensus        83 ~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl~~~pp----  158 (322)
                      +|||+++||+.||+|||+ ||++|.|+. |.|||+||+||+|||++|.+|+|||++||++|...|+++||+|+++-    
T Consensus        73 ~iWlldtyP~~pP~c~Vn-PT~~M~ik~-~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~~~p  150 (365)
T KOG2391|consen   73 IIWLLDTYPYYPPICYVN-PTSTMIIKV-HEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLPSPP  150 (365)
T ss_pred             EEEecccCCCCCCeEEec-CCchhhhHH-hhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCccccCCCCCCC
Confidence            999999999999999999 999999988 49999999999999999999999999999999999999999998631    


Q ss_pred             CC------------C---------CC-C-------------------C-----chhhhHHHHHHHHHHHHHHHHHHHHHh
Q 047127          159 ES------------S---------FT-R-------------------T-----SLVSKREALDRFSGMLHYDMGALQART  192 (322)
Q Consensus       159 ~p------------~---------p~-~-------------------p-----~~~~~~~l~~~~~~~L~~~l~~~~~~~  192 (322)
                      +|            |         |+ .                   |     ..++++++++++.++++++.++.+++.
T Consensus       151 ~p~p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasvisa~~eklR~r~eeeme~~  230 (365)
T KOG2391|consen  151 PPYPQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASVISAVREKLRRRREEEMERL  230 (365)
T ss_pred             CCCCcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            10            0         00 0                   0     012467899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCC-CcccccccCChhHHHHHH
Q 047127          193 EEETEALLTIQVELKNRA-------RKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGD-RVEDAFEAIDAESKAELE  264 (322)
Q Consensus       193 ~~e~~~L~~~q~~L~~~~-------~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~-dide~v~~~~~l~~QLle  264 (322)
                      .+++++|.+..++|+.++       +.||++.+.|+.++++|+.|++|+-++   ++..++ |+|+++++++++++|+++
T Consensus       231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~---~~n~~~~~~D~~~~~~~~l~kq~l~  307 (365)
T KOG2391|consen  231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK---AENLEALDIDEAIECTAPLYKQILE  307 (365)
T ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hccCcCCCchhhhhccchHHHHHHH
Confidence            999999999988887776       668888888999999999999995433   333345 999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047127          265 GSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT  321 (322)
Q Consensus       265 l~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~gl~  321 (322)
                      ++|+|.||||+||+|+++|++|+|+||.|||+||.||||||++||+++||++.+|+.
T Consensus       308 ~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r~~~~l~  364 (365)
T KOG2391|consen  308 CYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCRQTAGLA  364 (365)
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999999999999999999999999999999999985

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub) Back     alignment and domain information
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14461 Prok-E2_B: Prokaryotic E2 family B Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins Back     alignment and domain information
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
2f0r_A159 Crystallographic Structure Of Human Tsg101 Uev Doma 3e-07
1kpp_A145 Structure Of The Tsg101 Uev Domain Length = 145 4e-07
1s1q_A145 Tsg101(Uev) Domain In Complex With Ubiquitin Length 8e-06
3p9g_A145 Crystal Structure Of The Tsg101 Uev Domain In Compl 2e-04
3obq_A146 Crystal Structure Of The Tsg101 Uev Domain In Compl 2e-04
2f66_A65 Structure Of The Escrt-I Endosomal Trafficking Comp 2e-04
2caz_A82 Escrt-I Core Length = 82 7e-04
>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain Length = 159 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 32  LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHEN 89
           L  ++ ++++  Y       D++  NDG++  L  ++G   V    +T  I   LWL + 
Sbjct: 34  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 93
Query: 90  YPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149
           YP   P+ F+  ++SM      H  V   G I  PYL  W +P  +L  L+  ++ +F  
Sbjct: 94  YPYNPPICFVKPTSSMTIKTGKH--VDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD 151
Query: 150 DHPL 153
           + P+
Sbjct: 152 EPPV 155
>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain Length = 145 Back     alignment and structure
>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 145 Back     alignment and structure
>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With Fa459 Peptide Length = 145 Back     alignment and structure
>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With A Human Hrs Psap Peptide Length = 146 Back     alignment and structure
>pdb|2F66|A Chain A, Structure Of The Escrt-I Endosomal Trafficking Complex Length = 65 Back     alignment and structure
>pdb|2CAZ|A Chain A, Escrt-I Core Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 5e-30
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 2e-29
2p22_A174 Suppressor protein STP22 of temperature- sensitive 2e-27
2f6m_A65 Suppressor protein STP22 of temperature-sensitive 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146 Back     alignment and structure
 Score =  110 bits (276), Expect = 5e-30
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 28  NQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHV--SQSTPPIHFTLW 85
             + L  ++ ++++  Y       D++         L  ++G   V    +T  I   LW
Sbjct: 20  KYRDLTVRETVNVITLYKDLKPVLDSYGTGSR---ELMNLTGTIPVPYRGNTYNIPICLW 76

