Citrus Sinensis ID: 047128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW
Secondary Structure (PSIPRED)
ccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEEcccEEEEcccccEEEEEEcccccccccccHHHHccccccccccccccccccccccHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcHHHHHHHHHHEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccEEEEcccccccccccHHHcccccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccEEEccHHccHHHccHHHccccccccccccHHccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGSLTSLVWLRLGKNKLSVDILVSLkncttlesldvgenefvgniptwIGERFSRMVVLILRSnkfhgplptrlcdlpflqildiadtnlsgaipnwINNLTGMVTSCSFTRsvqqylplpidVGVILVEKASvvskgemvdyEDILNLVRMIDisrnnfsgkipleVTNLKALHSLNFSYNsftrripesigvmtslesidfstnqlsgeipesmssltfsnhlnlsnnnltgkipsstqlqsfdvssfagndlcgapipknctenvsifedengdededevDHWLYVSATLGFVVGFWcfmrpllvrrrw
Flexible Loop (DISEMBL)
MGSLTSLVWLRLGKNKLSVDILVSLKNCttlesldvgenefvgNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKasvvskgemvdYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW
Low Complexity Region (SEG)
MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMssltfsnhlnlsnnnlTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFedengdededevdHWLYVSATLGFVVGFWCFMRPLLVRRRW
Disordered region (IsUnstruct)
****TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESI********************************************DVSSFAGNDLCGAPIPKNCTENVSIF**********EVDHWLYVSATLGFVVGFWCFMRPLLVR***
Disordered Region (DISOPRED)
MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTS****RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI*************************WLYVSATLGFVVGFWCFMRPLLVRRRW
Disordered Region (DISEMBL)
MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW
Disordered Region (DISPRO)
**SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.919	0.338	0.345	4e-35
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.724	0.206	0.347	9e-32
Q9FL28	1173	LRR receptor-like serine/	no	no	0.842	0.224	0.358	3e-31
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.75	0.186	0.352	5e-29
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.826	0.353	0.310	4e-28
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.759	0.189	0.329	8e-28
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.977	0.252	0.279	3e-27
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.977	0.252	0.279	3e-27
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.964	0.251	0.290	4e-27
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.730	0.226	0.325	7e-27

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 157/307 (51%), Gaps = 20/307 (6%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
           T LV L +  N+L      SL NC  LE ++V  N+     P+W+ E    + VL LRSN
Sbjct: 516 TELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSN 574

Query: 65  KFHGPLPTRLCDLPF--LQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLP 121
           KF+GPL  R   + F  L+I+DI+  N SG +P  + +N   M T    T  + QY+   
Sbjct: 575 KFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT---LTEEMDQYMTEF 631

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                    +  +V+KG  + +E I    R ID S N  +G IP  +  LK L  LN S 
Sbjct: 632 WRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSG 691

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241
           N+FT  IP  +  +T LE++D S N+LSG+IP+ +++L+F +++N S+N L G +P  TQ
Sbjct: 692 NAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQ 751

Query: 242 LQSFDVSSFAGN-------DLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSATLG 294
            Q    SSF  N       D+C      N T  +     E+  E E+ + +W  V+A + 
Sbjct: 752 FQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLP----EDLSEAEENMFNW--VAAAIA 805

Query: 295 FVVGFWC 301
           +  G  C
Sbjct: 806 YGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 131/236 (55%), Gaps = 10/236 (4%)

Query: 30  TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTN 89
           +L+   +G     G IP W+  +  R+ V+ L  N+F G +P  L  LP L  LD++D  
Sbjct: 472 SLQIFGIGACRLTGEIPAWL-IKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNF 530

Query: 90  LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL 149
           L+G +P  +  L  +++  ++  + + YL LP+      V   +V +  +   Y  + +L
Sbjct: 531 LTGELPKELFQLRALMSQKAYDATERNYLELPV-----FVNPNNVTTNQQ---YNQLSSL 582

Query: 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209
              I I RNN +G IP+EV  LK LH L    N+F+  IP+ +  +T+LE +D S N LS
Sbjct: 583 PPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLS 642

Query: 210 GEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND-LCGAPIPKNC 264
           G IP S++ L F ++ N++NN L+G IP+ TQ  +F  ++F GN  LCG  +  +C
Sbjct: 643 GRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC 698

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 146/273 (53%), Gaps = 10/273 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           M +LT L  LR+  N L   I   + +   L  LD+  N+F G IP     +   +  L 
Sbjct: 523 MSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKLESLTYLS 581

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLP 119
           L+ NKF+G +P  L  L  L   DI+D  L+G IP   + +L  M    +F+ ++     
Sbjct: 582 LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTG-T 640

Query: 120 LPIDVG----VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKAL 174
           +P ++G    V  ++ ++ +  G +         V  +D S+NN SG IP EV   +  +
Sbjct: 641 IPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMI 700

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
            SLN S NSF+  IP+S G MT L S+D S+N L+GEIPES+++L+   HL L++NNL G
Sbjct: 701 ISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKG 760

Query: 235 KIPSSTQLQSFDVSSFAGN-DLCGAPIP-KNCT 265
            +P S   ++ + S   GN DLCG+  P K CT
Sbjct: 761 HVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 133/261 (50%), Gaps = 27/261 (10%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           G ++ L  L + +N LS  I V L  C  L  +D+  N   G IPTW+G +   +  L L
Sbjct: 621 GKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKL 679

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            SNKF G LPT +  L  +  L +   +L+G+IP  I NL  +  +       Q   PLP
Sbjct: 680 SSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQAL--NALNLEENQLSGPLP 737

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS-LNFS 180
             +G                     L+ +  + +SRN  +G+IP+E+  L+ L S L+ S
Sbjct: 738 STIGK--------------------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLS 777

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
           YN+FT RIP +I  +  LES+D S NQL GE+P  +  +    +LNLS NNL GK+    
Sbjct: 778 YNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KK 835

Query: 241 QLQSFDVSSFAGN-DLCGAPI 260
           Q   +   +F GN  LCG+P+
Sbjct: 836 QFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 143/283 (50%), Gaps = 25/283 (8%)

Query: 31  LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNL 90
           L    VG     G IP W+    +++ V+ L  N+F G +P  L  LP L  LD++D  L
Sbjct: 471 LRIFGVGACRLRGEIPAWL-INLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLL 529

Query: 91  SGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV 150
           +G +P  +  L  +++      +   YL LPI      +   +V +  +   Y  + +  
Sbjct: 530 TGELPKELFQLRALMSQ---KITENNYLELPI-----FLNPNNVTTNQQ---YNKLYSFP 578

Query: 151 RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG 210
             I I RNN +G IP+EV  LK LH L    N+ +  IP+ +  +T+LE +D S N LSG
Sbjct: 579 PTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSG 638

Query: 211 EIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND-LCGAPIPKNCTENVS 269
            IP S+++L F ++ N++NN+L G IPS  Q  +F  ++F GN  LCG  +  +C    +
Sbjct: 639 SIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRA 698

Query: 270 IFEDENGDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW 312
                   ++ DE++     +  +G  +G++     +LV R W
Sbjct: 699 --------KENDELNR----TFLMGIAIGYFLSFVSILVVRAW 729

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 27/264 (10%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +G +  L  L +  N L+  I + L  C  L  +D+  N   G IP W+G + S++  L 
Sbjct: 619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELK 677

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L SN+F   LPT L +   L +L +   +L+G+IP  I NL  +                
Sbjct: 678 LSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL---------------- 721

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS-LNF 179
                V+ ++K      G +      L+ +  + +SRN+ +G+IP+E+  L+ L S L+ 
Sbjct: 722 ----NVLNLDKNQF--SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDL 775

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           SYN+FT  IP +IG ++ LE++D S NQL+GE+P S+  +    +LN+S NNL GK+   
Sbjct: 776 SYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--K 833

Query: 240 TQLQSFDVSSFAGN-DLCGAPIPK 262
            Q   +   SF GN  LCG+P+ +
Sbjct: 834 KQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 31/336 (9%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L +L  L L  N L+  I  SL NCT L  + +  N+  G IP  +G R S + +L L +
Sbjct: 498 LQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLG-RLSNLAILKLGN 556

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP-- 121
           N   G +P  L +   L  LD+    L+G+IP  +   +G +     T     Y+     
Sbjct: 557 NSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGS 616

Query: 122 ---------IDVGVILVEKASVVSKGEMVDYEDILNLVR-----------MIDISRNNFS 161
                    ++ G I  E+   +S     ++  +   +             +D+S N   
Sbjct: 617 KECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLE 676

Query: 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF 221
           G IP E+  +  L  LN  +N  +  IP+ +G + ++  +D S N+ +G IP S++SLT 
Sbjct: 677 GSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTL 736

Query: 222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDED 281
              ++LSNNNL+G IP S    +F    FA N LCG P+P  C+       D N  +   
Sbjct: 737 LGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLCGYPLPLPCSSGPK--SDANQHQKSH 794

Query: 282 EVDHWLYVSATLGFVVGFWCFMRPLLV------RRR 311
                L  S  +G +   +C    ++V      RRR
Sbjct: 795 RRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 31/336 (9%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L +L  L L  N L+  I  SL NCT L  + +  N+  G IP  +G R S + +L L +
Sbjct: 498 LQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLG-RLSNLAILKLGN 556

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP-- 121
           N   G +P  L +   L  LD+    L+G+IP  +   +G +     T     Y+     
Sbjct: 557 NSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGS 616

Query: 122 ---------IDVGVILVEKASVVSKGEMVDYEDILNLVR-----------MIDISRNNFS 161
                    ++ G I  E+   +S     ++  +   +             +D+S N   
Sbjct: 617 KECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLE 676

Query: 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF 221
           G IP E+  +  L  LN  +N  +  IP+ +G + ++  +D S N+ +G IP S++SLT 
Sbjct: 677 GSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTL 736

Query: 222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDED 281
              ++LSNNNL+G IP S    +F    FA N LCG P+P  C+       D N  +   
Sbjct: 737 LGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLCGYPLPIPCSSGPK--SDANQHQKSH 794

Query: 282 EVDHWLYVSATLGFVVGFWCFMRPLLV------RRR 311
                L  S  +G +   +C    ++V      RRR
Sbjct: 795 RRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 145/331 (43%), Gaps = 30/331 (9%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           + +L  L L  N L+ +I   L NCT L  + +  N   G IP WIG R   + +L L +
Sbjct: 487 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSN 545

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPN--------------------WINNLTG 103
           N F G +P  L D   L  LD+     +G IP                     +I N  G
Sbjct: 546 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DG 604

Query: 104 MVTSCSFTRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRN 158
           M   C    ++ ++  +  +    L  +      S V  G      D    +  +D+S N
Sbjct: 605 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 664

Query: 159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSS 218
             SG IP E+ ++  L  LN  +N  +  IP+ +G +  L  +D S+N+L G IP++MS+
Sbjct: 665 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 724

Query: 219 LTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPKNCTENVSIFEDENGD 277
           LT    ++LSNNNL+G IP   Q ++F  + F  N  LCG P+P+    N   +      
Sbjct: 725 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 784

Query: 278 EDEDEVDHWLYVSATLGFVVGFWCFMRPLLV 308
                    L  S  +G +  F C    +LV
Sbjct: 785 HGRRPAS--LAGSVAMGLLFSFVCIFGLILV 813

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 24/252 (9%)

Query: 25  LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84
           L++C  L +L +  N     +P      F ++ VL++ + +  G +P  L     LQ+LD
Sbjct: 386 LQHCKNLTTLVLTLNFHGEALPDDSSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLD 445

Query: 85  IADTNLSGAIPNWINNLTGM----VTSCSFTRSVQQYL---------------PLPIDVG 125
           ++   L+GAIP+WI +   +    +++ SFT  + + L               P P D  
Sbjct: 446 LSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLTKLESLTSRNISVNEPSP-DFP 504

Query: 126 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT 185
             +    S       + Y  I      I++  NN SG I  E  NLK LH  +  +N+ +
Sbjct: 505 FFMKRNESA----RALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALS 560

Query: 186 RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSF 245
             IP S+  MTSLE++D S N+LSG IP S+  L+F +  +++ NNL+G IPS  Q Q+F
Sbjct: 561 GSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTF 620

Query: 246 DVSSFAGNDLCG 257
             SSF  N LCG
Sbjct: 621 PNSSFESNHLCG 632

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224072885	1024	predicted protein [Populus trichocarpa]	0.980	0.298	0.507	2e-78
255543959	602	serine-threonine protein kinase, plant-t	0.958	0.496	0.493	5e-74
209970607	1045	M18S-3Ap [Malus floribunda]	0.996	0.297	0.504	3e-73
255543977	1075	serine/threonine-protein kinase bri1, pu	0.980	0.284	0.495	4e-73
350284765	982	receptor-like protein [Malus sieversii]	0.983	0.312	0.498	2e-71
255581850	1082	leucine-rich repeat receptor protein kin	0.987	0.284	0.461	3e-71
350284763	982	receptor-like protein [Malus micromalus]	0.983	0.312	0.495	9e-71
209970625	974	HB09p [Malus floribunda]	0.977	0.313	0.490	2e-70
350284755	982	receptor-like protein [Malus micromalus]	0.983	0.312	0.492	3e-70
209970605	974	HB03p [Malus floribunda]	0.977	0.313	0.481	5e-70

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/313 (50%), Positives = 204/313 (65%), Gaps = 7/313 (2%)

Query: 1    MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            +G+L+ L  L +  + LS  + +SLKNCT L +LDV ENE VG++P WIG+RFS MVVL 
Sbjct: 698  IGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLN 757

Query: 61   LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
            +R+NKFHG +P  LC+L  LQILD+A   LS +IP   N L+ M T       +      
Sbjct: 758  MRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGKIY----- 812

Query: 121  PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
             +D G    +   +V KG++V+Y  IL  VR ID+S N   G+IP EVT L  L SLN S
Sbjct: 813  -LDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLS 871

Query: 181  YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
             NS T RIPE IG +  LES+DFS NQLSGEIP+SMS LTF +HLNLS+N L G+IPS T
Sbjct: 872  QNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGT 931

Query: 241  QLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVD-HWLYVSATLGFVVGF 299
            QLQSF  SSF+GN+LCG P+ KNC+ +     +   +ED + +   W YVS  LGF+VGF
Sbjct: 932  QLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHEREEDGNGLKGRWFYVSMVLGFIVGF 991

Query: 300  WCFMRPLLVRRRW 312
            W  + PL+  RRW
Sbjct: 992  WGVVGPLMFNRRW 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543959|ref|XP_002513042.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548053|gb|EEF49545.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 160/324 (49%), Positives = 202/324 (62%), Gaps = 25/324 (7%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +G L+ L  L L  N L+ +I  SL+NCT L +LD+G+N+ VGNIP WIGE F  MV+L 
Sbjct: 272 IGGLSRLESLHLRNNTLTGEIPPSLRNCTGLSTLDLGQNQLVGNIPRWIGETFPDMVILS 331

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           LRSNKF G +P +LC +  L ILD+AD NLSG IP  +NN + MV+              
Sbjct: 332 LRSNKFQGDVPKKLCLMSSLYILDLADNNLSGTIPKCLNNFSAMVSRDD----------- 380

Query: 121 PIDVGVILVEKAS---------VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL 171
              +G++L   AS         +V KG+M  Y  IL  VR ID+S+N  SG+IP E  +L
Sbjct: 381 --SIGMLLEGDASSWPFYESMFLVMKGKMDGYSSILKFVRSIDLSKNKLSGEIPEETISL 438

Query: 172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
           K L SLN S+N  T RIP  IG M SLES+DFS NQL GEIP SM+ LTF + LNLS NN
Sbjct: 439 KGLQSLNLSHNLLTGRIPTDIGDMESLESLDFSQNQLFGEIPRSMAKLTFLSFLNLSFNN 498

Query: 232 LTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPKNCTENVSIFE--DENGDEDEDEVDHWLY 288
           LTG+IP+ TQLQSF   SF GN +LCG P+  NC+ +  +    D  GD+   +  +W Y
Sbjct: 499 LTGRIPTGTQLQSFSSFSFKGNKELCGPPVTMNCSGDSELPGTIDGRGDDQNGQEVNWFY 558

Query: 289 VSATLGFVVGFWCFMRPLLVRRRW 312
           VS  LGFVVGFW    PL++ RRW
Sbjct: 559 VSVALGFVVGFWGAFGPLVLNRRW 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 200/317 (63%), Gaps = 6/317 (1%)

Query: 1    MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            MG L  L  L L  N L  ++  SL+NCT L  +D+GEN F G+IP WIG+  S + +L 
Sbjct: 707  MGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILN 766

Query: 61   LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
            LRSNKF G +P  +C L  LQILD+A   LSG IP   +NL+ M    S +R    Y+ L
Sbjct: 767  LRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMA-DFSESRDASVYVIL 825

Query: 121  -PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
              I V + +  KA +V+KG  ++Y  IL  V+ +D+S N   G+IP E+T+L AL SLN 
Sbjct: 826  NGISVPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNL 885

Query: 180  SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
            S N FT RIP  IG M  LES+DFS NQL GEIP+SM++LTF +HLNLSNNNLTG+IP S
Sbjct: 886  SNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKS 945

Query: 240  TQLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGF 295
            TQLQS D SSF GN+LCGAP+ KNC+EN  I     E + G       D W YVS  +GF
Sbjct: 946  TQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYNLLEDEWFYVSLGVGF 1005

Query: 296  VVGFWCFMRPLLVRRRW 312
              GFW  +  LLV   W
Sbjct: 1006 FTGFWIVLGSLLVNMPW 1022

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/323 (49%), Positives = 205/323 (63%), Gaps = 17/323 (5%)

Query: 1    MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            +G+L+ L  +    N LS DI +S++NC  L +LD   N+ VG IP+WIG+    M++LI
Sbjct: 739  IGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILI 798

Query: 61   LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMV----TSCSFTRSVQQ 116
            LR NK HG +P  +C +  LQILD+AD N S  IP+  +N +GMV    +  S T     
Sbjct: 799  LRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQSN 858

Query: 117  YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS 176
              P PI     L++ A +V KG + +Y  IL  V+ ID+S NN SG+IP+ +T+L  L S
Sbjct: 859  VGPSPI-----LIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQS 913

Query: 177  LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236
            L+FS NS T RIP+ IG M SLESIDFS N L GEIPES+SSLTF +HLNLSNN LTGKI
Sbjct: 914  LSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKI 973

Query: 237  PSSTQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDED-----EVDHWLY--V 289
            PS TQL+ FD SSF  NDLCG P+P NC++   +   ++  E E+     EVD W Y  V
Sbjct: 974  PSGTQLRGFDPSSFMDNDLCGPPLPLNCSKEGILHAPDDEKEREEDENGFEVD-WFYFFV 1032

Query: 290  SATLGFVVGFWCFMRPLLVRRRW 312
            S   GFVVGFW  + PL   RRW
Sbjct: 1033 SIAPGFVVGFWLVVGPLCFNRRW 1055

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284765|gb|AEQ27754.1| receptor-like protein [Malus sieversii]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/317 (49%), Positives = 196/317 (61%), Gaps = 10/317 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           MG L  L  L L  N L  ++  SL+NCT+L  +D+ EN F G+IPTWIG+  S + VL 
Sbjct: 648 MGYLQDLGSLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWIGKSLSDLKVLS 707

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLP 119
           LRSNKF G +P  +C L  LQILD+A   LSG IP   +NL+ +   S SF+ +      
Sbjct: 708 LRSNKFEGEIPNEVCYLKSLQILDLAHNKLSGMIPRRFHNLSALANFSESFSPTSSWG-- 765

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
              +V  +L E A +V+KG  ++Y  IL  V+ +D+S N   G+IP E+T L AL SLN 
Sbjct: 766 ---EVASVLTENAILVTKGIEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLIALQSLNL 822

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           S N FT RIP  IG M  LES+DFS NQL GEIP SM+ LTF +HLNLS NNLTG+IP S
Sbjct: 823 SNNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTKLTFLSHLNLSYNNLTGRIPES 882

Query: 240 TQLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGF 295
           TQLQS D SSF GN+LCGAP+ KNC+EN  I     E + G       D W YVS  +GF
Sbjct: 883 TQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYRLLEDEWFYVSLGVGF 942

Query: 296 VVGFWCFMRPLLVRRRW 312
             GFW  +  LLV   W
Sbjct: 943 FTGFWIVLGSLLVNMPW 959

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/321 (46%), Positives = 206/321 (64%), Gaps = 13/321 (4%)

Query: 1    MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            +G+L+ L  L +  N LS ++ +SLK+CT+L+ LD+  NE  G I TW+G+ F   ++L 
Sbjct: 737  IGTLSELSVLNIRNNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILN 796

Query: 61   LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
            LR NKFHG +P  LC +  L ILD A+ NL+G IP  INN T +++  S+ +  +    +
Sbjct: 797  LRGNKFHGFIPEELCGMTALVILDFANNNLNGTIPRCINNFTALLSGTSYLKDGK----V 852

Query: 121  PIDVGVILV--EKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
             +D G  L   E + +   G++V+Y   L  VR +D S N  SG+IP E+T+L+ L  LN
Sbjct: 853  LVDYGPTLTYSESSLIERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLN 912

Query: 179  FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
             S+NS T RIPE+IG M +L+ +DFS NQLSGEIP+SMSSLTF N+LNLS+N L+G IPS
Sbjct: 913  LSHNSLTGRIPENIGAMKALQILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPS 972

Query: 239  STQLQSFDVSSFAGNDLCGAPIPKNCT-----ENVSIFEDENGDEDEDEVDHW--LYVSA 291
            STQLQSFD SSF+GN+LCG P+ ++C+      ++     E+G     E   W   YVS 
Sbjct: 973  STQLQSFDSSSFSGNNLCGPPLTQSCSGDGEKPDIEKRTTEDGGNGSPEAIDWFYFYVSI 1032

Query: 292  TLGFVVGFWCFMRPLLVRRRW 312
              GFV+GFW  + PL   +RW
Sbjct: 1033 APGFVIGFWVVVGPLAFNKRW 1053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284763|gb|AEQ27753.1| receptor-like protein [Malus micromalus]

 Score =  273 bits (697), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 157/317 (49%), Positives = 195/317 (61%), Gaps = 10/317 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           MG L  L  L L  N L  ++  SL+NCT+L  +D+ EN F G+IP WIG+  S + VL 
Sbjct: 648 MGYLQDLGSLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSDLKVLS 707

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLP 119
           LRSNKF G +P  +C L  LQILD+A   LSG IP   +NL+ +   S SF+ +      
Sbjct: 708 LRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPTSSWG-- 765

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
              +V  +L E A +V+KG  ++Y  IL  V+ +D+S N   G+IP E+T L AL SLN 
Sbjct: 766 ---EVASVLTENAILVTKGIEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLIALQSLNL 822

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           S N FT RIP  IG M  LES+DFS NQL GEIP SM+ LTF +HLNLS NNLTG+IP S
Sbjct: 823 SNNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTKLTFLSHLNLSYNNLTGRIPES 882

Query: 240 TQLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGF 295
           TQLQS D SSF GN+LCGAP+ KNC+EN  I     E + G       D W YVS  +GF
Sbjct: 883 TQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYRLLEDEWFYVSLGVGF 942

Query: 296 VVGFWCFMRPLLVRRRW 312
             GFW  +  LLV   W
Sbjct: 943 FTGFWIVLGSLLVNMPW 959

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/316 (49%), Positives = 198/316 (62%), Gaps = 11/316 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           M  L  L  L L  N L  ++  SL+NC++L  +D+G N FVG+IP WIG+  SR+ VL 
Sbjct: 643 MRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIPIWIGKSLSRLNVLN 702

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           LRSN+F G +P+ +C L  LQILD+A   LSG IP   +NL+ M T   F+ S   +  +
Sbjct: 703 LRSNEFEGDIPSEICYLKNLQILDLARNKLSGTIPRCFHNLSAMAT---FSES---FSSI 756

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
               G   VE + VV+KG  V+Y +IL  V+ +D+S N   G+IP E+T+L AL SLN S
Sbjct: 757 TFRTGTS-VEASIVVTKGREVEYTEILGFVKGMDLSCNFMYGEIPEELTDLLALQSLNLS 815

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
           +N FT R+P  IG M  LES+DFS NQL GEIP SM++LTF +HLNLS NNLTG+IP ST
Sbjct: 816 HNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKST 875

Query: 241 QLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGFV 296
           QLQS D SSF GN+LCGAP+ KNC  N  I     E + G       D W YV+  +GF 
Sbjct: 876 QLQSLDQSSFVGNELCGAPLNKNCRANGVIPPPTVEQDGGGGYRLLEDEWFYVNLAVGFF 935

Query: 297 VGFWCFMRPLLVRRRW 312
            GFW  +  LLV   W
Sbjct: 936 TGFWIVLGSLLVNMPW 951

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284755|gb|AEQ27749.1| receptor-like protein [Malus micromalus]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/317 (49%), Positives = 194/317 (61%), Gaps = 10/317 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           MG L  L  L L  N L  ++  SL+NCT+L  +D+ EN F G+IP WIG+  S + VL 
Sbjct: 648 MGYLQDLGSLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSDLKVLS 707

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLP 119
           LRSNKF G +P  +C L  LQILD+A   LSG IP   +NL+ +   S SF+ +      
Sbjct: 708 LRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPTSSWG-- 765

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
              +V  +L E A +V+KG  ++Y  IL  V+ +D+S N   G+IP E+T L AL SLN 
Sbjct: 766 ---EVASVLTENAILVTKGIEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLIALQSLNL 822

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           S N FT RIP  IG M  LES+DFS NQL GEIP SM+ LTF +HLNLS NNLTG+IP S
Sbjct: 823 SNNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTKLTFLSHLNLSYNNLTGRIPES 882

Query: 240 TQLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGF 295
           TQLQ  D SSF GN+LCGAP+ KNC+EN  I     E + G       D W YVS  +GF
Sbjct: 883 TQLQGLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYRLLEDEWFYVSLGVGF 942

Query: 296 VVGFWCFMRPLLVRRRW 312
             GFW  +  LLV   W
Sbjct: 943 FTGFWIVLGSLLVNMPW 959

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970605|gb|ACJ03065.1| HB03p [Malus floribunda]

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 152/316 (48%), Positives = 196/316 (62%), Gaps = 11/316 (3%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           M  L  L  L L  N L  ++  SL+NC++L  +D+G N FVG+IP W+G+  SR+ VL 
Sbjct: 643 MRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIPIWMGKSLSRLNVLN 702

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           LRSN+F G +P+ +C L  LQILD+A   LSG IP   +NL+ M T      S+   +  
Sbjct: 703 LRSNEFEGDIPSEICHLKNLQILDLARNKLSGTIPRCFHNLSAMATLSESFSSITFMIST 762

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                   VE + VV+KG  V+Y +IL  V+ +D+S N   G+IP E+T+L AL SLN S
Sbjct: 763 S-------VEASVVVTKGIEVEYTEILGFVKGMDLSCNFMYGEIPEELTDLLALQSLNLS 815

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
           +N FT R+P  IG M  LES+DFS NQL GEIP SM++LTF +HLNLS NNLTG+IP ST
Sbjct: 816 HNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKST 875

Query: 241 QLQSFDVSSFAGNDLCGAPIPKNCTENVSI----FEDENGDEDEDEVDHWLYVSATLGFV 296
           QLQS D SSF GN+LCGAP+ KNC+ N  I     E + G       D W YV+  +GF 
Sbjct: 876 QLQSLDQSSFVGNELCGAPLNKNCSANGVIPPPTVEQDGGGGYRLLEDEWFYVNLAVGFF 935

Query: 297 VGFWCFMRPLLVRRRW 312
            GFW  +  LLV   W
Sbjct: 936 TGFWIVLGSLLVNMPW 951

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.823	0.324	0.335	2.3e-32
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.826	0.438	0.349	1.2e-31
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.935	0.402	0.307	1.9e-30
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.833	0.387	0.334	3.4e-30
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.807	0.311	0.346	4.4e-30
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.907	0.317	0.324	1.9e-29
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.788	0.286	0.325	3.6e-29
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.923	0.388	0.294	4.2e-29
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.785	0.289	0.349	1.6e-28
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.676	0.233	0.35	1.8e-28

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 89/265 (33%), Positives = 142/265 (53%)

Query:     7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 66
             LV L +G N++S  +  SL NCTTL+ L+V  N      P W+ +  +R+ +++LRSN+F
Sbjct:   468 LVLLDVGHNQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWL-KALTRLEIIVLRSNRF 526

Query:    67 HGPLPTRLCDLPF--LQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLP---L 120
             HGP+ +    L F  L+I+DI+  + +G++P N+  N +  + +        +Y      
Sbjct:   527 HGPISSPEVSLSFTALRIIDISRNSFNGSLPQNYFANWSAPLVNTPQGYRWPEYTGDEHS 586

Query:   121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
               +  +       +  KG  ++   I +    ID S N+F G+IP  + +LK+L  L+ S
Sbjct:   587 KYETPLWSYPSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLS 646

Query:   181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSST 240
              NSFT RIP S+  +  LES+D S N++SG IP+ +                TG+IP ST
Sbjct:   647 NNSFTGRIPSSLAKLKQLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQST 706

Query:   241 QLQSFDVSSFAGN-DLCGAPIPKNC 264
             Q+     SSF GN +LCG P+ ++C
Sbjct:   707 QVGGQPKSSFEGNINLCGLPLQESC 731

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 94/269 (34%), Positives = 134/269 (49%)

Query:     2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             G+LT    L +G N+L+ ++  SL NC+ +  L V  N    + P W+ +    + VL L
Sbjct:   261 GALTQT--LDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWL-KALPNLKVLTL 317

Query:    62 RSNKFHGPL--PTRLCDLPF--LQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQ 116
             RSN FHGP+  P     L F  LQIL+I+    +G++P N+  N +  V S       + 
Sbjct:   318 RSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLPTNYFANWS--VKSLKMYDEERL 375

Query:   117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS 176
             Y+        +  +   +  KG  ++   +L     ID S N   G+IP  +  LK L +
Sbjct:   376 YMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIA 435

Query:   177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKI 236
             LN S NSFT  IP S   +T LES+D S N+LSGEIP+ +                TGKI
Sbjct:   436 LNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKI 495

Query:   237 PSSTQLQSFDVSSFAGND-LCGAPIPKNC 264
             P  TQ+     SSF GN  LCG P+ ++C
Sbjct:   496 PQGTQIIGQPKSSFEGNSGLCGLPLEESC 524

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 95/309 (30%), Positives = 148/309 (47%)

Query:     6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
             +L  L +G N LS  +  SL  CT LE L+V +N      P W+    S + +L+LRSN+
Sbjct:   411 TLTSLDVGHNWLSGQLPKSLIKCTDLEFLNVEDNRINDKFPFWL-RSLSNLQILVLRSNE 469

Query:    66 FHGPLPTRLCDLPF--LQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPI 122
             F+GP+ +    L F  L+I DI++ + +G +P+ +    + M +      +  Q   L +
Sbjct:   470 FYGPIFSLEDSLSFPKLRIFDISENHFTGVLPSDYFAGWSAMSSVVDIFDTTPQVHILGV 529

Query:   123 DVGVILVEKASVVSKGEMVDYEDI---LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
               G       SVV   + ++ E +     + + ID+S N   G IP  +  LK L  LN 
Sbjct:   530 FQGYY---HNSVVLTNKGLNMELVGSGFTIYKTIDVSGNRLEGDIPESIGILKELIVLNM 586

Query:   180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSS 239
             S N+FT  IP S+  +++L+S+D S N+LSG IP  +                 G IP +
Sbjct:   587 SNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLEGPIPQA 646

Query:   240 TQLQSFDVSSFAGND-LCGAPIPKNC------TENVSIFXXXXXXXXXXXXXHWLYVSAT 292
             TQ+QS + SSFA N  LCGAP    C       E  +                + +++A 
Sbjct:   647 TQIQSQNSSSFAENPGLCGAPFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQVFSWIAAA 706

Query:   293 LGFVVGFWC 301
             +G+V G +C
Sbjct:   707 IGYVPGVFC 715

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 91/272 (33%), Positives = 139/272 (51%)

Query:     5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
             +S+  L +G N+L+  +  SL NC++LE L V  N      P W+ +   ++ VL L SN
Sbjct:   341 SSIRTLDVGYNRLTGKLPRSLLNCSSLEFLSVDNNRIKDTFPFWL-KALPKLQVLTLSSN 399

Query:    65 KFHGPL-PTRLCDLPF--LQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPL 120
             KF+GP+ P     L F  L+IL+I+D   +G++ + +  N     +S      V  Y+  
Sbjct:   400 KFYGPISPPHQGPLGFPELRILEISDNKFTGSLSSRYFENWKA--SSAMMNEYVGLYMVY 457

Query:   121 PID-VGVIL---VEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS 176
               +  GV++   +++  +  KG  ++   +L     ID SRN   G IP  +  LKAL +
Sbjct:   458 EKNPYGVVVYTFLDRIDLKYKGLNMEQARVLTSYSAIDFSRNLLEGNIPESIGLLKALIA 517

Query:   177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKI 236
             LN S N+FT  IP+S+  +  L+S+D S NQLSG IP  +                 G+I
Sbjct:   518 LNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIPNGLKQLSFLAYISVSHNQLKGEI 577

Query:   237 PSSTQLQSFDVSSFAGN-DLCGAPIPKNCTEN 267
             P  TQ+     SSF GN  LCG P+ + C +N
Sbjct:   578 PQGTQITGQLKSSFEGNVGLCGLPLEERCFDN 609

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 90/260 (34%), Positives = 129/260 (49%)

Query:    10 LRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 69
             L +G N+L+  +  SL NC+ L  + V  N+     P W+ +    +  L LRSNKFHGP
Sbjct:   463 LDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWL-KALPDLQALTLRSNKFHGP 521

Query:    70 L--PTR-LCDLPFLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVG 125
             +  P R     P L+IL+I+D N +G++P N+  N     +S       + Y+    +  
Sbjct:   522 ISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEA--SSLQMNEDGRIYMGDYNNPY 579

Query:   126 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT 185
              I  +   +  KG  ++   +L     ID S N   G+IP  +  LKAL +LN S N+FT
Sbjct:   580 YIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFT 639

Query:   186 RRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSF 245
               IP S+  +T LES+D S NQLSG IP  +                 G+IP  TQ+   
Sbjct:   640 GHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQ 699

Query:   246 DVSSFAGN-DLCGAPIPKNC 264
               SSF GN  LCG P+  +C
Sbjct:   700 SKSSFEGNAGLCGLPLQGSC 719

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 97/299 (32%), Positives = 144/299 (48%)

Query:    10 LRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 69
             L +G N+LS     SL NC+ L+ L+V EN      P+W+ +    + +L+LRSN+FHGP
Sbjct:   573 LDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGP 631

Query:    70 LPTRLCDLPF--LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG-- 125
             + +    L F  L+  DI++   SG +P+  +   G     SF   +       + VG  
Sbjct:   632 IFSPGDSLSFSKLRFFDISENRFSGVLPS--DYFVGWSVMSSFVDIIDNTPGFTV-VGDD 688

Query:   126 VILVEKASVVS-KGEMVDYEDI-LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183
                  K+ V++ KG  ++       + + ID+S N   G IP  +  LK L  LN S N+
Sbjct:   689 QESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNA 748

Query:   184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQ 243
             FT  IP S+  +++L+S+D S N+LSG IP  +                 G IP  TQ+Q
Sbjct:   749 FTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQ 808

Query:   244 SFDVSSFAGND-LCGAPIPKNCTENVSIFXXXXXXXXXXXXXHWLYVSATLGFVVGFWC 301
             S + SSFA N  LCGAP+ K C                     W  V+A +G+V G +C
Sbjct:   809 SQNSSSFAENPGLCGAPLQKKCGGEEE---EDKEKEEKDKGLSW--VAAAIGYVPGLFC 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.6e-29, P = 3.6e-29
 Identities = 84/258 (32%), Positives = 134/258 (51%)

Query:     5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
             T L+ L + +NKL   +  SL +C  ++ L+V  N+     P+W+G   S + VLILRSN
Sbjct:   518 TKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPS-LHVLILRSN 576

Query:    65 KFHGPLPTRLCDLPF--LQILDIADTNLSGAIPN-----W--INNLTGMVTSCSFTRSVQ 115
             +F+G L      + F  L+++D++  +L G +P+     W  ++ LTG      F  S  
Sbjct:   577 EFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTG--EDGDFRLSEA 634

Query:   116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH 175
              Y+   ++     V+   +V+KG   +++ I    ++I+ S N FSG IP  +  LK L 
Sbjct:   635 PYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELR 694

Query:   176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGK 235
              LN S N+FT  IP+S+  +  LE++D S NQLSG+IP+ +                 G 
Sbjct:   695 HLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGP 754

Query:   236 IPSSTQLQSFDVSSFAGN 253
             +P STQ Q  + S+F  N
Sbjct:   755 VPKSTQFQGQNCSAFMEN 772

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 87/295 (29%), Positives = 145/295 (49%)

Query:    12 LGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP 71
             +G N  S ++  SL NC+ +E L+V +N      P+W+ E    + +L+LRSN+F+GP+ 
Sbjct:   425 VGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWL-ELLPNLQILVLRSNEFYGPIF 483

Query:    72 TRLCDLPF--LQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVIL 128
             +    L F  L+I DI++   +G +P+ +    + M +       + QY    ID     
Sbjct:   484 SPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRD-FY 542

Query:   129 VEKASVVSKGEMVDYEDI-LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR 187
              +  ++++KG  ++       + + ID+S N   G IP  +  LK +  L+ S N+FT  
Sbjct:   543 HKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGH 602

Query:   188 IPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDV 247
             IP S+  +++L+S+D S N+LSG IP  +                 G IP +TQ+Q+ D 
Sbjct:   603 IPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDS 662

Query:   248 SSFAGND-LCGAPIPKNCTENVSIFXXXXXXXXXXXXXHWLYVSATLGFVVGFWC 301
             SSF  N  LCGAP+ K C                     + +++A +G+V G  C
Sbjct:   663 SSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEEDQVFSWIAAAIGYVPGVVC 717

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 88/252 (34%), Positives = 123/252 (48%)

Query:     5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
             T LV L +  N+L      SL NC  LE ++V  N+     P+W+ E    + VL LRSN
Sbjct:   516 TELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSN 574

Query:    65 KFHGPLPTRLCDLPF--LQILDIADTNLSGAIPNW-INNLTGMVTSCSFTRSVQQYLPLP 121
             KF+GPL  R   + F  L+I+DI+  N SG +P +  +N   M T    T  + QY+   
Sbjct:   575 KFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT---LTEEMDQYMTEF 631

Query:   122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                      +  +V+KG  + +E I    R ID S N  +G IP  +  LK L  LN S 
Sbjct:   632 WRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSG 691

Query:   182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQ 241
             N+FT  IP  +  +T LE++D S N+LSG+IP+ +                 G +P  TQ
Sbjct:   692 NAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQ 751

Query:   242 LQSFDVSSFAGN 253
              Q    SSF  N
Sbjct:   752 FQRQKCSSFLDN 763

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.8e-28, P = 1.8e-28
 Identities = 77/220 (35%), Positives = 129/220 (58%)

Query:     1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
             +G L SL  L L +N L   I  SL+NC+ L ++D+G N+  G +P+W+G + S + +L 
Sbjct:   659 LGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVG-KLSSLFMLR 717

Query:    61 LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             L+SN F G +P  LC++P L+ILD++   +SG IP  I+NLT +    +    V Q L  
Sbjct:   718 LQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTN--NEVFQNLVF 775

Query:   121 PIDVGVILVEKASVVS-KGEMVDYE---DILNLV--RMIDISRNNFSGKIPLEVTNLKAL 174
              +         A+ ++  G  +  E   +IL L+  R++++SRN+ +G IP +++ L  L
Sbjct:   776 IVTRAREYEAIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRL 835

Query:   175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE 214
              +L+ S N F+  IP+S   ++SL+ ++ S N+L G IP+
Sbjct:   836 ETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPK 875

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 2e-24
 Identities = 82/263 (31%), Positives = 112/263 (42%), Gaps = 49/263 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           GS+ +L  L L  N LS +I   + + ++L+ LD+G N  VG IP  +    + +  L L
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTL 195

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            SN+  G +P  L  +  L+ + +   NLSG IP  I  LT +                 
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL----------------- 238

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                          +D+  NN +G IP  + NLK L  L    
Sbjct: 239 -----------------------------NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-T 240
           N  +  IP SI  +  L S+D S N LSGEIPE +  L     L+L +NN TGKIP + T
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 241 QLQSFDVSSFAGNDLCGAPIPKN 263
            L    V     N   G  IPKN
Sbjct: 330 SLPRLQVLQLWSNKFSGE-IPKN 351

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.8 bits (246), Expect = 7e-23
 Identities = 76/239 (31%), Positives = 110/239 (46%), Gaps = 47/239 (19%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +G + SL W+ LG N LS +I   +   T+L  LD+  N   G IP+ +G     +  L 
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLF 266

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L  NK  GP+P  +  L  L  LD++D +LSG IP  +  L  +                
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL---------------- 310

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                   +IL+L        NNF+GKIP+ +T+L  L  L   
Sbjct: 311 ------------------------EILHLFS------NNFTGKIPVALTSLPRLQVLQLW 340

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
            N F+  IP+++G   +L  +D STN L+GEIPE + S      L L +N+L G+IP S
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 1e-21
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 23/223 (10%)

Query: 53  FSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR 112
            SR+V + L      G + + +  LP++Q +++++  LSG IP+ I       T+ S  R
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI------FTTSSSLR 121

Query: 113 SVQQYLPL-------PIDVGVI----LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161
               YL L        I  G I     ++ ++ +  GE+ +     + ++++D+  N   
Sbjct: 122 ----YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF 221
           GKIP  +TNL +L  L  + N    +IP  +G M SL+ I    N LSGEIP  +  LT 
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237

Query: 222 SNHLNLSNNNLTGKIPSST-QLQSFDVSSFAGNDLCGAPIPKN 263
            NHL+L  NNLTG IPSS   L++        N L G PIP +
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPS 279

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 4e-21
 Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 26/250 (10%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           SL  L  L+L  NK S +I  +L     L  LD+  N   G IP  +      +  LIL 
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILF 388

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI-------------NNLTGMVTSCS 109
           SN   G +P  L     L+ + + D + SG +P+               NNL G + S  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 169
           +     Q L L           A     G + D      L   +D+SRN FSG +P ++ 
Sbjct: 449 WDMPSLQMLSL-----------ARNKFFGGLPDSFGSKRL-ENLDLSRNQFSGAVPRKLG 496

Query: 170 NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229
           +L  L  L  S N  +  IP+ +     L S+D S NQLSG+IP S S +   + L+LS 
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

Query: 230 NNLTGKIPSS 239
           N L+G+IP +
Sbjct: 557 NQLSGEIPKN 566

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 7/114 (6%)

Query: 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF 221
           G IP +++ L+ L S+N S NS    IP S+G +TSLE +D S N  +G IPES+  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 222 SNHLNLSNNNLTGKIPSST-----QLQSFDVSSFAGNDLCGAPIPKNCTENVSI 270
              LNL+ N+L+G++P++         SF+ +  AG  LCG P  + C  ++S+
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIPGLRACGPHLSV 543

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 62/274 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVV--- 58
           G+L  L+   L  N L  +I  SL  C +L  + + +N F G +P+     F+++ +   
Sbjct: 380 GNLFKLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS----EFTKLPLVYF 432

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI------------NNLTGMVT 106
           L + +N   G + +R  D+P LQ+L +A     G +P+              N  +G V 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 107 SC--SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164
               S +  +Q  L      G I  E +S          + +++L    D+S N  SG+I
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSC---------KKLVSL----DLSHNQLSGQI 539

Query: 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH 224
           P                         S   M  L  +D S NQLSGEIP+++ ++     
Sbjct: 540 PA------------------------SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 225 LNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCG 257
           +N+S+N+L G +PS+    + + S+ AGN DLCG
Sbjct: 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 19/272 (6%)

Query: 20  DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF 79
           D   +L N   L SLD+  N    NI        + +  L L +N     +P  +  L  
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISEL--LELTNLTSLDLDNNNI-TDIPPLIGLLKS 140

Query: 80  -LQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLPIDVGVILVEKASVVSK 137
            L+ LD++D  +  ++P+ + NL  +     SF         LP  +  +       +S 
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD----LPKLLSNLSNLNNLDLSG 195

Query: 138 GEMVDYEDILNLVR---MIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV 194
            ++ D    + L+     +D+S N+   ++   ++NLK L  L  S N     +PESIG 
Sbjct: 196 NKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGN 253

Query: 195 MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND 254
           +++LE++D S NQ+S     S+ SLT    L+LS N+L+  +P    L            
Sbjct: 254 LSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL-NLL 310

Query: 255 LCGAPIP-KNCTENVSIFEDENGDEDEDEVDH 285
           L    +  K  +  ++     NG+    E   
Sbjct: 311 LTLKALELKLNSILLNNNILSNGETSSPEALS 342

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  L  L  + L  N +  +I  SL + T+LE LD+  N F G+IP  +G+  + + +L 
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILN 496

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINN 100
           L  N   G +P  L               L  A  N+ +N
Sbjct: 497 LNGNSLSGRVPAALGGRL-----------LHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
           L SL+ S N  T     +   + +L+ +D S N L+   PE+ S L     L+LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           + S   LV L L  N+LS  I  S      L  LD+ +N+  G IP  +G     +V + 
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVN 577

Query: 61  LRSNKFHGPLPT 72
           +  N  HG LP+
Sbjct: 578 ISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 206 NQ-LSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVS--SFAG 252
           NQ L G IP  +S L     +NLS N++ G IP S    T L+  D+S  SF G
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
PLN03150	623	hypothetical protein; Provisional	99.67
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
PLN03150	623	hypothetical protein; Provisional	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.1
smart00370	26	LRR Leucine-rich repeats, outliers.	95.55
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.18
KOG4308	478	consensus LRR-containing protein [Function unknown	94.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.54
KOG4308	478	consensus LRR-containing protein [Function unknown	93.78
smart00370	26	LRR Leucine-rich repeats, outliers.	93.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.91
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.53
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.01
PF15102	146	TMEM154: TMEM154 protein family	83.66

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.2e-32  Score=265.92  Aligned_cols=256  Identities=30%  Similarity=0.429  Sum_probs=157.0

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      .++++|+.|++++|.+++..|..+..+++|+.|++++|++.+.+|..+. .+++|+.|++++|++.+..|..+..+++|+
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~  407 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLR  407 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence            4567777777777777777777777777777777777777766666655 566666666666666666666566666666


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCC------------------------CCcc-ceeeeeeeeeee
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL------------------------PIDV-GVILVEKASVVS  136 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~------------------------~~~~-~~~~~~~~~~~~  136 (312)
                      .|++++|.+++..|..+..++.|+.+++.+|.+.+..+.                        .... ....++...+..
T Consensus       408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l  487 (968)
T PLN00113        408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF  487 (968)
T ss_pred             EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence            666666666555555566666666666655555443322                        1111 001111111112


Q ss_pred             cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128          137 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM  216 (312)
Q Consensus       137 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  216 (312)
                      .+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+
T Consensus       488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            23334445556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCC
Q 047128          217 SSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGA  258 (312)
Q Consensus       217 ~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~  258 (312)
                      ..+..|+.+++++|++++.+|..+.+..+....+.+| .+|+.
T Consensus       568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence            6666666666666666666666655555555556666 35543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.5e-29  Score=249.85  Aligned_cols=255  Identities=30%  Similarity=0.431  Sum_probs=216.1

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      +.++++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|++++..|..+..+++|
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            35688999999999999989999999999999999999999989999887 89999999999999999999999999999


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc--eeeeeeeeee-----------------------
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG--VILVEKASVV-----------------------  135 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~--~~~~~~~~~~-----------------------  135 (312)
                      +.|++++|.+.+..|..+..+++|+.+++.+|.+.+..+..+...  ........+.                       
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN  462 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence            999999999999999999999999999999999886555433211  0011100000                       


Q ss_pred             -ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128          136 -SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       136 -~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                       ..+..+..+ ..++|+.|++++|++++..|..+.++++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|.
T Consensus       463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence             011112211 246788899999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128          215 SMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      .+..+++|+.|++++|++++.+|.. ..+..++.+++++|.+.+
T Consensus       542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999887765 678889999999997765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-27  Score=206.20  Aligned_cols=250  Identities=18%  Similarity=0.160  Sum_probs=127.0

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ++++|+|++|+|+......|.++.+|..|.|+.|+++ .+|...|+++++|+.|+|..|++...-...|.++++|+.|.+
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            3555555555555444445555555555555555555 555555544555555555555555222334555555555555


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccc-eeee-eeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG-VILV-EKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ..|.+.......|-.+.+++.++++.|++...-..-.+.. .... ....+.......+.-...++|+.|+|+.|+|+..
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            5555544444445555555555555555443222111100 0000 0000000000111112234455555555555544


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc---cccCCCCCCeEecccCcccccCCCC-
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE---SMSSLTFSNHLNLSNNNLTGKIPSS-  239 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~~~~-  239 (312)
                      .+.+|..+..|++|+|++|.+....-..|..+.+|++|||++|.++..+.+   .|..+++|+.|++.+|++....... 
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf  412 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF  412 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence            555555555555555555555533344556667777777777777654433   3566777777777777776443332 


Q ss_pred             CCCCCCccccccCCCCC
Q 047128          240 TQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       240 ~~l~~l~~~~l~~n~l~  256 (312)
                      ..+..|+.+++.+|.+.
T Consensus       413 sgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIA  429 (873)
T ss_pred             ccCcccceecCCCCcce
Confidence            56777777777777544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=5.8e-27  Score=204.80  Aligned_cols=258  Identities=19%  Similarity=0.217  Sum_probs=181.9

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++.+|..|.|+.|+|+...+..|+++++|+.|+|..|+|. .+-...|+++++|+.|.+..|.+...-...|..+.++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km  271 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM  271 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence            556777888888888887666677777888888888888776 5544455567777777777777665445556667777


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCC--CccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP--IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  158 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  158 (312)
                      ++|++..|+++..-..++-+++.|+.|+++.|.+.+.....  +......+....+....-....+..+..|+.|+|+.|
T Consensus       272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            77777777766555556666777777777776666433221  1112222222222223333556677889999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCCCccccC---hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128          159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIP---ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                      .++..-..+|..+.+|++|||++|.+++.+-   ..|..+++|+.|++.+|++.......|..++.|++|||.+|.|...
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence            9997777789999999999999999986554   3467899999999999999954456899999999999999999876


Q ss_pred             CCCCCCCCCCccccccCC-CCCCCC
Q 047128          236 IPSSTQLQSFDVSSFAGN-DLCGAP  259 (312)
Q Consensus       236 ~~~~~~l~~l~~~~l~~n-~l~~~p  259 (312)
                      -+....-..|+.+.+..- -+|++.
T Consensus       432 q~nAFe~m~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  432 QPNAFEPMELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             cccccccchhhhhhhcccceEEecc
Confidence            665533236666655443 556543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=3e-26  Score=202.10  Aligned_cols=251  Identities=26%  Similarity=0.315  Sum_probs=196.5

Q ss_pred             CCCCCcCEEECCCCccc-ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            2 GSLTSLVWLRLGKNKLS-VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      +.++.|+.+++++|++. .-+|..+..+..|..||||+|++. ++|..+. .-+++-.|+||+|+|..+.-..|.++..|
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhH
Confidence            56888999999999885 236777778999999999999999 9999987 78899999999999994433447788999


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccc--cCCCCccceeeeeeeeee--ecCcccchHHHhccccEEEcC
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY--LPLPIDVGVILVEKASVV--SKGEMVDYEDILNLVRMIDIS  156 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~ls  156 (312)
                      -.||+|+|++. .+|.....+..|++|.+++|.+...  ...+.-.. ....+.+..  .-..++.....+.+|+.+|+|
T Consensus       153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            99999999998 7888899999999999999987621  11111111 111111111  123456666778899999999


Q ss_pred             CCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccc--c
Q 047128          157 RNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT--G  234 (312)
Q Consensus       157 ~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~  234 (312)
                      .|.+. ..|+.+.++++|+.|+||+|+|+ .+....+.+.+|++|++|+|+++ ..|+.+..++.|+.|++.+|+++  |
T Consensus       231 ~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  231 ENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             ccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence            99999 89999999999999999999998 66666677889999999999999 88999999999999999999764  6


Q ss_pred             cCCCCCCCCCCccccccCCCCCCCC
Q 047128          235 KIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       235 ~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                      .+..++.+..|+.+...+|.+.-.|
T Consensus       308 iPSGIGKL~~Levf~aanN~LElVP  332 (1255)
T KOG0444|consen  308 IPSGIGKLIQLEVFHAANNKLELVP  332 (1255)
T ss_pred             CccchhhhhhhHHHHhhccccccCc
Confidence            6666677888888777777555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.7e-24  Score=189.06  Aligned_cols=252  Identities=22%  Similarity=0.315  Sum_probs=186.8

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      ++..|+.|||++|+++ .+|..+..-+++-+|+||+|.|. .||..++.++..|-.||||+|++. .+|+.+..+.+|++
T Consensus       101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT  177 (1255)
T ss_pred             ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence            5678899999999998 78888888888999999999998 899888888888888899999888 66766777777777


Q ss_pred             EEccCCCCCc-------------------------ccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeee-
Q 047128           83 LDIADTNLSG-------------------------AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVS-  136 (312)
Q Consensus        83 L~l~~n~l~~-------------------------~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~-  136 (312)
                      |++++|.+..                         -+|.++..+.+|..++++.|++......-...  ..+..++.+. 
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l--~~LrrLNLS~N  255 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL--RNLRRLNLSGN  255 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh--hhhheeccCcC
Confidence            7777775421                         24455566666666677777665432111110  0000111100 


Q ss_pred             -cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCc
Q 047128          137 -KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       137 -~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                       -.+.......+.+|+.|++|+|+++ ..|++++++++|+.|.+.+|+++ ..+|..++++.+|+.+..++|.+. ..|+
T Consensus       256 ~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE  333 (1255)
T KOG0444|consen  256 KITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE  333 (1255)
T ss_pred             ceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCch
Confidence             0112223345667888888888888 78889999999999999999875 357888889999999999999988 8899


Q ss_pred             cccCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCCCCC
Q 047128          215 SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPIP  261 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~p~~  261 (312)
                      .++.++.|+.|.|++|++-..+..+..++.++.+++..| .+.-.|.+
T Consensus       334 glcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  334 GLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             hhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence            999999999999999998866666677888899999998 66655544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=2.2e-24  Score=181.16  Aligned_cols=247  Identities=26%  Similarity=0.377  Sum_probs=171.0

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      +.+.+|..|+|..|.|. ..| .|.++..|+++.++.|++. .+|....+.++++..||++.|+++ ..|+.+.-+.+|+
T Consensus       203 g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~  278 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE  278 (565)
T ss_pred             cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence            56777788888888887 555 7888888888888888888 899888888999999999999999 8899999999999


Q ss_pred             EEEccCCCCCcccchhhHhhccccccccccccccccc---------------CC-----CCc----ccee----------
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL---------------PL-----PID----VGVI----------  127 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~---------------~~-----~~~----~~~~----------  127 (312)
                      +||+|+|.++ .+|..++++ +|+.+.+.+|.+....               ..     ...    ....          
T Consensus       279 rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~  356 (565)
T KOG0472|consen  279 RLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP  356 (565)
T ss_pred             hhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence            9999999998 788889999 9999999988765210               00     000    0000          


Q ss_pred             -----------eeeeeeee--------------------ecC---------------------------cccchHHHhcc
Q 047128          128 -----------LVEKASVV--------------------SKG---------------------------EMVDYEDILNL  149 (312)
Q Consensus       128 -----------~~~~~~~~--------------------~~~---------------------------~~~~~~~~~~~  149 (312)
                                 ........                    ...                           -.+...+.+++
T Consensus       357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k  436 (565)
T KOG0472|consen  357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK  436 (565)
T ss_pred             chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence                       00000000                    000                           00112233455


Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      |+.|++++|.+. .+|..++.+..|+.|+++.|+|. .+|....-+..++.+-.++|++....|+.+..+.+|+.||+.+
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            555555555555 45555555555666666666554 5555544444455555555666644455577888999999999


Q ss_pred             CcccccCCCCCCCCCCccccccCCCCC
Q 047128          230 NNLTGKIPSSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       230 N~l~~~~~~~~~l~~l~~~~l~~n~l~  256 (312)
                      |.+...+|..+.+.+++.+.+.||++.
T Consensus       515 Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CchhhCChhhccccceeEEEecCCccC
Confidence            999988888889999999999999776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=2.4e-24  Score=180.92  Aligned_cols=239  Identities=23%  Similarity=0.318  Sum_probs=125.6

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      |+.+++++|.+. ...+.+.++..|.++++++|++. .+|.+++ .+..++.++.+.|++. .+|..+..+.+|+.++.+
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            444555555554 23334445555555555555555 5555554 4455555555555554 444444445555555555


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccce-eeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV-ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      +|.+. .+|+.++.+..+..++..+|++........+... .......+......+... .|+.|++||...|-++ .+|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCC
Confidence            55444 4444444444444444444444322221111100 000000000001111111 2444555555554444 344


Q ss_pred             hhhhcC----------------------CCCCEEEccCCCCccccChhh-cCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128          166 LEVTNL----------------------KALHSLNFSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPESMSSLTFS  222 (312)
Q Consensus       166 ~~~~~l----------------------~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  222 (312)
                      +.++.+                      ..|.+++++.|.|. .+|... .+++++..||+.+|+++ +.|+.+.-+.+|
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL  277 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL  277 (565)
T ss_pred             hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence            444444                      44455555555544 444443 37788888888888888 788888888888


Q ss_pred             CeEecccCcccccCCCCCCCCCCccccccCCCC
Q 047128          223 NHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL  255 (312)
Q Consensus       223 ~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l  255 (312)
                      .+||+++|.|++.+++.+.+ ++..+.+.||++
T Consensus       278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            88888888888888888777 788888888854

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=3e-23  Score=173.87  Aligned_cols=229  Identities=17%  Similarity=0.155  Sum_probs=157.6

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccC-CcccccCCcCCCCCCCCcEEEc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      -..++|..|+|+.+.+.+|+.+++|++|||++|.|+ .|.++.|++++++..|-+.+ |+|+......|.++..|+.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345777777777666777777777777777777777 66666666777766655544 7777444445677777777777


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCcc-----------------------------ceeeeeeeeee-
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV-----------------------------GVILVEKASVV-  135 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----------------------------~~~~~~~~~~~-  135 (312)
                      .-|++.-...+.|..++++..|.+..|.+.......+..                             ........... 
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            666666555666666666666655555443221111000                             00000000000 


Q ss_pred             ----------------------------------ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccC
Q 047128          136 ----------------------------------SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY  181 (312)
Q Consensus       136 ----------------------------------~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~  181 (312)
                                                        ...-....|..+++|+.|++++|+++++-+.+|.....+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                                              0001123567789999999999999988888999999999999999


Q ss_pred             CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128          182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI  236 (312)
Q Consensus       182 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  236 (312)
                      |++.......|.++..|+.|+|.+|+|+..-|..|..+..|.+|++-.|++.+.+
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            9998555667888999999999999999888889999999999999999987654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=2.8e-21  Score=162.18  Aligned_cols=235  Identities=17%  Similarity=0.165  Sum_probs=166.8

Q ss_pred             CCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC-CCCCc
Q 047128           14 KNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD-TNLSG   92 (312)
Q Consensus        14 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~   92 (312)
                      +-.++ .+|..+-  +.-..++|..|+|+ .||+..|+.+++|+.||||+|+|+.+.|.+|.++++|..|.+-+ |+|+.
T Consensus        55 ~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   55 GKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            33444 4554432  34568999999999 99999999999999999999999999999999999987776655 99996


Q ss_pred             ccchhhHhhcccccccccccccccccCCCCccc-----e-eeeeeeeeeecCcccchHHHhccccEEEcC----------
Q 047128           93 AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG-----V-ILVEKASVVSKGEMVDYEDILNLVRMIDIS----------  156 (312)
Q Consensus        93 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls----------  156 (312)
                      .....|+++..++.|.+.-|.+.-.....+...     . .+......+..+.    +..+..++.+.+.          
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t----f~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT----FQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc----ccchhccchHhhhcCcccccccc
Confidence            666799999999999988877663322111100     0 0000011111100    0001111111111          


Q ss_pred             ---------------------------------------------------CCcccccCC-hhhhcCCCCCEEEccCCCC
Q 047128          157 ---------------------------------------------------RNNFSGKIP-LEVTNLKALHSLNFSYNSF  184 (312)
Q Consensus       157 ---------------------------------------------------~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l  184 (312)
                                                                         .....+.-| ..|..+++|++|+|++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                                                               111222333 4678999999999999999


Q ss_pred             ccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128          185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       185 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~  256 (312)
                      ++.-+.+|.+...+++|.|..|++.......|..+..|+.|+|.+|+|++..|.. ..+..+..+.+-.|+++
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9888999999999999999999999777778999999999999999999877765 45666777777777443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=6.1e-22  Score=148.52  Aligned_cols=185  Identities=22%  Similarity=0.396  Sum_probs=140.1

Q ss_pred             cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128           24 SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG  103 (312)
Q Consensus        24 ~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  103 (312)
                      .+.++.+++.|.+++|+++ .+|..+. .+.+|+.|++++|+++ .+|..++.+++|+.|+++.|++. ..|..|+.++.
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            3455677777888888888 7787776 7888888888888887 67777888888888888888877 77888888888


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS  183 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~  183 (312)
                      |+.+++.+|++...                     ..+.-|-.+..|+.|.+++|.+. .+|..++++++|+.|.+..|.
T Consensus       104 levldltynnl~e~---------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  104 LEVLDLTYNNLNEN---------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhhhccccccccc---------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            88777777776521                     12222334666888888899888 788888999999999999998


Q ss_pred             CccccChhhcCCCCCcEEECCCccCCccCCccccCCCC---CCeEecccCcccccC
Q 047128          184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF---SNHLNLSNNNLTGKI  236 (312)
Q Consensus       184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~l~~N~l~~~~  236 (312)
                      +- ..|..++.++.|++|.+.+|.++ .+|..++.+.-   =+.+.+.+|++..++
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            86 78888899999999999999998 77766655432   244667777765433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=8.7e-19  Score=165.02  Aligned_cols=224  Identities=20%  Similarity=0.305  Sum_probs=108.9

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      +|+.|+|++|.++ .+|..+.  ++|++|++++|.++ .+|..+.   .+|+.|++++|+++ .+|..+.  .+|++|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            4666666666666 3443332  35666666666666 6665543   35666666666666 4555443  35666777


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ++|+++ .+|..+.  .+|+.|++.+|.+.... ..+......+....+.... ++.  ...++|+.|++++|.++. +|
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~lp~sL~~L~Ls~N~Lt~-LP~--~l~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLP-AHLPSGITHLNVQSNSLTA-LPE--TLPPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccccCc-ccchhhHHHHHhcCCcccc-CCc--cccccceeccccCCcccc-CC
Confidence            766666 3444332  35666666666655321 1111000000000000000 000  012345556666665552 44


Q ss_pred             hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC----CC
Q 047128          166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQ  241 (312)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~----~~  241 (312)
                      ..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|+++ .+|..+.  ..|+.|++++|+++..+...    ..
T Consensus       342 ~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~  413 (754)
T PRK15370        342 ASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGE  413 (754)
T ss_pred             hhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhc
Confidence            3332  45666666666655 444433  245666666666665 3444332  24555666666655332221    12


Q ss_pred             CCCCccccccCCCC
Q 047128          242 LQSFDVSSFAGNDL  255 (312)
Q Consensus       242 l~~l~~~~l~~n~l  255 (312)
                      ...+..+++.+|++
T Consensus       414 ~~~l~~L~L~~Npl  427 (754)
T PRK15370        414 GPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCccEEEeeCCCc
Confidence            23344455555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=1.5e-20  Score=172.55  Aligned_cols=240  Identities=23%  Similarity=0.301  Sum_probs=153.5

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|+.|+..+|.++...+.  .--.+|++++++.|+++ .+|+++. .+.+|+.++..+|+++ .+|..+....+|+.|.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLS  293 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence            4455555556655422211  11234566666666666 5665555 5666666666666664 4555555555555555


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---------------------------eeeeeeeeeeec
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---------------------------VILVEKASVVSK  137 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~  137 (312)
                      +.+|.+. .+|.....+.+|++|++..|.+.......+...                           ...+....+...
T Consensus       294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            5555554 344444445555555555554442211000000                           000011111223


Q ss_pred             CcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128          138 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMS  217 (312)
Q Consensus       138 ~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~  217 (312)
                      ..+...+..+++|+.|++++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence            344556677899999999999999555567789999999999999998 88999999999999999999999 778 688


Q ss_pred             CCCCCCeEecccCccccc-CCCCCCCCCCccccccCC
Q 047128          218 SLTFSNHLNLSNNNLTGK-IPSSTQLQSFDVSSFAGN  253 (312)
Q Consensus       218 ~l~~L~~L~l~~N~l~~~-~~~~~~l~~l~~~~l~~n  253 (312)
                      .++.|+.+|++.|+++.. ++.....++|+.++++||
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            999999999999999853 333333378999999999

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=1.9e-20  Score=140.54  Aligned_cols=163  Identities=21%  Similarity=0.377  Sum_probs=145.7

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++.+.|-|++|+++ .+|..++.+.+|+.|++++|+++ .+|..+. .++.|+.|++..|++. .+|..|+.+|.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4567788999999998 67778999999999999999999 9999998 8999999999999998 89999999999999


Q ss_pred             EEccCCCCC-cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           83 LDIADTNLS-GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        83 L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      ||+++|++. ..+|..|..+..|+.+++..|.+.-                       .+.....+++|+.|.+.+|.+-
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-----------------------lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-----------------------LPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCccc-----------------------CChhhhhhcceeEEeeccCchh
Confidence            999999885 4789999999999999999998863                       2444567889999999999998


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcC
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV  194 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  194 (312)
                       ..|..++.+..|++|.+.+|+++ .+|..++.
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence             79999999999999999999998 66665544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=5.8e-18  Score=158.86  Aligned_cols=220  Identities=20%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      |+.|++.+|+++. +|.   .+++|++|++++|+++ .+|..    .++|+.|++++|.++ .+|..   ..+|+.|+++
T Consensus       224 L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        224 ITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            4455555555542 232   1345555555555555 44421    234444444444444 22221   1345555555


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      +|+++ .+|.   ..++|+.|++.+|.+......+....  .+....+... .++   ..+.+|++|++++|++++ +|.
T Consensus       291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~--~L~Ls~N~L~-~LP---~lp~~Lq~LdLS~N~Ls~-LP~  359 (788)
T PRK15387        291 GNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELC--KLWAYNNQLT-SLP---TLPSGLQELSVSDNQLAS-LPT  359 (788)
T ss_pred             CCccc-cccc---cccccceeECCCCccccCCCCccccc--ccccccCccc-ccc---ccccccceEecCCCccCC-CCC
Confidence            55555 3332   23556666776666654322111100  0000000000 011   112356677777777663 332


Q ss_pred             hhh-----------------cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          167 EVT-----------------NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       167 ~~~-----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      ...                 ...+|+.|++++|+++ .+|..   .++|+.|++++|+++ .+|..   ..+|+.|++++
T Consensus       360 lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~  431 (788)
T PRK15387        360 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYR  431 (788)
T ss_pred             CCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhcc
Confidence            111                 1124555555555555 34432   245666666666666 34542   23566677777


Q ss_pred             CcccccCCCCCCCCCCccccccCCCCCCC
Q 047128          230 NNLTGKIPSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       230 N~l~~~~~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                      |+++..+.....+.++..+++++|++++.
T Consensus       432 NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        432 NQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CcccccChHHhhccCCCeEECCCCCCCch
Confidence            77765444446677777788888877754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4e-18  Score=160.55  Aligned_cols=206  Identities=21%  Similarity=0.347  Sum_probs=151.9

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.   .+|+.|++++|+++ .+|..+.  ++|++|+
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~  289 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLS  289 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence            57999999999998 4565553  47999999999999 9998875   58999999999999 5777664  5899999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|+++ .+|..+.  ..|+.|++.+|.+... +.........+....+.... ++..  ..++|+.|++++|+++ .+
T Consensus       290 Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l~~sL~~L~Ls~N~Lt~-LP~~--l~~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        290 VYDNSIR-TLPAHLP--SGITHLNVQSNSLTAL-PETLPPGLKTLEAGENALTS-LPAS--LPPELQVLDVSKNQIT-VL  361 (754)
T ss_pred             CCCCccc-cCcccch--hhHHHHHhcCCccccC-CccccccceeccccCCcccc-CChh--hcCcccEEECCCCCCC-cC
Confidence            9999998 4554432  4688888999888753 22222111111111111111 1211  1368999999999998 56


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc----cCCCCCCeEecccCcccc
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM----SSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~L~l~~N~l~~  234 (312)
                      |..+  .++|++|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+    ...+.+..+++.+|+++.
T Consensus       362 P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        362 PETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            7655  379999999999998 6776654  47999999999998 666544    345888999999999873

>PLN03210 Resistant to P

Probab=99.74  E-value=8.2e-17  Score=160.78  Aligned_cols=244  Identities=18%  Similarity=0.211  Sum_probs=140.8

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      ..+|++|++++|.+. ..+..+..+++|++++++++...+.+|. +. .+++|+.|++++|.....+|..+..+++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            467888888888876 5666777788888888887654447774 33 67888888888876555777778888888888


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCc-ccee-----------------eeeeeeeee---------
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID-VGVI-----------------LVEKASVVS---------  136 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~-----------------~~~~~~~~~---------  136 (312)
                      ++++|..-..+|..+ ++++|+.|++.+|......+.... ....                 .+..+....         
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence            888764333555543 567777777766643322211000 0000                 000000000         


Q ss_pred             -cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEE--------------
Q 047128          137 -KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESI--------------  201 (312)
Q Consensus       137 -~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L--------------  201 (312)
                       ....+.....+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|... .+++|+.|              
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence             00001111224567788888877666777778888888888888764323555433 34444444              


Q ss_pred             -------ECCCccCCccCCccccCCCCCCeEeccc-CcccccCCCCCCCCCCccccccCC
Q 047128          202 -------DFSTNQLSGEIPESMSSLTFSNHLNLSN-NNLTGKIPSSTQLQSFDVSSFAGN  253 (312)
Q Consensus       202 -------~l~~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~~~~~~l~~l~~~~l~~n  253 (312)
                             ++++|.++ .+|.++..+++|+.|++++ |++.+.++....+++++.+++.++
T Consensus       845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence                   44445554 4455555555566665554 344443333344555555555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.72  E-value=9.5e-17  Score=160.32  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=154.1

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      |+.|.+.++.++ ..|..| ...+|++|++++|.+. .++.++. .+++|+.|+++++.....+|. +..+++|++|+++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS  665 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence            555555555554 445444 3567888888888887 7777765 788888888887764446664 7778889999998


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      +|.....+|..+..+++|+.|++.+|.....++..+.  ...+..+..........+.....+|+.|++++|.+. .+|.
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~--l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~  742 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN--LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPS  742 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC--CCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccc
Confidence            8765567888888899999999888754444443321  111111111111111111122456778888888776 3443


Q ss_pred             hh------------------------------hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128          167 EV------------------------------TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM  216 (312)
Q Consensus       167 ~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  216 (312)
                      .+                              ...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            22                              112467777777776555677777788888888888765433666654


Q ss_pred             cCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128          217 SSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       217 ~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                       .+++|+.|++++|.....+|..  ..+++.+++.+|.+...|
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP  862 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP  862 (1153)
T ss_pred             -CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh
Confidence             5777888888876544444432  356777788888776655

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=4.5e-17  Score=152.90  Aligned_cols=206  Identities=22%  Similarity=0.274  Sum_probs=128.9

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      .++|++|++++|+++. +|..   .++|+.|++++|.+. .+|..    ..+|+.|++++|+++ .+|..   .++|+.|
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~L  307 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQEL  307 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccc-ccccc---cccccee
Confidence            4688999999999984 4532   346667777777666 55542    234555555555555 33321   2445555


Q ss_pred             EccCCCCCcccchhhH-----------------hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128           84 DIADTNLSGAIPNWIN-----------------NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI  146 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~-----------------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      ++++|.++. +|....                 ...+|+.|++.+|.+........  ....+....+... .++   ..
T Consensus       308 dLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~--~L~~L~Ls~N~L~-~LP---~l  380 (788)
T PRK15387        308 SVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPS--ELYKLWAYNNRLT-SLP---AL  380 (788)
T ss_pred             ECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCc--ccceehhhccccc-cCc---cc
Confidence            555555542 221100                 01356667777776664322111  1111111111111 111   22


Q ss_pred             hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEe
Q 047128          147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLN  226 (312)
Q Consensus       147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  226 (312)
                      +.+|+.|++++|.+++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+..++.|+.++
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            4579999999999994 5543   368999999999998 57763   357899999999999 7899999999999999


Q ss_pred             cccCcccccCCC
Q 047128          227 LSNNNLTGKIPS  238 (312)
Q Consensus       227 l~~N~l~~~~~~  238 (312)
                      +++|++++..+.
T Consensus       452 Ls~N~Ls~~~~~  463 (788)
T PRK15387        452 LEGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCCchHHH
Confidence            999999976543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.70  E-value=1.5e-19  Score=166.06  Aligned_cols=244  Identities=20%  Similarity=0.252  Sum_probs=189.2

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ..+.+|+.+....|+++...    ..-++|+.|+.++|.++ .+....  .-.+|+.++++.|+++ .+|+.+..+.+|+
T Consensus       196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLE  267 (1081)
T ss_pred             hhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccce
Confidence            35677788888888876432    23467999999999998 433332  3578999999999999 6788899999999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccce-eeeeeeeeeecC---------------------c
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV-ILVEKASVVSKG---------------------E  139 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~  139 (312)
                      .++..+|.+. .+|..+....+|+.+.+..|.+....+....... ..++.-.+....                     .
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            9999999996 8888999999999999999998876655543221 111111111000                     0


Q ss_pred             c---c-chHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh-hhcCCCCCcEEECCCccCCccCCc
Q 047128          140 M---V-DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE-SIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       140 ~---~-~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                      .   + .-...++.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++. .+|+ .+.+++.|++|++|+|+++ .+|+
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~  424 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPD  424 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence            0   0 01123456888999999998777778889999999999999998 5555 5689999999999999999 8999


Q ss_pred             cccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCC
Q 047128          215 SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~  257 (312)
                      .+..++.|++|...+|++...+ ...++..++.+|++.|.+..
T Consensus       425 tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            9999999999999999999655 77889999999999996654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.1e-18  Score=149.91  Aligned_cols=236  Identities=17%  Similarity=0.168  Sum_probs=144.4

Q ss_pred             CCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCC------CCChhHHhcCCCCcEEEccCCcccccCCcC
Q 047128            4 LTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVG------NIPTWIGERFSRMVVLILRSNKFHGPLPTR   73 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~   73 (312)
                      ++.|++++++++.++..    ++..+...+.+++++++++.+.+      .++..+. .+++|+.|++++|.+....+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCCCChhHHHH
Confidence            45677888888877432    34456667778888888877651      1222333 5678888888888876444444


Q ss_pred             CCCCCC---CcEEEccCCCCCc----ccchhhHhh-cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHH
Q 047128           74 LCDLPF---LQILDIADTNLSG----AIPNWINNL-TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED  145 (312)
Q Consensus        74 ~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (312)
                      +..+..   |++|++++|.+..    .+...+..+ ++|+.+++.+|.+.....                  ......+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------~~~~~~~~  162 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------------------EALAKALR  162 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------------------HHHHHHHH
Confidence            443433   8888888887763    122334455 677777777777652110                  01122334


Q ss_pred             HhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128          146 ILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEIPESMS  217 (312)
Q Consensus       146 ~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~  217 (312)
                      .+++|++|++++|.+++.    ++..+...++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            456788888888887742    233445556888888888887633    233445667888888888888753322222


Q ss_pred             -----CCCCCCeEecccCcccc--c---CCCCCCCCCCccccccCCCCCCC
Q 047128          218 -----SLTFSNHLNLSNNNLTG--K---IPSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       218 -----~l~~L~~L~l~~N~l~~--~---~~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                           ..+.|++|++++|.++.  .   ......+.+++.+++++|.+...
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence                 23678888888888761  1   11113346677778888866644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.7e-17  Score=144.19  Aligned_cols=213  Identities=20%  Similarity=0.219  Sum_probs=154.2

Q ss_pred             CCCCcCEEECCCCccc------ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCC---CcEEEccCCcccc----c
Q 047128            3 SLTSLVWLRLGKNKLS------VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSR---MVVLILRSNKFHG----P   69 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~------~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~---L~~L~L~~n~l~~----~   69 (312)
                      ..+++++++++++.+.      ..++..+..+++|++|++++|.+.+..+..+. .+..   |++|++++|++..    .
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHH
Confidence            4677999999999876      23445677899999999999999855555544 4554   9999999999873    2


Q ss_pred             CCcCCCCC-CCCcEEEccCCCCCcc----cchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchH
Q 047128           70 LPTRLCDL-PFLQILDIADTNLSGA----IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE  144 (312)
Q Consensus        70 ~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (312)
                      +...+..+ ++|+.|++++|.+++.    .+..+..++.|+.+++.+|.+.....                  ......+
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------~~l~~~l  189 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI------------------RALAEGL  189 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH------------------HHHHHHH
Confidence            23345566 8999999999998843    33456677789999999887753100                  0011122


Q ss_pred             HHhccccEEEcCCCcccccC----ChhhhcCCCCCEEEccCCCCccccChhhc-----CCCCCcEEECCCccCCcc----
Q 047128          145 DILNLVRMIDISRNNFSGKI----PLEVTNLKALHSLNFSYNSFTRRIPESIG-----VMTSLESIDFSTNQLSGE----  211 (312)
Q Consensus       145 ~~~~~L~~L~ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~----  211 (312)
                      ...++|+.|++++|.+++..    +..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++..    
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~  269 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD  269 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence            33458999999999987443    34456788999999999999753332222     247999999999999722    


Q ss_pred             CCccccCCCCCCeEecccCcccc
Q 047128          212 IPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       212 ~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      +...+...++|+++++++|+++.
T Consensus       270 l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         270 LAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHhcCCCccEEECCCCCCcH
Confidence            33445567899999999999984

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.67  E-value=4.9e-16  Score=145.52  Aligned_cols=117  Identities=37%  Similarity=0.640  Sum_probs=103.3

Q ss_pred             cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++++.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCC-C-CCCCCccccccCC-CCCCCCCCCCCC
Q 047128          229 NNNLTGKIPSS-T-QLQSFDVSSFAGN-DLCGAPIPKNCT  265 (312)
Q Consensus       229 ~N~l~~~~~~~-~-~l~~l~~~~l~~n-~l~~~p~~~~c~  265 (312)
                      +|+++|.+|.. . ...++..+++.+| .+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999988865 2 2334556778888 688877655664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.55  E-value=1.2e-16  Score=140.27  Aligned_cols=181  Identities=24%  Similarity=0.406  Sum_probs=126.7

Q ss_pred             CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      .+..-...|++.|++. .+|..+. .+..|+.+.+..|.+. .+|..++.+..|+++|++.|+++ .+|..+..++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3444456677777777 7777765 5677777777777777 66677777777777777777776 5555554443 444


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR  186 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~  186 (312)
                      +.+.+|.+...                       +........|..||.+.|.+. ..|..++.+.+|+.|++..|++. 
T Consensus       148 li~sNNkl~~l-----------------------p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-  202 (722)
T KOG0532|consen  148 LIVSNNKLTSL-----------------------PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-  202 (722)
T ss_pred             EEEecCccccC-----------------------CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence            44444443321                       111112455777888888888 67777888888888888888887 


Q ss_pred             ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      .+|..+..++ |..||++.|+++ .+|-.|..|.+|++|.|.+|++..++...
T Consensus       203 ~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  203 DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            7777777554 788888988888 78888888888888888888888665544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.53  E-value=1.8e-16  Score=139.19  Aligned_cols=192  Identities=25%  Similarity=0.369  Sum_probs=153.7

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      -...||+.|++. .+|..+..+..|+.+.+..|.+. .+|..+. .+..|+.+|++.|++. .+|..++.++ |+.|.++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            346788888887 67777777777888888889888 8888887 7889999999999988 7888888777 8888899


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      +|+++ .+|+.++.+..|..++...|.+...                       +.-...+.+|+.|.+.+|++. .+|+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-----------------------psql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-----------------------PSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhhc-----------------------hHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            99888 7788888888888888888876532                       222344667888999999999 6777


Q ss_pred             hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC---CCeEecccCc
Q 047128          167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF---SNHLNLSNNN  231 (312)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~l~~N~  231 (312)
                      .+. .-.|..||+|.|++. .+|-.|.++..|++|-|.+|.+. ..|..+.....   -++|+.+-++
T Consensus       207 El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  207 ELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            776 456889999999998 99999999999999999999999 77777654333   3556666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.48  E-value=5.2e-14  Score=125.96  Aligned_cols=199  Identities=33%  Similarity=0.502  Sum_probs=146.8

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCC-CCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS-RMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      .+++..+.+.. ....+..++.++.+++.+|.++ .++.... .+. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            46777777642 2334555677888888888888 8887765 453 8888888888888 5656678888888888888


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      |++. .+|......+.|+.+++++|.+.....                       ....+..|+++.+++|.+. ..+..
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-----------------------~~~~~~~L~~l~~~~N~~~-~~~~~  227 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-----------------------EIELLSALEELDLSNNSII-ELLSS  227 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccccCch-----------------------hhhhhhhhhhhhhcCCcce-ecchh
Confidence            8887 555555578888888888887764322                       1123445888888888655 45666


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      +.++.++..+.+.+|++. ..+..++.+++++.|++++|.++ .++. +..+.+++.+++++|.+....+..
T Consensus       228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            788888888888888886 55677778888999999999988 4544 778888999999998887655544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.45  E-value=1.2e-13  Score=123.67  Aligned_cols=195  Identities=25%  Similarity=0.366  Sum_probs=159.2

Q ss_pred             EEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCC-CCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128           33 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLP-FLQILDIADTNLSGAIPNWINNLTGMVTSCSFT  111 (312)
Q Consensus        33 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  111 (312)
                      .+++..|.+. .-...+. .++.++.|++.+|+++ .++....... +|+.|++++|.+. .+|.....++.|+.|++..
T Consensus        97 ~l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            6888999885 3344444 6789999999999999 6777677774 9999999999998 6667789999999999999


Q ss_pred             cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128          112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES  191 (312)
Q Consensus       112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  191 (312)
                      |.+.....                       .....+.|+.|++++|+++ .+|.....+..|+++.+++|.+. ..+..
T Consensus       173 N~l~~l~~-----------------------~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~  227 (394)
T COG4886         173 NDLSDLPK-----------------------LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS  227 (394)
T ss_pred             chhhhhhh-----------------------hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence            99875432                       1114677999999999999 67766566677999999999654 56777


Q ss_pred             hcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128          192 IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       192 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                      +..+.++..+.+.+|++. ..+..++.++.++.|++++|+++.... ...+.+++.+++++|.+...
T Consensus       228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hhhcccccccccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence            889999999999999998 557778889999999999999996555 77888899999999866543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.5e-13  Score=114.11  Aligned_cols=207  Identities=21%  Similarity=0.240  Sum_probs=149.6

Q ss_pred             CCCCcCEEECCCCccccccc--ccccCCCCCCEEECcCCCCCCCCC-hhHHhcCCCCcEEEccCCcccccCCcC-CCCCC
Q 047128            3 SLTSLVWLRLGKNKLSVDIL--VSLKNCTTLESLDVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTR-LCDLP   78 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~--~~l~~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~   78 (312)
                      ++.+|+.+.|.+..+. ..+  .....+++++.|||+.|-+...-+ ..+.+.+++|+.|+++.|++.....+. -..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            5778999999999886 333  467789999999999998873222 234558999999999999987322221 24678


Q ss_pred             CCcEEEccCCCCCcccch-hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128           79 FLQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR  157 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  157 (312)
                      .|+.|.++.+.++...-. ....+|+|..|++..|......                      ......++.|+.|||++
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~----------------------~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK----------------------ATSTKILQTLQELDLSN  255 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee----------------------cchhhhhhHHhhccccC
Confidence            899999999998744333 4567899999999988521110                      11223466799999999


Q ss_pred             CcccccCC--hhhhcCCCCCEEEccCCCCccc-cChh-----hcCCCCCcEEECCCccCCccCCc--cccCCCCCCeEec
Q 047128          158 NNFSGKIP--LEVTNLKALHSLNFSYNSFTRR-IPES-----IGVMTSLESIDFSTNQLSGEIPE--SMSSLTFSNHLNL  227 (312)
Q Consensus       158 n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l  227 (312)
                      |++-. .+  ...+.++.|+.|+++.+.+... .|+.     ....++|+.|+++.|++. ..+.  .+..+++|+.+.+
T Consensus       256 N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  256 NNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             Ccccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhc
Confidence            99873 33  3567889999999999988732 2332     346789999999999997 4443  3456788888888


Q ss_pred             ccCcccc
Q 047128          228 SNNNLTG  234 (312)
Q Consensus       228 ~~N~l~~  234 (312)
                      ..|.++.
T Consensus       334 ~~n~ln~  340 (505)
T KOG3207|consen  334 TLNYLNK  340 (505)
T ss_pred             ccccccc
Confidence            8888874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=3.4e-12  Score=99.38  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=11.0

Q ss_pred             CCCCCEEEccCCCCcccc-ChhhcCCCCCcEEECCCccCC
Q 047128          171 LKALHSLNFSYNSFTRRI-PESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~  209 (312)
                      +++|++|++++|+|...- -..+..+++|+.|++.+|.++
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            444444444444443110 112334455555555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.29  E-value=1.2e-11  Score=116.20  Aligned_cols=91  Identities=34%  Similarity=0.604  Sum_probs=81.5

Q ss_pred             hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCC-CCCCeE
Q 047128          147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSL-TFSNHL  225 (312)
Q Consensus       147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L  225 (312)
                      +++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|++++|++++.+|..+... .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            4458889999999999999999999999999999999999999999999999999999999999999988653 567889


Q ss_pred             ecccCcccccCC
Q 047128          226 NLSNNNLTGKIP  237 (312)
Q Consensus       226 ~l~~N~l~~~~~  237 (312)
                      ++++|...|..|
T Consensus       521 ~~~~N~~lc~~p  532 (623)
T PLN03150        521 NFTDNAGLCGIP  532 (623)
T ss_pred             EecCCccccCCC
Confidence            999998776544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=1.2e-11  Score=96.32  Aligned_cols=126  Identities=25%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhh-Hhhcc
Q 047128           25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI-NNLTG  103 (312)
Q Consensus        25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~  103 (312)
                      +.+...+++|+|++|.|+ .+. .+...+.+|+.|++++|.++. + +.+..+++|++|++++|+++.. .+.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            345556788888888888 664 344357788888999888883 4 3577888888999998888743 3333 23444


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC-ChhhhcCCCCCEEEccCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALHSLNFSYN  182 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-p~~~~~l~~L~~L~Ls~n  182 (312)
                                                                    |+.|++++|+|.... -..+..+++|+.|++.+|
T Consensus        90 ----------------------------------------------L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   90 ----------------------------------------------LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             ------------------------------------------------EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             ----------------------------------------------CCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence                                                          555666666665321 134556677777777777


Q ss_pred             CCccccCh----hhcCCCCCcEEE
Q 047128          183 SFTRRIPE----SIGVMTSLESID  202 (312)
Q Consensus       183 ~l~~~~p~----~~~~l~~L~~L~  202 (312)
                      .+. ..+.    .+..+|+|+.||
T Consensus       124 Pv~-~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  124 PVC-EKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred             ccc-chhhHHHHHHHHcChhheeC
Confidence            765 2222    245566676665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=1.9e-12  Score=106.13  Aligned_cols=203  Identities=14%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC-CCCCcccchhhHhhcc
Q 047128           25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD-TNLSGAIPNWINNLTG  103 (312)
Q Consensus        25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~  103 (312)
                      +.-+++|+.+.++.+.-. .|-.-.. .-|.|+++..++..++ ..|. +-++..+...-.+. ...+|........+..
T Consensus       210 l~~f~~l~~~~~s~~~~~-~i~~~~~-~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~  285 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTE-NIVDIEL-LKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSALVSADTWQE  285 (490)
T ss_pred             hHHhhhhheeeeeccchh-heeceee-cCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceEEecchHhh
Confidence            334566777777776544 3332221 3467777777666554 2221 11122221111111 1112222223333444


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS  183 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~  183 (312)
                      |+.+++++|.+...-                       ....-.+.++.|+++.|.+. ... .+..+++|++||||+|.
T Consensus       286 LtelDLS~N~I~~iD-----------------------ESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  286 LTELDLSGNLITQID-----------------------ESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNL  340 (490)
T ss_pred             hhhccccccchhhhh-----------------------hhhhhccceeEEecccccee-eeh-hhhhcccceEeecccch
Confidence            445555554443211                       11122345666777777666 222 25566677777777776


Q ss_pred             CccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc--cCCCCCCCCCCccccccCCCCCCCC
Q 047128          184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG--KIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                      ++ .+..+-.++.+.++|.+++|.+. ... .+..+-+|..||+++|+|..  .+..++.++.++.+.+.+|++.+.|
T Consensus       341 Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  341 LA-ECVGWHLKLGNIKTLKLAQNKIE-TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hH-hhhhhHhhhcCEeeeehhhhhHh-hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            65 44444445566667777776665 222 24455566666777776653  2334455666666666666665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=2.8e-12  Score=106.98  Aligned_cols=235  Identities=15%  Similarity=0.169  Sum_probs=157.6

Q ss_pred             CCCCcCEEECCCCccccc----ccccccCCCCCCEEECcCC---CCCCCCChhHH------hcCCCCcEEEccCCccccc
Q 047128            3 SLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGEN---EFVGNIPTWIG------ERFSRMVVLILRSNKFHGP   69 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n---~l~~~lp~~~~------~~l~~L~~L~L~~n~l~~~   69 (312)
                      .+..+++++|++|.+...    +...+...++|+..++++-   +....+|+.+-      .+.+.|+.|+||.|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            466788999999998632    3455677888999988873   22235554321      1567899999999998744


Q ss_pred             CCcC----CCCCCCCcEEEccCCCCCcccchh-------------hHhhcccccccccccccccccCCCCccceeeeeee
Q 047128           70 LPTR----LCDLPFLQILDIADTNLSGAIPNW-------------INNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA  132 (312)
Q Consensus        70 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  132 (312)
                      .+..    +..+..|++|+|.+|.+...-...             ...-+.|+.+....|++...-              
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g--------------  173 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG--------------  173 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------------
Confidence            4333    456788999999999875322212             123345666666666654211              


Q ss_pred             eeeecCcccchHHHhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECC
Q 047128          133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFS  204 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~  204 (312)
                          .....-.++..+.|+.+.+..|.|...    ...++..+++|+.|||..|.++..    +...++.++.|++++++
T Consensus       174 ----a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  174 ----ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ----HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence                111233455567888899988888522    234677889999999999998732    33456678899999999


Q ss_pred             CccCCccCCccc-----cCCCCCCeEecccCccccc-----CCCCCCCCCCccccccCCCC
Q 047128          205 TNQLSGEIPESM-----SSLTFSNHLNLSNNNLTGK-----IPSSTQLQSFDVSSFAGNDL  255 (312)
Q Consensus       205 ~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~-----~~~~~~l~~l~~~~l~~n~l  255 (312)
                      ++.+.......|     ...|+|+++.+.+|.|+..     .......+.+..+++++|++
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            999885544333     3478899999999988741     11113367788888999977

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=6.1e-12  Score=107.81  Aligned_cols=186  Identities=16%  Similarity=0.136  Sum_probs=136.2

Q ss_pred             CCCCcCEEECCCCccccc--ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccccc-CCcCCCCCCC
Q 047128            3 SLTSLVWLRLGKNKLSVD--ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTRLCDLPF   79 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~   79 (312)
                      .|++++.|||+.|-+..-  +......+++|+.|+++.|++.....+.....+.+|+.|.++.|.++.. +......+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            589999999999987632  3345567999999999999987333333333578999999999998832 1223467899


Q ss_pred             CcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128           80 LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN  159 (312)
Q Consensus        80 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  159 (312)
                      |+.|++..|............+..|+.|++.+|++-..-..                     .....++.|+.|+++.+.
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---------------------~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---------------------YKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---------------------cccccccchhhhhccccC
Confidence            99999999964435555677888899999999886532211                     112346779999999999


Q ss_pred             cccc-CChh-----hhcCCCCCEEEccCCCCccccC--hhhcCCCCCcEEECCCccCCc
Q 047128          160 FSGK-IPLE-----VTNLKALHSLNFSYNSFTRRIP--ESIGVMTSLESIDFSTNQLSG  210 (312)
Q Consensus       160 i~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~  210 (312)
                      +.+. .|+.     ...+++|++|+++.|++. ..+  ..+..+++|+.|.+..|.++.
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            8754 2332     356799999999999995 322  345667899999999999883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=5.2e-12  Score=103.58  Aligned_cols=132  Identities=23%  Similarity=0.396  Sum_probs=96.0

Q ss_pred             CCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccc
Q 047128           28 CTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTS  107 (312)
Q Consensus        28 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  107 (312)
                      -+.|+.+|+++|.|+ .+.+.+. -.|.++.|++|.|.++ .+ ..++.+++|+.||+++|.++ .+..+-..+.     
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG-----  352 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLG-----  352 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhc-----
Confidence            356888999999998 8888775 6799999999999998 44 34888999999999999887 3333333333     


Q ss_pred             cccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccc
Q 047128          108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR  187 (312)
Q Consensus       108 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~  187 (312)
                                                               +++.|.+++|.+...  ..+.++.+|..||+++|+|. .
T Consensus       353 -----------------------------------------NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~  388 (490)
T KOG1259|consen  353 -----------------------------------------NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-E  388 (490)
T ss_pred             -----------------------------------------CEeeeehhhhhHhhh--hhhHhhhhheeccccccchh-h
Confidence                                                     366677777777622  24567777888888888875 3


Q ss_pred             cC--hhhcCCCCCcEEECCCccCCccCCc
Q 047128          188 IP--ESIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       188 ~p--~~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                      ..  ..++++|.|+.+.+.+|.+. .+++
T Consensus       389 ldeV~~IG~LPCLE~l~L~~NPl~-~~vd  416 (490)
T KOG1259|consen  389 LDEVNHIGNLPCLETLRLTGNPLA-GSVD  416 (490)
T ss_pred             HHHhcccccccHHHHHhhcCCCcc-ccch
Confidence            22  34677888888888888887 4444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=3e-11  Score=77.69  Aligned_cols=59  Identities=31%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK   65 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~   65 (312)
                      +|++|++++|+++...+..|.++++|++|++++|.++ .++...+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555554444444555555555555555554 4444444445555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=4.3e-11  Score=76.98  Aligned_cols=61  Identities=31%  Similarity=0.482  Sum_probs=54.0

Q ss_pred             CCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCC
Q 047128           29 TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNL   90 (312)
Q Consensus        29 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   90 (312)
                      ++|++|++++|+++ .+|...++++++|++|++++|+++...+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999999 88888777899999999999999977778899999999999999874

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.01  E-value=7.5e-12  Score=113.51  Aligned_cols=112  Identities=27%  Similarity=0.383  Sum_probs=78.7

Q ss_pred             HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCe
Q 047128          145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH  224 (312)
Q Consensus       145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  224 (312)
                      +-++.++.|||++|+++...  .+..+++|++|||+.|.+. .+|..-.--..|+.|.+++|.++ ..-+ +.++.+|+.
T Consensus       184 qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~g-ie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRG-IENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hhhh-HHhhhhhhc
Confidence            34566788888888887433  6778888888888888887 56542222234888888888887 3332 667888888


Q ss_pred             EecccCcccccC--CCCCCCCCCccccccCCCCCCCCCC
Q 047128          225 LNLSNNNLTGKI--PSSTQLQSFDVSSFAGNDLCGAPIP  261 (312)
Q Consensus       225 L~l~~N~l~~~~--~~~~~l~~l~~~~l~~n~l~~~p~~  261 (312)
                      ||+++|-+.+.-  ...+.+..|..+++.||++|..|+.
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h  297 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH  297 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence            888888776532  2224566677888888888877754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.00  E-value=1.5e-10  Score=104.09  Aligned_cols=106  Identities=22%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++|+.+++.+|.|.. +...+..+++|++|++++|.|+ .+..--  .++.|+.|++++|.+.. + ..+..++.|+.
T Consensus        93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKELNLSGNLISD-I-SGLESLKSLKL  166 (414)
T ss_pred             cccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh--hccchhhheeccCcchh-c-cCCccchhhhc
Confidence            45666666666666652 2222555666666777777666 443321  35556666777776662 2 33455666666


Q ss_pred             EEccCCCCCcccc-hhhHhhcccccccccccccc
Q 047128           83 LDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQ  115 (312)
Q Consensus        83 L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~  115 (312)
                      +++++|++...-+ . ...+..++.+.+..|.+.
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            7777766653333 1 355566666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.97  E-value=7.3e-11  Score=106.10  Aligned_cols=197  Identities=23%  Similarity=0.271  Sum_probs=118.7

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +..++.+++..|.|.. .-..+..+++|+.+++.+|.+. .+...+. .+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchh-hhhcchheeccccccccc--cchhhccchhhh
Confidence            4455666667777652 2334666777778888888777 5554333 577888888888887743  235666667788


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.++..  ..+..++.|+.+++.+|.+......                     . ...+..++.+.+.+|.+...
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND---------------------E-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhh---------------------h-hhhccchHHHhccCCchhcc
Confidence            8888877632  2344466666666666665543221                     0 12344566677777766622


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCC--CcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTS--LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      .  .+..+..+..+++..|.++ .+-. +..++.  |+.+++++|.+. ..+..+.....+..+++.+|++..
T Consensus       202 ~--~~~~~~~l~~~~l~~n~i~-~~~~-l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  202 E--GLDLLKKLVLLSLLDNKIS-KLEG-LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             c--chHHHHHHHHhhcccccce-eccC-cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence            2  2334445555566667665 2211 222333  778888888877 444455666777778888877763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.92  E-value=3.5e-10  Score=94.61  Aligned_cols=213  Identities=15%  Similarity=0.189  Sum_probs=147.8

Q ss_pred             CCCCcCEEECCCCc---cccccc-------ccccCCCCCCEEECcCCCCCCCCChhHH---hcCCCCcEEEccCCccccc
Q 047128            3 SLTSLVWLRLGKNK---LSVDIL-------VSLKNCTTLESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHGP   69 (312)
Q Consensus         3 ~l~~L~~L~L~~n~---i~~~~~-------~~l~~l~~L~~L~l~~n~l~~~lp~~~~---~~l~~L~~L~L~~n~l~~~   69 (312)
                      +.+.|+..++++--   ....+|       .++.++++|+++|||+|.+....+..+.   +.+..|++|.|.+|.+...
T Consensus        56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen   56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE  135 (382)
T ss_pred             hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence            45567777776542   222333       3556788999999999998755554432   3678999999999987622


Q ss_pred             C-------------CcCCCCCCCCcEEEccCCCCCcc----cchhhHhhcccccccccccccccccCCCCccceeeeeee
Q 047128           70 L-------------PTRLCDLPFLQILDIADTNLSGA----IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA  132 (312)
Q Consensus        70 ~-------------~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  132 (312)
                      .             ....+.-+.|+++..++|++...    ....|...+.|+.+.+..|.+...-              
T Consensus       136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG--------------  201 (382)
T KOG1909|consen  136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--------------  201 (382)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch--------------
Confidence            1             12235567899999999998632    3346777788888877777654210              


Q ss_pred             eeeecCcccchHHHhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccccCh----hh-cCCCCCcEEEC
Q 047128          133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRIPE----SI-GVMTSLESIDF  203 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~----~~-~~l~~L~~L~l  203 (312)
                          .......+..+++|+.||+.+|-++..    +.+.+..+++|+.|+++.|.+...-..    .+ ...|+|+.+.+
T Consensus       202 ----~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l  277 (382)
T KOG1909|consen  202 ----VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL  277 (382)
T ss_pred             ----hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence                001223445678999999999998733    345667789999999999998743322    22 34689999999


Q ss_pred             CCccCCcc----CCccccCCCCCCeEecccCccc
Q 047128          204 STNQLSGE----IPESMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       204 ~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  233 (312)
                      .+|.++..    +-..+...+.|..|++++|.+.
T Consensus       278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             CcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            99999843    2223456889999999999993

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.3e-09  Score=105.15  Aligned_cols=107  Identities=22%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             CCCcCEEECCCCc--ccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            4 LTSLVWLRLGKNK--LSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         4 l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      +++|++|-+..|.  +.......|..++.|++||+++|.-.+.+|..++ ++-+|++|+++++.+. .+|..+..+..|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            4566777777765  4323333466677777777777655557777776 6777777777777777 6777777777777


Q ss_pred             EEEccCCCCCcccchhhHhhccccccccccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTR  112 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n  112 (312)
                      +|++.++.-....|.....+.+|+.+.+..-
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeecc
Confidence            7777766544344555566777777665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.70  E-value=1.7e-09  Score=78.88  Aligned_cols=98  Identities=24%  Similarity=0.331  Sum_probs=71.1

Q ss_pred             cCEEECCCCccccccccc---ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            7 LVWLRLGKNKLSVDILVS---LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +..++|+.|++. .+++.   +....+|+..++++|.+. .+|..+....+.++.+++++|.+. .+|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            456778888775 34433   445566777888888888 888887766778888888888888 677778888888888


Q ss_pred             EccCCCCCcccchhhHhhccccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSC  108 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~  108 (312)
                      ++++|.+. ..|..+..+.++..|+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhc
Confidence            88888887 5666665566544433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=4.3e-08  Score=94.82  Aligned_cols=200  Identities=23%  Similarity=0.261  Sum_probs=132.2

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCC--CCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE--FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~--l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      ..+...+.+|.+. ..+... ..+.|+.|-+.+|.  +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4566677777764 344333 34579999999996  66 8888888889999999999988777899999999999999


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc--
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS--  161 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~--  161 (312)
                      ++++..+. .+|..+.++..|.+|++..+......                      +.....+++|++|.+......  
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~----------------------~~i~~~L~~Lr~L~l~~s~~~~~  657 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI----------------------PGILLELQSLRVLRLPRSALSND  657 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccc----------------------cchhhhcccccEEEeeccccccc
Confidence            99999998 89999999999999988776533211                      334455788898888765422  


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCc----EEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      ...-..+.++.+|+.+.......  .+-..+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus       658 ~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  658 KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            11222334444555444432222  0111122222222    3333333333 344556778889999998887764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=9.1e-09  Score=84.65  Aligned_cols=204  Identities=18%  Similarity=0.126  Sum_probs=116.4

Q ss_pred             CCCCCCEEECcCCCCCC--CCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhcc
Q 047128           27 NCTTLESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTG  103 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~  103 (312)
                      ..+.++.+||.+|.|++  ++. .+.+.+|.|++|+++.|++...+...-.+..+|++|.+.+..+....- ..+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            35677778888887773  122 233477888888888887764332221456678888777776653322 34456667


Q ss_pred             cccccccccccccccCCCCcc-cee-eeeeeee-----eecCcccchHHHhccccEEEcCCCcccccC-ChhhhcCCCCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDV-GVI-LVEKASV-----VSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALH  175 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~-~~~-~~~~~~~-----~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-p~~~~~l~~L~  175 (312)
                      ++.+.++.|++-+..-..-.. ... -...+..     ............++++..+.+..+.+.... .+.+..++.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            777777666543221111000 000 0000000     001112223345677888888888775433 34556677777


Q ss_pred             EEEccCCCCccc-cChhhcCCCCCcEEECCCccCCccCCc------cccCCCCCCeEecccCccc
Q 047128          176 SLNFSYNSFTRR-IPESIGVMTSLESIDFSTNQLSGEIPE------SMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       176 ~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~------~~~~l~~L~~L~l~~N~l~  233 (312)
                      -|+|+.|+|... .-+.+..++.|..|.+++|.+.+....      .++.+++++.|+=+  +|+
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs  290 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS  290 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence            888888888632 224567788899999999988744322      24566777776543  554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=3.9e-10  Score=102.68  Aligned_cols=182  Identities=21%  Similarity=0.179  Sum_probs=123.3

Q ss_pred             cccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccc----------ccCCcCCCCCCCCcEEEccCCCCC
Q 047128           22 LVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH----------GPLPTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        22 ~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      |-.+..++.|++|.+.++.+. . ..++-.--.+|++|.- .|.++          +.+..++ ....|.+.+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            556677889999999999887 3 2222111134555432 22222          1111111 2346788888889887


Q ss_pred             cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcC
Q 047128           92 GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL  171 (312)
Q Consensus        92 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l  171 (312)
                       ....++.-++.++.|++.+|.+..                        .+....++.|++|||+.|.++ ..|..-..-
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~------------------------v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g  231 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTK------------------------VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVG  231 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhh------------------------hHHHHhcccccccccccchhc-cccccchhh
Confidence             667788888899999999888764                        224456788999999999998 455422222


Q ss_pred             CCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCccccc
Q 047128          172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                      ..|+.|++++|.++ .+-+ +.++.+|+.||+++|-|++-- -.-+..+..|+.|+|.+|++-+.
T Consensus       232 c~L~~L~lrnN~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  232 CKLQLLNLRNNALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhheeeeecccHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            34999999999987 4433 568899999999999887321 12245677889999999998753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.51  E-value=9.6e-08  Score=77.77  Aligned_cols=235  Identities=14%  Similarity=0.118  Sum_probs=151.5

Q ss_pred             CCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCC---CCCCChh-------HHhcCCCCcEEEccCCccccc
Q 047128            4 LTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEF---VGNIPTW-------IGERFSRMVVLILRSNKFHGP   69 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l---~~~lp~~-------~~~~l~~L~~L~L~~n~l~~~   69 (312)
                      +..++.++||+|.|...    +...+++-.+|+..++++-..   .+.+++.       +. +++.|+..+||.|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccccCcc
Confidence            56788999999999643    334566778899998887432   2233432       22 689999999999999866


Q ss_pred             CCcC----CCCCCCCcEEEccCCCCCcccch----h---------hHhhcccccccccccccccccCCCCccceeeeeee
Q 047128           70 LPTR----LCDLPFLQILDIADTNLSGAIPN----W---------INNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA  132 (312)
Q Consensus        70 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~---------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  132 (312)
                      .|..    ++....|.+|.+++|.+...-..    +         ..+-|.|++..+..|++..-..             
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~-------------  174 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK-------------  174 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH-------------
Confidence            6543    56778999999999987532211    1         2344567777777776652100             


Q ss_pred             eeeecCcccchHHHhccccEEEcCCCcccccCC-----hhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEEC
Q 047128          133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-----LEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDF  203 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-----~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l  203 (312)
                           ....-.+..-..|+.+.+..|.|.-.--     .....+.+|+.||+..|.++..    ....+..++.|++|.+
T Consensus       175 -----~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         175 -----ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             -----HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence                 0011122233568888888888763211     1234678999999999998732    2334567788999999


Q ss_pred             CCccCCccCCccc------cCCCCCCeEecccCcccccCCCC--------CCCCCCccccccCCCCCC
Q 047128          204 STNQLSGEIPESM------SSLTFSNHLNLSNNNLTGKIPSS--------TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       204 ~~N~l~~~~p~~~------~~l~~L~~L~l~~N~l~~~~~~~--------~~l~~l~~~~l~~n~l~~  257 (312)
                      .+|-++......+      ...|+|..|...+|.+.+..-..        ..++-|..+...||++..
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            9998885544332      13578888999999877532211        233444555567776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.6e-09  Score=85.86  Aligned_cols=176  Identities=19%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             cCEEECCCCccccc-ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-cccc-CCcCCCCCCCCcEE
Q 047128            7 LVWLRLGKNKLSVD-ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGP-LPTRLCDLPFLQIL   83 (312)
Q Consensus         7 L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L   83 (312)
                      |+.|||+...|+.. .-..++.+++|+.|.+.++++.+.+...+. .-.+|+.|+++++. ++.. ...-+..++.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            55566665555421 222344555566666666666555555554 44556666665533 2210 00113445555566


Q ss_pred             EccCCCCCcccch-hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc-
Q 047128           84 DIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS-  161 (312)
Q Consensus        84 ~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~-  161 (312)
                      +++++.+....-. ....                                             .-++|+.|++++..-. 
T Consensus       266 NlsWc~l~~~~Vtv~V~h---------------------------------------------ise~l~~LNlsG~rrnl  300 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAH---------------------------------------------ISETLTQLNLSGYRRNL  300 (419)
T ss_pred             CchHhhccchhhhHHHhh---------------------------------------------hchhhhhhhhhhhHhhh
Confidence            6665554322110 0000                                             0123555666554321 


Q ss_pred             --ccCChhhhcCCCCCEEEccCCC-CccccChhhcCCCCCcEEECCCccCCccCCcc---ccCCCCCCeEecccC
Q 047128          162 --GKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVMTSLESIDFSTNQLSGEIPES---MSSLTFSNHLNLSNN  230 (312)
Q Consensus       162 --~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N  230 (312)
                        ..+..-...+++|.+|||+.|. ++...-..|.+++.|++|.++.+-.-  +|..   +...|.|.+||+.+.
T Consensus       301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence              0111122456777777777663 44333334556677777777766432  4442   356677777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=2.8e-08  Score=72.58  Aligned_cols=81  Identities=25%  Similarity=0.442  Sum_probs=42.2

Q ss_pred             ccEEEcCCCcccccCChhh-hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          150 VRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      |+.+++++|.+. .+|+.| .+.+..+.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            444555555555 233333 23345555555555555 55555555555555555555555 444444445555555555


Q ss_pred             cCccc
Q 047128          229 NNNLT  233 (312)
Q Consensus       229 ~N~l~  233 (312)
                      +|.+.
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=4.2e-07  Score=53.64  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCC
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV   42 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~   42 (312)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666666666665 34444666666666666666665

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=1e-06  Score=51.96  Aligned_cols=35  Identities=31%  Similarity=0.601  Sum_probs=13.7

Q ss_pred             CCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128          174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       174 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  209 (312)
                      |++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444443 33333344444444444444443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=2e-07  Score=76.88  Aligned_cols=189  Identities=15%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             CCCCEEECcCCCCCCCCCh-hHHhcCCCCcEEEccCCcccc--cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccc
Q 047128           29 TTLESLDVGENEFVGNIPT-WIGERFSRMVVLILRSNKFHG--PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMV  105 (312)
Q Consensus        29 ~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  105 (312)
                      .-++.+.+-++.|...-.. .+......++.+||.+|.+..  .+...+..+|.|++|+++.|++...+...-..+.+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3444566666666522222 244467899999999999983  2233457899999999999998754332224566788


Q ss_pred             cccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc----------cccCChh--------
Q 047128          106 TSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF----------SGKIPLE--------  167 (312)
Q Consensus       106 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i----------~~~~p~~--------  167 (312)
                      ++.+.+..+.+...                     ......++.++.|.++.|.+          ....|..        
T Consensus       125 ~lVLNgT~L~w~~~---------------------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c  183 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQS---------------------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC  183 (418)
T ss_pred             EEEEcCCCCChhhh---------------------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc
Confidence            88777766653221                     12223344455555555532          2111110        


Q ss_pred             -----------hhcCCCCCEEEccCCCCccccC-hhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCcccc
Q 047128          168 -----------VTNLKALHSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       168 -----------~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                                 ..-.+++..+-+..|.+...-. ..+..+|.+.-|+|+.|+|.+-- -+.+..++.|+-|.+++|++..
T Consensus       184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence                       0123555555555555432111 12345566778888888887321 1356678888888888888876


Q ss_pred             cCCC
Q 047128          235 KIPS  238 (312)
Q Consensus       235 ~~~~  238 (312)
                      +...
T Consensus       264 ~l~~  267 (418)
T KOG2982|consen  264 PLRG  267 (418)
T ss_pred             cccC
Confidence            5543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.1e-07  Score=78.47  Aligned_cols=161  Identities=17%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCC-CCCCCCChhHHhcCCCCcEEEccCCcccccCCcC-CC-CCC
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGEN-EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR-LC-DLP   78 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~   78 (312)
                      +.|.+|+.|.|.++++.+.+...++.-..|+.++++.+ .++..--..+++.+..|..|++++|.+....-.. +. --+
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            45788999999999998877788899999999999986 5662223446668999999999999877432111 11 125


Q ss_pred             CCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128           79 FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  158 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  158 (312)
                      +|+.|++++..=. .....+.                                          ......++|..||++++
T Consensus       287 ~l~~LNlsG~rrn-l~~sh~~------------------------------------------tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  287 TLTQLNLSGYRRN-LQKSHLS------------------------------------------TLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hhhhhhhhhhHhh-hhhhHHH------------------------------------------HHHHhCCceeeeccccc
Confidence            7888888875321 0000111                                          12234667888999876


Q ss_pred             cc-cccCChhhhcCCCCCEEEccCCCCccccChh---hcCCCCCcEEECCCcc
Q 047128          159 NF-SGKIPLEVTNLKALHSLNFSYNSFTRRIPES---IGVMTSLESIDFSTNQ  207 (312)
Q Consensus       159 ~i-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~l~~N~  207 (312)
                      .. +...-..|.+++.|++|.++.|..  .+|..   +...|+|.+|+.-+.-
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            54 433334667889999999999984  56654   3567899999987653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1.1e-05  Score=70.95  Aligned_cols=55  Identities=11%  Similarity=0.184  Sum_probs=28.2

Q ss_pred             CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128           27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT   88 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n   88 (312)
                      .+.++++|++++|.++ .+| .+   ..+|++|+++++.-...+|..+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3455666666666655 555 11   2346666665533222444433  135666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=7.6e-06  Score=64.02  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=38.9

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccch
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPN   96 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   96 (312)
                      =+.+++.+.++. .+.. ++....+...+|+++|.+. .+ ..|..++.|.+|.+++|+|+.+.|.
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~   82 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPD   82 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccc
Confidence            355666666654 2222 3334567777788888776 33 3467777777888877777755553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=5.5e-06  Score=64.78  Aligned_cols=103  Identities=19%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc--CCCCCCCCcEE
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT--RLCDLPFLQIL   83 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L   83 (312)
                      ....+||++|.+..  ...|..++.|..|.+.+|+|+ .|...+..-+++|+.|.+.+|.+. .+.+  .+..+|.|++|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            45668888888752  235677888888899999988 888887767788899999988887 3222  25677888888


Q ss_pred             EccCCCCCccc---chhhHhhccccccccccc
Q 047128           84 DIADTNLSGAI---PNWINNLTGMVTSCSFTR  112 (312)
Q Consensus        84 ~l~~n~l~~~~---~~~~~~l~~L~~l~l~~n  112 (312)
                      .+-+|+++..-   -..+..+++|+.|++..-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            88888775321   124566777777776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=8.5e-06  Score=77.23  Aligned_cols=83  Identities=23%  Similarity=0.367  Sum_probs=46.2

Q ss_pred             CCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccc-cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           29 TTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        29 ~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      .+|++|++++...- ..-|..++.-+|+|+.|.+++=.+.. ..-....+.|+|..||+|+.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666677665432 12233455556777777776655431 1112345667777777777766633  45666666666


Q ss_pred             ccccccc
Q 047128          107 SCSFTRS  113 (312)
Q Consensus       107 l~l~~n~  113 (312)
                      |.+.+-.
T Consensus       200 L~mrnLe  206 (699)
T KOG3665|consen  200 LSMRNLE  206 (699)
T ss_pred             HhccCCC
Confidence            6554433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.87  E-value=5.7e-05  Score=56.19  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=25.8

Q ss_pred             ccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128           23 VSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      ..|.++++|+.+.+.. .+. .++...|..+.+|+.+.+..+ +.......|..+++++.+.+..
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            3455555555555553 344 455555545555565555553 4433334455555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=0.00015  Score=63.89  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccc-cccccCCCCccceeeee
Q 047128           52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRS-VQQYLPLPIDVGVILVE  130 (312)
Q Consensus        52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~  130 (312)
                      .+.+++.|++++|.++ .+|. +  .++|+.|.++++.--..+|+.+  ..+|+.|.+.+|. +.. +            
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L------------  110 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L------------  110 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c------------
Confidence            4789999999999988 6662 2  3469999998743323666544  2578888888763 321 1            


Q ss_pred             eeeeeecCcccchHHHhccccEEEcCCCcccc--cCChhhhcCCCCCEEEccCCC-Cc-cccChhhcCCCCCcEEECCCc
Q 047128          131 KASVVSKGEMVDYEDILNLVRMIDISRNNFSG--KIPLEVTNLKALHSLNFSYNS-FT-RRIPESIGVMTSLESIDFSTN  206 (312)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~-l~-~~~p~~~~~l~~L~~L~l~~N  206 (312)
                                      +.+|+.|++..+....  .+|      ++|+.|.+.+++ .. ...|..  -.++|++|++++|
T Consensus       111 ----------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c  166 (426)
T PRK15386        111 ----------------PESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC  166 (426)
T ss_pred             ----------------ccccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCC
Confidence                            2346667776555431  222      345566654322 11 011211  1256777777777


Q ss_pred             cCCccCCccccCCCCCCeEecccC
Q 047128          207 QLSGEIPESMSSLTFSNHLNLSNN  230 (312)
Q Consensus       207 ~l~~~~p~~~~~l~~L~~L~l~~N  230 (312)
                      ... ..|+.+  ..+|+.|+++.+
T Consensus       167 ~~i-~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        167 SNI-ILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             Ccc-cCcccc--cccCcEEEeccc
Confidence            655 344332  246777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.79  E-value=1.9e-05  Score=64.64  Aligned_cols=191  Identities=15%  Similarity=0.199  Sum_probs=120.0

Q ss_pred             ccccCCCCCCEEECcCCCCCCCCChhHH---hcCCCCcEEEccCCcccccCCc-------------CCCCCCCCcEEEcc
Q 047128           23 VSLKNCTTLESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHGPLPT-------------RLCDLPFLQILDIA   86 (312)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~l~~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~   86 (312)
                      .++.+|++|+..+||+|.+....|..+.   +.-..|++|.+++|.+......             -...-|.|++.+..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            3456788888888888888766665433   2457788888888877522211             12355788888888


Q ss_pred             CCCCCcccch-----hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcc---cchHHHhccccEEEcCCC
Q 047128           87 DTNLSGAIPN-----WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM---VDYEDILNLVRMIDISRN  158 (312)
Q Consensus        87 ~n~l~~~~~~-----~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n  158 (312)
                      .|++.. .+.     .+..-..|+.+.+..|.+..                    .|..   ..-....++|+.||+.+|
T Consensus       166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrp--------------------egv~~L~~~gl~y~~~LevLDlqDN  224 (388)
T COG5238         166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRP--------------------EGVTMLAFLGLFYSHSLEVLDLQDN  224 (388)
T ss_pred             cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCc--------------------chhHHHHHHHHHHhCcceeeecccc
Confidence            888752 221     23333455555555554431                    0000   011134678999999999


Q ss_pred             ccccc----CChhhhcCCCCCEEEccCCCCccccChh----h--cCCCCCcEEECCCccCCccC-Cc-----cc-cCCCC
Q 047128          159 NFSGK----IPLEVTNLKALHSLNFSYNSFTRRIPES----I--GVMTSLESIDFSTNQLSGEI-PE-----SM-SSLTF  221 (312)
Q Consensus       159 ~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~----~--~~l~~L~~L~l~~N~l~~~~-p~-----~~-~~l~~  221 (312)
                      -++-.    ...++...+.|+.|.+..|.++..-...    |  ...|+|..|...+|.+.+.+ ..     .. ..+|.
T Consensus       225 tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~  304 (388)
T COG5238         225 TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPL  304 (388)
T ss_pred             chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHH
Confidence            98732    3345566778999999999887432222    2  24589999999999776432 22     11 34677


Q ss_pred             CCeEecccCcccc
Q 047128          222 SNHLNLSNNNLTG  234 (312)
Q Consensus       222 L~~L~l~~N~l~~  234 (312)
                      |..+-+.+|+|..
T Consensus       305 L~~le~ngNr~~E  317 (388)
T COG5238         305 LVDLERNGNRIKE  317 (388)
T ss_pred             HHHHHHccCcchh
Confidence            7788888898874

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.72  E-value=0.00011  Score=54.59  Aligned_cols=81  Identities=14%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      .++++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccc
Confidence            3444555555443 233333344555555555555443 33 44444444444555555543 22212233344445555


Q ss_pred             EEEcc
Q 047128           82 ILDIA   86 (312)
Q Consensus        82 ~L~l~   86 (312)
                      .+++.
T Consensus        85 ~i~~~   89 (129)
T PF13306_consen   85 NIDIP   89 (129)
T ss_dssp             EEEET
T ss_pred             ccccC
Confidence            55443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=2.7e-05  Score=73.93  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             HHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc-ccChhhcCCCCCcEEECCCccCCccC--Cc----cc
Q 047128          144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSGEI--PE----SM  216 (312)
Q Consensus       144 ~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~--p~----~~  216 (312)
                      ...+++|..||+|+.+++..  .+++++++|+.|.+.+=.+.. ..-..+..+++|+.||+|........  ..    .-
T Consensus       169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~  246 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG  246 (699)
T ss_pred             hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence            34577899999999999844  678899999999887766652 11124568899999999987554221  11    11


Q ss_pred             cCCCCCCeEecccCcccc
Q 047128          217 SSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       217 ~~l~~L~~L~l~~N~l~~  234 (312)
                      ..+|+|+.||.|++.+..
T Consensus       247 ~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  247 MVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccCccccEEecCCcchhH
Confidence            358899999999887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.00027  Score=57.68  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCC--CCCCCCChhHHhcCCCCcEEEccCCcccccCCcC---CCCCC
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGEN--EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR---LCDLP   78 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n--~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~   78 (312)
                      +..|+.+++.+..++.  -..|-.+++|++|.++.|  ++.+.++.-+- .+++|+++++++|+++.  ++.   +..+.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl~pl~~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTLRPLKELE  116 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--ccccchhhhhc
Confidence            3445555555555542  123445667777777777  55544444443 45777777777777762  233   34445


Q ss_pred             CCcEEEccCCCCCccc---chhhHhhccccccc
Q 047128           79 FLQILDIADTNLSGAI---PNWINNLTGMVTSC  108 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~---~~~~~~l~~L~~l~  108 (312)
                      +|..|++.+|..+..-   -..|.-+++|+.++
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            5666777776554321   12445555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00037  Score=56.93  Aligned_cols=89  Identities=18%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCC--cccccCCcCCCCCCCCcEEEccCCCCCc-ccchhhHhh
Q 047128           25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN--KFHGPLPTRLCDLPFLQILDIADTNLSG-AIPNWINNL  101 (312)
Q Consensus        25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l  101 (312)
                      ......|+.+.+.+..++ .+-.. . .+++|+.|.++.|  ++.+.++-..-.+|+|++++++.|++.. ..-.....+
T Consensus        39 ~d~~~~le~ls~~n~glt-t~~~~-P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TLTNF-P-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhcccee-ecccC-C-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            344566777777777776 33322 2 6899999999999  6655555555566999999999999873 111245667


Q ss_pred             ccccccccccccccc
Q 047128          102 TGMVTSCSFTRSVQQ  116 (312)
Q Consensus       102 ~~L~~l~l~~n~~~~  116 (312)
                      .+|..|++..|..++
T Consensus       116 ~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCccc
Confidence            778888888877654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=8.7e-05  Score=61.11  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCC--ccccCCCCCCe
Q 047128          147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP--ESMSSLTFSNH  224 (312)
Q Consensus       147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~  224 (312)
                      +.+.+.|+..++.++++  ....+++.|+.|.||-|+|+..-|  +..+++|++|+|..|.|. .+.  .++.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            44566677777777632  134567777777777777763322  456677777777777776 332  24556777777


Q ss_pred             EecccCccc
Q 047128          225 LNLSNNNLT  233 (312)
Q Consensus       225 L~l~~N~l~  233 (312)
                      |.+..|+=.
T Consensus        93 LWL~ENPCc  101 (388)
T KOG2123|consen   93 LWLDENPCC  101 (388)
T ss_pred             HhhccCCcc
Confidence            777777543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.00015  Score=59.81  Aligned_cols=80  Identities=19%  Similarity=0.154  Sum_probs=45.0

Q ss_pred             CCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhccccc
Q 047128           28 CTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVT  106 (312)
Q Consensus        28 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  106 (312)
                      +.+.+.|+..++.+. .|  .+.+.|+.|+.|.|+-|.|+..  ..+..+.+|+.|+|..|.|..... .-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            344556666666666 33  2334667777777777776633  235566667777777766652211 13455555555


Q ss_pred             cccccc
Q 047128          107 SCSFTR  112 (312)
Q Consensus       107 l~l~~n  112 (312)
                      |.+..|
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.16  E-value=0.003  Score=30.94  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=10.3

Q ss_pred             cCEEECCCCccccccccccc
Q 047128            7 LVWLRLGKNKLSVDILVSLK   26 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~   26 (312)
                      |++|+|++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666665 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.10  E-value=0.0028  Score=31.04  Aligned_cols=18  Identities=50%  Similarity=0.779  Sum_probs=9.1

Q ss_pred             CcEEECCCccCCccCCccc
Q 047128          198 LESIDFSTNQLSGEIPESM  216 (312)
Q Consensus       198 L~~L~l~~N~l~~~~p~~~  216 (312)
                      |++||+++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.55  E-value=0.015  Score=29.66  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=15.1

Q ss_pred             CCCCCEEECcCCCCCCCCChhHH
Q 047128           28 CTTLESLDVGENEFVGNIPTWIG   50 (312)
Q Consensus        28 l~~L~~L~l~~n~l~~~lp~~~~   50 (312)
                      +++|++|++++|++. .+|.+.|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 7776665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.55  E-value=0.015  Score=29.66  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=15.1

Q ss_pred             CCCCCEEECcCCCCCCCCChhHH
Q 047128           28 CTTLESLDVGENEFVGNIPTWIG   50 (312)
Q Consensus        28 l~~L~~L~l~~n~l~~~lp~~~~   50 (312)
                      +++|++|++++|++. .+|.+.|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 7776665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.34  E-value=0.00044  Score=55.61  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+...+.||++.|++. ..-..|+-++.+.+|+++.|++. .+|.++. ....+..+++..|... ..|.++...+.+++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            3455566777777664 34445555666777777777777 7777776 5677777777777766 66777777777777


Q ss_pred             EEccCCCCC
Q 047128           83 LDIADTNLS   91 (312)
Q Consensus        83 L~l~~n~l~   91 (312)
                      +++-.|.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.18  E-value=0.012  Score=26.79  Aligned_cols=9  Identities=33%  Similarity=0.663  Sum_probs=2.9

Q ss_pred             CEEECcCCC
Q 047128           32 ESLDVGENE   40 (312)
Q Consensus        32 ~~L~l~~n~   40 (312)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.85  E-value=0.00022  Score=64.88  Aligned_cols=86  Identities=21%  Similarity=0.284  Sum_probs=39.5

Q ss_pred             ccccEEEcCCCcccccCCh----hhhcCCC-CCEEEccCCCCccc----cChhhcCC-CCCcEEECCCccCCccCCc---
Q 047128          148 NLVRMIDISRNNFSGKIPL----EVTNLKA-LHSLNFSYNSFTRR----IPESIGVM-TSLESIDFSTNQLSGEIPE---  214 (312)
Q Consensus       148 ~~L~~L~ls~n~i~~~~p~----~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~p~---  214 (312)
                      .++++|.++++.++...-.    .+...+. +..+++..|++.+.    ....+..+ +.++.++++.|.++.....   
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            3455555555555422111    1222333 44456666655422    11123333 4556666666666533222   


Q ss_pred             -cccCCCCCCeEecccCccc
Q 047128          215 -SMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       215 -~~~~l~~L~~L~l~~N~l~  233 (312)
                       .+..++.++++.+++|++.
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhhhHHHHHhhcccCccc
Confidence             2334455566666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.54  E-value=0.00098  Score=53.68  Aligned_cols=85  Identities=16%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128          146 ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL  225 (312)
Q Consensus       146 ~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  225 (312)
                      .....+.||++.|++- .....|+.++.+..++++.|.+. ..|..+++...+..+++-+|+.+ ..|.++...++++.+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3456788999999887 56667888899999999999997 88888888888889999899988 788889999999999


Q ss_pred             ecccCccc
Q 047128          226 NLSNNNLT  233 (312)
Q Consensus       226 ~l~~N~l~  233 (312)
                      ++-.|++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.78  E-value=0.00083  Score=61.24  Aligned_cols=186  Identities=22%  Similarity=0.218  Sum_probs=109.1

Q ss_pred             cCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCCCCChhHHhcC----CCCcEEEccCCccccc----CCcCC
Q 047128            7 LVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGNIPTWIGERF----SRMVVLILRSNKFHGP----LPTRL   74 (312)
Q Consensus         7 L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l----~~L~~L~L~~n~l~~~----~~~~~   74 (312)
                      +..++|.+|.+...    +...+..+.+|+.|++++|.+.+.--..+...+    ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56677888877532    335566778888888888888732222222222    3456677777777632    23344


Q ss_pred             CCCCCCcEEEccCCCCCc----ccchhhH----hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128           75 CDLPFLQILDIADTNLSG----AIPNWIN----NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI  146 (312)
Q Consensus        75 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      .....++.++++.|.+..    .++..+.    ...+++++.+.+|.++.....                  ........
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~------------------~l~~~l~~  230 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA------------------LLDEVLAS  230 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH------------------HHHHHHhc
Confidence            556778888888887631    1222333    356677777777665521100                  00111112


Q ss_pred             hcc-ccEEEcCCCccccc----CChhhhcC-CCCCEEEccCCCCcccc----ChhhcCCCCCcEEECCCccCCc
Q 047128          147 LNL-VRMIDISRNNFSGK----IPLEVTNL-KALHSLNFSYNSFTRRI----PESIGVMTSLESIDFSTNQLSG  210 (312)
Q Consensus       147 ~~~-L~~L~ls~n~i~~~----~p~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~~  210 (312)
                      .+. +..+++..|.+.+.    ..+.+..+ ..+++++++.|.|+..-    ...+..++.++++.+++|.+..
T Consensus       231 ~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  231 GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            222 55578888877643    22334445 67788888888887433    3344566788888888888774

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.52  E-value=0.065  Score=27.23  Aligned_cols=23  Identities=30%  Similarity=0.212  Sum_probs=18.0

Q ss_pred             CCCcCEEECCCCccccccccccc
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLK   26 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~   26 (312)
                      +++|++|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            57899999999999855555453

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.52  E-value=0.065  Score=27.23  Aligned_cols=23  Identities=30%  Similarity=0.212  Sum_probs=18.0

Q ss_pred             CCCcCEEECCCCccccccccccc
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLK   26 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~   26 (312)
                      +++|++|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            57899999999999855555453

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.91  E-value=0.012  Score=54.05  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=57.0

Q ss_pred             CCCCCCEEECcCCCCCCCCC-hhHHhcCCCCcEEEccCC-cccccCC----cCCCCCCCCcEEEccCCC-CCcccchhhH
Q 047128           27 NCTTLESLDVGENEFVGNIP-TWIGERFSRMVVLILRSN-KFHGPLP----TRLCDLPFLQILDIADTN-LSGAIPNWIN   99 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~   99 (312)
                      .++.|+.+.+.++.-..... ..+....++|+.|+++++ ......+    .....+++|+.+++++.. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35677777777663321211 122235677777777762 1111111    123445677777777765 4433222222


Q ss_pred             h-hcccccccccccc-cccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128          100 N-LTGMVTSCSFTRS-VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus       100 ~-l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      . .+.|+.+.+..+. ++                     ...+......++.|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt---------------------~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLT---------------------DEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccc---------------------hhHHHHHHHhcCcccEEeeecCcc
Confidence            2 4566665544333 11                     122333445566677777776654

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.08  E-value=0.24  Score=28.01  Aligned_cols=26  Identities=12%  Similarity=-0.100  Sum_probs=17.8

Q ss_pred             ccceEEEeehhhHHHHHHHhhhheee
Q 047128          283 VDHWLYVSATLGFVVGFWCFMRPLLV  308 (312)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (312)
                      ....+..++++.++++.+++++++++
T Consensus         9 ~~vaIa~~VvVPV~vI~~vl~~~l~~   34 (40)
T PF08693_consen    9 NTVAIAVGVVVPVGVIIIVLGAFLFF   34 (40)
T ss_pred             ceEEEEEEEEechHHHHHHHHHHhhe
Confidence            34457777777777777777666664

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.18  E-value=0.062  Score=26.73  Aligned_cols=16  Identities=25%  Similarity=0.374  Sum_probs=8.3

Q ss_pred             CCcCEEECCCCccccc
Q 047128            5 TSLVWLRLGKNKLSVD   20 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~   20 (312)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            5566666666666543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.027  Score=44.57  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccC-CcCC-CCCCCCcEEEccCC-CCCcccchhhHhhcccccc
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTRL-CDLPFLQILDIADT-NLSGAIPNWINNLTGMVTS  107 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l  107 (312)
                      ++.+|-++..|...--+.+. +++.++.|.+.++.--+.. -+.+ +..++|+.|++++| +|+..--..+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45555555555522222232 4555555555554421100 0001 13456677777655 3443333455556666665


Q ss_pred             cccc
Q 047128          108 CSFT  111 (312)
Q Consensus       108 ~l~~  111 (312)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=0.067  Score=42.41  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCC-ccccChhh-cCCCCCcEEECCCc-cCCccCCccccCCCCCCeEe
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSF-TRRIPESI-GVMTSLESIDFSTN-QLSGEIPESMSSLTFSNHLN  226 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~  226 (312)
                      ++.+|-++..|..+--+.+.+++.++.|.+.++.- ...--+.+ +..++|+.|++++| +||+..-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            67788888888766667777888888888887753 21111112 24578999999988 58866666677788888777


Q ss_pred             ccc
Q 047128          227 LSN  229 (312)
Q Consensus       227 l~~  229 (312)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.34  E-value=0.52  Score=23.95  Aligned_cols=17  Identities=29%  Similarity=0.716  Sum_probs=9.9

Q ss_pred             CCCEEECcCCCCCCCCCh
Q 047128           30 TLESLDVGENEFVGNIPT   47 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~   47 (312)
                      +|++|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666666 5554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.01  E-value=0.81  Score=23.30  Aligned_cols=13  Identities=38%  Similarity=0.647  Sum_probs=5.5

Q ss_pred             CCCEEECcCCCCC
Q 047128           30 TLESLDVGENEFV   42 (312)
Q Consensus        30 ~L~~L~l~~n~l~   42 (312)
                      +|+.|+++.|+|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            3444444444443

>PF15102 TMEM154: TMEM154 protein family

Probab=83.66  E-value=2.4  Score=31.71  Aligned_cols=20  Identities=10%  Similarity=0.076  Sum_probs=11.2

Q ss_pred             hhHHHHHHHhhhheeeeccC
Q 047128          293 LGFVVGFWCFMRPLLVRRRW  312 (312)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~w  312 (312)
                      +.++++++++++.+.+.|||
T Consensus        66 VLLvlLLl~vV~lv~~~kRk   85 (146)
T PF15102_consen   66 VLLVLLLLSVVCLVIYYKRK   85 (146)
T ss_pred             HHHHHHHHHHHHheeEEeec
Confidence            33444455555556666776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-14

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 28/283 (9%)
Query: 6   SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
           +L  L L  N L+ +I   L NCT L  + +  N   G IP WIG R   + +L L +N 
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 525
Query: 66  FHGPLPTRLCDLPFLQILDIADTNLSGAIPN--------------------WINNLTGMV 105
           F G +P  L D   L  LD+     +G IP                     +I N  GM 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMK 584
Query: 106 TSCSFTRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNF 160
             C    ++ ++  +  +    L  +      S V  G      D    +  +D+S N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXX 220
           SG IP E+ ++  L  LN  +N  +  IP+ +G +  L  +D S+N+L G IP++M    
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 221 XXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPK 262
                       +G IP   Q ++F  + F  N  LCG P+P+
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 28/283 (9%)
Query: 6   SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
           +L  L L  N L+ +I   L NCT L  + +  N   G IP WIG R   + +L L +N 
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 522
Query: 66  FHGPLPTRLCDLPFLQILDIADTNLSGAIPN--------------------WINNLTGMV 105
           F G +P  L D   L  LD+     +G IP                     +I N  GM 
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMK 581
Query: 106 TSCSFTRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNF 160
             C    ++ ++  +  +    L  +      S V  G      D    +  +D+S N  
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXX 220
           SG IP E+ ++  L  LN  +N  +  IP+ +G +  L  +D S+N+L G IP++M    
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 221 XXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPK 262
                       +G IP   Q ++F  + F  N  LCG P+P+
Sbjct: 702 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP---- 119
           N   GP+P  +  L  L  L I  TN+SGAIP++++ +  +VT      ++   LP    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 120 -LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL------- 171
            LP  VG+      + +S      Y     L   + ISRN  +GKIP    NL       
Sbjct: 147 SLPNLVGITF--DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 172 ----------------KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES 215
                           K    ++ + NS    + + +G+  +L  +D   N++ G +P+ 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 216 MXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPIPKNCT 265
           +                 G+IP    LQ FDVS++A N  LCG+P+P  CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  236 bits (605), Expect = 3e-72
 Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  + +L  L L  N L+ +I   L NCT L  + +  N   G IP WIG R   + +L 
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 520

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L +N F G +P  L D   L  LD+     +G IP  +   +G + +         Y+  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                        +  +G   +  + L+     +I+   + G       N  ++  L+ S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239
           YN  +  IP+ IG M  L  ++   N +SG IP+ +  L   N L+LS+N L G+IP + 
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 240 -----------------------TQLQSFDVSSFAGND-LCGAPIPKNCTEN 267
                                   Q ++F  + F  N  LCG P+P+    N
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  171 bits (436), Expect = 2e-48
 Identities = 82/271 (30%), Positives = 125/271 (46%), Gaps = 40/271 (14%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLK-NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            L SL +L L +NK + +I   L   C TL  LD+  N F G +P + G   S +  L L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLAL 325

Query: 62  RSNKFHGPLPT-RLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-----SCSFTRSVQ 115
            SN F G LP   L  +  L++LD++    SG +P  + NL+  +      S +F+    
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--- 382

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH 175
              P+  ++                       N ++ + +  N F+GKIP  ++N   L 
Sbjct: 383 ---PILPNLCQNP------------------KNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
           SL+ S+N  +  IP S+G ++ L  +    N L GEIP+ +  +     L L  N+LTG+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 236 IPSS----TQLQSFDVSSFAGNDLCGAPIPK 262
           IPS     T L    +S+   N L G  IPK
Sbjct: 482 IPSGLSNCTNLNWISLSN---NRLTG-EIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 1e-47
 Identities = 73/279 (26%), Positives = 113/279 (40%), Gaps = 45/279 (16%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           + + T L  L +  N+    I        +L+ L + EN+F G IP ++      +  L 
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVT----SCSFTRSVQ 115
           L  N F+G +P        L+ L ++  N SG +P + +  + G+         F+    
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--- 357

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN--LKA 173
               LP  +                    ++   +  +D+S NNFSG I   +       
Sbjct: 358 ---ELPESLT-------------------NLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           L  L    N FT +IP ++   + L S+  S N LSG IP S+ SL+    L L  N L 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 234 GKIPSS----TQLQSFDVSSFAGNDLCGAPIPK---NCT 265
           G+IP        L++  +     NDL G  IP    NCT
Sbjct: 456 GEIPQELMYVKTLETLILD---FNDLTG-EIPSGLSNCT 490

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (424), Expect = 9e-47
 Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 57/269 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDI-LVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           GS + L  L L  N  S ++ + +L     L+ LD+  NEF G +P  +    + ++ L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 61  LRSNKFHGPLPTRLCD--LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
           L SN F GP+   LC      LQ L + +   +G IP  ++N + +              
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-------------- 420

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
                                             + +S N  SG IP  + +L  L  L 
Sbjct: 421 --------------------------------VSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
              N     IP+ +  + +LE++    N L+GEIP  +S+ T  N ++LSNN LTG+IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 239 S----TQLQSFDVSSFAGNDLCGAPIPKN 263
                  L    +S+   N   G  IP  
Sbjct: 509 WIGRLENLAILKLSN---NSFSG-NIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  160 bits (406), Expect = 2e-44
 Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 62/271 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           G  ++L  L +  NKLS D   ++  CT L+ L++  N+FVG IP         +  L L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSL 276

Query: 62  RSNKFHGPLPTRLC-DLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             NKF G +P  L      L  LD++  +  GA+P +  + +                  
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS------------------ 318

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNF 179
                                       L   + +S NNFSG++P++    ++ L  L+ 
Sbjct: 319 ---------------------------LL-ESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 180 SYNSFTRRIPESIGVMT-SLESIDFSTNQLSGEIPESMSSLTFSN--HLNLSNNNLTGKI 236
           S+N F+  +PES+  ++ SL ++D S+N  SG I  ++     +    L L NN  TGKI
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 237 PSS----TQLQSFDVSSFAGNDLCGAPIPKN 263
           P +    ++L S  +S    N L G  IP +
Sbjct: 411 PPTLSNCSELVSLHLSF---NYLSG-TIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (392), Expect = 2e-42
 Identities = 53/289 (18%), Positives = 98/289 (33%), Gaps = 77/289 (26%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +GSL+ L  L+L  N L  +I   L    TLE+L +  N+  G IP+ +    + +  + 
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWIS 496

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L +N+  G +P  +  L  L IL +++ + SG IP  + +   +                
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL---------------- 540

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN-- 178
                                           +D++ N F+G IP  +       + N  
Sbjct: 541 ------------------------------IWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 179 --------------------FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSS 218
                                +   F     E +  +++    + ++    G    +  +
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 219 LTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAPIPKN 263
                 L++S N L+G IP        L   ++     ND+ G  IP  
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH---NDISG-SIPDE 675

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (392), Expect = 2e-42
 Identities = 67/269 (24%), Positives = 117/269 (43%), Gaps = 61/269 (22%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +    +L +L +  N  S  I   L +C+ L+ LD+  N+  G+    I    + + +L 
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLN 253

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           + SN+F GP+P     L  LQ L +A+   +G IP++++                     
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA------------------- 292

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                      + +  +D+S N+F G +P    +   L SL  S
Sbjct: 293 --------------------------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 181 YNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-NHLNLSNNNLTGKIPS 238
            N+F+  +P +++  M  L+ +D S N+ SGE+PES+++L+ S   L+LS+NN +G I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 239 S------TQLQSFDVSSFAGNDLCGAPIP 261
           +        LQ   + +   N   G  IP
Sbjct: 387 NLCQNPKNTLQELYLQN---NGFTG-KIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (391), Expect = 2e-42
 Identities = 75/278 (26%), Positives = 111/278 (39%), Gaps = 56/278 (20%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLK---NCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
            L SL  L L  N +S   +V       C  L+ L +  N+  G++   +  R   +  L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VS-RCVNLEFL 205

Query: 60  ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSVQ 115
            + SN F   +P  L D   LQ LDI+   LSG     I+  T +      S  F     
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV---- 260

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT-NLKAL 174
                    G I                    +L + + ++ N F+G+IP  ++     L
Sbjct: 261 ---------GPIPPLPLK--------------SL-QYLSLAENKFTGEIPDFLSGACDTL 296

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES----MSSLTFSNHLNLSNN 230
             L+ S N F   +P   G  + LES+  S+N  SGE+P      M  L     L+LS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV---LDLSFN 353

Query: 231 NLTGKIPS-----STQLQSFDVSSFAGNDLCGAPIPKN 263
             +G++P      S  L + D+SS   N+  G PI  N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSS---NNFSG-PILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (371), Expect = 1e-39
 Identities = 66/272 (24%), Positives = 100/272 (36%), Gaps = 67/272 (24%)

Query: 2   GSLTSLVWLRLGKNKLSVDI--LVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
               SL  L L +N LS  +  L SL +C+ L+ L+V  N          G + + + VL
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 60  ILRSNKFHGPLPTRLCD---LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ 116
            L +N   G              L+ L I+   +SG +   ++                 
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV-------------- 200

Query: 117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS 176
                                          NL   +D+S NNFS  IP  + +  AL  
Sbjct: 201 -------------------------------NL-EFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFSNHLNLSNNNLTGK 235
           L+ S N  +     +I   T L+ ++ S+NQ  G IP   + SL    +L+L+ N  TG+
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ---YLSLAENKFTGE 284

Query: 236 IPSS-----TQLQSFDVSSFAGNDLCGAPIPK 262
           IP         L   D+S   GN   G  +P 
Sbjct: 285 IPDFLSGACDTLTGLDLS---GNHFYG-AVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (346), Expect = 3e-36
 Identities = 60/271 (22%), Positives = 103/271 (38%), Gaps = 41/271 (15%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             +TS+       N     +  SL + T LESL +  +   G++        + +  L L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFK-CSASLTSLDL 107

Query: 62  RSNKFHGPLPTR--LCDLPFLQILDIADTNLSGAIP-NWINNLTGMVT----SCSFTRSV 114
             N   GP+ T   L     L+ L+++   L      +    L  +      + S +   
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS--- 164

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
                     G  +V                    ++ + IS N  SG + +  +    L
Sbjct: 165 ----------GANVVGWVLSDG----------CGELKHLAISGNKISGDVDV--SRCVNL 202

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
             L+ S N+F+  IP  +G  ++L+ +D S N+LSG+   ++S+ T    LN+S+N   G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 235 KIPSS--TQLQSFDVSSFAGNDLCGAPIPKN 263
            IP      LQ   ++    N   G  IP  
Sbjct: 262 PIPPLPLKSLQYLSLAE---NKFTG-EIPDF 288

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (505), Expect = 5e-62
 Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 31/268 (11%)

Query: 2   GSLTSLVWLRL-GKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            +L  L +L + G N L   I  ++   T L  L +      G IP ++  +   +V L 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLD 131

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL-- 118
              N   G LP  +  LP L  +      +SGAIP+   + + + TS + +R+    L  
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---RLTG 188

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
            +P                         LNL   +D+SRN   G   +   + K    ++
Sbjct: 189 KIPPTFAN--------------------LNLAF-VDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
            + NS    +   +G+  +L  +D   N++ G +P+ ++ L F + LN+S NNL G+IP 
Sbjct: 228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 239 STQLQSFDVSSFAGND-LCGAPIPKNCT 265
              LQ FDVS++A N  LCG+P+P  CT
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 7e-45
 Identities = 60/269 (22%), Positives = 92/269 (34%), Gaps = 59/269 (21%)

Query: 1   MGSLTSLVWLRLGKNKLS--VDILVSLKNCTTLESLDV-GENEFVGNIPTWIGERFSRMV 57
                 +  L L    L     I  SL N   L  L + G N  VG IP  I  + +++ 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLH 104

Query: 58  VLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
            L +      G +P  L  +  L  LD +   LSG +P  I++L                
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--------------- 149

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH-S 176
                                         NL   I    N  SG IP    +   L  S
Sbjct: 150 ------------------------------NL-VGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236
           +  S N  T +IP +   + +L  +D S N L G+      S   +  ++L+ N+L   +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 237 PS---STQLQSFDVSSFAGNDLCGAPIPK 262
                S  L   D+ +   N + G  +P+
Sbjct: 238 GKVGLSKNLNGLDLRN---NRIYG-TLPQ 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (346), Expect = 2e-38
 Identities = 68/249 (27%), Positives = 97/249 (38%), Gaps = 62/249 (24%)

Query: 24  SLKNCTTLES----LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG--PLPTRLCDL 77
            L N TTL S     D     ++G +      +  R+  L L         P+P+ L +L
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 78  PFLQILDIADTN-LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVS 136
           P+L  L I   N L G IP  I  LT                                  
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLT---------------------------------- 101

Query: 137 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMT 196
                       L   + I+  N SG IP  ++ +K L +L+FSYN+ +  +P SI  + 
Sbjct: 102 -----------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 197 SLESIDFSTNQLSGEIPESMSSLT-FSNHLNLSNNNLTGKIPSS---TQLQSFDVSSFAG 252
           +L  I F  N++SG IP+S  S +     + +S N LTGKIP +     L   D+S    
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR--- 206

Query: 253 NDLCGAPIP 261
           N L G    
Sbjct: 207 NMLEG-DAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 51/184 (27%)

Query: 1   MGSLTSLV-WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
            GS + L   + + +N+L+  I  +  N   L  +D+  N   G+     G        +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNTQKI 226

Query: 60  ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP 119
            L  N     L  ++     L  LD+ +  + G +P  +  L  +             L 
Sbjct: 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-----------HSL- 273

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                             ++S NN  G+IP +  NL+      +
Sbjct: 274 ----------------------------------NVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 180 SYNS 183
           + N 
Sbjct: 299 ANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 163 KIPLEVTNLKALHS----LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGE--IPESM 216
           +I  ++ N   L S     +    ++   + ++      + ++D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 217 SSLTFSNHLNLSN-NNLTGKIPSS----TQLQSFDVSSFAGNDLCGAPIP 261
           ++L + N L +   NNL G IP +    TQL    ++     ++ G  IP
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG-AIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +G   +L  L L  N++   +   L     L SL+V  N   G IP   G    R  V  
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSA 297

Query: 61  LRSNKFH--GPLP 71
             +NK     PLP
Sbjct: 298 YANNKCLCGSPLP 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (292), Expect = 3e-29
 Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 52/284 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIG-ERFSRMVVLI 60
           GS   L  L L  N+++            +E+L    N+    IP     +  S M  + 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAID 408

Query: 61  LRSNKFHG-------PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCS 109
              N+          PL         +  +++++  +S       +  + + +       
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIP-- 165
            T        +P +                    E+  N      ID+  N  +  +   
Sbjct: 469 LTE-------IPKNSLKDE--------------NENFKNTYLLTSIDLRFNKLTK-LSDD 506

Query: 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESI------DFSTNQLSGEIPESMSSL 219
              T L  L  ++ SYNSF+ + P      ++L+        D   N+   E PE ++  
Sbjct: 507 FRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 220 TFSNHLNLSNNNLTGKIPSS--TQLQSFDVSSFAGNDLCGAPIP 261
                L + +N++   +       +   D+     N      + 
Sbjct: 566 PSLTQLQIGSNDIRK-VNEKITPNISVLDIK---DNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (283), Expect = 6e-28
 Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 38/259 (14%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
                   +    N ++  +  ++   T L    +G + FV        E          
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE------NENS 232

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSVQQY 117
              + +     +  +L  L  +++ +      +P ++  L  M                 
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----S 287

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTNLKALHS 176
                D    L +               +   +++I I  NN  +  +   +  +K L  
Sbjct: 288 GEQLKDDWQALAD-------------APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236
           L   YN        + G    L S++ + NQ++              +L+ ++N L   I
Sbjct: 335 LECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 237 PSS------TQLQSFDVSS 249
           P+       + + + D S 
Sbjct: 393 PNIFDAKSVSVMSAIDFSY 411

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 3e-26
 Identities = 37/263 (14%), Positives = 75/263 (28%), Gaps = 55/263 (20%)

Query: 2   GSLTSLVWLRLGKNKLS-VDILVSLKNCTTLESLDVGENEFVG-------NIPTWIGERF 53
           G    +  L    NKL  +  +   K+ + + ++D   NE           +      + 
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF-KG 432

Query: 54  SRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSG-------AIPNWINNLTGMVT 106
             +  + L +N+              L  +++    L+               N   + +
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 107 ----SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
                   T+     L                           +  L   ID+S N+FS 
Sbjct: 493 IDLRFNKLTK-----LSDDFRAT-------------------TLPYL-VGIDLSYNSFSK 527

Query: 163 KIPLEVTNLKAL------HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM 216
             P +  N   L      +  +   N   R  PE I +  SL  +   +N +     +  
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 217 SSLTFSNHLNLSNNNLTGKIPSS 239
            +++    L++ +N       S 
Sbjct: 587 PNIS---VLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 5e-26
 Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 62/281 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV--------GNIPTWIGERF 53
            +L  L  + +        +   LK    ++ ++V  N  +                   
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP-VG 304

Query: 54  SRMVVLILRSNKF-HGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SC 108
            ++ ++ +  N     P+ T L  +  L +L+     L G +P    +   + +      
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN 363

Query: 109 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP--L 166
             T        +P +                         +   +  + N     IP   
Sbjct: 364 QITE-------IPANFCGFTE------------------QV-ENLSFAHNKLKY-IPNIF 396

Query: 167 EVTNLKALHSLNFSYNSFT-------RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSL 219
           +  ++  + +++FSYN            +  +     ++ SI+ S NQ+S    E  S+ 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 220 TFSNHLNLSNNNLTG-------KIPSS----TQLQSFDVSS 249
           +  + +NL  N LT            +      L S D+  
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 9e-26
 Identities = 35/249 (14%), Positives = 64/249 (25%), Gaps = 52/249 (20%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG---NIPTWIGERFSRM-- 56
               ++  + L  N++S          + L S+++  N       N      E F     
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 57  -VVLILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSV 114
              + LR NK        R   LP+L  +D++  + S   P    N + +          
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG-------- 540

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
                                             +    D   N    + P  +T   +L
Sbjct: 541 --------------------------------FGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
             L    N   + + E I    ++  +D   N         +     +    L  +    
Sbjct: 569 TQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ- 624

Query: 235 KIPSSTQLQ 243
            I     L 
Sbjct: 625 DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (259), Expect = 7e-25
 Identities = 33/270 (12%), Positives = 74/270 (27%), Gaps = 54/270 (20%)

Query: 2   GSLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGNIPTWIG-ERFSRM 56
           G LT L  L LG +   V+        +    + E        +      +   E FS +
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTR 112
           +   + S+     +            +     N++  +   +  LT +      +  F  
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA 220

Query: 113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 172
                                            I       +           L+  NLK
Sbjct: 221 EN-------------------------------ICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 173 ALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSN------H 224
            L  +         ++P  +  +  ++ I+ + N+     ++ +   +L  +        
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 225 LNLSNNNL-TGKIPSS----TQLQSFDVSS 249
           + +  NNL T  + +S     +L   +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 9e-23
 Identities = 32/280 (11%), Positives = 69/280 (24%), Gaps = 52/280 (18%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           + S   +  L L     S  +  ++   T LE L +G +    N   +  +  S  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 61  LRSNKFHGPLPTRLCDLPFLQILD-----IADTNLSGAIPNWINNLTGMVTSCSFTRSVQ 115
            +         T +   P     D     I       +I                 +   
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT---QIGQLSN 193

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKA 173
               +                       + ++ L   R   +  + F  +   E      
Sbjct: 194 NITFVS----------------------KAVMRLTKLRQFYMGNSPFVAENICEAWEN-- 229

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
               N  Y    +        +  L  ++        ++P  + +L     +N++ N   
Sbjct: 230 ---ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 234 G------------KIPSSTQLQSFDVSSFAGNDLCGAPIP 261
                          P   ++Q   +     N+L   P+ 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIG---YNNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 33/249 (13%), Positives = 63/249 (25%), Gaps = 38/249 (15%)

Query: 23  VSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP----LPTRLCDLP 78
           VSL +   +  L +      G +P  IG + + + VL L S+          P  +    
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 79  FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKG 138
             +       +      ++               S  Q   +     +            
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI------------ 181

Query: 139 EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL 198
                   L   + I    NN +  +   V  L  L       + F            + 
Sbjct: 182 -------TLKDTQ-IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 199 ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGND 254
           E       Q          +L     + + N     K+P+      ++Q  +V+    N 
Sbjct: 233 E-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC---NR 284

Query: 255 LCGAPIPKN 263
                  K+
Sbjct: 285 GISGEQLKD 293

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGE------NEFVGNIPTWIGERFS 54
             +L  LV + L  N  S        N +TL+   +        N  +   P  I     
Sbjct: 509 ATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCP 566

Query: 55  RMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM 104
            +  L + SN     +  ++   P + +LDI D        +++      
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 14/152 (9%)

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
            V + L   A  +      DY  +  +   ++    +  G       N     + N   +
Sbjct: 17  IVPIKLSRTAEYIK-----DYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKELD 67

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS--- 239
            +  +   S+     +  +       SG +P+++  LT    L L ++            
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 240 --TQLQSFDVSSFAGNDLCGAPIPKNCTENVS 269
             +   S +             +  +  E+ S
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (284), Expect = 4e-28
 Identities = 52/272 (19%), Positives = 81/272 (29%), Gaps = 48/272 (17%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           + + L  L L KNK+S     +      LE LD+G NE    +          +  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSG--AIPNWINNLTGMVT----SCSFTRSVQQ 116
            NK+          +P LQ L +    L    + P+    L  +      + +       
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS--------GKIPLEV 168
            L                         E +  L  ++D+  NN +        G     +
Sbjct: 499 ML-------------------------EGLEKL-EILDLQHNNLARLWKHANPGGPIYFL 532

Query: 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228
             L  LH LN   N F     E    +  L+ ID   N L+       ++      LNL 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 229 NNNLTGKIPSS-----TQLQSFDVSSFAGNDL 255
            N +T             L   D+     N  
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMR---FNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 7e-28
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 33/272 (12%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVS-LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
             L  L  L LG N++  ++     +    +  + +  N+++             +  L+
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLM 460

Query: 61  LRSNKFHG--PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSV 114
           LR          P+    L  L ILD+++ N++    + +  L  +        +  R  
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
           +   P                  G  + +   L+ + ++++  N F         +L  L
Sbjct: 521 KHANP------------------GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMS-SLTFSNHLNLSNNNLT 233
             ++   N+             SL+S++   N ++    +    +      L++  N   
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 234 GKIPSSTQLQSF------DVSSFAGNDLCGAP 259
               S     ++      ++   + + LC  P
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 7e-26
 Identities = 41/263 (15%), Positives = 91/263 (34%), Gaps = 30/263 (11%)

Query: 2   GSLTSLVWLRLGKNKLSVDI---LVSLKNCTTLESLDVGENEFVGNIPTWI-GERFSRMV 57
            ++  L  L L   +L   +   L      T++ +L +  ++      T   G +++ + 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 58  VLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
           +L L  N  +         LP L+   +   N+     + ++ L  +           +Y
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV-----------RY 300

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNL--VRMIDISRNNFSGKIPLEVTNLKALH 175
           L L        +  AS+      +D      L  +  +++  N+  G      T L  L 
Sbjct: 301 LNLKRSFTKQSISLASL----PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 176 SLNFSYNSFTRRIPESIG----VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
            L+ S +  + R   +        + L  ++ + N++S    ++ S L     L+L  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 232 LTGKIPSS-----TQLQSFDVSS 249
           +  ++          +    +S 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSY 439

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (250), Expect = 1e-23
 Identities = 44/259 (16%), Positives = 77/259 (29%), Gaps = 33/259 (12%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              T+L  L L  N +             L +LD+  N            +   +  L+L
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLL 152

Query: 62  RSNKFHG--PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSVQ 115
            +NK          +     L+ L+++   +    P   + +  +      +     S+ 
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK--A 173
           + L L +                           +R + +S +  S         LK   
Sbjct: 213 EKLCLELA-----------------------NTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           L  L+ SYN+      +S   +  LE      N +      S+  L    +LNL  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 234 GKIPSSTQLQSFDVSSFAG 252
             I S   L   D  SF  
Sbjct: 310 QSI-SLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 56/257 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              T++  L L  N+L      +    + L SLDVG N      P     +   + VL L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNL 80

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
           + N+              L  L +   ++     N                         
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK------------------- 121

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     NL   +D+S N  S         L+ L  L  S 
Sbjct: 122 --------------------------NL-ITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 182 NSFTRRIPESIGVM--TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           N       E + +   +SL+ ++ S+NQ+    P    ++     L L+N  L   +   
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 240 -------TQLQSFDVSS 249
                  T +++  +S+
Sbjct: 215 LCLELANTSIRNLSLSN 231

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 39/271 (14%), Positives = 82/271 (30%), Gaps = 48/271 (17%)

Query: 1   MGSLTSLVWLRLGKNKLSV-----DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSR 55
              L +L +L L  +  S+     +  VSL + + L  L++ +N+               
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSW-LGH 406

Query: 56  MVVLILRSNKFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSF 110
           + VL L  N+    L  +    L  +  + ++         N    +  +        + 
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN 170
                    +                          L  + ++D+S NN +      +  
Sbjct: 467 KN-------VDSSPSPF-----------------QPLRNLTILDLSNNNIANINDDMLEG 502

Query: 171 LKALHSLNFSYNSFTR--------RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222
           L+ L  L+  +N+  R             +  ++ L  ++  +N       E    L   
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 223 NHLNLSNNNLTGKIPSS----TQLQSFDVSS 249
             ++L  NNL     S       L+S ++  
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 43/262 (16%), Positives = 80/262 (30%), Gaps = 35/262 (13%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
            T+L  L L  N L+V    S      LE   +  N         +      +  L L+ 
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKR 305

Query: 64  NKFHGPL---------PTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSV 114
           +     +               L  L+ L++ D ++ G   N    L  +    S + S 
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL-KYLSLSNSF 364

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
                L  +  V L                   + + ++++++N  S       + L  L
Sbjct: 365 TSLRTLTNETFVSL-----------------AHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 175 HSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
             L+   N   + +  +    + ++  I  S N+       S + +     L L    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 234 G--KIPSS----TQLQSFDVSS 249
                PS       L   D+S+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 37/261 (14%), Positives = 73/261 (27%), Gaps = 59/261 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERF--SRMVVL 59
            + +SL  L L  N++             L  L +   +   ++   +      + +  L
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 60  ILRSNKFHGPLPTRLCDLPF--LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
            L +++      T    L +  L +LD++  NL+    +    L                
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--------------- 272

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSL 177
                                          L     +  NN        +  L  +  L
Sbjct: 273 ------------------------------QL-EYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 178 N---------FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228
           N          S  S  +    S   +  LE ++   N + G      + L    +L+LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 229 NNNLTGKIPSSTQLQSFDVSS 249
           N+  + +  ++    S   S 
Sbjct: 362 NSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 40/279 (14%), Positives = 75/279 (26%), Gaps = 66/279 (23%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIP---TWIGERFSRMVV 58
             L  L  L +  N +             L+ L +  +          T++    S + +
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI--------------NNLTGM 104
           L L  NK           L  L++LD+    +   +                  N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ- 444

Query: 105 VTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG-- 162
           +T  SF                                    +  ++ + + R       
Sbjct: 445 LTRNSFAL----------------------------------VPSLQRLMLRRVALKNVD 470

Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS--------GEIPE 214
             P     L+ L  L+ S N+      + +  +  LE +D   N L+        G    
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530

Query: 215 SMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSS 249
            +  L+  + LNL +N              +L+  D+  
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 57/229 (24%)

Query: 28  CTT-LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86
           CT   E  D    +    +P  +    + + VL L  N+              L  LD+ 
Sbjct: 2   CTVSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 87  DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 146
              +S   P     L                                             
Sbjct: 58  FNTISKLEPELCQKLP-------------------------------------------- 73

Query: 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTN 206
             L +++++  N  S            L  L+   NS  +          +L ++D S N
Sbjct: 74  -ML-KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 207 QLSGEIPESMSSLTFSNHLNLSNNNLTGKIP------SSTQLQSFDVSS 249
            LS     +   L     L LSNN +           +++ L+  ++SS
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 9/109 (8%)

Query: 1   MGSLTSLVWLRLGKNKLSV--------DILVSLKNCTTLESLDVGENEFVGNIPTWIGER 52
           +  L  L  L L  N L+           +  LK  + L  L++  N F         + 
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD- 558

Query: 53  FSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNL 101
              + ++ L  N  +    +   +   L+ L++    ++          
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 2e-27
 Identities = 43/257 (16%), Positives = 82/257 (31%), Gaps = 57/257 (22%)

Query: 2   GSLTSLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
             L SL +L L +N LS       S    T+L+ LD+  N  +     ++G    ++  L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHL 401

Query: 60  ILRSNKFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
             + +             L  L  LDI+ T+   A     N L+                
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------------- 445

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSL 177
                                        +L  ++ ++ N+F      ++ T L+ L  L
Sbjct: 446 -----------------------------SL-EVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
           + S     +  P +   ++SL+ ++ S N            L     L+ S N++     
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 238 SS-----TQLQSFDVSS 249
                  + L   +++ 
Sbjct: 536 QELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (271), Expect = 2e-26
 Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 47/239 (19%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              TSL +L L  N +   +  +      LE LD   +         +      ++ L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
                          L  L++L +A            N+         FT          
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAG-----------NSFQENFLPDIFTE--------- 468

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                    L  +  +D+S+       P    +L +L  LN S+
Sbjct: 469 -------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-NHLNLSNNNLTGKIPSS 239
           N+F          + SL+ +D+S N +     + +     S   LNL+ N+        
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 6e-22
 Identities = 45/241 (18%), Positives = 71/241 (29%), Gaps = 53/241 (21%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
            S   L L  N L      S  +   L+ LD+   E             S +  LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN 86

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
                       L  LQ L   +TNL+      I +L                       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---------------------- 124

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTNLKALHSLNFSYNS 183
                                   L + ++++ N   S K+P   +NL  L  L+ S N 
Sbjct: 125 -----------------------TL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 184 FTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
                   + V+  +     S+D S N ++   P +   +     L L NN  +  +  +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKT 219

Query: 240 T 240
            
Sbjct: 220 C 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 47/286 (16%), Positives = 79/286 (27%), Gaps = 75/286 (26%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             LT++    L    +    +         + L++   +F G  PT   +   R+     
Sbjct: 279 NCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSN 335

Query: 62  RSNK---------------------FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI-- 98
           +                        F G           L+ LD++   +     N++  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 99  ----------NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN 148
                     +NL  M     F                                    L 
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS----------------------------------LR 421

Query: 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRI-PESIGVMTSLESIDFSTNQ 207
            +  +DIS  +           L +L  L  + NSF     P+    + +L  +D S  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 208 LSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSS 249
           L    P + +SL+    LN+S+NN              LQ  D S 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 37/271 (13%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SL+ L  L L  N +    L +    ++L+ L   E          IG     +  L +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNV 131

Query: 62  RSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             N      LP    +L  L+ LD++   +       +  L  M             L L
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-----------PLLNL 180

Query: 121 PIDVGV--ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSL 177
            +D+ +  +   +     +         + L   + +  N  S  +       L  L   
Sbjct: 181 SLDLSLNPMNFIQPGAFKE---------IRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 178 NFSYNSFTRRI---PESIGVMTSLESIDFSTNQLS------GEIPESMSSLTFSNHLNLS 228
                 F             +  L ++     +L+       +I +  + LT  +  +L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 229 NNNLTGKIPSS--TQLQSFDVSSFAGNDLCG 257
           +  +      S     Q  ++ +        
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 39/257 (15%), Positives = 71/257 (27%), Gaps = 58/257 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   L  L L + ++      + ++ + L +L +  N              S +  L+ 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVA 107

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNL-SGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
                       +  L  L+ L++A   + S  +P + +NLT                  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------------------ 149

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH----S 176
                                      NL   +D+S N        ++  L  +     S
Sbjct: 150 ---------------------------NL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTFSNHLNLSNNNLTGK 235
           L+ S N     I         L  +    N  S  + +  +  L       L        
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-- 238

Query: 236 IPSSTQLQSFDVSSFAG 252
             +   L+ FD S+  G
Sbjct: 239 --NEGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 5e-18
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 41/217 (18%)

Query: 45  IPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM 104
           IP  +         L L  N             P LQ+LD++   +         +L+ +
Sbjct: 22  IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 105 VT----SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160
            T                                           + +L + +     N 
Sbjct: 79  STLILTGNPIQSLALGAF-------------------------SGLSSL-QKLVAVETNL 112

Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSGEIPESMSSL 219
           +      + +LK L  LN ++N     ++PE    +T+LE +D S+N++       +  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 220 T----FSNHLNLSNNNLTGKIPSS---TQLQSFDVSS 249
                 +  L+LS N +    P +    +L    + +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 40/272 (14%), Positives = 76/272 (27%), Gaps = 46/272 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L+SL  L   +  L+      + +  TL+ L+V  N              + +  L L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 62  RSNKFHGPLPTRLCDLPFLQI----LDIADTNLSGAIPNWI------------NNLTGMV 105
            SNK      T L  L  + +    LD++   ++   P               N  +  V
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 106 TSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164
                   +  +   L                        +  N   +    ++   G  
Sbjct: 217 MKTCIQGLAGLEVHRL---------------------VLGEFRNEGNLEKFDKSALEGLC 255

Query: 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH 224
            L +   + L  L++  +     I +    +T++ S    +  +      S        H
Sbjct: 256 NLTIEEFR-LAYLDYYLDD----IIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQH 308

Query: 225 LNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDL 255
           L L N             L+    +S  G + 
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 39/267 (14%), Positives = 78/267 (29%), Gaps = 54/267 (20%)

Query: 3   SLTSLVWLRLGKNKLSVDIL-VSLKNCTTLESLDVGENEFVG--NIPTWIGERFSRMVVL 59
               L  L L  N  S++++   ++    LE   +   EF    N+  +       +  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 60  ILRSNK------FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCS 109
            +   +      +   +      L  +    +    +        +   G       +C 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 169
           F +                                  L L  +  ++  +  G       
Sbjct: 316 FGQF-------------------------------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 170 NLKALHSLNFSYNSFTRR--IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227
           +L +L  L+ S N  + +    +S    TSL+ +D S N +   +  +   L    HL+ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 228 SNNNLTGKIPSS-----TQLQSFDVSS 249
            ++NL      S       L   D+S 
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISH 430

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           +++    + +D+S N           +   L  L+ S          +   ++ L ++  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAP 259
           + N +      + S L+    L     NL             L+  +V+    N +    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFK 140

Query: 260 IPK 262
           +P+
Sbjct: 141 LPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 49/289 (16%), Positives = 82/289 (28%), Gaps = 43/289 (14%)

Query: 1   MGSLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS---RM 56
           +G L +L  L +  N + S  +     N T LE LD+  N+      T +          
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGM-VTSCSFTRSV 114
           + L L  N  +   P    ++  L  L + +   S  +    I  L G+ V         
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL----------VRMIDISRNNFSGKI 164
            +      D   +       + +  +   +  L+           V    +         
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 165 PLEVTNLKALHSLNFSYNSFTR-------------------RIPESIGVMTSLESIDFST 205
               +       L      F +                       S   + SLE +D S 
Sbjct: 299 DF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 206 NQLS--GEIPESMSSLTFSNHLNLSNNNLTG---KIPSSTQLQSFDVSS 249
           N LS  G   +S    T   +L+LS N +           QL+  D   
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 50/230 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SL +L++L +      V         ++LE L +  N F  N    I      +  L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
              +     PT    L  LQ+L+++  N           L                    
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------------------- 518

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL-KALHSLNFS 180
                                     +L +++D S N+       E+ +   +L  LN +
Sbjct: 519 --------------------------SL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 181 YNSFTRRIPES--IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228
            N F         +  +     +     ++    P     +   + LN++
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS-LNIT 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (259), Expect = 9e-25
 Identities = 34/262 (12%), Positives = 72/262 (27%), Gaps = 60/262 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             +  L  L    NK+    L +      L  L +  N+    IP        ++  L  
Sbjct: 570 QKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626

Query: 62  RSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             NK    P       +  +  +D +   +     N   ++                   
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY---------------- 670

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                     +N    + +S N               + ++  S
Sbjct: 671 ------------------------KGINAST-VTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 181 YNSFT-------RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSN--HLNLSNNN 231
            N  T       +    +      L +ID   N+L+  + +   + T     ++++S N 
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764

Query: 232 LTGKIPSS----TQLQSFDVSS 249
            +   P+     +QL++F +  
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRH 785

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (257), Expect = 1e-24
 Identities = 36/277 (12%), Positives = 80/277 (28%), Gaps = 60/277 (21%)

Query: 3   SLTSLVWLRLGKNKLS-VDILVSLKNCTTLESLDVGENEFVGNIPTWIGE----RFSRMV 57
               +  L    NKL  +  + + K+   + S+D   N+               +     
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 58  VLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
            + L  N+              +  + +++  ++    N +    G   +          
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY-------- 728

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP--LEVTNLKALH 175
                                          L   ID+  N  +  +      T L  L 
Sbjct: 729 ------------------------------LL-TTIDLRFNKLTS-LSDDFRATTLPYLS 756

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESI------DFSTNQLSGEIPESMSSLTFSNHLNLSN 229
           +++ SYN F+   P      + L++       D   N++  + P  +++      L + +
Sbjct: 757 NMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 230 NNLTGKIPSS--TQLQSFDVSSFAGNDLCGAPIPKNC 264
           N++  K+      QL   D++    N      +   C
Sbjct: 816 NDIR-KVDEKLTPQLYILDIA---DNPNISIDVTSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 3e-21
 Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 45/277 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL-- 59
           G LT L  L  G +  +V   +      T +  +  ++    +      +   R+ +   
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 60  ----ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFT 111
               I R+ +           L   QI ++  TN    I   I  LT +      +  FT
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVT 169
                Y  + +D      + A      E        NL     +++       ++P  + 
Sbjct: 462 -----YDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 170 NLKALHSLNFSYNSFT---------RRIPESIGVMTSLESIDFSTNQLSGEIPES----- 215
           +L  L SLN + N             R+ +       ++      N L  E P S     
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571

Query: 216 MSSLTFSNHLNLSNNNLTGKIPS---STQLQSFDVSS 249
           M  L     L+  +N +   + +   + +L    +  
Sbjct: 572 MVKLG---LLDCVHNKVR-HLEAFGTNVKLTDLKLDY 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 8e-21
 Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 38/255 (14%)

Query: 6   SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
               +    N+++  I  +++  T L+ +    + F  +                    K
Sbjct: 426 KDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAK 478

Query: 66  FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG 125
            +        +L  L  +++ +      +P+++ +L  + +               +++ 
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS---------------LNIA 523

Query: 126 V--ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT--NLKALHSLNFSY 181
               +           + D ED    +++  +  NN     P   +   +  L  L+  +
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVH 582

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-NHLNLSNNNLTGKIPSS- 239
           N       E+ G    L  +    NQ+  EIPE   + T     L  S+N L   IP+  
Sbjct: 583 NKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

Query: 240 -----TQLQSFDVSS 249
                  + S D S 
Sbjct: 639 NAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 1e-20
 Identities = 38/281 (13%), Positives = 80/281 (28%), Gaps = 64/281 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG---------NIPTWIGER 52
            +L  L  + L        +   L +   L+SL++  N  +           +       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-T 546

Query: 53  FSRMVVLILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----S 107
             ++ +  +  N     P    L  +  L +LD     +   +         +       
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDY 604

Query: 108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-- 165
                       +P D                        + V  +  S N     IP  
Sbjct: 605 NQIEE-------IPEDFC-------------------AFTDQVEGLGFSHNKLKY-IPNI 637

Query: 166 LEVTNLKALHSLNFSYNSFTRRIPESIGV------MTSLESIDFSTNQLSGEIPESMSSL 219
               ++  + S++FSYN        +I          +  ++  S N++     E  ++ 
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 220 TFSNHLNLSNNNLT-----------GKIPSSTQLQSFDVSS 249
           +  + + LSNN +T           G   ++  L + D+  
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 36/283 (12%), Positives = 72/283 (25%), Gaps = 65/283 (22%)

Query: 1   MGSLTSLVWLRLGKNKLS---------VDILVSLKNCTTLESLDVGENEFVGNIPTWIGE 51
           +  L  L  L +  N+             +         ++   +G N       +   +
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 52  RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----- 106
           +  ++ +L    NK    L         L  L +    +   IP      T  V      
Sbjct: 571 KMVKLGLLDCVHNKVRH-LEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFS 627

Query: 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM--IDISRNNFSGKI 164
                        +P                          ++  M  +D S N    + 
Sbjct: 628 HNKLKY-------IPNIFN--------------------AKSVYVMGSVDFSYNKIGSEG 660

Query: 165 P-----LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS-------GEI 212
                 ++        ++  SYN   +   E     + + +I  S N ++          
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 213 PESMSSLTFSNHLNLSNNNLTGKIPSS------TQLQSFDVSS 249
             +  +      ++L  N LT  +           L + DVS 
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.3 bits (211), Expect = 1e-18
 Identities = 32/260 (12%), Positives = 74/260 (28%), Gaps = 31/260 (11%)

Query: 23  VSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82
           V L N   +  L +      G +P  IG + + + VL   ++           +     +
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 83  LDIADTNLSGAIPN----WINNLTGMVTSCSFTRSVQQYLPLPIDVGVIL--VEKASVVS 136
            +     +          +   L              +  P+  D  + L   +  ++ +
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 137 KGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV 194
           +   +    I  L   ++I  + + F+                N  Y         S   
Sbjct: 436 RITFISKA-IQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSN 489

Query: 195 MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG---------KIPSS----TQ 241
           +  L  ++        ++P+ +  L     LN++ N             ++        +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 242 LQSFDVSSFAGNDLCGAPIP 261
           +Q F +     N+L   P  
Sbjct: 550 IQIFYMGY---NNLEEFPAS 566

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.0 bits (205), Expect = 9e-18
 Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 45/250 (18%)

Query: 1   MGSLTSLVWLRLGKNKLS---VDILVSLK--NCTTLESLDVGENEFVGNIPTWIGERFSR 55
             S+  +  +    NK+     +I  S+         ++ +  NE             S 
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA-TGSP 698

Query: 56  MVVLILRSNKF-------HGPLPTRLCDLPFLQILDIADTNLSGAIPNWIN-----NLTG 103
           +  +IL +N           P      +   L  +D+    L+  + +         L+ 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSN 757

Query: 104 M-VTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
           M V+   F+       P        L                    +    D   N    
Sbjct: 758 MDVSYNCFS-----SFPTQPLNSSQLKA----------------FGIRHQRDAEGNRILR 796

Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL-SGEIPESMSSLTF 221
           + P  +T   +L  L    N    ++ E +     L  +D + N   S ++      +  
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA 853

Query: 222 SNHLNLSNNN 231
             ++ L +  
Sbjct: 854 GMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.9 bits (197), Expect = 9e-17
 Identities = 38/268 (14%), Positives = 71/268 (26%), Gaps = 81/268 (30%)

Query: 2   GSLTSLVWLRLGKNKLSVDIL-------------------VSLKNCTTLESLDVGENEFV 42
             LT L  +    +  + D +                   +S  N   L  +++     +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 43  GNIPTWIGERFSRMVVLILRSNKFHGP---------LPTRLCDLPFLQILDIADTNLSGA 93
             +P ++      +  L +  N+             L       P +QI  +        
Sbjct: 505 TQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY------ 557

Query: 94  IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMI 153
                NNL     S S  +                                  +  + ++
Sbjct: 558 -----NNLEEFPASASLQK----------------------------------MVKLGLL 578

Query: 154 DISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIG-VMTSLESIDFSTNQLSGEI 212
           D   N     +         L  L   YN     IPE        +E + FS N+L   I
Sbjct: 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634

Query: 213 PE--SMSSLTFSNHLNLSNNNLTGKIPS 238
           P   +  S+     ++ S N +  +  +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 22/221 (9%), Positives = 53/221 (23%), Gaps = 63/221 (28%)

Query: 2   GSLTSLVWLRLGKNKLS-------VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS 54
            + + +  + L  N ++            + KN   L ++D+  N+       +      
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 55  RMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT------NLSGAIPNWINNLTGMVTSC 108
            +  + +  N F    PT+  +   L+   I          +    P  I     +    
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL---- 808

Query: 109 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 168
                                                       + I  N+   K+  ++
Sbjct: 809 ------------------------------------------IQLQIGSNDIR-KVDEKL 825

Query: 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209
                L+ L+ + N        S+             ++  
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 12/105 (11%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 153 IDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI 212
            +   + +  +  +++ N   +  L+ +      R+P++IG +T L+ + F T+  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 213 PESMSSLTFSNHLNLSNNNLTGKIPSST--QLQSFDVSSFAGNDL 255
                     +      + +            Q  ++S    + +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 142 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESI 201
           DY+ +  +   +D     +     +  T      + N   + +  +    +     +  +
Sbjct: 270 DYKALKAIWEALDGKNWRYYS-GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 202 DFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQ 243
             +     G +P+++  LT    L+   ++ T         +
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 16/152 (10%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTN--- 206
           V  + ++     G++P  +  L  L  L+F  +S T           + +  +   +   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 207 ----QLSGEIPESMSSLTFS-----------------------NHLNLSNNNLTGKIPSS 239
               ++  +  + ++                              +    N +T  I  +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 240 ----TQLQSFDVSSFAGNDLCGAPIPKNCTEN 267
               T+LQ    +    +      I  +  + 
Sbjct: 444 IQRLTKLQIIYFA---NSPFTYDNIAVDWEDA 472

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 4e-20
 Identities = 37/250 (14%), Positives = 70/250 (28%), Gaps = 47/250 (18%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +    V L L    L           + L+ + +     +  +P  +  +F+ +  L L 
Sbjct: 79  TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLA 135

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N     LP  +  L  L+ L I        +P  + +                      
Sbjct: 136 RNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV----------- 183

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                    NL + + +        +P  + NL+ L SL    +
Sbjct: 184 -------------------------NL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS--- 239
             +  +  +I  +  LE +D          P           L L + +    +P     
Sbjct: 217 PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 240 -TQLQSFDVS 248
            TQL+  D+ 
Sbjct: 276 LTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 41/257 (15%), Positives = 78/257 (30%), Gaps = 51/257 (19%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
              L+ L  + +    L  ++  +++    LE+L +  N     +P  I    +R+  L 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELS 156

Query: 61  LRSNKFHGPLPTRLCDLPF---------LQILDIADTNLSGAIPNWINNLTGMVT----S 107
           +R+      LP  L              LQ L +  T +  ++P  I NL  + +    +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIP 165
              +        L                         I +L     +D+         P
Sbjct: 216 SPLSA-------LG----------------------PAIHHLPKLEELDLRGCTALRNYP 246

Query: 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL 225
                   L  L     S    +P  I  +T LE +D         +P  ++ L  +  +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 226 NLSNN---NLTGKIPSS 239
            +  +    L    P +
Sbjct: 307 LVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 58  VLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
            L  + +    P    L         D    + +    N  NN      +    ++    
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRALKA---- 70

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSL 177
               ++                          V  +++       + P +   L  L  +
Sbjct: 71  TADLLEDAT-------------------QPGRVA-LELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
                     +P+++     LE++  + N L   +P S++SL     L++       ++P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 238 SS 239
             
Sbjct: 168 EP 169

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 10/130 (7%), Positives = 38/130 (29%), Gaps = 30/130 (23%)

Query: 151 RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT-------------------RRIPES 191
             +    +         ++  +  ++ + +                        +   + 
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 192 IGVMTS--LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSF 245
           +   T     +++  +  L  + P+    L+   H+ +    L  ++P +      L++ 
Sbjct: 75  LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 246 DVSSFAGNDL 255
            ++    N L
Sbjct: 133 TLA---RNPL 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 39/258 (15%), Positives = 91/258 (35%), Gaps = 58/258 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILV--SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
            +L +L  L L  + +         L+N + L+SL++  NE +            ++ +L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELL 405

Query: 60  ILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
            L   +       +   +L  L++L+++ + L  +     + L                 
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---------------- 449

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV---TNLKALH 175
                                         L + +++  N+F      +      L  L 
Sbjct: 450 -----------------------------AL-QHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
            L  S+   +     +   +  +  +D S N+L+    E++S L    +LNL++N+++  
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISII 538

Query: 236 IPSS----TQLQSFDVSS 249
           +PS     +Q ++ ++  
Sbjct: 539 LPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 9e-19
 Identities = 45/248 (18%), Positives = 78/248 (31%), Gaps = 34/248 (13%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  L++L  L L  NK      +S  N  +L  L +  N     + T   E    +  L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 61  LRSNKFH--GPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSV 114
           L  +          +L +L  LQ L+++                 +              
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
            Q                              L+L++++++S +            L AL
Sbjct: 417 AQSPFQN-------------------------LHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 175 HSLNFSYNSFTRRIPESIGV---MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
             LN   N F +   +       +  LE +  S   LS     + +SL   NH++LS+N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 232 LTGKIPSS 239
           LT     +
Sbjct: 512 LTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 44/232 (18%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L+ L  L L  N+       + K C  LE LD+              +    + VL L 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            +            LP LQ L++   +         N+L                     
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------------- 474

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                   L  + ++ +S  + S       T+LK ++ ++ S+N
Sbjct: 475 ------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
             T    E++  +  +  ++ ++N +S  +P  +  L+    +NL  N L  
Sbjct: 511 RLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 47/254 (18%), Positives = 81/254 (31%), Gaps = 54/254 (21%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
              S+  + L K+        +    + L+ LD+        +P+ +    S +  L+L 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLV-GLSTLKKLVLS 309

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           +NKF         + P L  L I             N     + +               
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKG-----------NTKRLELGTGCLEN---------- 348

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN--FSGKIPLEVTNLKALHSLNFS 180
                                   L  +R +D+S ++   S    L++ NL  L SLN S
Sbjct: 349 ------------------------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFSNHLNLSNNNLTGKIPSS 239
           YN       E+      LE +D +  +L  +  +S   +L     LNLS++ L       
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 240 ----TQLQSFDVSS 249
                 LQ  ++  
Sbjct: 445 FDGLPALQHLNLQG 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 42/259 (16%), Positives = 81/259 (31%), Gaps = 59/259 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              + L  L L    LS ++   L   +TL+ L +  N+F  N+       F  +  L +
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSI 332

Query: 62  RSNKFHGPLPTR-LCDLPFLQILDIADTNL--SGAIPNWINNLTGMVTSCSFTRSVQQYL 118
           + N     L T  L +L  L+ LD++  ++  S      + NL+                
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS---------------- 376

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
                                        +L + +++S N               L  L+
Sbjct: 377 -----------------------------HL-QSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 179 FSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
            ++     +  +S    +  L+ ++ S + L     +    L    HLNL  N+      
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 238 SS-------TQLQSFDVSS 249
                     +L+   +S 
Sbjct: 467 QKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 47/262 (17%), Positives = 90/262 (34%), Gaps = 16/262 (6%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGE-RFSRMVVLI 60
            +  +L  L LG N +S   L        L+ LD   N         +   + +  + L 
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT-GMVTSCSFTRSVQQYLP 119
           L  N   G +     D    Q L+   T     I   + N T   +   +F     + + 
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 120 LPIDVGVILVEKASVVSKG---EMVDYEDILNL--VRMIDISRNNFSGKIPLEVTNLKAL 174
             +  G+  +   S+  +      +          ++ +D++  + S ++P  +  L  L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

Query: 175 HSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLT 233
             L  S N F      S     SL  +    N    E+    + +L     L+LS++++ 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 234 GKIPSS------TQLQSFDVSS 249
                +      + LQS ++S 
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSY 385

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 37/262 (14%), Positives = 77/262 (29%), Gaps = 43/262 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   L  L L  N L      +L     L+ L   +          +      +  L L
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYL 136

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL- 120
            SN        +      L++LD  +  +       +++L          ++    L L 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ---------QATNLSLNLN 187

Query: 121 -----PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN--LKA 173
                 I+ G                       + + ++         I   + N  +++
Sbjct: 188 GNDIAGIEPGAFD------------------SAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 174 LHSLNFSYNSFTRRIPESIGVM--TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
           L    F         P     +   S+ESI+   +        +    +    L+L+  +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 232 LTGKIPSS----TQLQSFDVSS 249
           L+ ++PS     + L+   +S+
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 53/257 (20%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
             S   L    N L      +      L  LD+   +              R+  L+L +
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTA 90

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           N       T L     L+ L    T +S      ++N                       
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK--------------------- 129

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183
                                    L   + +  N+ S     +    + L  L+F  N+
Sbjct: 130 ------------------------TL-ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 184 FTRRIPESIGVMTSLE--SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-- 239
                 E +  +      S++ + N ++  I            LN         I     
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 240 -TQLQSFDVSSFAGNDL 255
            + +QS  + +F   D 
Sbjct: 224 NSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 36/260 (13%), Positives = 80/260 (30%), Gaps = 38/260 (14%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L +L +L L + ++      + ++   L++L +  N  +    T +      +  L  
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFF 112

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSVQQY 117
                       L +   L+ L +   ++S            +      + +        
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH------ 166

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSL 177
                            +SK +M   +   NL   ++++ N+ +G I     +     SL
Sbjct: 167 ----------------YLSKEDMSSLQQATNLS--LNLNGNDIAG-IEPGAFDSAVFQSL 207

Query: 178 NFSYNSFTRRIPESIG--VMTSLESIDFSTNQLSGEIPESMSSLTFSN--HLNLSNNNLT 233
           NF        I + +    + SL    F         P     L   +   +NL  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 234 GKIPSS----TQLQSFDVSS 249
               ++    + LQ  D+++
Sbjct: 268 NISSNTFHCFSGLQELDLTA 287

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 36/235 (15%), Positives = 60/235 (25%), Gaps = 49/235 (20%)

Query: 29  TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88
            + E L+   N     I      R   +  L L   + +            L  L +   
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 89  NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN 148
            L       ++                                                 
Sbjct: 92  PLIFMAETALSGPK---------------------------------------------A 106

Query: 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL 208
           L + +   +   S    + + N K L SL    N  +            L+ +DF  N +
Sbjct: 107 L-KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 209 SGEIPESMSSLTFSNH--LNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIP 261
                E MSSL  + +  LNL+ N++ G  P +     F   +F G         
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204
            + N    ++ S N          + L  L  L+ +         ++      L+++  +
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSS 249
            N L      ++S      HL      ++            L+S  + S
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 24/197 (12%), Positives = 42/197 (21%), Gaps = 53/197 (26%)

Query: 43  GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT 102
           G +P            L    N       T    L  L  LD+    +     +   +  
Sbjct: 29  GTLPNST-------ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 103 GMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
                                                         L   + ++ N    
Sbjct: 82  ---------------------------------------------RL-DTLVLTANPLIF 95

Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222
                ++  KAL  L F     +      +    +LES+   +N +S             
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 223 NHLNLSNNNLTGKIPSS 239
             L+  NN +       
Sbjct: 156 KVLDFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 23/186 (12%), Positives = 52/186 (27%), Gaps = 49/186 (26%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIG--ERFSRMVVL 59
            +L  L  L L  + L +           L+ L++  N F           +   R+ +L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 60  ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP 119
           +L               L  +  +D++   L+ +    +++L G+               
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-------------- 527

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                            ++++ N+ S  +P  +  L    ++N 
Sbjct: 528 ---------------------------------LNLASNHISIILPSLLPILSQQRTINL 554

Query: 180 SYNSFT 185
             N   
Sbjct: 555 RQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +L  L  L L    LS     +  +   +  +D+  N    +    +     + + L L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH--LKGIYLNL 530

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSG 92
            SN     LP+ L  L   + +++    L  
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 41/256 (16%), Positives = 71/256 (27%), Gaps = 56/256 (21%)

Query: 2   GSLTSLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
            +L SL +L L +N LS       S     +L  LD+  N  +  +          +  L
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG-LEELQHL 404

Query: 60  ILRSNKFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
             + +             L  L  LDI+ TN           LT                
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------------- 448

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSL 177
                                        +L   + ++ N+F       V  N   L  L
Sbjct: 449 -----------------------------SL-NTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
           + S     +        +  L+ ++ S N L        + L   + L+ S N +     
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 238 SS----TQLQSFDVSS 249
                   L  F++++
Sbjct: 539 ILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 46/231 (19%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
              SL  L L  N   + +  +      L+ LD   +               +++ L + 
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
                         L  L  L +A            N+      S  F            
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAG-----------NSFKDNTLSNVFAN---------- 471

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                      +  +D+S+             L  L  LN S+N
Sbjct: 472 ------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           +           + SL ++D S N++                 NL+NN++ 
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 42/260 (16%), Positives = 71/260 (27%), Gaps = 55/260 (21%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
           +S   + L  N L +    S  N + L+ LD+   E               +  LIL  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGN 90

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
                 P     L  L+ L   +T L+      I  L                       
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI---------------------- 128

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG-KIPLEVTNLKALHSLNFSYNS 183
                                   L + ++++ N     K+P   +NL  L  ++ SYN 
Sbjct: 129 -----------------------TL-KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 184 FTRRIPESIGVMT----SLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
                   +  +        S+D S N +     ++   +     L L  N  +  I  +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKT 223

Query: 240 T--QLQSFDVSSFAGNDLCG 257
               L    V      +   
Sbjct: 224 CLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 29/256 (11%)

Query: 2   GSLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRM---- 56
           G L +L  L +  N + S  +     N T L  +D+  N     I     +         
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVN 183

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQ 115
           + L +  N     +  +      L  L +     S  I    + NL G+          +
Sbjct: 184 LSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH 175
               L             +     M    D+        ++  N      ++   L  + 
Sbjct: 243 DERNL------------EIFEPSIMEGLCDVTID--EFRLTYTNDFSDDIVKFHCLANVS 288

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
           +++ +  S      E +      +S+     QL       +  L     L L+ N  +  
Sbjct: 289 AMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK---SLTLTMNKGSIS 343

Query: 236 IPSS--TQLQSFDVSS 249
                   L   D+S 
Sbjct: 344 FKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 42/271 (15%), Positives = 74/271 (27%), Gaps = 37/271 (13%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L  L  L L  N +      S    T+LE+L   E +        IG+    +  L +
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNV 135

Query: 62  RSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             N  H   LP    +L  L  +D++   +     N +  L            V   L +
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN-------PQVNLSLDM 188

Query: 121 ---PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHS 176
              PI            +           + L   + +  N  S  I      NL  LH 
Sbjct: 189 SLNPI----------DFIQDQAFQG----IKL-HELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 177 LNFSYNSFTRRIPESIG--------VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228
                  F       I            +++    +      +       L   + ++L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 229 NNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259
             ++   +    +   +   S     L   P
Sbjct: 294 GVSIK-YLEDVPKHFKWQSLSIIRCQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 41/257 (15%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L ++  + L    +    L  +      +SL +   +               +  L L
Sbjct: 282 HCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTL 335

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             NK           LP L  LD     LS    N ++       S   T S++      
Sbjct: 336 TMNKGSISFK--KVALPSLSYLD-----LSR---NALSFSGCCSYSDLGTNSLRH----- 380

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFS 180
           +D+        S    G        L  ++ +D   +            +L+ L  L+ S
Sbjct: 381 LDLSFNGAIIMSANFMG--------LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES----MSSLTFSNHLNLSNNNLTGKI 236
           Y +           +TSL ++  + N        +     ++LT    L+LS   L    
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT---FLDLSKCQLEQIS 489

Query: 237 PSS----TQLQSFDVSS 249
                   +LQ  ++S 
Sbjct: 490 WGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 33/235 (14%), Positives = 59/235 (25%), Gaps = 53/235 (22%)

Query: 2   GSLTSLVWLRLGKNKLS-VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
             L  L  L    + L  V    +  +   L  LD+            I    + +  L 
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLK 454

Query: 61  LRSNKFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP 119
           +  N F     +    +   L  LD++   L        + L                  
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH----------------- 497

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                        L +++++S NN           L +L +L+ 
Sbjct: 498 ----------------------------RL-QLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
           S+N              SL   + + N ++  I E      F   +      L  
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQK---FLQWVKEQKQFLVN 579

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 36/256 (14%), Positives = 68/256 (26%), Gaps = 56/256 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            + + L WL L + ++      +      L +L +  N      P       + +  L+ 
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVA 111

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
              K        +  L  L+ L++A            N +        F+          
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAH-----------NFIHSCKLPAYFSN--------- 151

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH----SL 177
                                    L  +  +D+S N        ++  L+       SL
Sbjct: 152 -------------------------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTFSNHLNLSNNNLTGKI 236
           + S N     I +       L  +    N  S  I +  + +L   +   L         
Sbjct: 187 DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD-- 243

Query: 237 PSSTQLQSFDVSSFAG 252
                L+ F+ S   G
Sbjct: 244 --ERNLEIFEPSIMEG 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 41/261 (15%), Positives = 73/261 (27%), Gaps = 55/261 (21%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
            ++   RL       D +V       + ++ +               +  +   L +   
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRC 317

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI----------NNLTGMVTSCSFTRSV 114
           +     PT   DLPFL+ L +     S +                N       CS++   
Sbjct: 318 QLKQ-FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
              L                                R +D+S N     +      L+ L
Sbjct: 375 TNSL--------------------------------RHLDLSFNGAII-MSANFMGLEEL 401

Query: 175 HSLNFSYNSFTRRIPES-IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
             L+F +++  R    S    +  L  +D S      +       LT  N L ++ N+  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 234 GKIPSS-----TQLQSFDVSS 249
               S+     T L   D+S 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 31/241 (12%), Positives = 65/241 (26%), Gaps = 52/241 (21%)

Query: 29  TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88
           ++ +++D+  N     + ++    FS +  L L   +           L  L  L +   
Sbjct: 32  SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 89  NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN 148
            +    P   + LT                                             +
Sbjct: 91  PIQSFSPGSFSGLT---------------------------------------------S 105

Query: 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQ 207
           L   +       +      +  L  L  LN ++N     ++P     +T+L  +D S N 
Sbjct: 106 L-ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 208 LSGEIPESMSSLTFSN----HLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKN 263
           +       +  L  +      L++S N +      + Q       +  GN      +   
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 264 C 264
            
Sbjct: 225 L 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 43/262 (16%), Positives = 77/262 (29%), Gaps = 45/262 (17%)

Query: 3   SLTSLVWLRLGKNKLSVDIL-VSLKNCTTLESLDVGENEFVGNIPTWI-------GERFS 54
               L  L L  N  S +I+   L+N   L    +   EF       I       G    
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 55  RMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSV 114
            +    L           +   L  +  + +A  ++      ++ ++       S +   
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-----KYLEDVPKHFKWQSLSIIR 316

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
            Q    P                       D+  L + + ++ N  S  I  +   L +L
Sbjct: 317 CQLKQFPT---------------------LDLPFL-KSLTLTMNKGS--ISFKKVALPSL 352

Query: 175 HSLNFSYNSFTRRIPES--IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
             L+ S N+ +     S       SL  +D S N     +  +   L    HL+  ++ L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTL 411

Query: 233 TGKIPSS-----TQLQSFDVSS 249
                 S      +L   D+S 
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISY 433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           +DI +  + ID+S N          +N   L  L+ S         ++   +  L ++  
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAP 259
           + N +    P S S LT   +L      L             L+  +V+    N +    
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA---HNFIHSCK 144

Query: 260 IPK 262
           +P 
Sbjct: 145 LPA 147

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 4e-17
 Identities = 49/254 (19%), Positives = 96/254 (37%), Gaps = 46/254 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +LT+L  L L ++ +S   +  L N T + SL++G N  + ++   +    + +  L +
Sbjct: 107 QNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSN-MTGLNYLTV 162

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             +K     P  + +L  L  L +    +    P  + +LT +            Y    
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL-----------HYFTA- 206

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                            ++ D   + N+     + I  N  +   PL   NL  L  L  
Sbjct: 207 --------------YVNQITDITPVANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEI 250

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
             N  +     ++  +T L+ ++  +NQ+S      +++L+  N L L+NN L  +    
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 240 ----TQLQSFDVSS 249
               T L +  +S 
Sbjct: 307 IGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 54/252 (21%), Positives = 91/252 (36%), Gaps = 42/252 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +LT +  L LG N    D+   L N T L  L V E++     P       + +  L L
Sbjct: 129 ANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPI---ANLTDLYSLSL 184

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N+     P  L  L  L         ++   P  + N+T +             L + 
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRL-----------NSLKI- 228

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                            ++ D   + NL     ++I  N  S    ++  +L  L  LN 
Sbjct: 229 --------------GNNKITDLSPLANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNV 272

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
             N  +      +  ++ L S+  + NQL  E  E +  LT    L LS N++T   P +
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330

Query: 240 --TQLQSFDVSS 249
             +++ S D ++
Sbjct: 331 SLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 43/235 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            ++T L +L + ++K+    +  + N T L SL +  N+     P  +    + +     
Sbjct: 152 SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LAS-LTSLHYFTA 206

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N+     P  + ++  L  L I +  ++   P  + NL+ +            +L + 
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL-----------TWLEI- 250

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                            ++ D   + +L   +M+++  N  S    L   NL  L+SL  
Sbjct: 251 --------------GTNQISDINAVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFL 294

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLT 233
           + N       E IG +T+L ++  S N ++   P  S+S +      + +N  + 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD---SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 64/251 (25%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +L  L  L +G NK++   + +L+N T L  L + E+      P       ++M  L L
Sbjct: 85  SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPL---ANLTKMYSLNL 139

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +N       + L ++  L  L + ++ +    P  I NLT                   
Sbjct: 140 GANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT------------------- 177

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     +L   + ++ N      PL   +L +LH      
Sbjct: 178 --------------------------DL-YSLSLNYNQIEDISPLA--SLTSLHYFTAYV 208

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTG--KIPS 238
           N  T      +  MT L S+    N+++   P  ++S LT    L +  N ++    +  
Sbjct: 209 NQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLSQLT---WLEIGTNQISDINAVKD 263

Query: 239 STQLQSFDVSS 249
            T+L+  +V S
Sbjct: 264 LTKLKMLNVGS 274

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 49/254 (19%), Positives = 96/254 (37%), Gaps = 48/254 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L S+  L +   K++   +  ++  T LE L++  N+     P        ++  L +
Sbjct: 41  EELESITKLVVAGEKVA--SIQGIEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYI 95

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLPL 120
            +NK        L +L  L+ L + + N+S   P  + NLT M + +     ++      
Sbjct: 96  GTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS----- 146

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLN 178
                                D   + N+     + ++ +      P+   NL  L+SL+
Sbjct: 147 ---------------------DLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLS 183

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIP 237
            +YN         +  +TSL       NQ++   P  +M+ L     L + NN +T   P
Sbjct: 184 LNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLN---SLKIGNNKITDLSP 238

Query: 238 SS--TQLQSFDVSS 249
            +  +QL   ++ +
Sbjct: 239 LANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 46/252 (18%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L   +   L K  ++   +V+ +   ++  L V   + V +I     E  + +  L L 
Sbjct: 20  DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK-VASIQGI--EYLTNLEYLNLN 74

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N+     P  L +L  L  L I    ++    + + NLT +           + L L  
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL-----------RELYL-- 117

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                        ++  + D   + NL     +++  N+    +   ++N+  L+ L  +
Sbjct: 118 -------------NEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT 163

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIPSS 239
            +         I  +T L S+  + NQ+    P  S++SL    +     N +T   P +
Sbjct: 164 ESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASLTSLH---YFTAYVNQITDITPVA 218

Query: 240 --TQLQSFDVSS 249
             T+L S  + +
Sbjct: 219 NMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 142 DYEDILNL--VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE 199
                 +L       + + + +  +  E   L+++  L  +         + I  +T+LE
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 200 SIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIPSSTQLQS 244
            ++ + NQ++   P  ++  LT   +L +  N +T  I +   L +
Sbjct: 70  YLNLNGNQITDISPLSNLVKLT---NLYIGTNKIT-DISALQNLTN 111

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 55/185 (29%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            ++T L  L++G NK++   L  L N + L  L++G N+ + +I     +  +++ +L +
Sbjct: 218 ANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQ-ISDINAV--KDLTKLKMLNV 272

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            SN+        L +L  L  L + +  L       I  LT                   
Sbjct: 273 GSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLT------------------- 311

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     NL   + +S+N+ +   PL   +L  + S +F+ 
Sbjct: 312 --------------------------NL-TTLFLSQNHITDIRPLA--SLSKMDSADFAN 342

Query: 182 NSFTR 186
               +
Sbjct: 343 QVIKK 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 59/249 (23%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
               L  L +  N+L+  + V       L             +P       S +  L + 
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALP----SGLCKLWIF 129

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLP 121
            N+    LP      P LQ L ++D  L+ ++P   + L  +   +   T      LP  
Sbjct: 130 GNQLTS-LPV---LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS-----LP-- 177

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                      L   + +S N  +  +P   + L  L + N   
Sbjct: 178 ----------------------MLPSGLQE-LSVSDNQLA-SLPTLPSELYKLWAYN--- 210

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-T 240
           N  T  +P        L+ +  S N+L+  +P   S L     L +S N LT  +P   +
Sbjct: 211 NRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELK---ELMVSGNRLT-SLPMLPS 261

Query: 241 QLQSFDVSS 249
            L S  V  
Sbjct: 262 GLLSLSVYR 270

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 6e-13
 Identities = 45/260 (17%), Positives = 80/260 (30%), Gaps = 68/260 (26%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
              L  L         L           + L  L +  N+   ++P         +  L 
Sbjct: 100 PPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQL-TSLPVLPPG----LQELS 147

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLP 119
           +  N+    LP    +   L  L   +  L+ ++P   + L  + V+           LP
Sbjct: 148 VSDNQLAS-LPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSVSDNQLAS-----LP 197

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                        L ++     N  +  +P   + LK    L  
Sbjct: 198 ------------------------TLPSELYKL-WAYNNRLT-SLPALPSGLK---ELIV 228

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           S N  T  +P        L+ +  S N+L+  +P   S L     L++  N LT ++P S
Sbjct: 229 SGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPES 279

Query: 240 ----TQLQSFDVSSFAGNDL 255
               +   + ++    GN L
Sbjct: 280 LIHLSSETTVNLE---GNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 46/289 (15%), Positives = 93/289 (32%), Gaps = 48/289 (16%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
               L  L +  N+L+  +         L  L    N+      T +    S +  L + 
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL-----TSLPMLPSGLQELSVS 189

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N+    LPT   +L  L   +    N   ++P   + L  ++ S +   S      LP 
Sbjct: 190 DNQLAS-LPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSGNRLTS------LP- 237

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                     L + + +S N  +  +P+  + L    SL+   N
Sbjct: 238 ---------------------VLPSEL-KELMVSGNRLT-SLPMLPSGLL---SLSVYRN 271

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL 242
             TR +PES+  ++S  +++   N LS    +++  +T +   +           S+ + 
Sbjct: 272 QLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 243 QSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSA 291
                 + A   +          +   +F  E+  +        L  + 
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           + +   +  + I  NN +  +P     L+   +L  S N  T  +P     +  L     
Sbjct: 57  DCLPAHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLTS-LPVLPPGLLELSIFSN 111

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS 249
               L    P   S L     L +  N LT        LQ   VS 
Sbjct: 112 PLTHL----PALPSGLC---KLWIFGNQLTSLPVLPPGLQELSVSD 150

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 27/123 (21%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT----------------RR 187
                L R +++S N  +  +P+    L  L   +                         
Sbjct: 78  ALPPEL-RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135

Query: 188 IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFD 246
           +P        L+ +  S NQL+  +P   S L     L   NN LT  +P   + LQ   
Sbjct: 136 LPVLPP---GLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELS 187

Query: 247 VSS 249
           VS 
Sbjct: 188 VSD 190

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 151 RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG 210
            ++++  +  +  +P  +     + +L    N+ T  +P        L +++ S NQL+ 
Sbjct: 43  AVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS-LPALPP---ELRTLEVSGNQLT- 94

Query: 211 EIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259
            +P     L   +  +    +L       + L    +    GN L   P
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALP---SGLCKLWIF---GNQLTSLP 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 48/253 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +LT LV + +  N+++   +  L N T L  L +  N+     P    +  + +  L L
Sbjct: 87  KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLEL 141

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            SN         L  L  LQ L      ++   P  + NLT +           + L + 
Sbjct: 142 SSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTL-----------ERLDI- 184

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                         S  ++ D   +  L     +  + N  S   PL    L  L  L+ 
Sbjct: 185 --------------SSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSL 228

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIPS 238
           + N        ++  +T+L  +D + NQ+S   P   ++ LT    L L  N ++   P 
Sbjct: 229 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT---ELKLGANQISNISPL 283

Query: 239 S--TQLQSFDVSS 249
           +  T L + +++ 
Sbjct: 284 AGLTALTNLELNE 296

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 48/251 (19%), Positives = 78/251 (31%), Gaps = 65/251 (25%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +LT+L  L +  NK+S   +  L   T LESL    N+     P       + +  L L
Sbjct: 174 ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSL 228

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N+        L  L  L  LD+A+  +S   P  ++ LT +                 
Sbjct: 229 NGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTE--------------- 269

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                          + +  N  S   PL    L AL +L  + 
Sbjct: 270 -------------------------------LKLGANQISNISPLA--GLTALTNLELNE 296

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTG--KIPS 238
           N         I  + +L  +    N +S   P  S++ L     L   NN ++    + +
Sbjct: 297 NQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR---LFFYNNKVSDVSSLAN 351

Query: 239 STQLQSFDVSS 249
            T +       
Sbjct: 352 LTNINWLSAGH 362

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 50/244 (20%), Positives = 84/244 (34%), Gaps = 63/244 (25%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           G LT+L  L L  N+L    + +L + T L  LD+  N+     P       +++  L L
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKL 272

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +N+     P  L  L  L  L++ +  L    P  I+NL                    
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK------------------- 309

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     NL   + +  NN S   P+   +L  L  L F  
Sbjct: 310 --------------------------NL-TYLTLYFNNISDISPVS--SLTKLQRLFFYN 340

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIPSST 240
           N  +     S+  +T++  +    NQ+S   P  +++ +T    L L++   T    +  
Sbjct: 341 NKVS--DVSSLANLTNINWLSAGHNQISDLTPLANLTRIT---QLGLNDQAWTNAPVNYK 395

Query: 241 QLQS 244
              S
Sbjct: 396 ANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 47/252 (18%), Positives = 95/252 (37%), Gaps = 46/252 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L  +  L+  +  +    +  ++    L  ++   N+     P    +  +++V +++
Sbjct: 43  TDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPL---KNLTKLVDILM 97

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +N+     P  L +L  L  L + +  ++   P  + NLT +             L L 
Sbjct: 98  NNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL-----------NRLEL- 141

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS-RNNFSGKIPLEVTNLKALHSLNFS 180
                         S   + D   +  L  +  +S  N  +   PL   NL  L  L+ S
Sbjct: 142 --------------SSNTISDISALSGLTSLQQLSFGNQVTDLKPLA--NLTTLERLDIS 185

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTGKIPSS 239
            N  +      +  +T+LES+  + NQ+S   P   +++L     L+L+ N L      +
Sbjct: 186 SNKVS--DISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKDIGTLA 240

Query: 240 --TQLQSFDVSS 249
             T L   D+++
Sbjct: 241 SLTNLTDLDLAN 252

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 46/251 (18%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L   +   LGK  ++    VS  +   + +L       + +I     E  + +  +   
Sbjct: 22  ALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLG-IKSIDGV--EYLNNLTQINFS 76

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           +N+     P  L +L  L  + + +  ++   P  + NLT +             L L  
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL-----------TGLTL-- 119

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                           ++ D + + NL     +++S N  S    L    L +L  L+F 
Sbjct: 120 -------------FNNQITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFG 164

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239
                    + +  +T+LE +D S+N++S      ++ LT    L  +NN ++   P   
Sbjct: 165 NQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI 219

Query: 240 -TQLQSFDVSS 249
            T L    ++ 
Sbjct: 220 LTNLDELSLNG 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 39/235 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SLT+L  L L  N++S   L  L   T L  L +G N+     P       + +  L L
Sbjct: 240 ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPL---AGLTALTNLEL 294

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLPL 120
             N+     P  + +L  L  L +   N+S   P  +++LT +                 
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN--------- 341

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                           K   V     L  +  +    N  S   PL   NL  +  L  +
Sbjct: 342 ----------------KVSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLN 383

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
             ++T         ++   ++   T  L    P ++S        +++ N  +  
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 56/212 (26%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +L +L +L L  N +S   +  + + T L+ L    N+   +  + +    + +  L  
Sbjct: 306 SNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV--SDVSSLAN-LTNINWLSA 360

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N+     P  L +L  +  L + D   + A  N+  N++                   
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS------------------- 399

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                   I N V+ +  +        P  +++  +    + ++
Sbjct: 400 ------------------------IPNTVKNVTGALI-----APATISDGGSYTEPDITW 430

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIP 213
           N  +    E     +   +I   T   SG + 
Sbjct: 431 NLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 54/250 (21%), Positives = 87/250 (34%), Gaps = 55/250 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
               SL ++  G N+L    L  L+N   L ++    N         + +    +  ++ 
Sbjct: 170 DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVA 222

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPL 120
            +N     LP  L +LPFL  +   +  L   +P+   +L  + V     T        L
Sbjct: 223 GNNILEE-LPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD-------L 272

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
           P                      E   +L   +D+S N FS  +     NL     LN S
Sbjct: 273 P----------------------ELPQSL-TFLDVSENIFS-GLSELPPNLY---YLNAS 305

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239
            N     + +      SLE ++ S N+L  E+P     L     L  S N+L  ++P   
Sbjct: 306 SNEIRS-LCDL---PPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELP 356

Query: 240 TQLQSFDVSS 249
             L+   V  
Sbjct: 357 QNLKQLHVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 46/256 (17%), Positives = 83/256 (32%), Gaps = 55/256 (21%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
               L  L    N L+ ++    ++  +L   +          P         +  L + 
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVS 139

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLP 121
           +N+    LP  L +  FL+I+D+ + +L   +P+   +L  +   +          LP  
Sbjct: 140 NNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLE-----ELP-- 189

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                  ++ NL     I    N+   K+P    +L+   S+  
Sbjct: 190 -----------------------ELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVA 222

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
             N         +  +  L +I    N L   +P+   SL     LN+ +N LT      
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLTDLPELP 276

Query: 240 TQLQSFDVSSFAGNDL 255
             L   DVS    + L
Sbjct: 277 QSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 53/249 (21%), Positives = 90/249 (36%), Gaps = 35/249 (14%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           S T L       + L+ ++ V  +N  +        +E+  N P   GE          R
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE---------QR 58

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
                     R C       L++ +  LS ++P    +L  +V SC+          LP 
Sbjct: 59  EMAV---SRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLTE------LPE 108

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
               +        +   +    D+  L+  + +S N    K+P E+ N   L  ++   N
Sbjct: 109 LPQSLKSLLVDNNNLKAL---SDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNN 163

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPE--SMSSLTFSNHLNLSNNNLTGKIPSST 240
           S  + +P+      SLE I    NQL  E+PE  ++  LT    +   NN+L        
Sbjct: 164 SLKK-LPDLPP---SLEFIAAGNNQLE-ELPELQNLPFLT---AIYADNNSLKKLPDLPL 215

Query: 241 QLQSFDVSS 249
            L+S    +
Sbjct: 216 SLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 55/249 (22%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
              L +L +  N+L    L  L+N + L+ +DV  N     +P         +  +   +
Sbjct: 130 PPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFIAAGN 182

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLPI 122
           N+    LP  L +LPFL  +   + +L   +P+   +L  +   +            LP 
Sbjct: 183 NQLEE-LPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEE-------LP- 231

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRM--IDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                 ++ NL  +  I    N     +P    +L+   +LN  
Sbjct: 232 ----------------------ELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVR 265

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
            N  T  +PE      SL  +D S N  S  + E   +L    +LN S+N +        
Sbjct: 266 DNYLTD-LPELPQ---SLTFLDVSENIFS-GLSELPPNLY---YLNASSNEIRSLCDLPP 317

Query: 241 QLQSFDVSS 249
            L+  +VS+
Sbjct: 318 SLEELNVSN 326

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 56/249 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
               SL  +  G N L    L  L+N   L ++    N     +P         +  L +
Sbjct: 212 DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNV 264

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
           R N     LP     L FL + +   + LS   PN +  L    +S            L 
Sbjct: 265 RDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN-LYYLN--ASSNEIRS-------LC 313

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                 +   +L   +++S N    ++P     L+    L  S+
Sbjct: 314 ----------------------DLPPSL-EELNVSNNKLI-ELPALPPRLE---RLIASF 346

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-T 240
           N     +PE      +L+ +    N L  E P+   S+      +L  N+   ++P    
Sbjct: 347 NHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQ 396

Query: 241 QLQSFDVSS 249
            L+   V +
Sbjct: 397 NLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 45/249 (18%), Positives = 80/249 (32%), Gaps = 55/249 (22%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           + +L  L  +    N L   +     +   LES+  G N     +P    +    +  + 
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPEL--QNLPFLTTIY 243

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             +N     LP     L  L + D    N    +P    +LT +  S +    + +  P 
Sbjct: 244 ADNNLLKT-LPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDVSENIFSGLSELPP- 297

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                      NL   ++ S N     +     +L+    LN S
Sbjct: 298 ---------------------------NL-YYLNASSNEIR-SLCDLPPSLE---ELNVS 325

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239
            N     +P        LE +  S N L+ E+PE   +L     L++  N L  + P   
Sbjct: 326 NNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIP 376

Query: 240 TQLQSFDVS 248
             ++   ++
Sbjct: 377 ESVEDLRMN 385

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 141 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIG------- 193
           ++  ++ N      +  ++   ++P+E  N+K+      +++ + R  P   G       
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 194 ------VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFD 246
                 +      ++ +   LS  +PE    L     L  S N+LT ++P     L+S  
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117

Query: 247 VSSFAGNDLCGAP 259
           V +     L   P
Sbjct: 118 VDNNNLKALSDLP 130

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 153 IDISRNNFSGKIPLEVTNL-------------KALHSLNFSYNSFTRRIPESIGVMTSLE 199
              + + +    P                   +  H L  +    +  +PE       LE
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPP---HLE 94

Query: 200 SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259
           S+  S N L+ E+PE   SL      N +   L+   P    L+   VS    N L   P
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL---LEYLGVS---NNQLEKLP 147

Query: 260 IPKNCT 265
             +N +
Sbjct: 148 ELQNSS 153

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 33/244 (13%), Positives = 70/244 (28%), Gaps = 58/244 (23%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIP------------TWIG 50
              SL  L +  N L+ D+    ++ T L+  +   +      P              + 
Sbjct: 255 LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313

Query: 51  ERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGM-VTSCS 109
           +    +  L + +NK    LP     L   + L  +  +L+  +P    NL  + V    
Sbjct: 314 DLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNLKQLHVEYNP 368

Query: 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 169
                      P                              + D+  N+   ++P    
Sbjct: 369 LRE-------FPDIPE-------------------------SVEDLRMNSHLAEVPELPQ 396

Query: 170 NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229
           NLK    L+   N      P+      S+E +  ++ ++      +  +          +
Sbjct: 397 NLK---QLHVETNPLRE-FPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 230 NNLT 233
           ++  
Sbjct: 450 HHHH 453

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 58/260 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SL++L  L L  N +       L    ++E+L    N     +      R      + L
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC---SRGQGKKNIYL 127

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +NK              +Q LD+             N +  +  +              
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKL-----------NEIDTVNFAELAAS--------- 167

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     + +  +++  N     +  +      L +L+ S 
Sbjct: 168 -------------------------SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSS 200

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241
           N     +         +  I    N+L   I +++       H +L  N           
Sbjct: 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 242 LQSFDVSSFAGNDLCGAPIP 261
            ++  V + A   +      
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQ 278

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 69/254 (27%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           S  ++  L L  N LS      L   T LE L++  N     +     E  S +  L L 
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL---ESLSTLRTLDLN 88

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           +N         L   P ++ L  A+ N+S  +                            
Sbjct: 89  NNYV-----QELLVGPSIETLHAANNNIS-RVS--------------------------- 115

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                       + I ++ N  +    L+      +  L+   N
Sbjct: 116 ---------------------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 183 SFTR-RIPESIGVMTSLESIDFSTNQLSGEIPES--MSSLTFSNHLNLSNNNLTGKIPSS 239
                   E      +LE ++   N +  ++      + L     L+LS+N L   +   
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSSNKLA-FMGPE 209

Query: 240 ----TQLQSFDVSS 249
                 +    + +
Sbjct: 210 FQSAAGVTWISLRN 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTN 206
            N  ++  ++ ++    +     +   +  L+ S N  ++     +   T LE ++ S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 207 QLSGEIPE--SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS 249
            L  E  +  S+S+L     L+L+NN +  ++     +++   ++
Sbjct: 69  VLY-ETLDLESLSTLR---TLDLNNNYVQ-ELLVGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/203 (14%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 54  SRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRS 113
           +R  +  +  +     L +       ++ LD++   LS      +   T +         
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL--------- 60

Query: 114 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNL 171
             + L L               S   + +  D+ +L   R +D++ N        E+   
Sbjct: 61  --ELLNL---------------SSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVG 98

Query: 172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
            ++ +L+ + N+ +R +  S G     ++I  + N+++          +   +L+L  N 
Sbjct: 99  PSIETLHAANNNISR-VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 232 LT-----GKIPSSTQLQSFDVSS 249
           +          SS  L+  ++  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQY 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 170 NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229
           N         + +S  + +        +++ +D S N LS      ++  T    LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 230 NNLTGKIPSSTQLQS 244
           N L  +      L +
Sbjct: 68  NVLY-ETLDLESLST 81

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 49/297 (16%), Positives = 88/297 (29%), Gaps = 51/297 (17%)

Query: 3   SLTSLVWLRLGKNKLSVDILVS--LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            L  L  LRL    LS  +L     +N   L  LD+ +N+           + + +  + 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 61  LRSNKFHGPLPTRLCDL--PFLQILDIADTNLSGAIPNWI------------------NN 100
             SN+        L  L    L    +A  +L   +                       N
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 101 LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL----VRMIDIS 156
              +  + +F+ ++ +     + +   ++         +  D      L    VR +D+S
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 157 RNN--------FSGKIPLEV----------------TNLKALHSLNFSYNSFTRRIPESI 192
                      F     L+V                  L  L  LN SYN        + 
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 193 GVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS 249
             +  +  ID   N ++    ++   L     L+L +N LT  I     +    +S 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 44/260 (16%), Positives = 100/260 (38%), Gaps = 16/260 (6%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L  L  L L  NK++     +      L+ L++  N   G + +       ++  + L+
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQ 346

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N            L  LQ LD+ D  L+  I     ++  +  S +   ++ +   + +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFI-PSIPDIFLSGNKLVTLPK---INL 401

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT--NLKALHSLNFS 180
              +I + +  + +   +     + +L +++ +++N FS     + T     +L  L   
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFS-SCSGDQTPSENPSLEQLFLG 459

Query: 181 YNSFTRRIPESIGV-----MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
            N         +       ++ L+ +  + N L+   P   S LT    L+L++N LT  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-V 518

Query: 236 IPSSTQLQSFDVSSFAGNDL 255
           +  +    + ++   + N L
Sbjct: 519 LSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 47/271 (17%), Positives = 97/271 (35%), Gaps = 22/271 (8%)

Query: 2   GSLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIP--TWIGERFSRMVV 58
            +L +L  L L KN++ S+ +  S     +L+S+D   N+    +        +   +  
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSF 178

Query: 59  LILRSNKFHGPLPTRLCDLP------FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR 112
             L +N  +  +               L+ILD++    +  I    +N        + ++
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN--------AISK 230

Query: 113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 172
           S    L L   +        ++    +        + VR +D+S              LK
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 173 ALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
            L  LN +YN   +   E+   + +L+ ++ S N L      +   L    +++L  N++
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 233 TGKIPSS----TQLQSFDVSSFAGNDLCGAP 259
                 +     +LQ+ D+   A   +   P
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 53/335 (15%), Positives = 118/335 (35%), Gaps = 51/335 (15%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV--------------GNIPTW 48
            L  + ++ L KN +++    + K    L++LD+ +N                 GN    
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 49  IGERFSRMVVLILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSG----AIPNWINNLTG 103
           + +      ++ L  N+     +   L  +P LQIL +     S       P+   +L  
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 104 M-VTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
           + +       + +  L   +  G                     L+ ++++ ++ N  + 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEG---------------------LSHLQVLYLNHNYLNS 494

Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222
             P   ++L AL  L+ + N  T  +  +  +  +LE +D S NQL    P+   SL+  
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTV-LSHND-LPANLEILDISRNQLLAPNPDVFVSLS-- 550

Query: 223 NHLNLSNNNLTGKIPSST-----QLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGD 277
             L++++N    +   ST        +  ++    +  C  P   +     S+  +   +
Sbjct: 551 -VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDE 609

Query: 278 EDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRRW 312
           E+  +   +         +  F   +  +   R +
Sbjct: 610 EEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGF 644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 32/278 (11%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF-VGNIPTWIGERFSRMVVLIL 61
           +L +L  L LG +K+      + +    L  L +         +          +  L L
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 62  RSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG--------------MVT 106
             N+     L      L  L+ +D +   +     + +  L G                 
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 107 SCSFTRSVQQYLPLPIDV--------GVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 158
           S  + + +  +  + +++         V +    S            + + +       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 159 NFSGKIPLEVTNLK--ALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM 216
           N           L   ++  L+ S+             +  L+ ++ + N+++    E+ 
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 217 SSLTFSNHLNLSNNNLTGKIPSST-----QLQSFDVSS 249
             L     LNLS N L  ++ SS      ++   D+  
Sbjct: 311 YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQK 347

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 42/264 (15%), Positives = 68/264 (25%), Gaps = 59/264 (22%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L +   L L  N +      S      L+ L++G       I          + +L L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAI--PNWINNLTGMVTSCSFTRSVQQYLPLP 121
           +K +   P     L  L  L +    LS A+    +  NL                    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------------------- 123

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG-KIPLEVTNLKALHSLNFS 180
                                      L   +D+S+N      +      L +L S++FS
Sbjct: 124 --------------------------AL-TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 181 YNSFTRRIPESIGV--MTSLESIDFSTNQLSGEIPESMSSLTFS------NHLNLSNNNL 232
            N         +      +L     + N L   +                  L++S N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 233 TGKIPS--STQLQSFDVSSFAGND 254
           T  I    S  +      S     
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAH 240

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 151 RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG 210
           R+      N + ++P     L     L  S+N        S   +  L+ ++  +     
Sbjct: 7   RIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 211 EI-PESMSSLTFSNHLNLSNNNLTGKIPSST-----QLQSFDVSS 249
            I  E+  +L     L+L ++ +   +          L    +  
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYF 106

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRI-PESIGVMTSLESIDF 203
            +LN    + +S N            L+ L  L          I  E+   + +L  +D 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS------TQLQSFDVSS 249
            ++++    P++   L     L L    L+  +           L   D+S 
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSL-----KNCTTLESLDVGENEFVGNIPTWIGERFSRM 56
               SL  L LG+N L +     L     +  + L+ L +  N    ++P  +    + +
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTAL 506

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT 102
             L L SN+        L     L+ILDI+   L    P+   +L+
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLS 550

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 6e-13
 Identities = 34/258 (13%), Positives = 67/258 (25%), Gaps = 58/258 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SL++L  L L  N +       L    ++E+L    N    NI      R      + L
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN----NISRVSCSRGQGKKNIYL 127

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +NK              +Q LD+             N +  +  +              
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKL-----------NEIDTVNFAELAAS--------- 167

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     + +  +++  N     +  +      L +L+ S 
Sbjct: 168 -------------------------SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSS 200

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241
           N     +         +  I    N+L   I +++       H +L  N           
Sbjct: 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 242 LQSFDVSSFAGNDLCGAP 259
            ++  V + A   +    
Sbjct: 259 SKNQRVQTVAKQTVKKLT 276

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 47/268 (17%), Positives = 78/268 (29%), Gaps = 63/268 (23%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S  ++  L L  N LS      L   T LE L++  N              S +  L L
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLES--LSTLRTLDL 87

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT---------GMVTSCSFTR 112
            +N         L   P ++ L  A+ N+S    +                M+       
Sbjct: 88  NNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG-KIPLEVTNL 171
                                              + V+ +D+  N            + 
Sbjct: 143 ----------------------------------RSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
             L  LN  YN     +   +     L+++D S+N+L+  +     S      ++L NN 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 232 LTGKIPSS----TQLQSFDVSSFAGNDL 255
           L   I  +      L+ FD+    GN  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLR---GNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 31/241 (12%), Positives = 73/241 (30%), Gaps = 21/241 (8%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERF---SRMVV 58
            S  +L  L L  N +    +        L++LD+  N+       ++G  F   + +  
Sbjct: 166 ASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVTW 218

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLS-GAIPNWINNLTGMVTSCSFTRSVQQY 117
           + LR+NK    +   L     L+  D+       G + ++ +    + T    T      
Sbjct: 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS----RNNFSGKIPLEVTNLKA 173
                     L    +   +     + D L  ++  + +    + + + ++  E  N   
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
              ++     +   I +      +  +++     L     +   S     H  L      
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL-----DEQVSNGRRAHAELDGTLQQ 392

Query: 234 G 234
            
Sbjct: 393 A 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTN 206
            N  ++  ++ ++    +     +   +  L+ S N  ++     +   T LE ++ S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 207 QLSGEIPE--SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS 249
            L  E  +  S+S+L     L+L+NN +  ++     +++   ++
Sbjct: 69  VLY-ETLDLESLSTLR---TLDLNNNYVQ-ELLVGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 32/264 (12%), Positives = 76/264 (28%), Gaps = 63/264 (23%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +       ++  + L   +    ++   ++ LD+  N         +   F+++ +L L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNL 65

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPN---------WINNLTGMVTSCSFTR 112
            SN  +  L   L  L  L+ LD+ +  +   +             NN++          
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNIS---------- 112

Query: 113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 172
                +                                + I ++ N  +    L+     
Sbjct: 113 ----RVS------------------------CSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 173 ALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSGEIPES--MSSLTFSNHLNLSN 229
            +  L+   N        E      +LE ++   N +  ++      + L     L+LS+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSS 200

Query: 230 NNLTGKIPSS----TQLQSFDVSS 249
           N L   +         +    + +
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRN 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 25/263 (9%), Positives = 67/263 (25%), Gaps = 54/263 (20%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
                   + L  NK+++   +     + ++ LD+  NE        +      +  L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
           + N  +  +  ++     L+ LD++   L+  +     +                     
Sbjct: 177 QYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA------------------- 214

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                      +   I +  N     I   +   + L   +   
Sbjct: 215 --------------------------GV-TWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 182 NSFTRR-IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG-KIPSS 239
           N F    + +       ++++      +     ++    T     +           P +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 240 TQLQSFDVSSFAGNDLCGAPIPK 262
            +L +      A     G+   +
Sbjct: 305 DRLIALKRKEHALLSGQGSETER 327

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 31/240 (12%), Positives = 59/240 (24%), Gaps = 23/240 (9%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   + W+ L  NKL   I  +L+    LE  D+  N F          +  R+  +  
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
           ++ K         C +P   +              + + L  +        S Q      
Sbjct: 270 QTVKKLTGQNEEECTVP--TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
           ++                           R ID  +  +   I       +A  +L    
Sbjct: 328 LECEREN------------------QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
            +   ++         L+                E  S L     +      +  +  S 
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 6e-12
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 56/247 (22%)

Query: 4   LTSLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           +     L+L +  LS   D L        +  L++ +N  + ++P         +  L  
Sbjct: 58  INQFSELQLNRLNLSSLPDNL-----PPQITVLEITQNALI-SLPELPA----SLEYLDA 107

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N+    LP     L   + LD+ +  L+  +P     L  +  +    +     LP  
Sbjct: 108 CDNRLST-LPELPASL---KHLDVDNNQLT-MLPELPALLEYI--NADNNQL--TMLP-- 156

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                 E   +L  ++ +  N  +  +P    +L+   +L+ S 
Sbjct: 157 ----------------------ELPTSL-EVLSVRNNQLT-FLPELPESLE---ALDVST 189

Query: 182 NSFTRRIPESIGVMTSLES----IDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
           N     +P         E          N+++  IPE++ SL  +  + L +N L+ +I 
Sbjct: 190 NLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 238 SSTQLQS 244
            S   Q+
Sbjct: 248 ESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 28/124 (22%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALH-----------------SLNFSYNSFTR 186
           +++   + +++I++N     +P    +L+ L                   L+   N  T 
Sbjct: 76  DNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM 134

Query: 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSF 245
            +PE       LE I+   NQL+  +PE  +SL     L++ NN LT  +P     L++ 
Sbjct: 135 -LPELPA---LLEYINADNNQLT-MLPELPTSLE---VLSVRNNQLT-FLPELPESLEAL 185

Query: 246 DVSS 249
           DVS+
Sbjct: 186 DVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 53/236 (22%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
              +  L + +N L   +     +   LE LD  +N       + + E  + +  L + +
Sbjct: 79  PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRL-----STLPELPASLKHLDVDN 129

Query: 64  NKFHGPLPTRLCDLP-FLQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLP 121
           N+      T L +LP  L+ ++  +  L+  +P    +L  + V +   T        LP
Sbjct: 130 NQL-----TMLPELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTF-------LP 176

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS----L 177
                                 E   +L   +D+S N     +P                
Sbjct: 177 ----------------------ELPESL-EALDVSTNLLES-LPAVPVRNHHSEETEIFF 212

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
               N  T  IPE+I  +    +I    N LS  I ES+S  T     +      +
Sbjct: 213 RCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 145 DILNLVRMIDISRNNFSGKIPLE----VTNLKALHSLNFSYNSFTRRIPESIGVMTSLES 200
            I N   +   S  N       +        +       + N     + E +  +     
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSE 63

Query: 201 IDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSS 249
           +  +   LS  +P+++   +T    L ++ N L   +P     L+  D   
Sbjct: 64  LQLNRLNLS-SLPDNLPPQIT---VLEITQNALI-SLPELPASLEYLDACD 109

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS---RMVVL 59
             TSL  L +  N+L+  +    ++   LE+LDV  N    ++P             +  
Sbjct: 158 LPTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 60  ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT 102
             R N+    +P  +  L     + + D  LS  I   ++  T
Sbjct: 213 RCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 63/241 (26%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSL-KNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              SL  L +  N+L+      L +    LE ++   N+      T + E  + + VL +
Sbjct: 118 LPASLKHLDVDNNQLT-----MLPELPALLEYINADNNQL-----TMLPELPTSLEVLSV 167

Query: 62  RSNKFHGPLPTRLCDLPF-LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           R+N+      T L +LP  L+ LD++   L  ++P                         
Sbjct: 168 RNNQL-----TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHS---------------- 205

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                                N  +  IP  + +L    ++   
Sbjct: 206 --------------------------EETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
            N  + RI ES+   T+           S        +       +           S  
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD--GQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 241 Q 241
            
Sbjct: 297 S 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFST---NQLSGEIPESMSSLT 220
           I L + N  +L S N  YN+ +    +        E         N+    + E +  + 
Sbjct: 3   IMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 221 FSNHLNLSNNNLTGKIPSS--TQLQSFDVSS 249
             + L L+  NL+  +P +   Q+   +++ 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPPQITVLEITQ 89

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 41/268 (15%), Positives = 83/268 (30%), Gaps = 49/268 (18%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +   L  L +  N L      + +  T+L++L +  N    ++          +    +
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANV 193

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N       + L     ++ LD +  +++         LT +    +        L  P
Sbjct: 194 SYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 248

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFS 180
                                      L   +D+S N    KI       ++ L  L  S
Sbjct: 249 --------------------------GL-VEVDLSYNELE-KIMYHPFVKMQRLERLYIS 280

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
            N     +      + +L+ +D S N L   +  +        +L L +N++   +  ST
Sbjct: 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST 337

Query: 241 --QLQSFDVSSFAGNDL---CGAPIPKN 263
              L++  +S    ND        + +N
Sbjct: 338 HHTLKNLTLS---HNDWDCNSLRALFRN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 16/251 (6%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
               ++  L +G N +        +N   L  L +  N+   ++P  I     ++  L +
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +N               LQ L ++   L+    + I +L     S +   +    L +P
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST----LAIP 204

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
           I V  +     S+      V     + L  ++ +  NN +      + N   L  ++ SY
Sbjct: 205 IAVEELDASHNSINV----VRGPVNVEL-TILKLQHNNLT-DTA-WLLNYPGLVEVDLSY 257

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT---GKIPS 238
           N   + +      M  LE +  S N+L   +      +     L+LS+N+L       P 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 239 STQLQSFDVSS 249
             +L++  +  
Sbjct: 317 FDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 61/244 (25%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   +  L L   ++      +     T++ L +G N     +P  + +    + VL+L
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N           + P L  L +++ NL     +     T                   
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------- 165

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     +L + + +S N  +    ++++ + +L   N SY
Sbjct: 166 --------------------------SL-QNLQLSSNRLTH---VDLSLIPSLFHANVSY 195

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSST 240
           N  +     ++ +  ++E +D S N ++  +   +   LT    L L +NNLT       
Sbjct: 196 NLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELT---ILKLQHNNLT-DTAWLL 245

Query: 241 QLQS 244
               
Sbjct: 246 NYPG 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 57/250 (22%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCT--TLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
               V+  +  +  + D+    ++ T    + +    +     +P  + + F ++ +L L
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 76

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
              +              +Q L +    +    P+   N+                    
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------------------- 117

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFS 180
                                      L  ++ + RN+ S  +P  +  N   L +L+ S
Sbjct: 118 --------------------------LL-TVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSS 239
            N+  R   ++    TSL+++  S+N+L+  +  S+  SL    H N+S N L+  +   
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLF---HANVSYNLLS-TLAIP 204

Query: 240 TQLQSFDVSS 249
             ++  D S 
Sbjct: 205 IAVEELDASH 214

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 50/253 (19%), Positives = 77/253 (30%), Gaps = 54/253 (21%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF-VGNIPTWIGERFSRMVVLIL 61
            L SL  L    NK       S  +  +LE LD+  N        +      + +  L L
Sbjct: 323 KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N     + +    L  L+ LD              +NL  M     F           
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQH-----------SNLKQMSEFSVFLS--------- 419

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                    L  +  +DIS  +           L +L  L  + 
Sbjct: 420 -------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 182 NSFTRRI-PESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT----GKI 236
           NSF     P+    + +L  +D S  QL    P + +SL+    LN+++N L     G  
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 237 PSSTQLQSFDVSS 249
              T LQ   + +
Sbjct: 515 DRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 46/241 (19%), Positives = 72/241 (29%), Gaps = 53/241 (21%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
            S   L L  N L      S  +   L+ LD+   E    I     +  S +  LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN 86

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
                       L  LQ L   +TNL+      I +L                       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---------------------- 124

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTNLKALHSLNFSYNS 183
                                   L + ++++ N   S K+P   +NL  L  L+ S N 
Sbjct: 125 -----------------------TL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 184 FTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
                   + V+  +     S+D S N ++  I          + L L NN  +  +  +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 240 T 240
            
Sbjct: 220 C 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 59/252 (23%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           LT++    L    +    +         + L++   +F G  PT    +   +  L   S
Sbjct: 281 LTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKF-GQFPTL---KLKSLKRLTFTS 334

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           NK          DLP L+ LD     LS    N ++       S S              
Sbjct: 335 NKGGNAFS--EVDLPSLEFLD-----LSR---NGLSFKG--CCSQSDFG----------- 371

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183
                                     ++ +D+S N     +      L+ L  L+F +++
Sbjct: 372 -----------------------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 184 FTRRIPESI-GVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS--- 239
             +    S+   + +L  +D S            + L+    L ++ N+           
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 240 --TQLQSFDVSS 249
               L   D+S 
Sbjct: 468 ELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 35/256 (13%), Positives = 69/256 (26%), Gaps = 56/256 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   L  L L + ++      + ++ + L +L +  N    ++        S +  L+ 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
                       +  L  L+ L++A            N +        F+          
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAH-----------NLIQSFKLPEYFSN--------- 147

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH----SL 177
                                    L  +  +D+S N        ++  L  +     SL
Sbjct: 148 -------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKI 236
           + S N     I         L  +    N  S  + ++    L       L       + 
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG----EF 237

Query: 237 PSSTQLQSFDVSSFAG 252
            +   L+ FD S+  G
Sbjct: 238 RNEGNLEKFDKSALEG 253

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 54/291 (18%), Positives = 95/291 (32%), Gaps = 47/291 (16%)

Query: 1   MGSLTSLVWLRLGKNKLSV---DILVSLKNCTTLE-SLDVGENEFVGNIPTWIGERFSRM 56
             +LT+L  L L  NK+       L  L     L  SLD+  N  +  I     +    +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR-L 202

Query: 57  VVLILRSNKFHGPLPTRLCD-LPFLQILDIA------DTNLSGAIPNWINNLTGMVTSCS 109
             L LR+N     +       L  L++  +       + NL     + +  L  +     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 110 FTRSVQQYLPLPIDVGVIL---------------VEKASVVSKGEMVDYEDI-------- 146
               +  YL   ID+   L               V+  S     + ++  +         
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 147 -LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDF 203
            L  ++ +  + N           +L +L  L+ S N  +      +S    TSL+ +D 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-----TQLQSFDVSS 249
           S N +   +  +   L    HL+  ++NL      S       L   D+S 
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 53/246 (21%)

Query: 29  TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88
            + ++LD+  N    ++ ++    F  + VL L   +           L  L  L +   
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 89  NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN 148
            +        + L+                                             +
Sbjct: 87  PIQSLALGAFSGLS---------------------------------------------S 101

Query: 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQ 207
           L + +     N +      + +LK L  LN ++N     ++PE    +T+LE +D S+N+
Sbjct: 102 L-QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 208 LSGEIPESMSSLT----FSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPIPKN 263
           +       +  L      +  L+LS N +    P + +       +   N      + K 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKT 219

Query: 264 CTENVS 269
           C + ++
Sbjct: 220 CIQGLA 225

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 48/208 (23%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
             TSL +L L  N +   +  +      LE LD   +         +      ++ L + 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
                         L  L++L +A            N+         FT           
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAG-----------NSFQENFLPDIFTE---------- 468

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSY 181
                                   L  +  +D+S+     ++      +L +L  LN + 
Sbjct: 469 ------------------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMAS 503

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLS 209
           N            +TSL+ I   TN   
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 36/267 (13%), Positives = 77/267 (28%), Gaps = 33/267 (12%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           SL+ L  L L  N +    L +    ++L+ L   E     ++  +       +  L + 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 63  SNKF-HGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            N      LP    +L  L+ LD++   +       +  L  M    + +  +       
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNF 191

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFS 180
           I  G                     + L   + +  N  S  +       L  L      
Sbjct: 192 IQPGAF-----------------KEIRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 181 YNSFTR--RIPE-SIGVMTSLESIDFSTNQLSG------EIPESMSSLTFSNHLNLSNNN 231
              F     + +     +  L ++     +L+       +I +  + LT  +  +L +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 232 LTGKIPSS--TQLQSFDVSSFAGNDLC 256
           +      S     Q  ++ +       
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFP 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 35/255 (13%), Positives = 77/255 (30%), Gaps = 26/255 (10%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L+SL  L   +  L+      + +  TL+ L+V  N              + +  L L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 63  SNKFHGPLPTRLCDLPFLQI----LDIADTNLSGAIPNWINNL---TGMVTSCSFTRSVQ 115
           SNK      T L  L  + +    LD++   ++   P     +      + +   + +V 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 116 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH 175
           +     +    +             +   +  N   +    ++   G   L +   + L 
Sbjct: 218 KTCIQGLAGLEVHR-----------LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LA 265

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFSNHLNLSNNNLTG 234
            L++  +     I +    +T++ S    +  +      S          +N        
Sbjct: 266 YLDYYLDD----IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 235 KIPSSTQLQSFDVSS 249
               S  L+    +S
Sbjct: 322 LKLKS--LKRLTFTS 334

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 50/273 (18%), Positives = 85/273 (31%), Gaps = 36/273 (13%)

Query: 2   GSLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRM---- 56
           G L +L  L +  N + S  +     N T LE LD+  N+   +I         +M    
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVT---SCSFTR 112
           + L L  N  +  +         L  L + +   S  +    I  L G+          R
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 113 SVQQYLPLPIDVGVILVEKASV--------VSKGEMVDYEDILNLVRMIDISRNNFSGKI 164
           +              L                  +++D  + L  V    +         
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 165 PLE-VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFS 222
                   + L  +N  +  F          + SL+ + F++N+      E  + SL   
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEVDLPSLE-- 350

Query: 223 NHLNLSNNNLTGKIPSS------TQLQSFDVSS 249
             L+LS N L+ K   S      T L+  D+S 
Sbjct: 351 -FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 53/270 (19%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +   L  L +  N L      + +  T+L++L +  N    ++          +    +
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANV 199

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N       + L     ++ LD +  +++         L                L L 
Sbjct: 200 SYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVEL--------------TILKL- 239

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNL--VRMIDISRNNFSGKIPLEV-TNLKALHSLN 178
                             + D   +LN   +  +D+S N    KI       ++ L  L 
Sbjct: 240 --------------QHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLY 284

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
            S N     +      + +L+ +D S N L   +  +        +L L +N++   +  
Sbjct: 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 341

Query: 239 ST--QLQSFDVSSFAGNDL---CGAPIPKN 263
           ST   L++  +S    ND        + +N
Sbjct: 342 STHHTLKNLTLS---HNDWDCNSLRALFRN 368

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 16/251 (6%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
               ++  L +G N +        +N   L  L +  N+   ++P  I     ++  L +
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 154

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +N               LQ L ++   L+    + I +L       + + ++   L +P
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF----HANVSYNLLSTLAIP 210

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
           I V  +     S+      V     + L  ++ +  NN +      + N   L  ++ SY
Sbjct: 211 IAVEELDASHNSINV----VRGPVNVEL-TILKLQHNNLT-DTA-WLLNYPGLVEVDLSY 263

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT---GKIPS 238
           N   + +      M  LE +  S N+L   +      +     L+LS+N+L       P 
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322

Query: 239 STQLQSFDVSS 249
             +L++  +  
Sbjct: 323 FDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 60/250 (24%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            S   +  L L   ++      +     T++ L +G N     +P  + +    + VL+L
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
             N           + P L  L +++ NL     +     T                   
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------- 171

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                     +L + + +S N  +    ++++ + +L   N SY
Sbjct: 172 --------------------------SL-QNLQLSSNRLTH---VDLSLIPSLFHANVSY 201

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT--GKIPSS 239
           N  +     ++ +  ++E +D S N ++         LT    L L +NNLT    + + 
Sbjct: 202 NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTDTAWLLNY 253

Query: 240 TQLQSFDVSS 249
             L   D+S 
Sbjct: 254 PGLVEVDLSY 263

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 40/266 (15%), Positives = 83/266 (31%), Gaps = 63/266 (23%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L +   +    + +       L +   +E L++ + +    I T+       +  L + 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N      P    ++P L +L +             N+L+      S  R +    P   
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLER-----------NDLS------SLPRGIFHNTP--- 147

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSY 181
                                     L   + +S NN   +I  +      +L +L  S 
Sbjct: 148 -------------------------KLTT-LSMSNNNLE-RIEDDTFQATTSLQNLQLSS 180

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST- 240
           N  T  +   + ++ SL   + S N LS     +++       L+ S+N++   +     
Sbjct: 181 NRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN 231

Query: 241 -QLQSFDVSSFAGNDLCGAPIPKNCT 265
            +L    +     N+L       N  
Sbjct: 232 VELTILKLQ---HNNLTDTAWLLNYP 254

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 3/95 (3%)

Query: 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTN 206
             +   + I           E   L     + F  ++  +     +     +E ++ +  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 207 QLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSST 240
           Q+  EI     +       L +  N +   +P   
Sbjct: 86  QIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 57/256 (22%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
              ++  L + +  L  D+         ++ + V  ++    +P    +    +  L L 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLS 342

Query: 63  SNKF---HGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP 119
            N     +          P LQ L ++  +L  ++      L  +               
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLK-------------- 387

Query: 120 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179
                                       NL   +DISRN F   +P      + +  LN 
Sbjct: 388 ----------------------------NL-TSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
           S       +     +  +LE +D S N L       +  L     L +S N L   +P +
Sbjct: 418 SSTGIRV-VKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPDA 469

Query: 240 TQLQSFDVSSFAGNDL 255
           +      V   + N L
Sbjct: 470 SLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 12/247 (4%)

Query: 2   GSLTSLVWLRLGKNKLSVDILV-SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            +LT+L  LR+G  +   +I        T+L  L++            +      +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLT 178

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L  ++    L      L  ++ L++ DTNL+    + +                      
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
             +  + L+     +S+ E  D      L  + D + +       L       +  L+  
Sbjct: 239 SFNELLKLLRYILELSEVEFDD----CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLS---GEIPESMSSLTFSNHLNLSNNNLTGKIP 237
                  +     ++  ++ I    +++        + + SL F   L+LS N +  +  
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF---LDLSENLMVEEYL 351

Query: 238 SSTQLQS 244
            ++  + 
Sbjct: 352 KNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 47/232 (20%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
             ++  L L  NK++      L+ C  L+ L +  +     I          +  L L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSD 83

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           N       +    L  L+ L++             N    +  +  F             
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMG-----------NPYQTLGVTSLFPN----------- 121

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYN 182
                                  L  ++ + I       +I       L +L+ L     
Sbjct: 122 -----------------------LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
           S      +S+  +  +  +    ++ +  +      L+   +L L + NL  
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 46/278 (16%), Positives = 101/278 (36%), Gaps = 36/278 (12%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWI--GERFSRMVVL 59
            S+  +  L L  ++ +  + +     +++  L++ +        + +   E  S M  L
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 60  ILRSNKFHGPLPTRLCDLP----FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQ 115
             R +         L  L      L  ++  D  L+G + ++  + + +V+      +V 
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNPSESDVVSELGKVETVT 287

Query: 116 -QYLPLPIDVGVILVEKASVVSKGEMVDYEDI---------------LNLVRMIDISRNN 159
            + L +P     +  + ++V S  E V    +               L  +  +D+S N 
Sbjct: 288 IRRLHIP--QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 160 FSGKI---PLEVTNLKALHSLNFSYNSFTRRIPESIGV---MTSLESIDFSTNQLSGEIP 213
              +            +L +L  S N     + ++  +   + +L S+D S N     +P
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 214 ESMSSLTFSNHLNLSNNNLTGKIPSS--TQLQSFDVSS 249
           +S         LNLS+  +   + +     L+  DVS+
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 42/236 (17%), Positives = 73/236 (30%), Gaps = 38/236 (16%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIG--ERFSRMVVL 59
             L  +  + +  +K+ +      ++  +LE LD+ EN  V            +  +  L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 60  ILRSNKFH--GPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQ 116
           +L  N           L  L  L  LDI+       +P+       M   + S T    +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG--IR 423

Query: 117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHS 176
            +                           I   + ++D+S NN      L +  L+    
Sbjct: 424 VVK------------------------TCIPQTLEVLDVSNNNLD-SFSLFLPRLQ---E 455

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
           L  S N     +P++  +   L  +  S NQL          LT    + L  N  
Sbjct: 456 LYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
             +   ++ +D+S N  +     ++     L  L    +       ++   + SLE +D 
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLT-----GKIPSSTQLQSFDVSSF 250
           S N LS         L+   +LNL  N           P+ T LQ+  + + 
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 53/235 (22%)

Query: 3   SLTSLVWLRLGKNKLSV---DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
           +  +L  L L  ++++    D   SL +   LE LD+ +N    ++ +      S +  L
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103

Query: 60  ILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
            L  N +    + +   +L  LQ L I +      I                        
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---------------------- 141

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
                                 +D+  + +L   ++I   +        + +++ +H L 
Sbjct: 142 ----------------------IDFAGLTSL-NELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
              +     +     +++S+  ++     L+      +     S+ +       +
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 54/250 (21%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L  L      ++ +  ++        T+  L + +        + +     ++  + + 
Sbjct: 262 TLNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVE 318

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           ++K      +    L  L+ LD+++        N +       ++C              
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSE--------NLMVEEYLKNSACK------------- 357

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS--GKIPLEVTNLKALHSLNFS 180
                                      ++ + +S+N+     K    +  LK L SL+ S
Sbjct: 358 ----------------------GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSS 239
            N+F   +P+S      +  ++ S+  +   +   +  +L     L++SNNNL       
Sbjct: 396 RNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVSNNNLDSFSLFL 450

Query: 240 TQLQSFDVSS 249
            +LQ   +S 
Sbjct: 451 PRLQELYISR 460

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 39/268 (14%)

Query: 4   LTSLVWLRLGKNKLSV---DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           L +L  L L  N+L +    +   L N   L  LD+ EN+ V  +  ++ +    +  L 
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSN---LTKLDISENKIV-ILLDYMFQDLYNLKSLE 134

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG------------MVTSC 108
           +  N            L  L+ L +   NL+      +++L G             +   
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 109 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 168
           SF + + +   L I     L         G        LNL   + I+  N +  +P   
Sbjct: 195 SF-KRLYRLKVLEISHWPYLDTMTPNCLYG--------LNL-TSLSITHCNLT-AVPYLA 243

Query: 169 -TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLN 226
             +L  L  LN SYN  +      +  +  L+ I     QL+  +       L +   LN
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 227 LSNNNLTGKIPSST-----QLQSFDVSS 249
           +S N LT  +  S       L++  + S
Sbjct: 303 VSGNQLT-TLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 48/258 (18%), Positives = 83/258 (32%), Gaps = 41/258 (15%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           S   L  L L +N +S     +  N   L +L +  N     IP  +    S +  L + 
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT----SCSFTRSVQQYL 118
            NK    L     DL  L+ L++ D +L        + L  +       C+ T       
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS------ 166

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSL 177
              I    +                  +  L  ++ +   N +  I       L  L  L
Sbjct: 167 ---IPTEAL----------------SHLHGL-IVLRLRHLNIN-AIRDYSFKRLYRLKVL 205

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKI 236
             S+  +   +  +     +L S+  +   L+  +P      L +   LNLS N ++  I
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 237 PSST-----QLQSFDVSS 249
             S      +LQ   +  
Sbjct: 264 EGSMLHELLRLQEIQLVG 281

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 37/237 (15%), Positives = 68/237 (28%), Gaps = 49/237 (20%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
           T    L LGKN++         +   LE L++ EN  V  +          +  L LRSN
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN 90

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
           +           L  L  LDI++  +   +     +L                       
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY---------------------- 128

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNS 183
                                  NL + +++  N+    I     + L +L  L     +
Sbjct: 129 -----------------------NL-KSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN 163

Query: 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
            T    E++  +  L  +      ++     S   L     L +S+      +  + 
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 40/210 (19%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L SL  L L K  L+     +L +   L  L +        I  +  +R  R+ VL +  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL--- 120
             +   +         L  L I   NL+      + +L  +           ++L L   
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-----------RFLNLSYN 258

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNF 179
           PI          S +         ++L L + I +     +  +       L  L  LN 
Sbjct: 259 PI----------STIEGS---MLHELLRL-QEIQLVGGQLA-VVEPYAFRGLNYLRVLNV 303

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLS 209
           S N  T         + +LE++   +N L+
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 7e-11
 Identities = 42/266 (15%), Positives = 72/266 (27%), Gaps = 40/266 (15%)

Query: 2   GSLTSLVWLRLGKN-KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGE--RFSRMVV 58
           G   SL +L    + +  +     +    +L+ L V        I          S +  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 59  LILRSNKFHGPLPTRL--CDLPFLQILDIADTNLSG---AIPNWINNLTGMVTSCSFTRS 113
           L L + +  G  P  L     P L IL++ + + +     +      L   +   S  ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 114 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT---- 169
                                           +   +  +D+S N   G+  L       
Sbjct: 160 HSLNFSCEQ---------------------VRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 170 NLKALHSLNFSYNSFTR---RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-NHL 225
               L  L                       L+ +D S N L               N L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 226 NLSNNNLTGKIPS--STQLQSFDVSS 249
           NLS   L  ++P     +L   D+S 
Sbjct: 259 NLSFTGLK-QVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 40/240 (16%), Positives = 75/240 (31%), Gaps = 30/240 (12%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCT--TLESLDVGENEFVGNIPTWIGERFS----RM 56
            ++ L  L L   +++      L   T   L  L++    +      W+ E        +
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGL 151

Query: 57  VVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ 116
            VL +           ++   P L  LD++D    G               C       Q
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS-------ALCPLKFPTLQ 204

Query: 117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALH 175
            L L            S ++             ++ +D+S N+               L+
Sbjct: 205 VLALRNAGMETPSGVCSALAAA--------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG-EIPESMSSLTFSNHLNLSNNNLTG 234
           SLN S+    + +P+ +     L  +D S N+L     P+ +  +    +L+L  N    
Sbjct: 257 SLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVG---NLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 6/94 (6%)

Query: 2   GSLTSLVWLRLGKNK---LSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVV 58
               +L  L L        S            L+ LD+  N           +  S++  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSG 92
           L L        +P        L +LD++   L  
Sbjct: 258 LNLSFTGLKQ-VPK--GLPAKLSVLDLSYNRLDR 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 49/238 (20%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L  L  L+LG+N +    + +     +L +L++ +N  +  IP+   E  S++  L LR
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLR 155

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           +N            +P L  LD+ +      I        G+                  
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLF----------------- 196

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                    NL + +++   N    +P  +T L  L  L  S N
Sbjct: 197 -------------------------NL-KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
            F    P S   ++SL+ +    +Q+S     +   L     LNL++NNL+  +P   
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 50/206 (24%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L+ L  L L  N +      +     +L  LD+GE + +  I     E    +  L L  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
                 +P  L  L  L+ L+++  +     P   + L+                     
Sbjct: 206 CNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS--------------------- 242

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYN 182
                                   +L + + +  +  S  I       L +L  LN ++N
Sbjct: 243 ------------------------SLKK-LWVMNSQVS-LIERNAFDGLASLVELNLAHN 276

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQL 208
           + +    +    +  L  +    N  
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 49/238 (20%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L  L  L+L +N +    + +      L +L++ +N  +  IP       S++  L LR
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLR 144

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
           +N            +P L+ LD+ +      I        G+                  
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLS----------------- 185

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                    NL R ++++  N   +IP  +T L  L  L+ S N
Sbjct: 186 -------------------------NL-RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
             +   P S   +  L+ +    +Q+      +  +L     +NL++NNLT  +P   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 40/252 (15%), Positives = 73/252 (28%), Gaps = 58/252 (23%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
           T+   L L +N++ +  + S K+   LE L +  N  +  I        + +  L L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122

Query: 65  KFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           +    +P      L  L+ L + +  +        N +  +                   
Sbjct: 123 RLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL------------------- 162

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYN 182
                                      R +D+        I       L  L  LN +  
Sbjct: 163 ---------------------------RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST-- 240
           +    IP     +  L+ +D S N LS   P S   L     L +  + +   I  +   
Sbjct: 196 NLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFD 252

Query: 241 ---QLQSFDVSS 249
               L   +++ 
Sbjct: 253 NLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           + I    R++++  N           +L+ L  L  S N        +   + +L +++ 
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 204 STNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSST 240
             N+L+  IP      L+    L L NN +   IPS  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 148 NLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQ 207
           N+ + + I+  + +   P+    L  L  L       T     ++  +TSL  +D S + 
Sbjct: 67  NI-KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 208 LSGEIPESMSSLTFSNHLNLSNNNLTGKIP---SSTQLQSFDVSS 249
               I   +++L   N ++LS N     I    +  +L+S ++  
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 142 DYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE 199
           +Y  I  L     + I   + +      ++ L +L  L+ S+++    I   I  +  + 
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 200 SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS--TQLQSFDVSS 249
           SID S N    +I   + +L     LN+  + +          +L      S
Sbjct: 140 SIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 63/235 (26%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF--VGNIPTWIGERFSRMVVLI 60
           +  + +   LG++  +    ++     +L  + +       +  I     E    +  L 
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDLTGI-----EYAHNIKDLT 72

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           + +       P  +  L  L+ L I   +++      ++ LT                  
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT------------------ 112

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                      +L  ++DIS +     I  ++  L  ++S++ S
Sbjct: 113 ---------------------------SL-TLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTG 234
           YN     I   +  +  L+S++   + +      E    L     L   +  + G
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLN---QLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 58/210 (27%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF--VGNIPTWIGERFSRMVVLIL 61
           + SL ++ L    ++   L  ++    ++ L +          I        S +  L +
Sbjct: 43  MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPI-----SGLSNLERLRI 95

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
                       L  L  L +LDI+ +    +I   IN L                    
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP------------------- 136

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                      +   ID+S N     I   +  L  L SLN  +
Sbjct: 137 --------------------------KV-NSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGE 211
           +         I     L  +   +  + G+
Sbjct: 169 DGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH 224
            +    + +L  +  +  + T      I    +++ +  +    +      +S L+    
Sbjct: 37  NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLER 92

Query: 225 LNLSNNNLTGKIPSS----TQLQSFDVSS 249
           L +   ++T     +    T L   D+S 
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             L++L  LR+    ++ D + +L   T+L  LD+  +    +I T I     ++  + L
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDL 143

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLT 102
             N     +   L  LP L+ L+I    +       I +  
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFP 181

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  LTSL  L +  +     IL  +     + S+D+  N  + +I     +    +  L 
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLN 165

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSG 92
           ++ +  H      + D P L  L      + G
Sbjct: 166 IQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 69/262 (26%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L  L  L L KN+L        K    L+ L V ENE    +   +    ++M+V+ L 
Sbjct: 98  PLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELG 153

Query: 63  SNKFH-GPLPTR-LCDLPFLQILDIADTNLSGAIPNWI-----------NNLTGMVTSCS 109
           +N      +       +  L  + IADTN++  IP  +           N +T  V + S
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKIT-KVDAAS 211

Query: 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV- 168
                                                LN +  + +S N+ S  +     
Sbjct: 212 LKG----------------------------------LNNLAKLGLSFNSIS-AVDNGSL 236

Query: 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS---------GEIPESMSSL 219
            N   L  L+ + N   + +P  +     ++ +    N +S                +S 
Sbjct: 237 ANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 220 TFSNHLNLSNNNLT-GKIPSST 240
           +    ++L +N +   +I  ST
Sbjct: 296 S---GVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 40/244 (16%), Positives = 83/244 (34%), Gaps = 43/244 (17%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L +L  L L  NK+S     +      LE L + +N+    +P    +    +  L +  
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQELRVHE 130

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAI--PNWINNLTGMVT----SCSFTRSVQQY 117
           N+      +    L  + ++++    L  +         +  +        + T ++ Q 
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHS 176
           LP                            +L   + +  N  + K+       L  L  
Sbjct: 190 LP---------------------------PSL-TELHLDGNKIT-KVDAASLKGLNNLAK 220

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236
           L  S+NS +     S+     L  +  + N+L  ++P  ++   +   + L NNN++  I
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AI 278

Query: 237 PSST 240
            S+ 
Sbjct: 279 GSND 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 46/247 (18%)

Query: 3   SLTSLVWLRLGKNKLSV---DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
           SL SL  L L  N LS         L +   L  L++  N +     T +    +++ +L
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSS---LTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 60  ILRSNKFHGPLPTR-LCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
            + +      +  +    L FL+ L+I  ++L    P  + ++  +            +L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-----------SHL 203

Query: 119 PL---PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV------- 168
            L                ++ +  +    D+ + V  +++   +       E+       
Sbjct: 204 ILHMKQH----------ILLLEIFV----DVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 169 -TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLN 226
                   ++  +  S  + + + +  ++ L  ++FS NQL   +P+ +   LT    + 
Sbjct: 250 LIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIW 307

Query: 227 LSNNNLT 233
           L  N   
Sbjct: 308 LHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 36/258 (13%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
            ++  L L  N+++      L+ C  L++L +  N  +  I          +  L L  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN 110

Query: 65  KFHGPLPTRLCD-LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
                L +     L  L  L++             N    +  +  F      +L     
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLG-----------NPYKTLGETSLF-----SHLTKLQI 153

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYN 182
           + V  ++  + + +    D+  +  L   ++I  ++       +   +++ +  L     
Sbjct: 154 LRVGNMDTFTKIQRK---DFAGLTFL-EELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK 208

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSN--------HLNLSNNNLTG 234
                +   + V +S+E ++     L       +S+   ++        ++ +++ +L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 235 KIPSS---TQLQSFDVSS 249
            +      + L   + S 
Sbjct: 269 VMKLLNQISGLLELEFSR 286

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 38/241 (15%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF-VGNIPTWIGERFSRMVVLI 60
           G  +S   L L  NKL           T L  L +  N        +      + +  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQ-QYLP 119
           L  N     + +    L  L+ LD              +NL  M     F       YL 
Sbjct: 85  LSFNGVIT-MSSNFLGLEQLEHLDFQH-----------SNLKQMSEFSVFLSLRNLIYLD 132

Query: 120 LP------IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLK 172
           +          G+                +  + +L  ++ ++ N+F      ++ T L+
Sbjct: 133 ISHTHTRVAFNGI----------------FNGLSSL-EVLKMAGNSFQENFLPDIFTELR 175

Query: 173 ALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
            L  L+ S     +  P +   ++SL+ ++ S N            L     L+ S N++
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 233 T 233
            
Sbjct: 236 M 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 54/212 (25%)

Query: 3   SLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            L  L  L    + L  +       +   L  LD+            I    S + VL +
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKM 157

Query: 62  RSNKF-HGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
             N F    LP    +L  L  LD++   L    P   N+L+ +                
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------- 201

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNF 179
                                         +++++S NNF   +       L +L  L++
Sbjct: 202 ------------------------------QVLNMSHNNFF-SLDTFPYKCLNSLQVLDY 230

Query: 180 SYNSFTRRIPESI--GVMTSLESIDFSTNQLS 209
           S N       +       +SL  ++ + N  +
Sbjct: 231 SLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 46/245 (18%)

Query: 4   LTSLVWLRLGKNKLS---VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           L  L  L L  NK+S         L+    L+ L + +N  V  IP       S +V L 
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRK---LQKLYISKNHLV-EIPP---NLPSSLVELR 129

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAI--PNWINNLTGMVTSCSFTR--SVQQ 116
           +  N+           L  +  +++    L  +   P   + L       S  +   + +
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK 189

Query: 117 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALH 175
            LP                             L   + +  N     I LE       L+
Sbjct: 190 DLPE---------------------------TL-NELHLDHNKIQ-AIELEDLLRYSKLY 220

Query: 176 SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235
            L   +N        S+  + +L  +    N+LS  +P  +  L     + L  NN+T K
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-K 278

Query: 236 IPSST 240
           +  + 
Sbjct: 279 VGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESID 202
           ++I     ++D+  N+ S ++  +    L+ L++L    N  ++   ++   +  L+ + 
Sbjct: 50  KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 203 FSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSST-----QLQSFDVSSFAGNDLC 256
            S N L  EIP ++ SSL     L + +N +  K+P         +   ++    GN L 
Sbjct: 109 ISKNHLV-EIPPNLPSSLV---ELRIHDNRIR-KVPKGVFSGLRNMNCIEMG---GNPLE 160

Query: 257 GAPIPKN 263
            +     
Sbjct: 161 NSGFEPG 167

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 33/243 (13%), Positives = 70/243 (28%), Gaps = 66/243 (27%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGER-FS--RMVV 58
              +SLV LR+  N++             +  +++G N       +      F   ++  
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGFEPGAFDGLKLNY 176

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
           L +   K  G +P  L     L  L +             N +   +      R      
Sbjct: 177 LRISEAKLTG-IPKDL--PETLNELHLDH-----------NKIQ-AIELEDLLR------ 215

Query: 119 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSL 177
                                        + +  + +  N     I     + L  L  L
Sbjct: 216 ----------------------------YSKLYRLGLGHNQIR-MIENGSLSFLPTLREL 246

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-------SSLTFSNHLNLSNN 230
           +   N  + R+P  +  +  L+ +   TN ++ ++  +            + N ++L NN
Sbjct: 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 231 NLT 233
            + 
Sbjct: 305 PVP 307

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 37/255 (14%), Positives = 75/255 (29%), Gaps = 49/255 (19%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              T L  L    NK++    + +     L  L+   N    NI      +  ++  L  
Sbjct: 167 TPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDC 219

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG-MVTSCSFTRSVQQYLPL 120
            SNK    +   +  L  L   D +   L+    + ++ LT                   
Sbjct: 220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI------- 269

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                   D+ +  ++I            L+VT+   L+ L+  
Sbjct: 270 ------------------------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
               T      +     L  +  +  +L+ E+   +S  T    L+  N ++     S  
Sbjct: 306 AAGITE---LDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVG 358

Query: 241 QLQSFDVSSFAGNDL 255
           ++ + + +  A    
Sbjct: 359 KIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 49/252 (19%), Positives = 85/252 (33%), Gaps = 53/252 (21%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
             LT L  L    N ++    + L   T L  L    N     +        +++  L  
Sbjct: 61  EKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNC 113

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +NK    L   +   P L  L+ A   L+                              
Sbjct: 114 DTNKLT-KLD--VSQNPLLTYLNCARNTLT-----------------------------E 141

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNF 179
           IDV              + +   D+        +D S N  +    L+V+  K L+ LN 
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
             N+ T ++   +     L  +D S+N+L+ EI   ++ LT   + + S N LT ++  S
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS 251

Query: 240 --TQLQSFDVSS 249
             ++L +     
Sbjct: 252 TLSKLTTLHCIQ 263

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 48/248 (19%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L +L  L    + ++   +  ++  T L  L    N     +      + + +  L   S
Sbjct: 41  LATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNIT-TLDL---SQNTNLTYLACDS 94

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           NK    L   +  L  L  L+     L+    +    LT +  + +    +         
Sbjct: 95  NKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI--------- 142

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183
                                D+ +  ++ ++  +       L+VT    L +L+ S+N 
Sbjct: 143 ---------------------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181

Query: 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS--TQ 241
            T      +     L  ++  TN ++         LT    L+ S+N LT +I  +  TQ
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLT---FLDCSSNKLT-EIDVTPLTQ 234

Query: 242 LQSFDVSS 249
           L  FD S 
Sbjct: 235 LTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 48/251 (19%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  LT L +L    NKL+    + +     L  L+   N     +        +++  L 
Sbjct: 102 VTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARN----TLTEIDVSHNTQLTELD 154

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
              NK    L   +     L  LD +   ++    +    L  +  +C            
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRL--NCDTNNI------- 203

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                               +D    + L   +D S N  +    ++VT L  L   + S
Sbjct: 204 ------------------TKLDLNQNIQL-TFLDCSSNKLTE---IDVTPLTQLTYFDCS 241

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239
            N  T  +  S   ++ L ++      L  EI   ++  T   +          ++  + 
Sbjct: 242 VNPLT-ELDVST--LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 240 -TQLQSFDVSS 249
            TQL   D  +
Sbjct: 296 NTQLYLLDCQA 306

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 47/250 (18%), Positives = 81/250 (32%), Gaps = 49/250 (19%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
              T+L +L    NKL+    + +   T L  L+   N+    +      +   +  L  
Sbjct: 82  SQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL-TKLDV---SQNPLLTYLNC 134

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLPL 120
             N     +   +     L  LD         +   +   T + T  CSF +  +     
Sbjct: 135 ARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE----- 184

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
            +DV                        L+  ++   NN +    L++     L  L+ S
Sbjct: 185 -LDVS--------------------QNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCS 220

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG-KIPSS 239
            N  T  I   +  +T L   D S N L+     ++S LT    L+    +L    +  +
Sbjct: 221 SNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT---TLHCIQTDLLEIDLTHN 274

Query: 240 TQLQSFDVSS 249
           TQL  F    
Sbjct: 275 TQLIYFQAEG 284

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/276 (10%), Positives = 64/276 (23%), Gaps = 67/276 (24%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +     L +L    NKL+    + +   T L   D   N     +        S++  L 
Sbjct: 208 LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL-TELDVST---LSKLTTLH 260

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
                    +   L     L             +   + + T +                
Sbjct: 261 CIQTDLLE-ID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQL---------------- 299

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                          ++D      +    L+++    L  L  +
Sbjct: 300 ------------------------------YLLDCQAAGIT---ELDLSQNPKLVYLYLN 326

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240
               T  +   +   T L+S+      +  +    +  +   N+   +          + 
Sbjct: 327 NTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETL 381

Query: 241 QLQSFDVSSFAGN-DLCGAPIPKNCTENVSIFEDEN 275
              S  ++      D  G P+     +     +  N
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 156 SRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES 215
           +         +    L  L SL+   +S T  +   I  +T L  +  ++N ++      
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTLDLSQ 83

Query: 216 MSSLTFSNHLNLSNNNLTG-KIPSSTQLQSFDVSS 249
            ++LT   +L   +N LT   +   T+L   +  +
Sbjct: 84  NTNLT---YLACDSNKLTNLDVTPLTKLTYLNCDT 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 48/248 (19%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIG-ERFSRMVVLI 60
            +LT +  L L  N L    + ++    ++++LD+        I         S + VL 
Sbjct: 82  KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST----QITDVTPLAGLSNLQVLY 135

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L  N+     P  L  L  LQ L I +  +S   P  + NL+ +             L  
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL-----------TTLKA 180

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLN 178
                             ++ D   + +L     + +  N  S   PL   N   L  + 
Sbjct: 181 ---------------DDNKISDISPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVT 223

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
            +  + T +       +          N + G     ++  T S++   ++ NLT  + S
Sbjct: 224 LTNQTITNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

Query: 239 STQLQSFD 246
                S+ 
Sbjct: 277 FINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 65/250 (26%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +L + + +  GK+ ++    V+  +   + +L       V  I     +  + ++ L L+
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEGV--QYLNNLIGLELK 71

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N+     P  L +L  +  L+++   L       ++ + G+                  
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKN-----VSAIAGLQ----------------- 107

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
                                    ++ + +D++    +   PL    L  L  L    N
Sbjct: 108 -------------------------SI-KTLDLTSTQITDVTPLA--GLSNLQVLYLDLN 139

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSNNNLTG--KIPSS 239
             T      +  +T+L+ +     Q+S   P  ++S LT    L   +N ++    + S 
Sbjct: 140 QITN--ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT---TLKADDNKISDISPLASL 194

Query: 240 TQLQSFDVSS 249
             L    + +
Sbjct: 195 PNLIEVHLKN 204

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 16/248 (6%)

Query: 2   GSLTSLVWLRLGKNKL-SVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           G+LT L +L L   K   +D+L       +   LD+      G     +    + ++ L+
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 61  LRSNK-FHGPLPTRLCDLPFLQILDIADTNLS-GAIPNWINNLTGMVTSCSFTRSVQQYL 118
              N  F   +   +  L  LQ+ +I   + +   +  +++ LT   T  + T    +  
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 119 PLPIDVGVILVEKASV-------------VSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165
                          V             + + E    E  L  + +  +    F     
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL 225
              +    ++    S +             +S   ++F+ N  +  + +  S+L     L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 226 NLSNNNLT 233
            L  N L 
Sbjct: 383 ILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 31/251 (12%), Positives = 80/251 (31%), Gaps = 34/251 (13%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNI----PTWIGERFSRMVV 58
           +L ++    +         L        +E L++        I     T+       +++
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 59  LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL 118
             +++  F             + I  +            I++   +   C  + S   +L
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKML-----------SISDTPFIHMVCPPSPSSFTFL 358

Query: 119 PL--------PIDVGVILVEKASVVSKG-------EMVDYEDILNLVRMIDISRNNF-SG 162
                            L    +++ +        ++      ++ +  +D+S N+  S 
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222
                    +++  LN S N  T  +   +     ++ +D   N++   IP+ ++ L   
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475

Query: 223 NHLNLSNNNLT 233
             LN+++N L 
Sbjct: 476 QELNVASNQLK 486

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 38/297 (12%), Positives = 86/297 (28%), Gaps = 35/297 (11%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
           G+++ L +L L    L    ++ + +    + L V    +         E         L
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED---PEGLQDFNTESL 168

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
                       + D+    + ++  +N+   + +   +    + +   T      L L 
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 122 ----IDVGVILVEKASVVSKGEMVDYEDI-----------------LNLVRMIDISRNNF 160
                    I + +    +        ++                 L  + +  +  + F
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLT 220
                        ++  NF+ +            ++    +DFS N L+  + E+   LT
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348

Query: 221 FSNHLNLSNNNLTGKIPSS-------TQLQSFDVSSFAGNDLCGAPIPKNCTENVSI 270
               L L  N L  ++            LQ  D+S    N +       +C+   S+
Sbjct: 349 ELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQ---NSVSYDEKKGDCSWTKSL 401

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 25/229 (10%)

Query: 6   SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
           S+  ++L       D   S  +   L    V  + F G   ++I E FS M +     + 
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311

Query: 66  FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG 125
                      +     LD ++  L+  +     +LT +           + L L ++  
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-----------ETLILQMNQL 360

Query: 126 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSF 184
             L + A + ++         +  ++ +DIS+N+ S        +  K+L SLN S N  
Sbjct: 361 KELSKIAEMTTQ---------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           T  I   +     ++ +D  +N++   IP+ +  L     LN+++N L 
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 38/259 (14%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           SL+ L  L +  N++    +   K    LE LD+  N+    I          +  L L 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISC---HPTVNLKHLDLS 98

Query: 63  SNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            N F   P+     ++  L+ L ++ T+L  +    I +L           +  +     
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 122 IDVGVILVEKASVVSK-----------GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN 170
                       V               + V   ++ N+  +++ ++ ++   I  ++  
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 171 LKALHSLNFSYNSFTRRIPESIGVM---TSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227
              L +L  +    T      I  +   T++     S  +L G++       + ++   L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 228 SNNNLTGKIPSSTQLQSFD 246
           S + +   +    Q   ++
Sbjct: 279 SIHQVVSDVFGFPQSYIYE 297

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204
           D+     +++IS+N  S     ++ +L  L  L  S+N               LE +D S
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
            N+L         +L    HL+LS N   
Sbjct: 78  HNKLVKISCHPTVNLK---HLDLSFNAFD 103

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 44/248 (17%), Positives = 75/248 (30%), Gaps = 32/248 (12%)

Query: 3   SLTSLVWLRLGKNKLSV---DILVSLKNCTTLESLDVGENEFVGNIPTWIGE-------R 52
           ++     L L  NK+     + L++ +       L +           W+G        +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 53  FSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR 112
            + +  L L  N F   +  R  D        IA T +   I +   N+       +F  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDA-------IAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 113 SVQQYLPLPIDVGVILVE----KASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 168
                       GV   +    K   + K            +  + +++N  + KI    
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVF----SHFTDLEQLTLAQNEIN-KIDDNA 318

Query: 169 -TNLKALHSLNFSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHL 225
              L  L  LN S N     I   +   +  LE +D S N +   + +     L     L
Sbjct: 319 FWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376

Query: 226 NLSNNNLT 233
            L  N L 
Sbjct: 377 ALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 49/286 (17%), Positives = 86/286 (30%), Gaps = 45/286 (15%)

Query: 3   SLTSLVWLRLGKNKLSVDILV--SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
            L +L  L L +  L   +L     K  T+LE L + +N      P        R  VL 
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 61  LRSNKFH----------GPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT---- 106
           L  NK                  L  L  + + D+ +  L           T + T    
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 107 ------------SCSFTRSVQQYLPLPIDVGVILVEKASVVSK-GEMVDYEDILNLVRMI 153
                         +   +  Q L L     +      +               + V+  
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 154 DISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGV---MTSLESIDFSTNQLS 209
           D+S++     +   V ++   L  L  + N    +I +       +T L  ++ S N L 
Sbjct: 281 DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD--NAFWGLTHLLKLNLSQNFLG 336

Query: 210 GEIPESM-SSLTFSNHLNLSNNNLTGKIPSS-----TQLQSFDVSS 249
             I   M  +L     L+LS N++   +          L+   + +
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM-SSLTFSNHLNLSNNNL 232
           ++ ++ S NS       S   +  L+ +          I  +    L+    L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 233 TGKIPSS-----TQLQSFDVSSFAGNDLCGAPIPKNC 264
             ++ +        L+   ++     +L GA +  N 
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQ---CNLDGAVLSGNF 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 44/300 (14%), Positives = 84/300 (28%), Gaps = 104/300 (34%)

Query: 9   WLRLGKNKLSVDILVSLKN-CTTLESLDVGENEFVGNIPT---WIGERFSRMVVLILRSN 64
           WL L        +L  L+     ++      ++   NI      I     R    +L+S 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSK 241

Query: 65  KFHGPLPTRLCDLPFLQILD-IADTNLSGAIPNWINNLTG----MVTSCSFTR--SVQQY 117
            +        C    L +L  + +           N        ++T    TR   V  +
Sbjct: 242 PY------ENC----LLVLLNVQNAKA-------WNAFNLSCKILLT----TRFKQVTDF 280

Query: 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH-S 176
           L       + L   +  ++  E+        L++ +D         +P EV        S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCR----PQDLPREVLTTNPRRLS 331

Query: 177 LNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236
           +          I ESI    +                      T+ N  +++ + LT  I
Sbjct: 332 I----------IAESIRDGLA----------------------TWDNWKHVNCDKLTTII 359

Query: 237 PSS-TQLQSFDVSSFAGNDLCGAPIPKNCTENVSIF-EDEN----------GDEDEDEVD 284
            SS   L+  +               +   + +S+F    +           D  + +V 
Sbjct: 360 ESSLNVLEPAEY--------------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209
           VR++ ++  + +  +   +  L  +  L+ S+N     +P ++  +  LE +  S N L 
Sbjct: 443 VRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499

Query: 210 GEIPESMSSLTFSNHLNLSNNNLT-----GKIPSSTQLQSFDVSSFAGNDLCGAP 259
             +   +++L     L L NN L        + S  +L   ++    GN LC   
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ---GNSLCQEE 549

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 51/290 (17%), Positives = 86/290 (29%), Gaps = 66/290 (22%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            +L +L WL L +NK+    L SLK+   L+SL +  N  + +I         ++  L L
Sbjct: 84  TNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYL 138

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
            +NK        L  L  L  L + D  +S      I  L G+                 
Sbjct: 139 GNNKITDITV--LSRLTKLDTLSLEDNQISD-----IVPLAGLT---------------- 175

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
                                      L + + +S+N+ S    L    LK L  L    
Sbjct: 176 --------------------------KL-QNLYLSKNHISDLRALA--GLKNLDVLELFS 206

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241
                +       +    ++  +   L       ++    S+  +    N+   +P  T 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSL-------VTPEIISDDGDYEKPNVKWHLPEFTN 259

Query: 242 LQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHWLYVSA 291
             SF    +    +  A    +      + E      D D       V A
Sbjct: 260 EVSF--IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 67/251 (26%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF--VGNIPTWIGERFSRMVVLI 60
           +    +   L K  ++    V+     +++ +    ++   V  I     +    +  L 
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLF 71

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
           L  NK     P  L +L  L  L + +  +       +++L  +                
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-----LSSLKDLK--------------- 109

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                                       L + + +  N  S    L   +L  L SL   
Sbjct: 110 ---------------------------KL-KSLSLEHNGISDINGLV--HLPQLESLYLG 139

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT--GKIPS 238
            N  T      +  +T L+++    NQ+S +I   ++ LT   +L LS N+++    +  
Sbjct: 140 NNKITD--ITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHISDLRALAG 195

Query: 239 STQLQSFDVSS 249
              L   ++ S
Sbjct: 196 LKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 63/241 (26%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  L ++  L L  NKL+   +  L N   L  L + EN+ + ++ +             
Sbjct: 61  IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDLSS------------- 104

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
                        L DL  L+ L +    +S  I   + +L  +           + L L
Sbjct: 105 -------------LKDLKKLKSLSLEHNGIS-DING-LVHLPQL-----------ESLYL 138

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLN 178
                             ++ D   +  L     + +  N  S  +PL    L  L +L 
Sbjct: 139 ---------------GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLY 181

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
            S N  +     ++  + +L+ ++  + +   +     S+L   N +  ++ +L      
Sbjct: 182 LSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 239 S 239
           S
Sbjct: 240 S 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 9/90 (10%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           +     ++  ++ + + +  +      L ++  +  + +     + + I  + ++  +  
Sbjct: 18  DAFAETIK-DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFL 72

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           + N+L+ +I + +++L     L L  N + 
Sbjct: 73  NGNKLT-DI-KPLTNLKNLGWLFLDENKIK 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 40/231 (17%), Positives = 67/231 (29%), Gaps = 48/231 (20%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
           +  +L  L L  N L+     +      LE LD+ +N  + ++         R+  L L 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
                   P     L  LQ L + D  L     +   +L                     
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-------------------- 153

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSY 181
                                    NL   + +  N  S  +P      L +L  L    
Sbjct: 154 -------------------------NL-THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232
           N      P +   +  L ++    N LS    E+++ L    +L L++N  
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 147 LNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESI-GVMTSLESIDFS 204
              + ++ +  N  + +I     T L  L  L+ S N+  R +  +    +  L ++   
Sbjct: 55  CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 205 TNQLSGEIPES----MSSLTFSNHLNLSNNNLTGKIPSST 240
              L  E+       +++L    +L L +N L   +P  T
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQ---YLYLQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 154 DISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI 212
            +  N     +P +   +L  L  L    N  +     +   + SL+ +    N+++   
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 213 PESMSSLTFSNHLNLSNNNLT 233
           P +   L     L L  NNL+
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 42/239 (17%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L + V   LGK  ++   LVS K  + +++ +   +  + ++     + F+ +  L L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSN-IQSLAGM--QFFTNLKELHLS 71

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            N+     P  L DL  L+ L +    L       +N +                L L  
Sbjct: 72  HNQISDLSP--LKDLTKLEELSVNRNRLKN-----LNGIPSAC---------LSRLFL-- 113

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                           E+ D + +++L    ++ I  N     + L    L  L  L+  
Sbjct: 114 -------------DNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLH 158

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239
            N  T      +  +  +  ID +  +   E  +    L  +N +   +         S
Sbjct: 159 GNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 144 EDILNL-----VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL 198
             +            ++ + + +  +  +   L  + + N   ++        +   T+L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQS--LAGMQFFTNL 65

Query: 199 ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           + +  S NQ+S ++   +  LT    L+++ N L 
Sbjct: 66  KELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK 98

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 40/266 (15%), Positives = 86/266 (32%), Gaps = 47/266 (17%)

Query: 5   TSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGNIPTWIGE--------- 51
            S+  + L  N +  +    +  ++ +   LE  +  +  F G +   I E         
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQAL 90

Query: 52  -RFSRMVVLILRSNKFHGP-----LPTRLCDLPFLQILDIADTNLS--GAIPNWINNLTG 103
            +  ++  + L  N F GP     L   L     L+ L + +  L            +  
Sbjct: 91  LKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-----KIAR 144

Query: 104 MVTSCSFTRSVQQYLPL-PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
            +   +  +  +   PL  I  G   +E  S+    +    +    L   + + +N    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF--QSHRLL-HTVKMVQNGIRP 201

Query: 163 K-----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGE-- 211
           +     +   +   + L  L+   N+FT      +  ++    +L  +  +   LS    
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 212 --IPESMSSLTFSN--HLNLSNNNLT 233
             + ++ S L       L L  N + 
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIE 287

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 147 LNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESI-GVMTSLESIDFS 204
           L  +  I +S +    ++      NL  +  +          I       +  L+ +   
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 205 TNQLSGEIPE--SMSSLTFSNHLNLSNNNLTGKIPSST 240
              L    P+   + S      L +++N     IP + 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 58/245 (23%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
             S   L+L +  L      +  N   +  + V  +  +  + +      S++  + +R+
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 64  NKFHGPLPTRLCD-LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            +    +       LP L+ L I +T L    P+            +   S         
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDL-----------TKVYS--------- 128

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNL-KALHSLNFS 180
                                    ++  +++I+ N +   IP+     L     +L   
Sbjct: 129 ------------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES-----MSSLTFSNHLNLSNNNLTGK 235
            N FT  +       T L+++  + N+    I +       S  +    L++S  ++T  
Sbjct: 165 NNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS---LLDVSQTSVT-A 219

Query: 236 IPSST 240
           +PS  
Sbjct: 220 LPSKG 224

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 153 IDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGE 211
           +  +R+         +   + L  L        + +    +  +  L ++    + L   
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 212 IPESMSSLTFSNHLNLSNNNLT 233
            P++       + LNLS N L 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 147 LNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFST 205
              +  + I        + L     L  L +L    +      P++      L  ++ S 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 206 NQLSGEIPESMSSLTFSNHLNLSNNNLT 233
           N L   +            L LS N L 
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPLH 116

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR 62
            L S+  +    + +    +  ++    +  L +  N+ + +I          +  L L 
Sbjct: 44  ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNK-LTDIKPL--ANLKNLGWLFLD 98

Query: 63  SNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI 122
            NK        L DL  L+ L +    +S  I   + +L  +           + L L  
Sbjct: 99  ENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVHLPQL-----------ESLYL-- 141

Query: 123 DVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
                           ++ D   +  L     + +  N  S  +PL    L  L +L  S
Sbjct: 142 -------------GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLS 186

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
            N  +     ++  + +L+ ++  + +   +     S+L   N +  ++ +L 
Sbjct: 187 KNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 33/229 (14%), Positives = 77/229 (33%), Gaps = 24/229 (10%)

Query: 15  NKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWI-----GERFSRMVVLILRSNKFHGP 69
           + ++  I+ + +     E L  G+ +F     +WI           M +L     K    
Sbjct: 125 SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184

Query: 70  LPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILV 129
           L       P L+ L+I    L  ++   I     + +       +  Y+ +        +
Sbjct: 185 LSIGKKPRPNLKSLEIISGGLPDSVVEDI-----LGSDLPNLEKLVLYVGVEDYGFDGDM 239

Query: 130 EKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP---LEVTNLKALHSLNFSYNSFT- 185
                +   +          ++ + I        +    LE   L  L +++ S    T 
Sbjct: 240 NVFRPLFSKDR------FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 186 ---RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231
              R + + +  +  L+ I+   N LS E+ + +   +    +++S++ 
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK-SLPMKIDVSDSQ 341

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 154 DISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP 213
            +S N         +     L  LN      T+ +      +  L ++D S NQL   +P
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGT-LPVLGTLDLSHNQLQ-SLP 93

Query: 214 ESMSSLTFSNHLNLSNNNLTGKIPSS-----TQLQ 243
               +L     L++S N LT  +P        +LQ
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV---MTSLESI 201
             L ++  +D+S N     +PL    L AL  L+ S+N  T  +P   G    +  L+ +
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPL--GALRGLGELQEL 129

Query: 202 DFSTNQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSS-----TQLQSFDVSS 249
               N+L   +P  + +       L+L+NNNLT ++P+        L +  +  
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 150 VRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGV---MTSLESIDFST 205
           +  I + +N     IP    +  K L  ++ S N  +  +         + SL S+    
Sbjct: 34  ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAP--DAFQGLRSLNSLVLYG 89

Query: 206 NQLSGEIPESM-SSLTFSNHLNLSNNNLTGKIPSST 240
           N+++ E+P+S+   L     L L+ N +   +    
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-36  Score=289.08  Aligned_cols=263  Identities=31%  Similarity=0.474  Sum_probs=184.1

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      ++++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+. .+++|+.|++++|++++.+|..++.+++|++
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            344455555555555444555555555555555555555555555544 4555555555555555555555555555666


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeee-------------ee------------------
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILV-------------EK------------------  131 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-------------~~------------------  131 (312)
                      |++++|++++..|..+..+++|+.+++.+|.+.+.++..+.......             ..                  
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            66666555555555555666666666666655544333222100000             00                  


Q ss_pred             -----------------eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcC
Q 047128          132 -----------------ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV  194 (312)
Q Consensus       132 -----------------~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  194 (312)
                                       ......+..+..+..++.|++||+++|++++.+|..+++++.|+.|+|++|+++|.+|..++.
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence                             000111222334455788999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCCCCCCCCCCC
Q 047128          195 MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPKNCTEN  267 (312)
Q Consensus       195 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~p~~~~c~~~  267 (312)
                      +++|+.||+++|++++.+|..+..++.|++|++++|+++|.+|...++.++....+.|| .+||.|.. .|...
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999 79999876 78644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.7e-35  Score=253.96  Aligned_cols=256  Identities=29%  Similarity=0.457  Sum_probs=218.9

Q ss_pred             CCcCEEECCCCcccc--cccccccCCCCCCEEECcC-CCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            5 TSLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGE-NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..+. .+++|++|++++|++++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578899999999987  7888999999999999995 888888888887 899999999999999988898899999999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---eeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVSKGEMVDYEDILNLVRMIDISRN  158 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  158 (312)
                      +|++++|.+++..|..+..+++|+.|++.+|.+.+..+..+...   ...+....+...+..+..+..++ |++|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            99999999988889999999999999999999886665544432   12222222223334455566666 999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                      .+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999866665 78899999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccccccCCC-CCCCCCCCCC
Q 047128          239 STQLQSFDVSSFAGND-LCGAPIPKNC  264 (312)
Q Consensus       239 ~~~l~~l~~~~l~~n~-l~~~p~~~~c  264 (312)
                      ...+++++.+++.+|+ +||.|.+ .|
T Consensus       287 ~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          287 GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CccccccChHHhcCCCCccCCCCC-CC
Confidence            8889999999999995 9998876 46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-32  Score=264.21  Aligned_cols=255  Identities=27%  Similarity=0.398  Sum_probs=205.8

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++|++|++++|.+++..|..+.++++|++|++++|++++.+|..+. .+++|+.|++++|++++.+|..+..+++|++|
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            56788888888888777788888888888888888888877777776 78888888888888887788888888888888


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      ++++|++++..|..+..+++|+.+++.+|.+.+..+..+..  .........+...+..+..+..+++|++|++++|.++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            88888888788888888888888888888877665544432  1222222223333455666777888999999999888


Q ss_pred             ccCChhh----------------------------------------------------------------------hcC
Q 047128          162 GKIPLEV----------------------------------------------------------------------TNL  171 (312)
Q Consensus       162 ~~~p~~~----------------------------------------------------------------------~~l  171 (312)
                      +.+|..+                                                                      ..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            7766543                                                                      335


Q ss_pred             CCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccc
Q 047128          172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSF  250 (312)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l  250 (312)
                      ++|+.|++++|+++|.+|..++.+++|+.|++++|++++.+|+.++.+++|+.||+++|+++|.+|.. ..+..|+.+++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            67999999999999999999999999999999999999999999999999999999999999988866 78899999999


Q ss_pred             cCCCCCCCC
Q 047128          251 AGNDLCGAP  259 (312)
Q Consensus       251 ~~n~l~~~p  259 (312)
                      ++|+++|..
T Consensus       712 s~N~l~g~i  720 (768)
T 3rgz_A          712 SNNNLSGPI  720 (768)
T ss_dssp             CSSEEEEEC
T ss_pred             cCCcccccC
Confidence            999888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=8e-31  Score=237.39  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             CCCCCcCEEECCCCccccc-ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcC--CCCCC
Q 047128            2 GSLTSLVWLRLGKNKLSVD-ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR--LCDLP   78 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~   78 (312)
                      +++++|++|++++|.+.+. .+..|.++++|++|++++|++++..|..+. ++++|++|++++|++++..+..  +..++
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcc
Confidence            4556666666666665432 244566666666666666666633344443 5666666666666666433333  66666


Q ss_pred             CCcEEEccCCCCCcccchh-hHhhcccccccccccccccccC
Q 047128           79 FLQILDIADTNLSGAIPNW-INNLTGMVTSCSFTRSVQQYLP  119 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~  119 (312)
                      +|++|++++|.+++..|.. +..+++|+.+++.+|.+....+
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            6666666666666555554 6666777777777666654433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=4.1e-30  Score=232.75  Aligned_cols=256  Identities=18%  Similarity=0.152  Sum_probs=180.8

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|++++..|..|..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            57999999999999888999999999999999999998777766555899999999999999988899999999999999


Q ss_pred             ccCCCCCcccchh--hHhhcccccccccccccccccCCCCccc---eeeeeeeeeeec----------------------
Q 047128           85 IADTNLSGAIPNW--INNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVSK----------------------  137 (312)
Q Consensus        85 l~~n~l~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------  137 (312)
                      +++|.+++..+..  +..+++|+.|++.+|.+....+..+...   ........+...                      
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998766654  8999999999999999887655432111   100000000000                      


Q ss_pred             --------------------------------Cc----ccchHH------------------------------------
Q 047128          138 --------------------------------GE----MVDYED------------------------------------  145 (312)
Q Consensus       138 --------------------------------~~----~~~~~~------------------------------------  145 (312)
                                                      ..    .+..+.                                    
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                            00    000000                                    


Q ss_pred             ---HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128          146 ---ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS  222 (312)
Q Consensus       146 ---~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  222 (312)
                         ..++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence               01345566666666665566666667777777777777765556666667777777777777765556666667777


Q ss_pred             CeEecccCcccccCCCC-CCCCCCccccccCCCCCCCCC
Q 047128          223 NHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       223 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      ++|++++|++++..|.. ..+++|+.+++++|.+.+.|.
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            77777777776654433 556666667777766665544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3e-31  Score=228.69  Aligned_cols=231  Identities=22%  Similarity=0.313  Sum_probs=199.3

Q ss_pred             CCCCCCcCEEECCC-CcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCC
Q 047128            1 MGSLTSLVWLRLGK-NKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF   79 (312)
Q Consensus         1 ~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   79 (312)
                      |+++++|++|++++ |.+++..|..+.++++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..+++
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            35689999999995 999888999999999999999999999988898887 8999999999999999899999999999


Q ss_pred             CcEEEccCCCCCcccchhhHhhc-ccccccccccccccccCCCCccc-eeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128           80 LQILDIADTNLSGAIPNWINNLT-GMVTSCSFTRSVQQYLPLPIDVG-VILVEKASVVSKGEMVDYEDILNLVRMIDISR  157 (312)
Q Consensus        80 L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  157 (312)
                      |++|++++|.+++..|..+..++ .|+.+++.+|.+.+..+..+... ........+...+..+..+..+++|++|++++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            99999999999989999999998 99999999999986665554432 12222222223334566677889999999999


Q ss_pred             CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       158 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      |.+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.-+
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            999976665 788999999999999999899999999999999999999999999986 789999999999998544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.4e-30  Score=225.82  Aligned_cols=226  Identities=16%  Similarity=0.182  Sum_probs=190.9

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      .++++.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+++|++|++++|+++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            478899999999998 67778888999999999999999 8998886 8999999999999999 788889999999999


Q ss_pred             EccCCCCCcccchhhHh---------hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEE
Q 047128           84 DIADTNLSGAIPNWINN---------LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID  154 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  154 (312)
                      ++++|++.+..|..+..         +++|+.|++.+|.+..                       ++..+..+++|++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----------------------LPASIANLQNLKSLK  212 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----------------------CCGGGGGCTTCCEEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----------------------chHhhcCCCCCCEEE
Confidence            99998877788876654         8888998888887752                       223345678899999


Q ss_pred             cCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          155 ISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       155 ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      +++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+
T Consensus       213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             ccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            9999999 466678899999999999998888889888999999999999998888899889999999999999999888


Q ss_pred             cCCCC-CCCCCCccccccCCCCCC
Q 047128          235 KIPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       235 ~~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      .+|.. ..++++..+++..+.+..
T Consensus       292 ~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          292 RLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             hccHHHhhccCceEEeCCHHHHHH
Confidence            77765 677777777777664443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=229.24  Aligned_cols=227  Identities=19%  Similarity=0.170  Sum_probs=182.7

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++++|+++...+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            56899999999999888889999999999999999999 66655555899999999999999966666799999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.++...+..|..+++|+.|++.+|.....++                     ...+..+++|++|++++|+++ .+
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------------------EGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------TTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---------------------cchhhcccccCeecCCCCcCc-cc
Confidence            99999997777789999999999998854332221                     123345677888888888888 44


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQ  243 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~  243 (312)
                      | .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.. ..+.
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            5 4677888888888888888777778888888888888888888777778888888888888888888766554 5677


Q ss_pred             CCccccccCCCC
Q 047128          244 SFDVSSFAGNDL  255 (312)
Q Consensus       244 ~l~~~~l~~n~l  255 (312)
                      +|+.+++++|++
T Consensus       280 ~L~~L~L~~Np~  291 (440)
T 3zyj_A          280 HLERIHLHHNPW  291 (440)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEcCCCCc
Confidence            788888888743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=9.2e-30  Score=230.31  Aligned_cols=227  Identities=19%  Similarity=0.157  Sum_probs=184.9

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      +++++|+|++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++++|+++...+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            47899999999999888889999999999999999999 55544444899999999999999966666789999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.++...+..|..+++|+.|++.+|+....++                     ...+..+++|++|++++|++++ +
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------EGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------TTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC---------------------hhhccCCCCCCEEECCCCcccc-c
Confidence            99999987767789999999999998854332221                     1233456778889999988884 4


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQ  243 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~  243 (312)
                      | .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++.++.. ..++
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            4 4778888999999999888777888888888999999999888777888888888999999999888766554 5677


Q ss_pred             CCccccccCCCC
Q 047128          244 SFDVSSFAGNDL  255 (312)
Q Consensus       244 ~l~~~~l~~n~l  255 (312)
                      +++.+++.+|++
T Consensus       291 ~L~~L~L~~Np~  302 (452)
T 3zyi_A          291 YLVELHLHHNPW  302 (452)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEccCCCc
Confidence            888888888843

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=6.7e-30  Score=232.77  Aligned_cols=255  Identities=21%  Similarity=0.181  Sum_probs=180.1

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|+|++|.+++..|..|.++++|++|++++|+++ .+|...+.++++|++|++++|++++..+..|..+++|
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            456777788888888777666777777778888888887777 6666554467777777777777776666667777777


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceee---------------------eeeeeee--
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVIL---------------------VEKASVV--  135 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~---------------------~~~~~~~--  135 (312)
                      ++|++++|.+....+..|..+++|+.|++.+|.+....+..+..  ....                     +..+...  
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            77777777776666666667777777777666655332110000  0000                     0000000  


Q ss_pred             -ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128          136 -SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       136 -~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                       ..+..+.......+|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|.
T Consensus       211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence             0011111112233788888888888855556788999999999999999877777788899999999999999988888


Q ss_pred             cccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128          215 SMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~  256 (312)
                      .|..+++|++|++++|++++..+.. ..+.+|+.+++.+|++.
T Consensus       291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            8999999999999999999766644 56788899999999653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=230.77  Aligned_cols=238  Identities=17%  Similarity=0.135  Sum_probs=195.1

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|+|++|.++...+..|.++++|++|++++|++.+..|..+ ..+++|++|++++|.+++..+..|..+++|
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCC
Confidence            5678999999999999997666778999999999999999995445555 489999999999999998888889999999


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ce--e-------------------eeeeeee---
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GV--I-------------------LVEKASV---  134 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~--~-------------------~~~~~~~---  134 (312)
                      ++|++++|.++...+..+..+++|+.+++.+|.+....+..+..  ..  .                   ....+..   
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            99999999999777778899999999999888876543322210  00  0                   1111111   


Q ss_pred             eecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128          135 VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE  214 (312)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  214 (312)
                      .........+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+.
T Consensus       235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence            11222234567789999999999999988888899999999999999999988889999999999999999999976677


Q ss_pred             cccCCCCCCeEecccCcccccCCCC
Q 047128          215 SMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      .|..+++|++|++++|++.|.++..
T Consensus       315 ~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          315 VFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             GBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             HcCCCcccCEEEccCCCccCccchH
Confidence            8889999999999999999876543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.7e-29  Score=214.90  Aligned_cols=235  Identities=20%  Similarity=0.216  Sum_probs=174.0

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            5678888888888866666788888888888888888844455555 7888888888888888 5665554  6788888


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.++...+..+..+++|+.+++.+|.+...                    +..+..+..+++|++|++++|.++ .+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~~~l~~L~~L~l~~n~l~-~l  186 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------------GIENGAFQGMKKLSYIRIADTNIT-TI  186 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------------GBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCcc--------------------CcChhhccCCCCcCEEECCCCccc-cC
Confidence            888888877777788888888888888876531                    111233455677888888888877 34


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQS  244 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  244 (312)
                      |..+.  ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++..+.....+++
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  264 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  264 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCC
Confidence            44332  7788888888888766677777788888888888888766666777788888888888888755555567777


Q ss_pred             CccccccCCCCCCCCCCCCCCC
Q 047128          245 FDVSSFAGNDLCGAPIPKNCTE  266 (312)
Q Consensus       245 l~~~~l~~n~l~~~p~~~~c~~  266 (312)
                      ++.+++++|.+.+.+....|..
T Consensus       265 L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          265 IQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCS
T ss_pred             cCEEECCCCcCCccChhhcCCc
Confidence            8888888887777776666643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=5.9e-29  Score=220.84  Aligned_cols=249  Identities=15%  Similarity=0.134  Sum_probs=154.8

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      .++++|++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|+
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            35778888888888888777778888888888888888888 55544434788888888888888844444467888888


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcccee---------------eeeeeeee-------ec--
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVI---------------LVEKASVV-------SK--  137 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~---------------~~~~~~~~-------~~--  137 (312)
                      +|++++|.+++..+..+..+++|+.|++.+|.+.......+.....               ....+...       ..  
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence            8888888888777777888888888888888776431111100000               00000000       00  


Q ss_pred             -------------CcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128          138 -------------GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS  204 (312)
Q Consensus       138 -------------~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  204 (312)
                                   -.....+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC
T ss_pred             cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC
Confidence                         000123344556666666666666555556666666666666666665 344444555666666666


Q ss_pred             CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCC
Q 047128          205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL  255 (312)
Q Consensus       205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l  255 (312)
                      +|+++ .+|..+..+++|++|++++|+++...  ...+++++.+++.+|++
T Consensus       304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             CCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence            66665 44544555666666666666665432  33455566666666644

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.5e-28  Score=213.40  Aligned_cols=226  Identities=15%  Similarity=0.182  Sum_probs=195.5

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..++   ++|++|++++|++++..+..+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccc
Confidence            567899999999999999888999999999999999999999 8888764   799999999999997766778999999


Q ss_pred             cEEEccCCCCCc--ccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128           81 QILDIADTNLSG--AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  158 (312)
Q Consensus        81 ~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  158 (312)
                      ++|++++|.+..  ..+..+..+++|+.+++.+|.+......                         ..++|++|++++|
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------------------------~~~~L~~L~l~~n  202 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------------------------LPPSLTELHLDGN  202 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------------------------CCTTCSEEECTTS
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------------------------ccccCCEEECCCC
Confidence            999999999864  6677899999999999999987743211                         0256999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                      .+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            999888899999999999999999999777778899999999999999999 8888899999999999999999976554


Q ss_pred             CC-------CCCCCccccccCCCCC
Q 047128          239 ST-------QLQSFDVSSFAGNDLC  256 (312)
Q Consensus       239 ~~-------~l~~l~~~~l~~n~l~  256 (312)
                      ..       ....+..+++.+|++.
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             hcCCcccccccccccceEeecCccc
Confidence            31       2355667778888654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.5e-29  Score=215.13  Aligned_cols=227  Identities=18%  Similarity=0.158  Sum_probs=183.5

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCC---ChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNI---PTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ++|++|++++|.++...+..|.++++|++|++++|.++ .+   |..+. .+++|++|++++|.++ .+|..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEEECCCCccc-cChhhcCCCCCCC
Confidence            57999999999998655566889999999999999988 43   56666 7899999999999998 5677788899999


Q ss_pred             EEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128           82 ILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        82 ~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      +|++++|.+++..+ ..+..+++|+.+++.+|.+....+.                      .+..+++|++|++++|.+
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----------------------TTTTCTTCCEEECTTCEE
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----------------------hcccCcCCCEEECCCCcc
Confidence            99999999885554 5788899999999999887654332                      234467788899999888


Q ss_pred             cc-cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          161 SG-KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       161 ~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      ++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            76 57778888889999999999888766778888888999999999888666667788888999999999888876644


Q ss_pred             -CCC-CCCccccccCCCCC
Q 047128          240 -TQL-QSFDVSSFAGNDLC  256 (312)
Q Consensus       240 -~~l-~~l~~~~l~~n~l~  256 (312)
                       ..+ .+++.+++++|++.
T Consensus       243 ~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEE
T ss_pred             HHhhhccCCEEEccCCCee
Confidence             445 47888888888554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=2.7e-29  Score=223.06  Aligned_cols=252  Identities=15%  Similarity=0.149  Sum_probs=184.6

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++++.|++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            588999999999998666666889999999999999999 6665444489999999999999998778889999999999


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchH----------------H
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYE----------------D  145 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------~  145 (312)
                      ++++|.++...+..+..+++|+.|++.+|.+....+..+..  ...................+                .
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            99999999555556799999999999999988765543332  11111111111100000000                0


Q ss_pred             ---------------------HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128          146 ---------------------ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS  204 (312)
Q Consensus       146 ---------------------~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  204 (312)
                                           ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence                                 112455555666665532  456777888888888888887777778888888888888


Q ss_pred             CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128          205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                      +|+++ .+|..+..+++|++|++++|++++.++....+++|+.+++++|.+.+.+
T Consensus       281 ~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             SSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence            88887 4566666778888888888888765555556777888888888776655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.8e-29  Score=214.78  Aligned_cols=210  Identities=18%  Similarity=0.140  Sum_probs=124.3

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-ccccCCcCCCCCCCCcEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L   83 (312)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|+ ++...|..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4566666666666655555566666666666666666632233333 56666666666665 554445556666666666


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.+++..+..+..+++|+.+++.+|.+....+                      ..+..+++|++|++++|++++.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----------------------DTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCEE
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----------------------hHhccCCCccEEECCCCccccc
Confidence            666666665555556666666666666665543221                      1123345566666666666654


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            54556666666666666666665556666666666666666666664444455666666666666666665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=3.8e-29  Score=234.29  Aligned_cols=256  Identities=21%  Similarity=0.209  Sum_probs=171.5

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcC-CCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR-LCDLPF   79 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~   79 (312)
                      |+++++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+. .+++|++|++++|.+.+.+|.. +..+++
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCc
Confidence            456788888899888887 6777788888888888888888843344444 7888888888888877555544 778888


Q ss_pred             CcEEEccCCCCCccc--chhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCc-ccchHHHhccccEEE
Q 047128           80 LQILDIADTNLSGAI--PNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGE-MVDYEDILNLVRMID  154 (312)
Q Consensus        80 L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~  154 (312)
                      |++|++++|.+++..  +..+..+++|+.+++.+|.+....+..+..  .............+. ....+..+++|++|+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            888888888887555  667778888888888888776654443321  111111111111111 222345567777777


Q ss_pred             cCCCcccccCChhhhcCCCCCEEEccCCCCccc---cChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCc
Q 047128          155 ISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR---IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN  231 (312)
Q Consensus       155 ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  231 (312)
                      +++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            777777766666777777777777777777642   22446667777777777777776666677777777777777777


Q ss_pred             ccccCCCC-CCCCCCccccccCCCCCCCC
Q 047128          232 LTGKIPSS-TQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       232 l~~~~~~~-~~l~~l~~~~l~~n~l~~~p  259 (312)
                      +++..|.. ..++.+ .+++++|.+.+.+
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~  539 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIIL  539 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccC
Confidence            77655433 455556 6666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=6.1e-29  Score=232.37  Aligned_cols=250  Identities=14%  Similarity=0.119  Sum_probs=172.6

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      +++++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|+
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            35788999999999998777778899999999999999988 55555444889999999999999855555578899999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccce------------------eee--------------
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV------------------ILV--------------  129 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~------------------~~~--------------  129 (312)
                      +|++++|.+++..|..+..+++|+.|++.+|.+.......+....                  ..+              
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~  230 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  230 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence            999999999888888888899999999988887653211111000                  000              


Q ss_pred             ----eeeeeee-cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128          130 ----EKASVVS-KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS  204 (312)
Q Consensus       130 ----~~~~~~~-~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  204 (312)
                          ..+.... .-..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECC
Confidence                0000000 0001233455667777777777777666777777777777777777776 355555666777777777


Q ss_pred             CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCC
Q 047128          205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~  256 (312)
                      +|.++ .+|..+..+++|+.|++++|++++..  ...+++|+.+++++|++.
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence            77777 56666666777777777777776543  345666777777777543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-28  Score=212.88  Aligned_cols=242  Identities=16%  Similarity=0.157  Sum_probs=190.4

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.+++..+..|.++++|++|++++|++++..|..+. .+++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            5789999999999877788899999999999999999944455554 8999999999999998 6666655  7899999


Q ss_pred             ccCCCCCcccchhhHhhccccccccccccccc--ccCCCCccceeeeeeeee---eecCcccchHHHhccccEEEcCCCc
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ--YLPLPIDVGVILVEKASV---VSKGEMVDYEDILNLVRMIDISRNN  159 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~L~ls~n~  159 (312)
                      +++|.++...+..+..+++|+.+++.+|.+..  ..+..+...  ....+..   .... ++..  ..++|++|++++|.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~-l~~~--~~~~L~~L~l~~n~  204 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG-IPKD--LPETLNELHLDHNK  204 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS-CCSS--SCSSCSCCBCCSSC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc-cCcc--ccCCCCEEECCCCc
Confidence            99999987767778999999999999998863  222222211  1111111   1111 1111  12689999999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      +++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence            99888889999999999999999999777778999999999999999999 88888999999999999999999765543


Q ss_pred             -CC------CCCCccccccCCCCC
Q 047128          240 -TQ------LQSFDVSSFAGNDLC  256 (312)
Q Consensus       240 -~~------l~~l~~~~l~~n~l~  256 (312)
                       ..      ...++.+++.+|++.
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ccccccccccccccceEeecCccc
Confidence             11      355777888888664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=7.2e-29  Score=215.09  Aligned_cols=205  Identities=19%  Similarity=0.191  Sum_probs=187.8

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCC-----
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCD-----   76 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----   76 (312)
                      .++++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|++.+.+|..+..     
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEEECCCCCCccccChhHhhccchh
Confidence            45889999999999999 88899999999999999999999 9999887 8999999999999888888887764     


Q ss_pred             ----CCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccE
Q 047128           77 ----LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM  152 (312)
Q Consensus        77 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  152 (312)
                          +++|++|++++|.++ .+|..+..+++|+.|++.+|.+...                       +..+..+++|++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-----------------------~~~l~~l~~L~~  233 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-----------------------GPAIHHLPKLEE  233 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-----------------------CGGGGGCTTCCE
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-----------------------chhhccCCCCCE
Confidence                999999999999999 8888999999999999999988742                       223456788999


Q ss_pred             EEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcc
Q 047128          153 IDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL  232 (312)
Q Consensus       153 L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  232 (312)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999998876


Q ss_pred             c
Q 047128          233 T  233 (312)
Q Consensus       233 ~  233 (312)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            5

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.8e-28  Score=220.62  Aligned_cols=212  Identities=19%  Similarity=0.188  Sum_probs=188.7

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|+|++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++...+..|..+++|
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence            568999999999999999888899999999999999999999 7887766689999999999999997767789999999


Q ss_pred             cEEEccC-CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128           81 QILDIAD-TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN  159 (312)
Q Consensus        81 ~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  159 (312)
                      ++|++++ |.+....+..+..+++|+.|++.+|.+.....                        +..+++|+.|++++|.
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------------------------LTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC------------------------CTTCTTCCEEECTTSC
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc------------------------ccccccccEEECcCCc
Confidence            9999999 45654455579999999999999998875311                        2346789999999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      +++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            998889999999999999999999998888889999999999999999997777788899999999999999988664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=219.74  Aligned_cols=212  Identities=18%  Similarity=0.187  Sum_probs=188.5

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|+|++|.++...+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++...+..|..+++|
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            567899999999999999888899999999999999999999 7887656689999999999999997777789999999


Q ss_pred             cEEEccCC-CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128           81 QILDIADT-NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN  159 (312)
Q Consensus        81 ~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  159 (312)
                      ++|++++| .+....+..|..+++|+.|++.+|.+.....                        +..+++|+.|++++|+
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------------------------LTPLIKLDELDLSGNH  218 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC------------------------CTTCSSCCEEECTTSC
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc------------------------cCCCcccCEEECCCCc
Confidence            99999995 5554455589999999999999998874321                        2346789999999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      +++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|.+.
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            998889999999999999999999998888889999999999999999997777788899999999999999998664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=9.3e-29  Score=212.43  Aligned_cols=214  Identities=22%  Similarity=0.226  Sum_probs=187.2

Q ss_pred             CCCCCCcCEEECCCCccccc--ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVD--ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDL   77 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l   77 (312)
                      |+++++|++|++++|.++..  .+..+.++++|++|++++|.+. .+|..+. .+++|++|++++|++++..+ ..+..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l  125 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSL  125 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhc
Confidence            46789999999999999743  3667788999999999999999 7888766 89999999999999996544 578999


Q ss_pred             CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128           78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR  157 (312)
Q Consensus        78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  157 (312)
                      ++|++|++++|.+.+..+..+..+++|+.|++.+|.+...                     ..+..+..+++|++|++++
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------FLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------EECSCCTTCTTCCEEECTT
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------cchhHHhhCcCCCEEECCC
Confidence            9999999999999988888999999999999999987641                     1122334578899999999


Q ss_pred             CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCC-CCCeEecccCcccccC
Q 047128          158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLT-FSNHLNLSNNNLTGKI  236 (312)
Q Consensus       158 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~  236 (312)
                      |++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++.+
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            999988899999999999999999999977677788999999999999999988898888885 9999999999999865


Q ss_pred             C
Q 047128          237 P  237 (312)
Q Consensus       237 ~  237 (312)
                      +
T Consensus       265 ~  265 (306)
T 2z66_A          265 E  265 (306)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=9.3e-28  Score=224.86  Aligned_cols=254  Identities=15%  Similarity=0.122  Sum_probs=132.3

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. ++++|++|++++|++++..+..+..+++|
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccCcccCCcchhccCCcc
Confidence            34566666777777666666666666666666666666666633344433 55666666666665554334444445555


Q ss_pred             cEEEccCCC------------------------CCcccchhhHhhcccc--cccccccccccccCCCCccce-e------
Q 047128           81 QILDIADTN------------------------LSGAIPNWINNLTGMV--TSCSFTRSVQQYLPLPIDVGV-I------  127 (312)
Q Consensus        81 ~~L~l~~n~------------------------l~~~~~~~~~~l~~L~--~l~l~~n~~~~~~~~~~~~~~-~------  127 (312)
                      ++|++++|.                        +++..+..+..+++|+  .+++.+|.+....+..+.... .      
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence            555555554                        4444444555555555  455555554443332222100 0      


Q ss_pred             -------------------------------------------eeeeeee---eecCcccchHHHhccccEEEcCCCccc
Q 047128          128 -------------------------------------------LVEKASV---VSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus       128 -------------------------------------------~~~~~~~---~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                                                                 ....+..   ...+..+..+..+++|++|++++|.++
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence                                                       0000000   001111223455666777777777766


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc-cccCCCCCCeEecccCcccccC---C
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTFSNHLNLSNNNLTGKI---P  237 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~---~  237 (312)
                       .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..   .
T Consensus       292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence             5565666666777777777766655455555556666666666655544433 3455555555555555555432   1


Q ss_pred             CCCCCCCCccccccCCCCC
Q 047128          238 SSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       238 ~~~~l~~l~~~~l~~n~l~  256 (312)
                      ....+++++.+++++|.+.
T Consensus       371 ~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCE
T ss_pred             hcccCCCCCEEECCCCcCC
Confidence            2234444555555555433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=240.87  Aligned_cols=228  Identities=15%  Similarity=0.109  Sum_probs=144.6

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+. ++++|++|++++|++++..|..|..+++|++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            6899999999999888888899999999999999999844454554 899999999999999877788899999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee---------------ee---eee-cCcccchHH
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK---------------AS---VVS-KGEMVDYED  145 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~---------------~~---~~~-~~~~~~~~~  145 (312)
                      +++|.+....+..+..+++|+.|++.+|.+......+. ........               +.   +.. .......+.
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~  423 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS-IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL  423 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCS-CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCC-cchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence            99999987777788899999999999988765322100 00000000               00   000 001111233


Q ss_pred             HhccccEEEcCCCcccccCCh-hhhcCCCCCEEEccCCCCc-----cccChhhcCCCCCcEEECCCccCCccCCccccCC
Q 047128          146 ILNLVRMIDISRNNFSGKIPL-EVTNLKALHSLNFSYNSFT-----RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSL  219 (312)
Q Consensus       146 ~~~~L~~L~ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l  219 (312)
                      .+++|+.|++++|++++..+. .+..+++|+.|++++|.++     +..+..+..+++|++|++++|++++..|..|..+
T Consensus       424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  503 (844)
T 3j0a_A          424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL  503 (844)
T ss_dssp             TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred             cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence            566777777777777643322 2233445555555555543     1222334444444444555444444444444444


Q ss_pred             CCCCeEecccCcccc
Q 047128          220 TFSNHLNLSNNNLTG  234 (312)
Q Consensus       220 ~~L~~L~l~~N~l~~  234 (312)
                      ++|+.|++++|++++
T Consensus       504 ~~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          504 TALRGLSLNSNRLTV  518 (844)
T ss_dssp             CSCSEEEEESCCCSS
T ss_pred             hhhheeECCCCCCCc
Confidence            444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-28  Score=212.98  Aligned_cols=251  Identities=18%  Similarity=0.179  Sum_probs=194.0

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      .+++.++++++.++ .+|..+  .++|++|++++|.+. .++...+.++++|++|++++|++++..|..|..+++|++|+
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            37999999999998 566655  368999999999999 56544344899999999999999988788999999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeee--cCcccchHHHhccccEEEcCCCcc
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVS--KGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      +++|.++ .+|..+.  ++|+.+++.+|.+....+..+..  .........+..  .+..+..+..+ +|++|++++|.+
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            9999998 5555443  79999999999987654332221  111111111111  11222333334 788888888888


Q ss_pred             cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCC
Q 047128          161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST  240 (312)
Q Consensus       161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~  240 (312)
                      ++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++..++...
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~  261 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP  261 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence            84 554433  789999999999997777889999999999999999997777789999999999999999996655567


Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCC
Q 047128          241 QLQSFDVSSFAGNDLCGAPIPKNCTE  266 (312)
Q Consensus       241 ~l~~l~~~~l~~n~l~~~p~~~~c~~  266 (312)
                      .+++|+.+++++|.+.+.+....|..
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             cCccCCEEECCCCCCCccChhHcccc
Confidence            88999999999999988887666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=6.2e-28  Score=204.29  Aligned_cols=211  Identities=22%  Similarity=0.193  Sum_probs=159.1

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      +|++|++++|.+++..+..|.++++|++|++++|+++ .++...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4888888888888766668888888888888888888 555544447888888888888888776677888888888888


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ++|.+.+..+..+..+++|+.|++.+|.+...                     ..+..+..+++|++|++++|++++..+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------KLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------------------CCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCcccee---------------------cCchhhccCCCCCEEECCCCCCCcCCH
Confidence            88888866666778888888888888776531                     123344557778888888888887666


Q ss_pred             hhhhcCCCCC----EEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          166 LEVTNLKALH----SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       166 ~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      ..+..+++|+    +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|++|++++|+++|.++..
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            6776666666    78888888874444433 4457888888888888555556677888888888888888776644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=6e-28  Score=222.15  Aligned_cols=114  Identities=24%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCc-cccCCCC
Q 047128          145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTF  221 (312)
Q Consensus       145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~  221 (312)
                      ..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            345678888888888887777777788888888888888874  4456677778888888888888764554 3556666


Q ss_pred             CCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128          222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                      |++|++++|++++..+... ..+++.+++++|.+...|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~~ip  437 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIP  437 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCCCCC
T ss_pred             CCEEECcCCCCCcchhhhh-cccCCEEECCCCcccccc
Confidence            6666666666654333221 134555555555544433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=231.19  Aligned_cols=110  Identities=20%  Similarity=0.236  Sum_probs=75.4

Q ss_pred             ccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128          148 NLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL  227 (312)
Q Consensus       148 ~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  227 (312)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            56777777777777666667777777777777777777666666777777777777777777666667777777777777


Q ss_pred             ccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128          228 SNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       228 ~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      ++|++++..+.. ..+++|+.+++++|.+.+
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            777776555432 445666666666665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=9.7e-28  Score=204.02  Aligned_cols=223  Identities=17%  Similarity=0.155  Sum_probs=192.4

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      ++++.+++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            57899999998 456544  468999999999999 66655445899999999999999988788999999999999999


Q ss_pred             CC-CCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           88 TN-LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        88 n~-l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      |. +....|..+..+++|+.|++.+|.+....+                      ..+..+++|++|++++|++++..+.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------GLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECH----------------------hHhhCCcCCCEEECCCCcccccCHh
Confidence            97 886778899999999999999998875433                      2334578899999999999977777


Q ss_pred             hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC-CCCCCCC
Q 047128          167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS-STQLQSF  245 (312)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l  245 (312)
                      .+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.++. ...++++
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            899999999999999999966666788999999999999999988899999999999999999999986654 3678889


Q ss_pred             ccccccCCCCC
Q 047128          246 DVSSFAGNDLC  256 (312)
Q Consensus       246 ~~~~l~~n~l~  256 (312)
                      +.+++++|++.
T Consensus       228 ~~L~l~~N~~~  238 (285)
T 1ozn_A          228 QYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEeccCCCcc
Confidence            99999999553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.5e-28  Score=231.19  Aligned_cols=244  Identities=17%  Similarity=0.152  Sum_probs=164.9

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCC-CCChhHHhcC------CCCcEEEccCCcccccCCc--
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVG-NIPTWIGERF------SRMVVLILRSNKFHGPLPT--   72 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~-~lp~~~~~~l------~~L~~L~L~~n~l~~~~~~--   72 (312)
                      ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++ .+      ++|++|++++|+++ .+|.  
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchh
Confidence            78999999999999988899999999999999999998 887 7888877 55      89999999999998 7887  


Q ss_pred             CCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---eeeeeeeeee--------------
Q 047128           73 RLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVV--------------  135 (312)
Q Consensus        73 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~--------------  135 (312)
                      .++.+++|++|++++|.+++.+| .+..+++|+.|++.+|.+.. ++..+...   ...+....+.              
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~  402 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence            78889999999999999887777 77888888888888887762 22222211   1111100000              


Q ss_pred             -----------ecCcccchHH-------HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhh-cCCC
Q 047128          136 -----------SKGEMVDYED-------ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESI-GVMT  196 (312)
Q Consensus       136 -----------~~~~~~~~~~-------~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~  196 (312)
                                 ..+..+..+.       .+++|++|++++|.++...+..+..+++|++|++++|+++ .+|... ....
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~  481 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN  481 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence                       1111111112       3345666666666666333334445677777777777776 444332 2222


Q ss_pred             -------CCcEEECCCccCCccCCcccc--CCCCCCeEecccCcccccCCCCCCCCCCccccccC
Q 047128          197 -------SLESIDFSTNQLSGEIPESMS--SLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAG  252 (312)
Q Consensus       197 -------~L~~L~l~~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~  252 (312)
                             +|++|++++|+++ .+|..+.  .+++|++|++++|++++.+.....+++|+.+++++
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence                   6777777777777 5666665  67777777777777776444445667777777743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.8e-27  Score=223.61  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=97.1

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|+|++|+|++..+.+|+++++|++|+|++|+++ .+|...+.++++|++|++++|++++..+..|+.+++|
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            577899999999999998777888999999999999999998 7887766689999999999999997666678999999


Q ss_pred             cEEEccCCCCCc-ccchhhHhhcccccccccccccc
Q 047128           81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQ  115 (312)
Q Consensus        81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~  115 (312)
                      ++|++++|.++. ..|..+..++.|+.|++.+|.+.
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            999999998875 35677888888888888777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.7e-27  Score=221.17  Aligned_cols=113  Identities=22%  Similarity=0.270  Sum_probs=72.5

Q ss_pred             HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCc-cccCCCC
Q 047128          145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTF  221 (312)
Q Consensus       145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~  221 (312)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            345678888888888887777778888888888888888874  2345567778888888888888764554 3555566


Q ss_pred             CCeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128          222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                      |++|++++|++++..+..-. .+++.+++++|.+...
T Consensus       430 L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~i  465 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSI  465 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCC
T ss_pred             CCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCccc
Confidence            66666666655543332110 3444444555544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=4.2e-27  Score=220.38  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+. ++++|++|++++|++++..+..++.+++|
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCC
Confidence            45778888888888888877777888888888888888888844455554 78888888888888876655677888888


Q ss_pred             cEEEccCCCCCc-ccchhhHhhccccccccccccccc
Q 047128           81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQQ  116 (312)
Q Consensus        81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~  116 (312)
                      ++|++++|.+++ .+|..+.++++|+.|++.+|.+..
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            888888888765 457778888888888777776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=215.17  Aligned_cols=228  Identities=14%  Similarity=0.131  Sum_probs=133.4

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      +|++|++++|.+++..+..+.++++|++|++++|++++..|..+. ++++|++|++++|++++..+..+..+++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            566666666666654444566666666666666666622223333 5666666666666666333233556666666666


Q ss_pred             cCCCCCcccc-hhhHhhcccccccccccc-cccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           86 ADTNLSGAIP-NWINNLTGMVTSCSFTRS-VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        86 ~~n~l~~~~~-~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++|+++...+ ..+..+++|+.+++.+|. +....                      +..+..+++|++|++++|.+++.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ----------------------RKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----------------------TTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccC----------------------HHHccCCCCCCEEECCCCCcCcc
Confidence            6666653222 255566666666666553 32221                      12233455566666666666655


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChh-hcCCCCCcEEECCCccCCcc-------------------------------
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPES-IGVMTSLESIDFSTNQLSGE-------------------------------  211 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~-------------------------------  211 (312)
                      .|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++.                               
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence            5566666666666666666654 33332 23455666666666665532                               


Q ss_pred             CCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128          212 IPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       212 ~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      +|+.+..+++|++|++++|+++..++.. ..+++++.+++++|++.+
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            3445667888888888888888655554 677888888888886543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=1.1e-27  Score=225.16  Aligned_cols=253  Identities=16%  Similarity=0.213  Sum_probs=159.3

Q ss_pred             CCCCCCcCEEECCCCc-ccc-cccccccCC------CCCCEEECcCCCCCCCCCh--hHHhcCCCCcEEEccCCcccccC
Q 047128            1 MGSLTSLVWLRLGKNK-LSV-DILVSLKNC------TTLESLDVGENEFVGNIPT--WIGERFSRMVVLILRSNKFHGPL   70 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l------~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~L~~n~l~~~~   70 (312)
                      |+++++|++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|.  .+. .+++|++|++++|++++.+
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEEC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccch
Confidence            3456666666666666 665 556555544      66666666666666 6665  444 5666666666666666555


Q ss_pred             CcCCCCCCCCcEEEccCCCCCcccchhhHhhcc-cccccccccccc-------------------------cccCCCCc-
Q 047128           71 PTRLCDLPFLQILDIADTNLSGAIPNWINNLTG-MVTSCSFTRSVQ-------------------------QYLPLPID-  123 (312)
Q Consensus        71 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~~~-------------------------~~~~~~~~-  123 (312)
                      | .+..+++|++|++++|.++ .+|..+..+++ |+.|++.+|.+.                         +..+..+. 
T Consensus       347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            5 5555555555555555555 44444555555 555555555444                         33322222 


Q ss_pred             ------c--ceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh-hhhcCC-------CCCEEEccCCCCccc
Q 047128          124 ------V--GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL-EVTNLK-------ALHSLNFSYNSFTRR  187 (312)
Q Consensus       124 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~-~~~~l~-------~L~~L~Ls~n~l~~~  187 (312)
                            .  ....+....+.........+..+++|++|++++|+++ .+|. .+....       +|++|++++|+++ .
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence                  0  0111111111122222334556788999999999998 4544 333332       8999999999988 7


Q ss_pred             cChhhc--CCCCCcEEECCCccCCccCCccccCCCCCCeEec------ccCcccccCCCC-CCCCCCccccccCCCCCCC
Q 047128          188 IPESIG--VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL------SNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       188 ~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~  258 (312)
                      +|..+.  .+++|++|++++|++++ +|..+..+++|++|++      ++|++.+.+|.. ..+++|+.+++++|.+...
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i  581 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV  581 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc
Confidence            777776  88899999999999985 8888888899999988      456677766644 6788888888888888555


Q ss_pred             CC
Q 047128          259 PI  260 (312)
Q Consensus       259 p~  260 (312)
                      |.
T Consensus       582 p~  583 (636)
T 4eco_A          582 NE  583 (636)
T ss_dssp             CS
T ss_pred             CH
Confidence            54

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=2.3e-27  Score=225.02  Aligned_cols=110  Identities=18%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. ++++|++|++++|+++...+..|+.+++|++|++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            455555555555544444455555555555555555522233332 4555555555555555332233555555555555


Q ss_pred             cCCCCCcccchhhHhhccccccccccccccc
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ  116 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~  116 (312)
                      ++|.+++..|..+..+++|+.|++.+|.+..
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  135 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS  135 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccc
Confidence            5555544444445555555555555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=4e-27  Score=217.99  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=94.6

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccc-cCCcCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG-PLPTRLCDLPF   79 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~   79 (312)
                      |+++++|++|++++|++++..|..|.++++|++|++++|+++ .++...+.++++|++|++++|++++ ..|..+..+++
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            467888999999999998777788889999999999999998 5565534488999999999999885 34667888899


Q ss_pred             CcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCC
Q 047128           80 LQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPL  120 (312)
Q Consensus        80 L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~  120 (312)
                      |++|++++|...+..| ..+..+++|+.|++.+|.+....+.
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            9999999887433444 5788888889888888887765443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-26  Score=195.35  Aligned_cols=207  Identities=18%  Similarity=0.205  Sum_probs=171.1

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ..++++++++.++ .+|..+.  +++++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4788999999998 4665553  67999999999999 677654458999999999999999655556788999999999


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ++|.++...+..+..+++|+.|++.+|.+....+                      ..+..+++|++|++++|.+++..+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------RVFDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCH----------------------HHhCcCcCCCEEECCCCcCCccCH
Confidence            9999997777788889999999999888765432                      223457789999999999997666


Q ss_pred             hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                      ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            6788999999999999999866666788899999999999999966666788899999999999999887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=209.59  Aligned_cols=234  Identities=19%  Similarity=0.196  Sum_probs=181.9

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc--CCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT--RLCDLP   78 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~   78 (312)
                      |.++++|++|++++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++. +|.  .+..++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~  149 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLT  149 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCC
Confidence            567899999999999999888889999999999999999999 8888766689999999999999994 554  789999


Q ss_pred             CCcEEEccCC-CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeee---ecCcccchHHHhccccEEE
Q 047128           79 FLQILDIADT-NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVV---SKGEMVDYEDILNLVRMID  154 (312)
Q Consensus        79 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~  154 (312)
                      +|++|++++| .+....+..+..+++|+.+++.+|.+....+..+.... ....+...   ........+..+++|+.|+
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEE
Confidence            9999999999 57766678899999999999999998876554443211 11111111   1111222344567788888


Q ss_pred             cCCCcccccCChhhh---cCCCCCEEEccCCCCcc----ccChhhcCCCCCcEEECCCccCCccCCcc-ccCCCCCCeEe
Q 047128          155 ISRNNFSGKIPLEVT---NLKALHSLNFSYNSFTR----RIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFSNHLN  226 (312)
Q Consensus       155 ls~n~i~~~~p~~~~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~  226 (312)
                      +++|.+++..+..+.   ....++.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. |..+++|++|+
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence            888888765444332   35667777777777764    36777889999999999999999 56655 58999999999


Q ss_pred             cccCcccccCCC
Q 047128          227 LSNNNLTGKIPS  238 (312)
Q Consensus       227 l~~N~l~~~~~~  238 (312)
                      +++|+++|.+|.
T Consensus       308 L~~N~~~~~~~~  319 (353)
T 2z80_A          308 LHTNPWDCSCPR  319 (353)
T ss_dssp             CCSSCBCCCHHH
T ss_pred             eeCCCccCcCCC
Confidence            999999987763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=3e-27  Score=220.93  Aligned_cols=253  Identities=15%  Similarity=0.152  Sum_probs=191.4

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++++.+++++|.++...+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+++..|..|+.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            578899999999998766677899999999999999999 5554333489999999999999998888889999999999


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchH-----------------
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYE-----------------  144 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------  144 (312)
                      ++++|.++...+..|..+++|+.|++.+|.+....+..+..  ....+....+...+.....+                 
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            99999999666667899999999999999998766544432  11111111110000000000                 


Q ss_pred             --------------------HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128          145 --------------------DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS  204 (312)
Q Consensus       145 --------------------~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  204 (312)
                                          ...++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                                011346666666666664  3567788889999999999887778888888999999999


Q ss_pred             CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128          205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      +|.+++ +|..+..+++|+.|++++|++++.++....+++|+.+++++|.+.+.|.
T Consensus       287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~  341 (597)
T 3oja_B          287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL  341 (597)
T ss_dssp             TSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred             CCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh
Confidence            999884 5666777888999999999888655555667888888888887776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=2.1e-26  Score=218.53  Aligned_cols=255  Identities=15%  Similarity=0.081  Sum_probs=179.0

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCC-CCChhHHhc--CCCCcEEEccCCcccccCCcCCCCCC
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG-NIPTWIGER--FSRMVVLILRSNKFHGPLPTRLCDLP   78 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~   78 (312)
                      ..+++|++|++++|.+++..+..|.++++|++|++++|.+.. .++...+..  .++|+.|++++|++++..|..+..++
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            456778888888888877777778888888888888876432 333333222  25788888888888877788888899


Q ss_pred             CCcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccc--eeeeeeee--eeecCcccchHHHhccccEE
Q 047128           79 FLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVG--VILVEKAS--VVSKGEMVDYEDILNLVRMI  153 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~L~~L  153 (312)
                      +|++|++++|.+.+.+| ..+..+++|+.+++.+|.+....+..+...  ........  ....+..+..+..+++|+.|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            99999999998876555 678888899999998888776544333211  11111111  11113345566677888888


Q ss_pred             EcCCCcccccCChhhhcCCCCCEEEccCCCCccccC--------hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128          154 DISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP--------ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL  225 (312)
Q Consensus       154 ~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  225 (312)
                      ++++|++++..+..+..+++|++|++++|++++..+        ..+..+++|++|++++|+++...+..|..+++|++|
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            888888887777778888888888888888874321        225677888888888888884334467788888888


Q ss_pred             ecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128          226 NLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       226 ~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~  256 (312)
                      ++++|++++.++.. ..+.+|+.+++++|.+.
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            88888888766554 56677777777776443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=4e-27  Score=226.28  Aligned_cols=209  Identities=19%  Similarity=0.246  Sum_probs=137.5

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEEC-cCCCCCCC---------------------------------------
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDV-GENEFVGN---------------------------------------   44 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l-~~n~l~~~---------------------------------------   44 (312)
                      .+++.|+|+++.+++.+|..++++++|++|+| ++|.+.|.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888999999999999999999999999999 77644322                                       


Q ss_pred             -------------------------------------CChhHHhcCCCCcEEEccCCcccc-----------------cC
Q 047128           45 -------------------------------------IPTWIGERFSRMVVLILRSNKFHG-----------------PL   70 (312)
Q Consensus        45 -------------------------------------lp~~~~~~l~~L~~L~L~~n~l~~-----------------~~   70 (312)
                                                           +|..+. ++++|+.|++++|++++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                 777776 89999999999999997                 38


Q ss_pred             CcCCC--CCCCCcEEEccCCCCCcccchhhHhhcccccccccccc-ccc-ccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128           71 PTRLC--DLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRS-VQQ-YLPLPIDVGVILVEKASVVSKGEMVDYEDI  146 (312)
Q Consensus        71 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      |..++  .+++|++|++++|.+.+.+|..+..+++|+.|++.+|. +.+ .++..+....               ..+..
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---------------~~~~~  546 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA---------------DDEDT  546 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------HCTTT
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---------------hcccc
Confidence            88887  99999999999999988999999999999999999997 654 3322111000               00011


Q ss_pred             hccccEEEcCCCcccccCCh--hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC-CC
Q 047128          147 LNLVRMIDISRNNFSGKIPL--EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF-SN  223 (312)
Q Consensus       147 ~~~L~~L~ls~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~  223 (312)
                      +++|+.|++++|.++ .+|.  .+.++++|++|++++|+++ .+| .++.+++|+.|++++|+++ .+|..+..+++ |+
T Consensus       547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence            124444444444444 3444  4444444444444444444 444 3444444444444444444 44444444444 44


Q ss_pred             eEecccCccc
Q 047128          224 HLNLSNNNLT  233 (312)
Q Consensus       224 ~L~l~~N~l~  233 (312)
                      +|++++|+++
T Consensus       623 ~L~Ls~N~L~  632 (876)
T 4ecn_A          623 GLGFSHNKLK  632 (876)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECcCCCCC
Confidence            4444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.6e-27  Score=203.99  Aligned_cols=201  Identities=18%  Similarity=0.243  Sum_probs=106.7

Q ss_pred             CCCcCEEECCCCcccccccccc--cCCCCCCEEECcCCCCCCCCChhHHhcC-----CCCcEEEccCCcccccCCcCCCC
Q 047128            4 LTSLVWLRLGKNKLSVDILVSL--KNCTTLESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTRLCD   76 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~l~~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~   76 (312)
                      +++|++|++++|.+++..|..+  .++++|++|++++|+++ .+|..+. .+     ++|++|++++|++++..|..++.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            5556666666666655555544  55666666666666665 3354443 34     56666666666666544455666


Q ss_pred             CCCCcEEEccCCCCCccc--chhh--HhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccE
Q 047128           77 LPFLQILDIADTNLSGAI--PNWI--NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM  152 (312)
Q Consensus        77 l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  152 (312)
                      +++|++|++++|++.+..  +..+  ..++                                              +|++
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~----------------------------------------------~L~~  205 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFP----------------------------------------------TLQV  205 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCT----------------------------------------------TCCE
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCC----------------------------------------------CCCE
Confidence            666666666666554321  2222  3344                                              4555


Q ss_pred             EEcCCCccccc---CChhhhcCCCCCEEEccCCCCccccC-hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          153 IDISRNNFSGK---IPLEVTNLKALHSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       153 L~ls~n~i~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      |++++|++++.   ....+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus       206 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls  282 (312)
T 1wwl_A          206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS  282 (312)
T ss_dssp             EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECC
T ss_pred             EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECC
Confidence            66666555521   11223345566666666666554433 22334555666666666665 4554443  555566666


Q ss_pred             cCcccccCCCCCCCCCCccccccCCCCC
Q 047128          229 NNNLTGKIPSSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       229 ~N~l~~~~~~~~~l~~l~~~~l~~n~l~  256 (312)
                      +|++++. |....+++++.+++++|++.
T Consensus       283 ~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          283 YNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            6666554 33445555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=4.5e-26  Score=192.22  Aligned_cols=200  Identities=22%  Similarity=0.235  Sum_probs=173.2

Q ss_pred             CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128           30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS  109 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  109 (312)
                      ..+.++++++.++ .+|..+.   ++++.|++++|+++...+..|..+++|++|++++|.++...+..|..+++|+.|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            5789999999999 8998653   68999999999999766678999999999999999999666667889999999999


Q ss_pred             cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128          110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP  189 (312)
Q Consensus       110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  189 (312)
                      .+|.+....+                      ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus        93 ~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           93 TDNKLQALPI----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CSSCCCCCCT----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCcCCH----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence            9998865332                      233457789999999999998888889999999999999999996666


Q ss_pred             hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCC
Q 047128          190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDL  255 (312)
Q Consensus       190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l  255 (312)
                      ..+..+++|++|++++|++++..+..|..+++|++|++++|++++.++.. ..+++++.+++.+|++
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            66889999999999999999766677889999999999999999876653 6688899999999854

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.8e-26  Score=196.51  Aligned_cols=205  Identities=16%  Similarity=0.147  Sum_probs=171.0

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ++++++++++++++.++ .+|..+.  +++++|++++|.++ .++...+..+++|+.|++++|.+++. +. ...+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence            46889999999999998 4565553  68999999999999 55544444899999999999999954 33 37899999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      +|++++|.++ .+|..+..+++|+.|++.+|.+....+                      ..+..+++|++|++++|+++
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~----------------------~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL----------------------GALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS----------------------STTTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH----------------------HHHcCCCCCCEEECCCCCCC
Confidence            9999999998 778888899999999999998875432                      23345778999999999999


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI  236 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  236 (312)
                      +..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.|.+
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            777777889999999999999998555566788999999999999999 77887888889999999999998765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=5.3e-27  Score=219.72  Aligned_cols=229  Identities=14%  Similarity=0.048  Sum_probs=147.7

Q ss_pred             CCCCCcCEEECCCCcccccccc--------------------cccCCCCCCEEECcCCCCCCC--CChhHHhcCCCCcEE
Q 047128            2 GSLTSLVWLRLGKNKLSVDILV--------------------SLKNCTTLESLDVGENEFVGN--IPTWIGERFSRMVVL   59 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~--lp~~~~~~l~~L~~L   59 (312)
                      ..+++|++|++++|.++ .+|.                    .+..+++|++|++++|.+++.  +|..+. .+++|++|
T Consensus       304 ~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L  381 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHL  381 (606)
T ss_dssp             CTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEE
T ss_pred             cccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEe
Confidence            34556666666666663 4442                    233444444444444444421  133333 45555555


Q ss_pred             EccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecC
Q 047128           60 ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKG  138 (312)
Q Consensus        60 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (312)
                      ++++|.++ .+|..+..+++|++|++++|.+.+..| ..+..+++|+.+++.+|.+...                     
T Consensus       382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------  439 (606)
T 3vq2_A          382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID---------------------  439 (606)
T ss_dssp             ECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC---------------------
T ss_pred             ECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc---------------------
Confidence            55555554 233445555555555555555544444 3445555555555555554432                     


Q ss_pred             cccchHHHhccccEEEcCCCcccc-cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128          139 EMVDYEDILNLVRMIDISRNNFSG-KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMS  217 (312)
Q Consensus       139 ~~~~~~~~~~~L~~L~ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~  217 (312)
                       .+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.
T Consensus       440 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          440 -FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             -CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             -chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence             23334557788889999988886 3677888888999999999988877788888888899999999988877788888


Q ss_pred             CCCCCCeEecccCcccccCCCCCCCC-CCccccccCCCC
Q 047128          218 SLTFSNHLNLSNNNLTGKIPSSTQLQ-SFDVSSFAGNDL  255 (312)
Q Consensus       218 ~l~~L~~L~l~~N~l~~~~~~~~~l~-~l~~~~l~~n~l  255 (312)
                      .+++|++|++++|+++..++....+. +++.+++.+|++
T Consensus       519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            88889999999998886555555554 578888888854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=216.24  Aligned_cols=89  Identities=24%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCc--cCCccccCCCCCCeEecccCcccccCCC--CCCCCC
Q 047128          169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSNHLNLSNNNLTGKIPS--STQLQS  244 (312)
Q Consensus       169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~--~~~l~~  244 (312)
                      ..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.  ...+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567888999999999887788888888999999999999985  4566788889999999999999874442  356788


Q ss_pred             CccccccCCCCCC
Q 047128          245 FDVSSFAGNDLCG  257 (312)
Q Consensus       245 l~~~~l~~n~l~~  257 (312)
                      ++.+++++|.+.+
T Consensus       401 L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          401 LLSLNMSSNILTD  413 (520)
T ss_dssp             CCEEECCSSCCCG
T ss_pred             CCEEECcCCCCCc
Confidence            8888999987754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.2e-26  Score=215.57  Aligned_cols=250  Identities=16%  Similarity=0.134  Sum_probs=174.2

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.+++..+..|.++++|++|++++|++++..|..+. ++++|++|++++|+++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            5688888888888876677888888888888888888833344444 7888888888888887 56655  678888888


Q ss_pred             ccCCCCCcc-cchhhHhhcccccccccccccccccCCCCccc---------------------ee---------------
Q 047128           85 IADTNLSGA-IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---------------------VI---------------  127 (312)
Q Consensus        85 l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---------------------~~---------------  127 (312)
                      +++|.+++. .|..+..+++|+.|++.+|.+....-......                     ..               
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  207 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS  207 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence            888888753 35778888888888888777653110000000                     00               


Q ss_pred             --------------eeeeeeeeecC--------------------------------cccch--HHHhccccEEEcCCCc
Q 047128          128 --------------LVEKASVVSKG--------------------------------EMVDY--EDILNLVRMIDISRNN  159 (312)
Q Consensus       128 --------------~~~~~~~~~~~--------------------------------~~~~~--~~~~~~L~~L~ls~n~  159 (312)
                                    ....+......                                .....  ....++|++|++++|.
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence                          00000000000                                00000  0011267777887777


Q ss_pred             ccccCChhh-----------------------------------------------------hcCCCCCEEEccCCCCcc
Q 047128          160 FSGKIPLEV-----------------------------------------------------TNLKALHSLNFSYNSFTR  186 (312)
Q Consensus       160 i~~~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~n~l~~  186 (312)
                      +++.+|..+                                                     ..+++|++|++++|++++
T Consensus       288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred             eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence            776665543                                                     567899999999999998


Q ss_pred             ccChhhcCCCCCcEEECCCccCCc--cCCccccCCCCCCeEecccCcccccCCC--CCCCCCCccccccCCCCCCC
Q 047128          187 RIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSNHLNLSNNNLTGKIPS--STQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       187 ~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~--~~~l~~l~~~~l~~n~l~~~  258 (312)
                      ..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.  ...+.+++.+++++|.+.+.
T Consensus       368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS  443 (562)
T ss_dssp             TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred             chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence            788889999999999999999995  2356788999999999999999984543  36778899999999988653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=1.8e-26  Score=192.53  Aligned_cols=214  Identities=17%  Similarity=0.177  Sum_probs=157.7

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ..++++++++.++ .+|..+.  +++++|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567888888877 4555443  57788888888887 444433337888888888888888766666788888888888


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ++|.++...+..+..+                                              ++|++|++++|++++..+
T Consensus        91 ~~n~l~~~~~~~~~~l----------------------------------------------~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           91 ANNQLASLPLGVFDHL----------------------------------------------TQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             TTSCCCCCCTTTTTTC----------------------------------------------TTCCEEECCSSCCCCCCT
T ss_pred             CCCcccccChhHhccc----------------------------------------------CCCCEEEcCCCcCCCcCh
Confidence            8888775544444433                                              448889999999997777


Q ss_pred             hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCC---
Q 047128          166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL---  242 (312)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l---  242 (312)
                      ..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.......+   
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~  204 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW  204 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence            77899999999999999999666667899999999999999999777778999999999999999999874333111   


Q ss_pred             ---CCCccccccCCCCCCCCCCCCCCCCCC
Q 047128          243 ---QSFDVSSFAGNDLCGAPIPKNCTENVS  269 (312)
Q Consensus       243 ---~~l~~~~l~~n~l~~~p~~~~c~~~~~  269 (312)
                         ......+..++.+++.|....|..+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  234 (251)
T 3m19_A          205 IRENSNKVKDGTGQNLHESPDGVTCSDGKV  234 (251)
T ss_dssp             HHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred             HHhcccceeeccCcccccCCCcCccCCCcE
Confidence               112233455677888888888887643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6.5e-27  Score=201.94  Aligned_cols=218  Identities=22%  Similarity=0.192  Sum_probs=153.7

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++|++|++++|.+++..|..|.++++|++|++++|.+++ ++. + ..+++|++|++++|++++. +    ..++|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~-~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-L-ESLSTLRTLDLNNNYVQEL-L----VGPSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-E-TTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-h-hhcCCCCEEECcCCccccc-c----CCCCcCE
Confidence            45688888998888887777788888888999998888874 333 3 3788888888888888743 2    2377888


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      |++++|.+++..+..   +++|+.+++.+|.+....+.                      .+..+++|++|++++|.+++
T Consensus       104 L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A          104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL----------------------DEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             EECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB----------------------CTGGGSSEEEEECTTSCCCE
T ss_pred             EECCCCccCCcCccc---cCCCCEEECCCCCCCCccch----------------------hhhccCCCCEEECCCCCCCc
Confidence            888888887554433   56778888888877654332                      23346667777777777776


Q ss_pred             cCChhh-hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128          163 KIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ  241 (312)
Q Consensus       163 ~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~  241 (312)
                      ..+..+ ..+++|++|++++|.+++ ++.. ..+++|++|++++|++++ +|..+..+++|++|++++|+++..++....
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence            655555 366777777777777763 3332 246777777777777773 444467777777777777777765555566


Q ss_pred             CCCCccccccCCCCC
Q 047128          242 LQSFDVSSFAGNDLC  256 (312)
Q Consensus       242 l~~l~~~~l~~n~l~  256 (312)
                      +++++.+++++|.+.
T Consensus       236 l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          236 SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECTTCCCB
T ss_pred             CCCCCEEEccCCCcc
Confidence            677777777777554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=4.4e-26  Score=219.05  Aligned_cols=251  Identities=16%  Similarity=0.176  Sum_probs=156.9

Q ss_pred             CCCCCCcCEEECCCCc-ccc-cccccccCC-------CCCCEEECcCCCCCCCCCh--hHHhcCCCCcEEEccCCccccc
Q 047128            1 MGSLTSLVWLRLGKNK-LSV-DILVSLKNC-------TTLESLDVGENEFVGNIPT--WIGERFSRMVVLILRSNKFHGP   69 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~L~~n~l~~~   69 (312)
                      |+++++|++|+|++|+ +++ .+|..+.++       ++|++|++++|.+. .+|.  .+. .+++|+.|++++|+++ .
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~  587 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-H  587 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-B
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-c
Confidence            3467788888888887 776 566544443       47888888888887 7777  555 7788888888888877 6


Q ss_pred             CCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc-cccccccccccccccCCCCccc----eeeeeeeee----------
Q 047128           70 LPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG-MVTSCSFTRSVQQYLPLPIDVG----VILVEKASV----------  134 (312)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~~~~~~~~~~~~~----~~~~~~~~~----------  134 (312)
                      +| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++.+|.+.. ++..+...    ...+....+          
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccch
Confidence            66 6777788888888888777 67777777777 7777777777662 22221110    111110000          


Q ss_pred             -------------------eecCcccchHHHhccccEEEcCCCcccccCChhhhc--------CCCCCEEEccCCCCccc
Q 047128          135 -------------------VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN--------LKALHSLNFSYNSFTRR  187 (312)
Q Consensus       135 -------------------~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~--------l~~L~~L~Ls~n~l~~~  187 (312)
                                         .........+..+++|+.|++++|+++ .+|..+..        +++|++|+|++|+++ .
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~  742 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S  742 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred             hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence                               011111122334566777777777766 44433322        126777777777776 5


Q ss_pred             cChhhc--CCCCCcEEECCCccCCccCCccccCCCCCCeEeccc------CcccccCCCC-CCCCCCccccccCCCCCCC
Q 047128          188 IPESIG--VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN------NNLTGKIPSS-TQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       188 ~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~  258 (312)
                      +|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++      |++.+.+|.. ..+++|+.+++++|.+...
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence            666665  66777777777777774 566666777777777755      5555555533 5566777777777766434


Q ss_pred             CC
Q 047128          259 PI  260 (312)
Q Consensus       259 p~  260 (312)
                      |.
T Consensus       822 p~  823 (876)
T 4ecn_A          822 DE  823 (876)
T ss_dssp             CS
T ss_pred             CH
Confidence            43

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=6.3e-26  Score=198.12  Aligned_cols=244  Identities=22%  Similarity=0.305  Sum_probs=169.7

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|++++|.++. + ..+.++++|++|++++|.+. .++. +. .+++|+.|++++|...... ..+..+++|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~-~~~~~l~~L  157 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGL  157 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCC-GGGTTCTTC
T ss_pred             hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCcccc-cchhhCCCC
Confidence            4678999999999999984 3 36899999999999999998 6766 43 7999999999999766344 448889999


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      ++|++++|.+....+  +..+++|+.+++.+|.+........................  ...+..+++|++|++++|++
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCC
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC--CchhhcCCcCCEEEccCCcc
Confidence            999999998875443  78889999999998887754431111111111111111111  11155667788888888877


Q ss_pred             cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-
Q 047128          161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-  239 (312)
Q Consensus       161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-  239 (312)
                      ++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|++++ + +.+..+++|++|++++|++++..+.. 
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence            74333  6777778888888777763 3 346677777777777777774 3 34667777777777777776654432 


Q ss_pred             CCCCCCccccccCCCCCCCCC
Q 047128          240 TQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       240 ~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      ..+++++.+++++|.+.+.+.
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG
T ss_pred             hccccCCEEEccCCccccccC
Confidence            456777777777777666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-26  Score=211.44  Aligned_cols=218  Identities=21%  Similarity=0.178  Sum_probs=177.3

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++|++|+|++|.+++..|..|.++++|++|++++|.+++..|  +. .+++|++|++++|.+++. |.    .++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l-~~----~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQEL-LV----GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEE-EE----CTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCC-CC----CCCcCE
Confidence            35689999999999998888899999999999999999985444  43 899999999999999843 32    388999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      |++++|.+++..+.   .+++|+.|++.+|.+....+                      ..+..+++|+.|++++|.+++
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD----------------------LDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG----------------------BCGGGGSSEEEEECTTSCCCE
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc----------------------hhhcCCCCCCEEECCCCCCCC
Confidence            99999999866554   45789999999998875433                      233457789999999999998


Q ss_pred             cCChhhh-cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128          163 KIPLEVT-NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ  241 (312)
Q Consensus       163 ~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~  241 (312)
                      ..|..+. .+++|++|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|++++.++....
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~  235 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             cChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence            7887775 789999999999999854 33 3358899999999999995 444588889999999999999987666677


Q ss_pred             CCCCccccccCCCCC
Q 047128          242 LQSFDVSSFAGNDLC  256 (312)
Q Consensus       242 l~~l~~~~l~~n~l~  256 (312)
                      +++++.+++.+|.+.
T Consensus       236 l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            888888999998665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=3.2e-26  Score=193.34  Aligned_cols=197  Identities=18%  Similarity=0.215  Sum_probs=124.4

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++|+.|++++|.++. . ..+..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3455555555555542 2 23455555555555555555 332 222 45555555555555554444445555555555


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.+++..+..+..                                              +++|++|++++|.+++.
T Consensus       115 ~L~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDK----------------------------------------------LTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             ECTTSCCCCCCTTTTTT----------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred             ECCCCcCCccCHHHhcc----------------------------------------------CCCCCEEECCCCccCcc
Confidence            55555555433333333                                              44577888888888866


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCC
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQ  243 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~  243 (312)
                      .+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|      
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------  222 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------  222 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------
T ss_pred             CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------
Confidence            66667788888888888888886666667788888888888888887666677788888888888888887655      


Q ss_pred             CCccccccCCCCCC
Q 047128          244 SFDVSSFAGNDLCG  257 (312)
Q Consensus       244 ~l~~~~l~~n~l~~  257 (312)
                      .++.+++..|.+.|
T Consensus       223 ~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          223 GIRYLSEWINKHSG  236 (272)
T ss_dssp             TTHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHhCCC
Confidence            34444444454443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.2e-25  Score=190.16  Aligned_cols=221  Identities=16%  Similarity=0.163  Sum_probs=182.2

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT   88 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n   88 (312)
                      ..+-.+..++ .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4556666665 4665553  57999999999999 666544448999999999999999777778999999999999999


Q ss_pred             CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc-CChh
Q 047128           89 NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK-IPLE  167 (312)
Q Consensus        89 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~p~~  167 (312)
                      .+++..+..+..+++|+.+++.+|.+....+..                      +..+++|++|++++|.+++. +|..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP----------------------IGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCC----------------------CTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchh----------------------cccCCCCCEEECcCCccceecCchh
Confidence            999888889999999999999999887543322                      23477899999999999864 5889


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCc----EEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCC
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQL  242 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l  242 (312)
                      +..+++|++|++++|++++..+..+..+++|+    +|++++|.+++..+..+ ...+|++|++++|++++.++.. ..+
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhccc
Confidence            99999999999999999976667777666676    99999999996555544 4458999999999999877654 678


Q ss_pred             CCCccccccCCCCC
Q 047128          243 QSFDVSSFAGNDLC  256 (312)
Q Consensus       243 ~~l~~~~l~~n~l~  256 (312)
                      .+++.+++++|++.
T Consensus       224 ~~L~~L~l~~N~~~  237 (276)
T 2z62_A          224 TSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSCCEEECCSSCBC
T ss_pred             ccccEEEccCCccc
Confidence            89999999999554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.4e-25  Score=194.49  Aligned_cols=241  Identities=20%  Similarity=0.274  Sum_probs=186.4

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ..+++|++|++++|.+++..+  +.++++|++|++++|.++ .+| .+. .+++|++|++++|.++. ++. +..+++|+
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~  135 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLRELYLNEDNISD-ISP-LANLTKMY  135 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred             hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEEECcCCcccC-chh-hccCCcee
Confidence            468899999999999985433  899999999999999998 666 344 89999999999999984 444 88999999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      +|++++|......+ .+..+++|+.+++.+|.+....................... .. ..+..+++|+.+++++|.++
T Consensus       136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DI-SPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-cc-ccccCCCccceeecccCCCC
Confidence            99999996653443 48899999999999998776544111111111111111111 11 12667889999999999998


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ  241 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~  241 (312)
                      +..+  +..+++|++|++++|++++ .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|++++. +....
T Consensus       213 ~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~  285 (347)
T 4fmz_A          213 DITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNN  285 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             CCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcC
Confidence            5544  7889999999999999984 444 7889999999999999984 4 4578899999999999999875 55567


Q ss_pred             CCCCccccccCCCCCCCC
Q 047128          242 LQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       242 l~~l~~~~l~~n~l~~~p  259 (312)
                      +++++.+++++|.+.+.+
T Consensus       286 l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             CTTCSEEECCSSCCCGGG
T ss_pred             CCCCCEEECcCCcCCCcC
Confidence            888999999999877554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=9e-26  Score=208.92  Aligned_cols=232  Identities=19%  Similarity=0.212  Sum_probs=151.2

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCC-CCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG-NIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLP   78 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~   78 (312)
                      |+++++|++|++++|.+++..+..|.++++|++|++++|++++ .+|..+. .+++|++|++++|.+.+.+| ..+..++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhccc
Confidence            5678999999999999987777779999999999999999884 2345554 78899999999988433444 5688888


Q ss_pred             CCcEEEccCCCCCcccchhhHh------------------------hccccccccccccccccc--CCCCcc---ceeee
Q 047128           79 FLQILDIADTNLSGAIPNWINN------------------------LTGMVTSCSFTRSVQQYL--PLPIDV---GVILV  129 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~l~l~~n~~~~~~--~~~~~~---~~~~~  129 (312)
                      +|++|++++|.+++..|..+..                        +++|+.+++.+|.+....  +.....   .....
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            8888888888887766666554                        455555666666554421  000000   00000


Q ss_pred             ------------------------------ee------------------------------------------------
Q 047128          130 ------------------------------EK------------------------------------------------  131 (312)
Q Consensus       130 ------------------------------~~------------------------------------------------  131 (312)
                                                    ..                                                
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence                                          00                                                


Q ss_pred             ------eeeee--cCccc-chHHHhccccEEEcCCCcccccCCh---hhhcCCCCCEEEccCCCCccccC--hhhcCCCC
Q 047128          132 ------ASVVS--KGEMV-DYEDILNLVRMIDISRNNFSGKIPL---EVTNLKALHSLNFSYNSFTRRIP--ESIGVMTS  197 (312)
Q Consensus       132 ------~~~~~--~~~~~-~~~~~~~~L~~L~ls~n~i~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~  197 (312)
                            +....  -..++ ..+..+++|++|++++|++++..|.   .+..+++|++|++++|++++..+  ..+..+++
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence                  00000  00011 1224577788888888887765543   25667777777777777763322  34667777


Q ss_pred             CcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          198 LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       198 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      |++|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence            788888888777 567666667777777777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=208.49  Aligned_cols=247  Identities=20%  Similarity=0.134  Sum_probs=196.1

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|..   .+++|+.|++++|.+.+..+.  ..+++|+
T Consensus       279 ~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~  350 (570)
T 2z63_A          279 NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLE  350 (570)
T ss_dssp             GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred             cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCC
Confidence            45789999999999998 577788888 9999999999999 88873   689999999999998866554  7789999


Q ss_pred             EEEccCCCCCccc--chhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCc-ccchHHHhccccEEEcC
Q 047128           82 ILDIADTNLSGAI--PNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGE-MVDYEDILNLVRMIDIS  156 (312)
Q Consensus        82 ~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ls  156 (312)
                      +|++++|.+++..  +..+..+++|+.+++.+|.+....+. +..  .............+. ....+..+++|++|+++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            9999999988554  77889999999999999987754332 110  111111111111111 12355678889999999


Q ss_pred             CCcccccCChhhhcCCCCCEEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128          157 RNNFSGKIPLEVTNLKALHSLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       157 ~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                      +|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus       430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            99999888888899999999999999987 56888888999999999999999987788899999999999999999987


Q ss_pred             CCCC-CCCCCCccccccCCCCCC
Q 047128          236 IPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       236 ~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      ++.. ..+++++.+++.+|++.+
T Consensus       510 ~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          510 PDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CHHHhhcccCCcEEEecCCcccC
Confidence            7654 678888888888886543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=206.92  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++|+++...+..++.+++|
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            467888888888888888777778888888888888888888 5554433478888888888888875444467888888


Q ss_pred             cEEEccCCCCCc-ccchhhHhhccccccccccccccc
Q 047128           81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQQ  116 (312)
Q Consensus        81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~  116 (312)
                      ++|++++|.+++ ..|..+..+++|+.|++.+|.+..
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            888888888775 357778888888888887776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.8e-25  Score=209.94  Aligned_cols=110  Identities=24%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ++++|||++|+|++..+.+|.++++|++|++++|+++ .+|.+.+.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            6899999999999888889999999999999999999 788776668999999999999999766677999999999999


Q ss_pred             cCCCCCcccchhhHhhccccccccccccccc
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ  116 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~  116 (312)
                      ++|++++..+..|+.+++|+.|++.+|.+..
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence            9999997777789999999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2.5e-25  Score=189.45  Aligned_cols=178  Identities=19%  Similarity=0.167  Sum_probs=158.8

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      +++++|++++|.+++..+..|.++++|++|++++|.++ .++..  ..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            57999999999999888889999999999999999999 66655  37999999999999999 7888899999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|+++...+..|..+++|+.|++.+|.+....+                      ..+..+++|+.|++++|++++..
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------------------GLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECTTSCCSCCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----------------------hhcccccCCCEEECCCCcCCccC
Confidence            99999997777899999999999999998875433                      22345778999999999999766


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  209 (312)
                      +..|..+++|++|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            677889999999999999998 78888888899999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=192.92  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=100.4

Q ss_pred             CcCEEECCCCcccccccccc--cCCCCCCEEECcCCCCCCCCC----hhHHhcCCCCcEEEccCCcccccCCcCCCCCCC
Q 047128            6 SLVWLRLGKNKLSVDILVSL--KNCTTLESLDVGENEFVGNIP----TWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF   79 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   79 (312)
                      +|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..++ .+++|++|++++|++++..+..+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            35555555555555555444  555555555555555553333    1122 3555555555555555444455555555


Q ss_pred             CcEEEccCCCCCcc--cc--hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEc
Q 047128           80 LQILDIADTNLSGA--IP--NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI  155 (312)
Q Consensus        80 L~~L~l~~n~l~~~--~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  155 (312)
                      |++|++++|++.+.  .+  ..+..++                                              +|++|++
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~----------------------------------------------~L~~L~L  204 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFP----------------------------------------------AIQNLAL  204 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSC----------------------------------------------CCCSCBC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCC----------------------------------------------CCCEEEC
Confidence            55555555554321  11  1113334                                              4555555


Q ss_pred             CCCcccccCCh----hhhcCCCCCEEEccCCCCccccChhhcCC---CCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          156 SRNNFSGKIPL----EVTNLKALHSLNFSYNSFTRRIPESIGVM---TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       156 s~n~i~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      ++|+++ ..+.    .+..+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus       205 s~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          205 RNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             CSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             CCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence            555554 2221    13455566666666666554444444333   45666666666665 4444432  456666666


Q ss_pred             cCcccccCCCCCCCCCCccccccCCCCC
Q 047128          229 NNNLTGKIPSSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       229 ~N~l~~~~~~~~~l~~l~~~~l~~n~l~  256 (312)
                      +|++++. |....+++++.+++++|++.
T Consensus       281 ~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          281 SNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            6666543 22344555555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=7.5e-25  Score=198.85  Aligned_cols=86  Identities=26%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccc
Q 047128          169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVS  248 (312)
Q Consensus       169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~  248 (312)
                      ..+++|++|++++|++++..+  +..+++|++|++++|++++..|  +..+++|++|++++|++++. +....+++++.+
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L  358 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWL  358 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEE
T ss_pred             cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEE
Confidence            344444444444444442211  3444555555555555553332  44455555555555555543 333455566666


Q ss_pred             cccCCCCCCCC
Q 047128          249 SFAGNDLCGAP  259 (312)
Q Consensus       249 ~l~~n~l~~~p  259 (312)
                      ++++|.+.+.+
T Consensus       359 ~l~~n~l~~~~  369 (466)
T 1o6v_A          359 SAGHNQISDLT  369 (466)
T ss_dssp             ECCSSCCCBCG
T ss_pred             eCCCCccCccc
Confidence            66666555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=6.5e-26  Score=187.78  Aligned_cols=196  Identities=13%  Similarity=0.152  Sum_probs=123.3

Q ss_pred             CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-ccccCCcCCCCCCCCcEEEccC-CCCCcccchhhHhhcccccc
Q 047128           30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGPLPTRLCDLPFLQILDIAD-TNLSGAIPNWINNLTGMVTS  107 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l  107 (312)
                      +|++|++++|+++ .+|...+.++++|++|++++|+ ++...+..|..+++|++|++++ |.++...+..|..+++|+.+
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4455555555554 3333322244555555555553 4433333444455555555554 44443333444445555555


Q ss_pred             cccccccccccCCCCccceeeeeeeeeeecCcccchHHHhcccc---EEEcCCC-cccccCChhhhcCCCCC-EEEccCC
Q 047128          108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR---MIDISRN-NFSGKIPLEVTNLKALH-SLNFSYN  182 (312)
Q Consensus       108 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~i~~~~p~~~~~l~~L~-~L~Ls~n  182 (312)
                      ++.+|.+.....                        +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|
T Consensus       111 ~l~~n~l~~lp~------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          111 GIFNTGLKMFPD------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             EEEEECCCSCCC------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             eCCCCCCccccc------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            554444432110                        11233355   8999999 89877777889999999 9999999


Q ss_pred             CCccccChhhcCCCCCcEEECCCcc-CCccCCccccCC-CCCCeEecccCcccccCCCCCCCCCCccccccCC
Q 047128          183 SFTRRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSL-TFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN  253 (312)
Q Consensus       183 ~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n  253 (312)
                      +++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|++++.++.  .+.+++.+++.++
T Consensus       167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            998 555543334899999999995 986667788888 9999999999999865544  5777777776665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=8.8e-27  Score=201.10  Aligned_cols=222  Identities=14%  Similarity=0.084  Sum_probs=181.1

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|++++|.+++..+  +..+++|++|++++|+++ .++     ..++|++|++++|++++..+.   .+++|
T Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L  122 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGK  122 (317)
T ss_dssp             HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSC
T ss_pred             hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCC
Confidence            3578999999999999986554  899999999999999998 555     358999999999999965443   36889


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      ++|++++|.+++..+..+..+++|+.|++.+|.+....+                     ..+...+++|++|++++|.+
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------------AELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---------------------GGGGGGTTTCCEEECTTSCC
T ss_pred             CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH---------------------HHHhhccCcCCEEECCCCcC
Confidence            999999999998878899999999999999998875322                     12223568899999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc-cCCCC
Q 047128          161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG-KIPSS  239 (312)
Q Consensus       161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~~~~  239 (312)
                      ++. + ....+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ .++..
T Consensus       182 ~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          182 YDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             CEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             ccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            965 3 2335899999999999998 56666889999999999999999 678889999999999999999983 22222


Q ss_pred             -CCCCCCccccccCC-CCCCC
Q 047128          240 -TQLQSFDVSSFAGN-DLCGA  258 (312)
Q Consensus       240 -~~l~~l~~~~l~~n-~l~~~  258 (312)
                       ..++.++.+++.++ .+.+.
T Consensus       258 ~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          258 FSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHTCHHHHHHHHHHHHHHHSS
T ss_pred             HhccccceEEECCCchhccCC
Confidence             45666777777655 44444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=6.8e-25  Score=199.13  Aligned_cols=109  Identities=23%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             HHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCC
Q 047128          144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSN  223 (312)
Q Consensus       144 ~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~  223 (312)
                      +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. +. +..+++|++|++++|++++..+  +..+++|+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            3445566666666666664333  55666666666666666633 22 5566777777777777764332  56677777


Q ss_pred             eEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128          224 HLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       224 ~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p  259 (312)
                      .|++++|++++..+ ...+++|+.+++.+|.+.+.+
T Consensus       313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          313 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             EEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             EEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence            77777777776554 456677777777777666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.7e-27  Score=201.40  Aligned_cols=228  Identities=19%  Similarity=0.205  Sum_probs=182.6

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCC-CCCChhHH------hcCCCCcEEEccCCcccccCCcCC--
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV-GNIPTWIG------ERFSRMVVLILRSNKFHGPLPTRL--   74 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~lp~~~~------~~l~~L~~L~L~~n~l~~~~~~~~--   74 (312)
                      .++|+++++++|.+  .+|..+...  |++|++++|.+. ..+|..++      .++++|++|++++|++++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45688889999998  566655443  889999999984 35676553      148999999999999998888876  


Q ss_pred             CCCCCCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhcc
Q 047128           75 CDLPFLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL  149 (312)
Q Consensus        75 ~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (312)
                      ..+++|++|++++|.+++. |..+..+     ++|+.|++.+|.+....+..                      +..+++
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~  174 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----------------------VRVFPA  174 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----------------------CCCCSS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----------------------hccCCC
Confidence            8999999999999999977 8888888     89999999999987644322                      234778


Q ss_pred             ccEEEcCCCccccc--CChhh--hcCCCCCEEEccCCCCcc--ccC-hhhcCCCCCcEEECCCccCCccCC-ccccCCCC
Q 047128          150 VRMIDISRNNFSGK--IPLEV--TNLKALHSLNFSYNSFTR--RIP-ESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTF  221 (312)
Q Consensus       150 L~~L~ls~n~i~~~--~p~~~--~~l~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~  221 (312)
                      |++|++++|++.+.  .+..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++..| ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            99999999998765  23344  789999999999999983  222 334578999999999999997765 45667899


Q ss_pred             CCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128          222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      |++|++++|+++..+....  .+++.+++++|.+.+.|.
T Consensus       255 L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             CCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred             CCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh
Confidence            9999999999994443333  789999999999988754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.9e-24  Score=194.12  Aligned_cols=225  Identities=17%  Similarity=0.158  Sum_probs=166.8

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      ++++|++|++++|.+++. | .+..+++|++|++++|.++ .+|  +. .+++|++|++++|++++. +  ++.+++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            478999999999999854 5 6889999999999999999 666  44 799999999999999954 4  889999999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      |++++|++++. +  +..+++|+.+++.+|.+... +..................+..  .+..+++|++|++++|++++
T Consensus       111 L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          111 LNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             EECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCcCCee-c--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            99999999864 4  88999999999999998864 2111111111111111011111  24457788899999998885


Q ss_pred             cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCC
Q 047128          163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL  242 (312)
Q Consensus       163 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  242 (312)
                       +|  +..+++|++|++++|++++. +  ++.+++|++|++++|++++ +|  +..+++|+.|++++|++++.++  ..+
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--~~l  253 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--STL  253 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC--TTC
T ss_pred             -ec--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH--HHC
Confidence             44  77888899999999988843 2  6788889999999999985 56  7788889999999999887653  234


Q ss_pred             CCCccccccCC
Q 047128          243 QSFDVSSFAGN  253 (312)
Q Consensus       243 ~~l~~~~l~~n  253 (312)
                      .+++.+++.+|
T Consensus       254 ~~L~~L~l~~n  264 (457)
T 3bz5_A          254 SKLTTLHCIQT  264 (457)
T ss_dssp             TTCCEEECTTC
T ss_pred             CCCCEEeccCC
Confidence            44443333333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1e-24  Score=184.08  Aligned_cols=182  Identities=23%  Similarity=0.229  Sum_probs=156.8

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ..+++|++|++++|.+++ + ..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+
T Consensus        60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            468999999999999985 3 47899999999999999999 67766555899999999999999977777789999999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      +|++++|.+++..+..+..++                                              +|++|++++|+++
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~----------------------------------------------~L~~L~l~~n~l~  170 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLT----------------------------------------------NLTELDLSYNQLQ  170 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCC
T ss_pred             EEECCCCccCccCHHHhccCc----------------------------------------------cCCEEECCCCCcC
Confidence            999999999866555554444                                              4888999999999


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      +..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.       ++.|+.++++.|+++|.+|..
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            77777789999999999999999977777788999999999999988743       557899999999999988754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-24  Score=198.48  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=176.9

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |+++++|++|+|++|.+++..|  +.++++|++|++++|.++ .+|     ..++|+.|++++|.+++..+.   .+++|
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L  122 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGK  122 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCCCEEEC---CCSSC
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEECcCCcCCCCCcc---ccCCC
Confidence            4678999999999999987665  899999999999999998 555     348999999999999965543   46889


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      ++|++++|.+++..|..+..+++|+.|++.+|.+....+.                     .+...+++|+.|++++|.+
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---------------------ELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---------------------GGGGGTTTCCEEECTTSCC
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---------------------HHhhhCCcccEEecCCCcc
Confidence            9999999999988888999999999999999998754321                     1223578899999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc-CCC-
Q 047128          161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK-IPS-  238 (312)
Q Consensus       161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~~~-  238 (312)
                      ++..+  ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. +|. 
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            96633  3468999999999999995 5555889999999999999999 5788889999999999999999832 222 


Q ss_pred             CCCCCCCcccccc
Q 047128          239 STQLQSFDVSSFA  251 (312)
Q Consensus       239 ~~~l~~l~~~~l~  251 (312)
                      ...+..+..+++.
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            2445555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=2.7e-24  Score=184.74  Aligned_cols=194  Identities=16%  Similarity=0.269  Sum_probs=160.0

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.+. .++. +. .+++|++|++++|++++ + ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence            6789999999999974 44 6888999999999999999 6776 44 89999999999999984 4 368899999999


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.+++. + .+..+++|+.|++.+|.+....+                        +..+++|++|++++|.+++.
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~------------------------l~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP------------------------LAGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG------------------------GGGCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc------------------------ccCCCCccEEEccCCcCCCC
Confidence            9999999854 3 38889999999999988764321                        34577899999999999854


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI  236 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  236 (312)
                      .+  +..+++|++|++++|++++ ++. +..+++|++|++++|++++.. . +..+++|+.|++++|++++..
T Consensus       167 ~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          167 TP--LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-P-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-G-GTTCTTCCEEEEEEEEEECCC
T ss_pred             hh--hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc-c-ccCCCCCCEEEccCCeeecCC
Confidence            33  8889999999999999984 443 778899999999999998544 3 788999999999999998643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.4e-23  Score=189.70  Aligned_cols=189  Identities=20%  Similarity=0.200  Sum_probs=122.5

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      +++++|++|++++|.+++. |  +..+++|++|++++|+++ .+|  +. .+++|++|++++|++++ +|  ++.+++|+
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~  130 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLT  130 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred             cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence            4678889999999988854 3  788888999999999888 555  43 78889999999998885 44  78888888


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      +|++++|.+++. +  +..+++|+.+++.+|...+..+..................+ .+  +..+++|+.|++++|+++
T Consensus       131 ~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          131 YLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            888888888754 2  66777788887777743332221111111111111111111 11  344566677777777666


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI  212 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  212 (312)
                      +.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++..
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            43   25566667777777776663 44  556666666666666666443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=9.5e-24  Score=176.03  Aligned_cols=179  Identities=18%  Similarity=0.193  Sum_probs=155.5

Q ss_pred             CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128           30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS  109 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  109 (312)
                      ..++++++++.++ .+|..+.   ++++.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++      
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------   84 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE------   84 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT------
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc------
Confidence            4678999999999 8998764   68999999999999888888999999999999999998766655555444      


Q ss_pred             cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128          110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP  189 (312)
Q Consensus       110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  189 (312)
                                                              |++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus        85 ----------------------------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           85 ----------------------------------------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             ----------------------------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ----------------------------------------CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence                                                    8889999999997777888999999999999999996666


Q ss_pred             hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC-CCCCCCCccccccCCCCCCC
Q 047128          190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS-STQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~~~l~~n~l~~~  258 (312)
                      ..+..+++|++|++++|++++..+..|..+++|++|++++|++++.++. ...+.+++.+++.+|.+.+.
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6788999999999999999976666899999999999999999987774 36788999999999976543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=5.3e-26  Score=201.56  Aligned_cols=239  Identities=15%  Similarity=0.156  Sum_probs=169.8

Q ss_pred             CCCCcCEEECCCCccccccc----ccccCCCCCCEEECcCCC---CCCCCChhHH------hcCCCCcEEEccCCcccc-
Q 047128            3 SLTSLVWLRLGKNKLSVDIL----VSLKNCTTLESLDVGENE---FVGNIPTWIG------ERFSRMVVLILRSNKFHG-   68 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~---l~~~lp~~~~------~~l~~L~~L~L~~n~l~~-   68 (312)
                      .+++|++|+|++|.++...+    ..+..+++|++|++++|.   +.+.+|.++.      ..+++|++|++++|+++. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            47889999999999986543    457789999999999964   4445666552      378999999999999986 


Q ss_pred             ---cCCcCCCCCCCCcEEEccCCCCCcccchhhH----hh---------cccccccccccccccccCCCCccceeeeeee
Q 047128           69 ---PLPTRLCDLPFLQILDIADTNLSGAIPNWIN----NL---------TGMVTSCSFTRSVQQYLPLPIDVGVILVEKA  132 (312)
Q Consensus        69 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  132 (312)
                         .+|..+..+++|++|++++|.++...+..+.    .+         ++|+.|++.+|.+.....             
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------  176 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-------------  176 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-------------
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-------------
Confidence               3666788899999999999999755444443    44         899999999998752100             


Q ss_pred             eeeecCcccchHHHhccccEEEcCCCcccc-----cCChhhhcCCCCCEEEccCCCCc----cccChhhcCCCCCcEEEC
Q 047128          133 SVVSKGEMVDYEDILNLVRMIDISRNNFSG-----KIPLEVTNLKALHSLNFSYNSFT----RRIPESIGVMTSLESIDF  203 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~l  203 (312)
                           ..+...+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    ..+|..+..+++|++|++
T Consensus       177 -----~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          177 -----KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             -----HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             -----HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence                 0011234456678888888887762     23336667778888888888774    456666777778888888


Q ss_pred             CCccCCcc----CCcccc--CCCCCCeEecccCcccc----cCCCC--CCCCCCccccccCCCCCCCC
Q 047128          204 STNQLSGE----IPESMS--SLTFSNHLNLSNNNLTG----KIPSS--TQLQSFDVSSFAGNDLCGAP  259 (312)
Q Consensus       204 ~~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~~----~~~~~--~~l~~l~~~~l~~n~l~~~p  259 (312)
                      ++|.+++.    ++..+.  .+++|++|++++|++++    .++..  ..+++|+.+++.+|.+.+..
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            88877754    344453  37778888888887776    23322  23577777777777666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=4.8e-25  Score=189.61  Aligned_cols=209  Identities=18%  Similarity=0.164  Sum_probs=160.2

Q ss_pred             CCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCcccccCCcCC--CCCCCCcEEEccCCCCCcccc----hhh
Q 047128           29 TTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGPLPTRL--CDLPFLQILDIADTNLSGAIP----NWI   98 (312)
Q Consensus        29 ~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~   98 (312)
                      ..++.+.+.++.+...    +...+  .+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3578888888877521    11111  35779999999999998888887  889999999999999886544    344


Q ss_pred             HhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc--C--ChhhhcCCCC
Q 047128           99 NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK--I--PLEVTNLKAL  174 (312)
Q Consensus        99 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~--~--p~~~~~l~~L  174 (312)
                      ..+++|+.|++.+|.+....+..                      +..+++|++|++++|++.+.  .  +..+..+++|
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQ----------------------VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTS----------------------CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             hhccCCCEEEeeCCCcchhhHHH----------------------hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            56889999999999886544322                      23467899999999998642  2  2334688999


Q ss_pred             CEEEccCCCCccccCh----hhcCCCCCcEEECCCccCCccCCccccCC---CCCCeEecccCcccccCCCCCCCCCCcc
Q 047128          175 HSLNFSYNSFTRRIPE----SIGVMTSLESIDFSTNQLSGEIPESMSSL---TFSNHLNLSNNNLTGKIPSSTQLQSFDV  247 (312)
Q Consensus       175 ~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~~~~~~l~~l~~  247 (312)
                      ++|++++|+++ .++.    .+..+++|++|++++|++++..|..+..+   ++|++|++++|+++..+...  .++++.
T Consensus       200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~  276 (310)
T 4glp_A          200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRV  276 (310)
T ss_dssp             CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSC
T ss_pred             CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCE
Confidence            99999999997 4444    25678999999999999998778777665   79999999999999554433  378999


Q ss_pred             ccccCCCCCCCCCCCCC
Q 047128          248 SSFAGNDLCGAPIPKNC  264 (312)
Q Consensus       248 ~~l~~n~l~~~p~~~~c  264 (312)
                      +++++|.+.+.|....+
T Consensus       277 L~Ls~N~l~~~~~~~~l  293 (310)
T 4glp_A          277 LDLSSNRLNRAPQPDEL  293 (310)
T ss_dssp             EECCSCCCCSCCCTTSC
T ss_pred             EECCCCcCCCCchhhhC
Confidence            99999999987654333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.7e-24  Score=190.21  Aligned_cols=236  Identities=14%  Similarity=0.135  Sum_probs=171.3

Q ss_pred             CCCcCEEECCCCccccccc----ccccCCC-CCCEEECcCCCCCCCCChhHHhcC-----CCCcEEEccCCcccccCCcC
Q 047128            4 LTSLVWLRLGKNKLSVDIL----VSLKNCT-TLESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTR   73 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~l~~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~~   73 (312)
                      .++|++|+|++|.+++..+    ..+.+++ +|++|++++|.+.+..+..+. .+     ++|++|++++|++++..+..
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHH
Confidence            3458999999999886666    6778888 899999999998855555554 43     88999999999988655443


Q ss_pred             ----CCCC-CCCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccch
Q 047128           74 ----LCDL-PFLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY  143 (312)
Q Consensus        74 ----~~~l-~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (312)
                          +..+ ++|++|++++|.++...+..+...     .+|+.|++.+|.+.....                  ..+...
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------------------~~l~~~  161 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------------------DELIQI  161 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------------------HHHHHH
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------------------HHHHHH
Confidence                3334 789999999999886666555442     588999998888763211                  011122


Q ss_pred             HHHhc-cccEEEcCCCcccccCChhhh----cC-CCCCEEEccCCCCccc----cChhhcC-CCCCcEEECCCccCCccC
Q 047128          144 EDILN-LVRMIDISRNNFSGKIPLEVT----NL-KALHSLNFSYNSFTRR----IPESIGV-MTSLESIDFSTNQLSGEI  212 (312)
Q Consensus       144 ~~~~~-~L~~L~ls~n~i~~~~p~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~l~~N~l~~~~  212 (312)
                      +...+ +|++|++++|++++..+..+.    .. ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            23333 899999999999877765444    44 5999999999999842    4555555 459999999999998654


Q ss_pred             C----ccccCCCCCCeEecccCcccccC--------CCCCCCCCCccccccCCCCCCC
Q 047128          213 P----ESMSSLTFSNHLNLSNNNLTGKI--------PSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       213 p----~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                      +    ..+..+++|++|++++|.+.+..        .....+++++.+++++|.+.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4    34567889999999999854322        2335677888899999976543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=9.3e-23  Score=175.12  Aligned_cols=177  Identities=20%  Similarity=0.262  Sum_probs=149.1

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ   81 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   81 (312)
                      ..+++|++|++++|.+++..+  +.++++|++|++++|++. .++ .+. .+++|++|++++|++++ ++ .+..+++|+
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  132 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTLDLTSTQITD-VT-PLAGLSNLQ  132 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEECTTSCCCC-CG-GGTTCTTCC
T ss_pred             hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEECCCCCCCC-ch-hhcCCCCCC
Confidence            468999999999999985444  999999999999999998 666 444 89999999999999995 44 389999999


Q ss_pred             EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128           82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS  161 (312)
Q Consensus        82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~  161 (312)
                      +|++++|.+++..+  +..+++|+.|++.+|.+....+                        +..+++|+.|++++|.++
T Consensus       133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------------------------l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------------------------LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------------------------GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------------------------hcCCCCCCEEECCCCccC
Confidence            99999999985544  8899999999999998764221                        345788999999999999


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM  216 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  216 (312)
                      +..+  +..+++|++|++++|++++.. . +..+++|+.|++++|+++ ..|..+
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~l~~N~i~-~~~~~~  236 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS-P-LANTSNLFIVTLTNQTIT-NQPVFY  236 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG-G-GTTCTTCCEEEEEEEEEE-CCCEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc-c-ccCCCCCCEEEccCCeee-cCCeee
Confidence            5443  889999999999999998444 3 789999999999999998 445433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.4e-23  Score=180.94  Aligned_cols=232  Identities=9%  Similarity=0.095  Sum_probs=170.6

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCC-CChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGN-IPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      ++++.|++++|.+++..+. +..+++|++|++++|.+.+. +|..+. .+++|++|++++|.+++..+..++.+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            6788888888888765544 55688888999988887744 555554 78889999998888887777778888889999


Q ss_pred             EccCC-CCCcc-cchhhHhhccccccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhc-cccEEEcCCC-
Q 047128           84 DIADT-NLSGA-IPNWINNLTGMVTSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN-LVRMIDISRN-  158 (312)
Q Consensus        84 ~l~~n-~l~~~-~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~ls~n-  158 (312)
                      ++++| .+++. .+..+..+++|+.|++.+| .+...                     ..+..+..++ +|++|++++| 
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------------------~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------------HVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---------------------HHHHHHHHSCTTCCEEECCSCG
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---------------------HHHHHHHhcccCCCEEEeCCCc
Confidence            99888 57653 5666788888888888887 65421                     1234456677 8999999999 


Q ss_pred             -ccc-ccCChhhhcCCCCCEEEccCCC-CccccChhhcCCCCCcEEECCCcc-CCccCCccccCCCCCCeEecccCcccc
Q 047128          159 -NFS-GKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       159 -~i~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                       .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++| ++.
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence             454 3566677889999999999998 776777788889999999999995 43333335778999999999988 332


Q ss_pred             cCCCCCCC-CCCccccccCCCCCCCCCCC
Q 047128          235 KIPSSTQL-QSFDVSSFAGNDLCGAPIPK  262 (312)
Q Consensus       235 ~~~~~~~l-~~l~~~~l~~n~l~~~p~~~  262 (312)
                      .  ....+ ..+..+++++|.+++..++.
T Consensus       286 ~--~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          286 G--TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             T--CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             H--HHHHHHhhCcceEEecccCccccCCc
Confidence            1  11122 23566677888887765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=5.9e-23  Score=169.96  Aligned_cols=197  Identities=16%  Similarity=0.167  Sum_probs=165.1

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCCCCChhHHhcCCCCcEEEccC-CcccccCCcCCCCCCCCcE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~   82 (312)
                      ++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |+++...+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            379999999999997777789999999999999997 87 78776556899999999999 9999776678999999999


Q ss_pred             EEccCCCCCcccchhhHhhcccc---ccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhcccc-EEEcCC
Q 047128           83 LDIADTNLSGAIPNWINNLTGMV---TSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR-MIDISR  157 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~---~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~ls~  157 (312)
                      |++++|.+++ +|. +..+++|+   .+++.+| .+....+                      ..+..+++|+ +|++++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------NAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------TTTTTTBSSEEEEECCS
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc----------------------ccccchhcceeEEEcCC
Confidence            9999999985 665 88888888   9999988 6654332                      2344578899 999999


Q ss_pred             CcccccCChhhhcCCCCCEEEccCCC-CccccChhhcCC-CCCcEEECCCccCCccCCccccCCCCCCeEecccC
Q 047128          158 NNFSGKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVM-TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNN  230 (312)
Q Consensus       158 n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N  230 (312)
                      |+++...+..+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|+++ .+|..  .+++|+.|+++++
T Consensus       166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            9999544445555 899999999995 986666778888 99999999999999 55553  6788999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.3e-23  Score=186.08  Aligned_cols=219  Identities=13%  Similarity=0.216  Sum_probs=171.0

Q ss_pred             CCCCCCcCEEECCCCc---ccccccccc-------cCCCCCCEEECcCCCCCC----CCChhHHhcCCCCcEEEccCCcc
Q 047128            1 MGSLTSLVWLRLGKNK---LSVDILVSL-------KNCTTLESLDVGENEFVG----NIPTWIGERFSRMVVLILRSNKF   66 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~---i~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~lp~~~~~~l~~L~~L~L~~n~l   66 (312)
                      |.++++|++|+|++|.   +++..|..+       ..+++|++|++++|.+.+    .+|..+. .+++|++|++++|.+
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCC
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCC
Confidence            4578999999999974   444555444       789999999999999995    2666665 799999999999999


Q ss_pred             cccCCcCCC----CC---------CCCcEEEccCCCCC-cccc---hhhHhhcccccccccccccccccCCCCccceeee
Q 047128           67 HGPLPTRLC----DL---------PFLQILDIADTNLS-GAIP---NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILV  129 (312)
Q Consensus        67 ~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~  129 (312)
                      +...+..+.    .+         ++|++|++++|+++ ...+   ..+..+++|+.|++.+|.+...--          
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~----------  204 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI----------  204 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH----------
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH----------
Confidence            744333333    33         89999999999997 3444   467789999999999998762100          


Q ss_pred             eeeeeeecCcccchHHHhccccEEEcCCCccc----ccCChhhhcCCCCCEEEccCCCCccc----cChhhc--CCCCCc
Q 047128          130 EKASVVSKGEMVDYEDILNLVRMIDISRNNFS----GKIPLEVTNLKALHSLNFSYNSFTRR----IPESIG--VMTSLE  199 (312)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~  199 (312)
                             ....+..+..+++|++|++++|.++    ..+|..+..+++|++|++++|.+++.    ++..+.  .+++|+
T Consensus       205 -------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          205 -------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             -------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             -------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence                   0001113445788999999999996    56788889999999999999999855    456663  389999


Q ss_pred             EEECCCccCCc----cCCccc-cCCCCCCeEecccCcccccCC
Q 047128          200 SIDFSTNQLSG----EIPESM-SSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       200 ~L~l~~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      +|++++|.+++    .+|..+ ..+++|++|++++|++++..+
T Consensus       278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99999999996    377776 568999999999999997653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=3.7e-22  Score=162.99  Aligned_cols=156  Identities=15%  Similarity=0.190  Sum_probs=133.6

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFT  111 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  111 (312)
                      +.++.+++.++ .+|..+.   ++++.|++++|++++..+..|..+++|++|++++|.+++..|..|..+++        
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------   81 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------   81 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence            67889999998 8887653   78999999999999777778899999999999999998776777665554        


Q ss_pred             cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128          112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES  191 (312)
Q Consensus       112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  191 (312)
                                                            |++|++++|.++...+..|..+++|++|+|++|++++..|..
T Consensus        82 --------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           82 --------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             --------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             --------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence                                                  778999999999666667888999999999999999777888


Q ss_pred             hcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          192 IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       192 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      |..+++|+.|++++|++++..+..|..+++|++|++++|++.+.+.
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999999999999999997777788899999999999999987643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=163.80  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF  110 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  110 (312)
                      +.+++++|.++ .+|..+.   ..++.|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++       
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------   82 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------   82 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-------
Confidence            57888888888 7887653   456788888888886544 34778888888888888888655555554444       


Q ss_pred             ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128          111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE  190 (312)
Q Consensus       111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  190 (312)
                                                             |++|++++|.+++..+..|..+++|++|++++|++++..|.
T Consensus        83 ---------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           83 ---------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             ---------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             ---------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence                                                   77788888888877777788899999999999999877788


Q ss_pred             hhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          191 SIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       191 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      .+..+++|+.|++++|++++..|..|..+++|++|++++|+++|.++
T Consensus       124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            88889999999999999997778888899999999999999988665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=1.4e-21  Score=176.50  Aligned_cols=78  Identities=26%  Similarity=0.457  Sum_probs=51.2

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.+++ +| .+.++++|++|++++|+++ .+|..    ..+|++|++++|++++ +| .+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            467778888877774 55 4777777777777777777 46543    3466666776666663 44 456666666666


Q ss_pred             ccCCCCC
Q 047128           85 IADTNLS   91 (312)
Q Consensus        85 l~~n~l~   91 (312)
                      +++|.++
T Consensus       202 l~~N~l~  208 (454)
T 1jl5_A          202 ADNNSLK  208 (454)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCC
Confidence            6665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=6.1e-22  Score=160.31  Aligned_cols=175  Identities=16%  Similarity=0.153  Sum_probs=118.7

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      +.++.+++.++ .+|..+  .++|++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            45666777666 344333  346777777777777 56655444677777777777777755555567777777777777


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      |.+++..+..+..++                                              +|++|++++|++++..+..
T Consensus        86 n~l~~~~~~~~~~l~----------------------------------------------~L~~L~L~~N~l~~~~~~~  119 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLT----------------------------------------------QLKELALNTNQLQSLPDGV  119 (208)
T ss_dssp             SCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCCCCCTTT
T ss_pred             CcCCccCHhHhcCcc----------------------------------------------CCCEEEcCCCcCcccCHhH
Confidence            777644443333333                                              3677777777777666666


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      +..+++|++|++++|++++..+..+..+++|++|++++|.+.+       .++.|+.|+++.|+++|.+|..
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence            7777888888888888775555556777788888888886653       3456777778888887766643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=1.9e-22  Score=176.34  Aligned_cols=222  Identities=16%  Similarity=0.098  Sum_probs=117.3

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcE-EEccCCcccccCCcCCCCCCCCcEEE
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVV-LILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++++|+|++|+|+...+.+|.++++|++|++++|++.+.+|...+.+++++++ +.++.|+++...|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34455555555543333344455555555555554433444443334444332 33334444444344444455555555


Q ss_pred             ccCCCCCcccchhhHhhcccccccccc-cccccccCCCCccceeeeeeeeeeecCcccchHHH-hccccEEEcCCCcccc
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFT-RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI-LNLVRMIDISRNNFSG  162 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~ls~n~i~~  162 (312)
                      +++|++....+..+.....+..+++.. +.+....                      ...+.. ...++.|++++|+++.
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------------------~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------------------RNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------------------TTSSTTSBSSCEEEECCSSCCCE
T ss_pred             ccccccccCCchhhcccchhhhhhhcccccccccc----------------------ccchhhcchhhhhhccccccccC
Confidence            555544433333333333333333322 1121111                      111122 2357889999999985


Q ss_pred             cCChhhhcCCCCCEEEccC-CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128          163 KIPLEVTNLKALHSLNFSY-NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ  241 (312)
Q Consensus       163 ~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~  241 (312)
                      ..+ ......+|+++++++ |.++...++.|..+++|++|++++|+|+ .+|..  .+.+|+.|...++.--..+|....
T Consensus       169 i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          169 IHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             ECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTT
T ss_pred             CCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchh
Confidence            444 444567888899875 5676333456788899999999999998 45542  244566665554433345566667


Q ss_pred             CCCCccccccCC
Q 047128          242 LQSFDVSSFAGN  253 (312)
Q Consensus       242 l~~l~~~~l~~n  253 (312)
                      +.+|+.+++.++
T Consensus       245 l~~L~~l~l~~~  256 (350)
T 4ay9_X          245 LVALMEASLTYP  256 (350)
T ss_dssp             CCSCCEEECSCH
T ss_pred             CcChhhCcCCCC
Confidence            777777766543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=2.5e-22  Score=181.33  Aligned_cols=218  Identities=20%  Similarity=0.211  Sum_probs=103.9

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      ++|++++|.+++ +|..   .++|++|++++|.++ .+|.    .+++|++|++++|++++ +|..   .++|++|++++
T Consensus        74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~-~lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~  140 (454)
T 1jl5_A           74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN  140 (454)
T ss_dssp             SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred             CEEEecCCcccc-CCCC---cCCCCEEEccCCcCC-cccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence            445555555442 2221   245555555555555 3443    23556666666666552 2221   15677777777


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      |.+++ +| .+..+++|+.+++.+|.+...... .. .........+...+ .+ .+..+++|++|++++|.+++ +|..
T Consensus       141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~-~~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~  213 (454)
T 1jl5_A          141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL-PP-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL  213 (454)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC-CT-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred             CCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC-cc-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence            77764 55 467777777777777766542211 10 11111110111111 11 23344555555555555553 2221


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCcc
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDV  247 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~  247 (312)
                         .++|++|++++|.++ .+|. ++.+++|++|++++|+++ .+|+.   +++|++|++++|++++.++   ...+++.
T Consensus       214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~---~~~~L~~  281 (454)
T 1jl5_A          214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPE---LPQSLTF  281 (454)
T ss_dssp             ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred             ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCc---ccCcCCE
Confidence               135555555555554 4443 455555555555555555 23332   2455555555555554221   1244555


Q ss_pred             ccccCCCCCC
Q 047128          248 SSFAGNDLCG  257 (312)
Q Consensus       248 ~~l~~n~l~~  257 (312)
                      +++++|.+.+
T Consensus       282 L~ls~N~l~~  291 (454)
T 1jl5_A          282 LDVSENIFSG  291 (454)
T ss_dssp             EECCSSCCSE
T ss_pred             EECcCCccCc
Confidence            5555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=3.3e-22  Score=161.87  Aligned_cols=164  Identities=17%  Similarity=0.189  Sum_probs=140.6

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      .++|++|++++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|++++..+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            467999999999999777777899999999999999999 7887766689999999999999996666668999999999


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.+++..+..+..++                                              +|++|++++|++++.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~----------------------------------------------~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLT----------------------------------------------QLKDLRLYQNQLKSV  139 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCSCC
T ss_pred             EcCCCcCcccCHhHhccCC----------------------------------------------cCCEEECCCCcccee
Confidence            9999999865554454444                                              488899999999977


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF  221 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  221 (312)
                      .+..+..+++|++|++++|.+.+       .+++|+.|+++.|++++.+|+.++.++.
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            77778999999999999998763       4568999999999999999998876654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=1.5e-21  Score=181.73  Aligned_cols=221  Identities=20%  Similarity=0.210  Sum_probs=128.0

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.    .+++|++|++++|++++ +|.   .+++|++|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence            45666666666666 3333   4566677777777766 5665    45667777777777663 443   456677777


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.++. +|..   +++|+.|++.+|.+.........  ...+....+.... ++   ..+++|+.|++++|.+++ +
T Consensus       128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~--L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          128 IFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSE--LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L  196 (622)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTT--CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             CCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCC--CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence            77777663 3432   36777777777776653221111  1111000000000 00   223445555555555553 2


Q ss_pred             Chhh-----------------hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128          165 PLEV-----------------TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL  227 (312)
Q Consensus       165 p~~~-----------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  227 (312)
                      |..+                 ..+++|++|++++|+++ .+|   ..+++|+.|++++|+++ .+|.   .+++|+.|++
T Consensus       197 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence            2111                 01256777777777776 355   34577788888888777 5555   4577888888


Q ss_pred             ccCcccccCCCCCCCCCCccccccCCCCCC
Q 047128          228 SNNNLTGKIPSSTQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       228 ~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~  257 (312)
                      ++|+++..++....+++++.+++.+|.+.+
T Consensus       269 s~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          269 YRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence            888888554445667778888888887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=1.5e-21  Score=166.16  Aligned_cols=172  Identities=15%  Similarity=0.245  Sum_probs=115.7

Q ss_pred             CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      .+++|++|++++|.+. .++. +. .+++|++|++++|++++.. . +..+++|++|++++|.+++ .+ .+..+++|+.
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            4555566666666555 4443 22 4566666666666655322 2 5555666666666665553 22 2555555555


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR  186 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~  186 (312)
                      |++.+|.+...                        ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++
T Consensus       117 L~L~~n~i~~~------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          117 LSLEHNGISDI------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EECTTSCCCCC------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCcCCCC------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            55555554421                        1123356789999999999854  578899999999999999985


Q ss_pred             ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128          187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                      ..|  +..+++|+.|++++|.+++ ++. +..+++|+.|++++|+++..
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             chh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence            444  7889999999999999984 554 78899999999999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=2.9e-22  Score=175.85  Aligned_cols=178  Identities=21%  Similarity=0.230  Sum_probs=112.2

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHh-cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGE-RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      .++++++.++ .+|..+.  +.+++|++++|+++ .++...+. .+++|+.|++++|++++..+..|..+++|++|++++
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4455555554 2333321  23455555555555 33333332 445555555555555544444455555555555555


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      |+++...+..|.                                              .+++|++|++++|++++..|..
T Consensus        98 N~l~~~~~~~~~----------------------------------------------~l~~L~~L~L~~N~i~~~~~~~  131 (361)
T 2xot_A           98 NHLHTLDEFLFS----------------------------------------------DLQALEVLLLYNNHIVVVDRNA  131 (361)
T ss_dssp             SCCCEECTTTTT----------------------------------------------TCTTCCEEECCSSCCCEECTTT
T ss_pred             CcCCcCCHHHhC----------------------------------------------CCcCCCEEECCCCcccEECHHH
Confidence            555433332332                                              3455888999999999888889


Q ss_pred             hhcCCCCCEEEccCCCCccccChhh---cCCCCCcEEECCCccCCccCCccccCCCC--CCeEecccCcccccC
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESI---GVMTSLESIDFSTNQLSGEIPESMSSLTF--SNHLNLSNNNLTGKI  236 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~  236 (312)
                      |..+++|++|+|++|++++..+..+   ..+++|+.|++++|++++..+..+..++.  ++.|++++|++.|.+
T Consensus       132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            9999999999999999984434444   56899999999999999555566777776  488999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.7e-23  Score=179.71  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=181.5

Q ss_pred             CcCEEECCCCcccccccccccCC--CCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccccc-CCcCCCCCCCCcE
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNC--TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTRLCDLPFLQI   82 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~   82 (312)
                      .++.++++++.+.   +..+..+  +.++++++++|.+.+..+ .++ .+++|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4789999999886   3455566  889999999999995544 455 799999999999998855 7777889999999


Q ss_pred             EEccCCCCCcccchhhHhhccccccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC-cc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN-NF  160 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~i  160 (312)
                      |++++|.+++..+..+..+++|+.|++.+| .+..                     ...+..+..+++|++|++++| .+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCc
Confidence            999999998888889999999999999998 4432                     113445667899999999999 89


Q ss_pred             ccc-CChhhhcCC-CCCEEEccCC--CCc-cccChhhcCCCCCcEEECCCcc-CCccCCccccCCCCCCeEecccCc-cc
Q 047128          161 SGK-IPLEVTNLK-ALHSLNFSYN--SFT-RRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSLTFSNHLNLSNNN-LT  233 (312)
Q Consensus       161 ~~~-~p~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~-l~  233 (312)
                      ++. .+..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            864 567788999 9999999999  455 4567777889999999999999 777778889999999999999995 32


Q ss_pred             cc-CCCCCCCCCCccccccCC
Q 047128          234 GK-IPSSTQLQSFDVSSFAGN  253 (312)
Q Consensus       234 ~~-~~~~~~l~~l~~~~l~~n  253 (312)
                      .. +.....+++|+.+++.+|
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHHHhcCCCCCEEeccCc
Confidence            21 112356788999999888

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=1.8e-21  Score=159.93  Aligned_cols=157  Identities=20%  Similarity=0.236  Sum_probs=135.2

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF  110 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  110 (312)
                      .+.++.++++++ .+|..+.   ++|+.|++++|++++..|..|..+++|++|++++|+++...+..|..++        
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC--------
Confidence            578899999998 8998653   8899999999999987788899999999999999999755444454444        


Q ss_pred             ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128          111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE  190 (312)
Q Consensus       111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  190 (312)
                                                            +|++|++++|++++..+..|..+++|++|++++|+++ .+|.
T Consensus        89 --------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~  129 (229)
T 3e6j_A           89 --------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR  129 (229)
T ss_dssp             --------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred             --------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence                                                  4888999999999777777899999999999999998 8888


Q ss_pred             hhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          191 SIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       191 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                      .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.++.
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            889999999999999999966667788999999999999999987653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=1.5e-21  Score=179.89  Aligned_cols=182  Identities=20%  Similarity=0.289  Sum_probs=152.8

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      .+|+.|++++|.+++ +|..+  .++|++|++++|.++ .+| .   .+++|+.|++++|++++ +|. +..  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            379999999999986 66655  378999999999999 899 2   58999999999999996 776 665  999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.+++ +|.   .+++|+.|++.+|.+.....                          .+++|++|++++|.+++ +
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--------------------------~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTMLPE--------------------------LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--------------------------CCTTCCEEECCSSCCSC-C
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCcCCC--------------------------cCCCcCEEECCCCCCCC-c
Confidence            99999996 565   68999999999998875211                          24679999999999996 6


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCC-------cEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL-------ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      |. +.  ++|+.|++++|+|+ .+|. +..  +|       +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            66 55  99999999999998 7777 543  77       99999999999 688888889999999999999987554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=9.7e-23  Score=178.98  Aligned_cols=230  Identities=16%  Similarity=0.067  Sum_probs=174.8

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCCh----hHHhcCC-CCcEEEccCCcccccCCcCCCCC-----C
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPT----WIGERFS-RMVVLILRSNKFHGPLPTRLCDL-----P   78 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~   78 (312)
                      .+.+++|.+++.+|..+...++|++|++++|.++ ..+.    ..+..++ +|++|++++|+++...+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4688999999888888777788999999999999 5553    3334788 99999999999997666666654     8


Q ss_pred             CCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH-hccccE
Q 047128           79 FLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI-LNLVRM  152 (312)
Q Consensus        79 ~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~  152 (312)
                      +|++|++++|.+++..+..+...     ++|+.|++.+|.+.......                  +...+.. .++|++
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------------------l~~~l~~~~~~L~~  142 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE------------------FKQAFSNLPASITS  142 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH------------------HHHHHTTSCTTCCE
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH------------------HHHHHHhCCCceeE
Confidence            99999999999987777765554     89999999999986432100                  1111222 258999


Q ss_pred             EEcCCCcccccCCh----hhhcCC-CCCEEEccCCCCccccChhh----cCC-CCCcEEECCCccCCcc----CCccccC
Q 047128          153 IDISRNNFSGKIPL----EVTNLK-ALHSLNFSYNSFTRRIPESI----GVM-TSLESIDFSTNQLSGE----IPESMSS  218 (312)
Q Consensus       153 L~ls~n~i~~~~p~----~~~~l~-~L~~L~Ls~n~l~~~~p~~~----~~l-~~L~~L~l~~N~l~~~----~p~~~~~  218 (312)
                      |++++|.+++..+.    .+...+ +|++|++++|++++..+..+    ... ++|++|++++|.+++.    ++..+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            99999999965443    445565 99999999999986665443    445 5999999999999953    4445554


Q ss_pred             -CCCCCeEecccCcccccCC-----CCCCCCCCccccccCCCCCC
Q 047128          219 -LTFSNHLNLSNNNLTGKIP-----SSTQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       219 -l~~L~~L~l~~N~l~~~~~-----~~~~l~~l~~~~l~~n~l~~  257 (312)
                       .++|++|++++|++++..+     ....+.+++.+++++|.+.+
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~  267 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN  267 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence             4699999999999986433     12456788899999886443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2e-23  Score=189.07  Aligned_cols=255  Identities=15%  Similarity=0.086  Sum_probs=163.3

Q ss_pred             CCCCcCEEECCCCcccc----cccccccCCCCCCEEECcCCCCCCCCChhHHhcCC----CCcEEEccCCcccc----cC
Q 047128            3 SLTSLVWLRLGKNKLSV----DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS----RMVVLILRSNKFHG----PL   70 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~----~L~~L~L~~n~l~~----~~   70 (312)
                      .+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++    +|++|++++|+++.    .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            46788888888888874    34566777888888888888887444555555566    68888988888873    44


Q ss_pred             CcCCCCCCCCcEEEccCCCCCcccchhhHh-----hcccccccccccccccccCCCCccc---eeeeeeeeeee---cCc
Q 047128           71 PTRLCDLPFLQILDIADTNLSGAIPNWINN-----LTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVS---KGE  139 (312)
Q Consensus        71 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~---~~~  139 (312)
                      +..+..+++|++|++++|.++...+..+..     .++|+.|++.+|.+.......+...   ......+....   ...
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            677888888888888888887554544433     3468888888887664221111000   00011111110   000


Q ss_pred             -ccchHH----HhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCcccc-----ChhhcCCCCCcEEECCC
Q 047128          140 -MVDYED----ILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRI-----PESIGVMTSLESIDFST  205 (312)
Q Consensus       140 -~~~~~~----~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~l~~  205 (312)
                       ......    ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence             111111    134788888888888753    4566677888888888888876432     22223577888888888


Q ss_pred             ccCCcc----CCccccCCCCCCeEecccCcccccCCCC------CCCCCCccccccCCCCCC
Q 047128          206 NQLSGE----IPESMSSLTFSNHLNLSNNNLTGKIPSS------TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       206 N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~~~------~~l~~l~~~~l~~n~l~~  257 (312)
                      |.+++.    ++..+..+++|++|++++|++++..+..      ....+++.+++++|.+.+
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence            888854    5666667888888888888876421110      122467788888887664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=7.6e-21  Score=177.10  Aligned_cols=206  Identities=22%  Similarity=0.290  Sum_probs=143.9

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++|++|+|++|+++. +|.   .+++|++|++++|.++ .+|.    .+++|+.|++++|+++ .+|..   +++|++
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~  145 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQE  145 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred             cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence            35788999999999874 554   6788888888888888 6666    3677888888888777 35543   367777


Q ss_pred             EEccCCCCCcccchhh---Hh--------------hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHH
Q 047128           83 LDIADTNLSGAIPNWI---NN--------------LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED  145 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~---~~--------------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (312)
                      |++++|.+++ +|..+   ..              +++|+.|++.+|.+.........  ...+...    ...+.....
T Consensus       146 L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~--L~~L~L~----~N~l~~l~~  218 (622)
T 3g06_A          146 LSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE--LYKLWAY----NNRLTSLPA  218 (622)
T ss_dssp             EECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT--CCEEECC----SSCCSSCCC
T ss_pred             EECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccch--hhEEECc----CCcccccCC
Confidence            7777777763 23221   11              25566666666666543221111  1111000    011111112


Q ss_pred             HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128          146 ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL  225 (312)
Q Consensus       146 ~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  225 (312)
                      .+++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus       219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            34789999999999995 55   45689999999999998 6666   5689999999999999 789899999999999


Q ss_pred             ecccCcccccCC
Q 047128          226 NLSNNNLTGKIP  237 (312)
Q Consensus       226 ~l~~N~l~~~~~  237 (312)
                      ++++|++++..+
T Consensus       290 ~L~~N~l~~~~~  301 (622)
T 3g06_A          290 NLEGNPLSERTL  301 (622)
T ss_dssp             ECCSCCCCHHHH
T ss_pred             EecCCCCCCcCH
Confidence            999999987654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.9e-23  Score=189.15  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             CcCEEECCCCcccc----cccccccCCCCCCEEECcCCCCCCCCChhHHh----cCCCCcEEEccCCcccccC----CcC
Q 047128            6 SLVWLRLGKNKLSV----DILVSLKNCTTLESLDVGENEFVGNIPTWIGE----RFSRMVVLILRSNKFHGPL----PTR   73 (312)
Q Consensus         6 ~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~----~l~~L~~L~L~~n~l~~~~----~~~   73 (312)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|+++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            68888888888763    44677777888888888888776333333322    2345777777777666422    333


Q ss_pred             CCCCCCCcEEEccCCCCCcccchhhHh-----hcccccccccccccc
Q 047128           74 LCDLPFLQILDIADTNLSGAIPNWINN-----LTGMVTSCSFTRSVQ  115 (312)
Q Consensus        74 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~  115 (312)
                      +..+++|++|++++|.+....+..+..     .+.|+.|++.+|.+.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            444556666666666554333322221     235555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=6.4e-21  Score=155.64  Aligned_cols=157  Identities=14%  Similarity=0.143  Sum_probs=134.2

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      -+.+++++|.++ .+|..+.  +.+++|++++|.+++..|...+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            368999999998 4666553  4578999999999944455555589999999999999998777789999999999999


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      +|.+++..+..|..+++                                              |++|++++|++++..|.
T Consensus        90 ~N~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           90 SNRLENVQHKMFKGLES----------------------------------------------LKTLMLRSNRITCVGND  123 (220)
T ss_dssp             SSCCCCCCGGGGTTCSS----------------------------------------------CCEEECTTSCCCCBCTT
T ss_pred             CCccCccCHhHhcCCcC----------------------------------------------CCEEECCCCcCCeECHh
Confidence            99999777766665554                                              88899999999988888


Q ss_pred             hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128          167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI  212 (312)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  212 (312)
                      .|..+++|++|++++|++++..|..+..+++|+.|++++|.+....
T Consensus       124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            9999999999999999999777889999999999999999988543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.5e-21  Score=171.30  Aligned_cols=175  Identities=21%  Similarity=0.174  Sum_probs=142.5

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCC-CCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLC-DLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS  109 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  109 (312)
                      -+.++++++.++ .+|..+.   ..++.|++++|++++..+..+. .+++|++|++++|+++...+..|..+++      
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~------   89 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN------   89 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT------
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC------
Confidence            368999999999 8998754   5689999999999977777777 8999999999999998666666655544      


Q ss_pred             cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128          110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP  189 (312)
Q Consensus       110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  189 (312)
                                                              |++|++++|+++...+..|..+++|++|+|++|++++..|
T Consensus        90 ----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  129 (361)
T 2xot_A           90 ----------------------------------------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR  129 (361)
T ss_dssp             ----------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ----------------------------------------CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence                                                    8889999999998778889999999999999999997778


Q ss_pred             hhhcCCCCCcEEECCCccCCccCCccc---cCCCCCCeEecccCcccccCCCC-CCCCC--CccccccCCCC
Q 047128          190 ESIGVMTSLESIDFSTNQLSGEIPESM---SSLTFSNHLNLSNNNLTGKIPSS-TQLQS--FDVSSFAGNDL  255 (312)
Q Consensus       190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~~~~-~~l~~--l~~~~l~~n~l  255 (312)
                      ..|..+++|+.|++++|++++..+..|   ..+++|+.|++++|+|+...+.. ..+..  ++.+++.+|++
T Consensus       130 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            889999999999999999995444445   56899999999999998654322 23333  35567777744

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=8.2e-21  Score=154.99  Aligned_cols=152  Identities=13%  Similarity=0.188  Sum_probs=131.2

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      +.++.+++.++ .+|..+.  +++++|++++|+++ .++...+..+++|+.|++++|++++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            57899999998 5666553  68999999999999 67765555899999999999999988899999999999999999


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      |.++...+..|..+++                                              |++|++++|.+++..|..
T Consensus        90 N~l~~l~~~~f~~l~~----------------------------------------------L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           90 NKITELPKSLFEGLFS----------------------------------------------LQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             SCCCCCCTTTTTTCTT----------------------------------------------CCEEECCSSCCCCCCTTT
T ss_pred             CcCCccCHhHccCCCC----------------------------------------------CCEEECCCCCCCEeCHHH
Confidence            9998554444544444                                              888999999999888889


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  209 (312)
                      |..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999999999999999999777777889999999999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=2.5e-20  Score=173.30  Aligned_cols=171  Identities=19%  Similarity=0.299  Sum_probs=108.4

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++|+.|++++|.+.. ++ .+..+++|++|+|++|++. .++. +. .+++|+.|+|++|++++ +| .+..+++|+.|
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            4555666666666552 22 3555666666666666665 4443 32 56666666666666652 22 45556666666


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.+...  ..+.                                              .+++|+.|++++|.+++.
T Consensus       115 ~Ls~N~l~~l--~~l~----------------------------------------------~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A          115 SLEHNGISDI--NGLV----------------------------------------------HLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             ECTTSCCCCC--GGGG----------------------------------------------GCTTCSEEECCSSCCCCC
T ss_pred             EecCCCCCCC--cccc----------------------------------------------CCCccCEEECCCCccCCc
Confidence            6666665532  1232                                              345577788888887754


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                        ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ ++ .+..+++|+.|++++|++++.
T Consensus       147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence              467778888888888888875444  6777888888888888874 33 467778888888888877764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1e-20  Score=161.05  Aligned_cols=193  Identities=19%  Similarity=0.262  Sum_probs=158.6

Q ss_pred             CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128           30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS  109 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  109 (312)
                      .+..+.+..+.+.+..+..   .+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|+.|++
T