Query: 86  LHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQ 145
           L + YP   P+ F+  ++SM    +    V   G I  PYL  W +P  +L  L+  ++ 
Sbjct: 77  LLDTYPYNPPICFVKPTSSM--TIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIV 134

Query: 146 IFSHDHPLIY 155
           +F  + P+  
Sbjct: 135 VFGDEPPVFS 144
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162 Back     alignment and structure
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A Length = 174 Back     alignment and structure
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A* Length = 65 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 100.0
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 100.0
2p22_A174 Suppressor protein STP22 of temperature- sensitive 99.97
2f6m_A65 Suppressor protein STP22 of temperature-sensitive 99.95
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 98.91
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 98.89
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 98.85
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 98.76
3iv1_A78 Tumor susceptibility gene 101 protein; coiled_COIL 98.75
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 98.75
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 98.72
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 98.72
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 98.72
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 98.7
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 98.69
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 98.69
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 98.69
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 98.68
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 98.67
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 98.67
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 98.66
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 98.65
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 98.62
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 98.61
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 98.61
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 98.59
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 98.58
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 98.58
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 98.57
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 98.57
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 98.57
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 98.57
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 98.55
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 98.55
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 98.54
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 98.5
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 98.5
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 98.49
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 98.48
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 98.47
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 98.46
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 98.45
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 98.44
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 98.42
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 98.41
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 98.41
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 98.4
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 98.4
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 98.39
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 98.37
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 98.37
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 98.36
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 98.35
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 98.32
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 98.31
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 98.21
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 97.27
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 94.67
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 91.18
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 85.18
2f6m_B109 Vacuolar protein sorting-associated protein VPS28; 83.33
2p22_B118 Vacuolar protein sorting-associated protein 28; en 82.63
2caz_B155 Vacuolar protein sorting-associated protein VPS28; 80.35
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Back     alignment and structure
Probab=100.00  E-value=2.2e-44  Score=306.47  Aligned_cols=137  Identities=22%  Similarity=0.443  Sum_probs=131.2

Q ss_pred             HHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeEE
Q 047127            6 SIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFT   83 (322)
Q Consensus         6 v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi~   83 (322)
                      ..+||.++|++       |.+++.+   .+|+.+++++||+|+|++++|+   |++++||||+|||||.  |.+|||||.
T Consensus         8 ~~~~l~~~l~~-------Y~~~d~t---~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~GtIpv~y~g~~y~iPi~   74 (146)
T 3obq_A            8 SESQLKKMVSK-------YKYRDLT---VRETVNVITLYKDLKPVLDSYG---TGSRELMNLTGTIPVPYRGNTYNIPIC   74 (146)
T ss_dssp             CHHHHHHHTTT-------CSSHHHH---HHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEEEEEEECSSCEEEEEEE
T ss_pred             CHHHHHHHHhc-------CCCcchh---HHHHHHHHHhCCCCceEeeeee---CChheEEEEEEEeeeeecCccccceEE
Confidence            46899999995       9999987   5999999999999999999998   9999999999999999  999999999


Q ss_pred             EeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCCCcCC
Q 047127           84 LWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYS  157 (322)
Q Consensus        84 Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl~~~p  157 (322)
                      ||||++||++||+|||+ ||++|.|+++ ++||++|+|++|||++|++++|||++|+++|+.+|+++||||+||
T Consensus        75 Iwlp~~YP~~pP~vfv~-pt~~m~I~~~-~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk~  146 (146)
T 3obq_A           75 LWLLDTYPYNPPICFVK-PTSSMTIKTG-KHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP  146 (146)
T ss_dssp             EECCTTTTTSCCEEEEC-CCTTEEECCB-TTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEECC
T ss_pred             EEeCccCCCCCCEEEEe-CCCCCEECCC-CCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccCC
Confidence            99999999999999999 9999999876 999999999999999999989999999999999999999999975
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* Back     alignment and structure
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A Back     alignment and structure
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A* Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B Back     alignment and structure
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 322
d1s1qa_141 d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 7e-26
d1uzxa_152 d.20.1.2 (A:) Vacuolar protein sorting-associated 3e-24
d2f6ma164 a.2.17.1 (A:322-385) Vacuolar protein sorting-asso 9e-19
d1z2ua1147 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U 2e-04
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 7e-26
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 28  NQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHV--SQSTPPIHFTLW 85
             + L  ++ ++++  Y       D++  NDG++  L  ++G   V    +T  I   LW
Sbjct: 14  KYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLW 73

Query: 86  LHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQ 145
           L + YP   P+ F+  ++SM         V   G I  PYL  W +P  +L  L+  ++ 
Sbjct: 74  LLDTYPYNPPICFVKPTSSMTIK--TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIV 131

Query: 146 IFSHDHPLI 154
           +F  + P+ 
Sbjct: 132 VFGDEPPVF 140
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 Back     information, alignment and structure
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 64 Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
d1uzxa_152 Vacuolar protein sorting-associated {Baker's yeast 100.0
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 100.0
d2f6ma164 Vacuolar protein sorting-associated protein 23, VP 99.95
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 98.85
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 98.74
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.73
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 98.69
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.66
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 98.66
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.64
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.59
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 98.56
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 98.56
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.56
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 98.54
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 98.52
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 98.52
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.52
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.5
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.47
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 98.46
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.44
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 98.43
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 98.41
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.38
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 98.37
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 98.33
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.24
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.16
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 98.14
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 97.96
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 97.96
d2f6mb1104 Vacuolar protein sorting-associated protein 28, VP 85.21
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 82.28
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 80.67
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-42  Score=294.18  Aligned_cols=140  Identities=23%  Similarity=0.417  Sum_probs=125.0

Q ss_pred             CchhHHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCC-C
Q 047127            2 APSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QST-P   78 (322)
Q Consensus         2 ~p~~v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~-y   78 (322)
                      .|++|++||++|||+      .|++++.+   ++|+..+|+.||+|+|++++|+++||++++||||+|||||.  |++ |
T Consensus         2 ~~~~~~~wL~~vlq~------~Y~~~~~v---~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y   72 (152)
T d1uzxa_           2 VPEAVVNWLFKVIQP------IYNDGRTT---FHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPH   72 (152)
T ss_dssp             CCHHHHHHHHHHHHH------HCTTHHHH---HHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------
T ss_pred             ccHHHHHHHHHHhhh------hcCCcchH---HHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCcee
Confidence            699999999999998      69998764   79999999999999999999999999999999999999999  775 9


Q ss_pred             CeeEEEeecccCCCCCCEEEEecCCC------CCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCC
Q 047127           79 PIHFTLWLHENYPSMAPMAFIVSSNS------MYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHP  152 (322)
Q Consensus        79 ~iPi~Iwlp~~yP~~pP~v~v~~pt~------~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pP  152 (322)
                      ||||+||||++||+.||+|||+ |+.      +|.|+. |++||++|+|++|||++|..++|||+++++.|...|+++||
T Consensus        73 ~ipi~I~lP~~YP~~pP~v~~~-~~~~~~~~~~~~i~~-hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_          73 SIPVIMWVPSMYPVKPPFISIN-LENFDMNTISSSLPI-QEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             CEEEEEECCTTTTTSCCEEEEC-CTTCCSCC----CGG-GGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             EEEEEEEcCCCCCCCCCEEEEe-cCcccccCCCccccc-CCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999998 754      455544 59999999999999999999999999999999999998765
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure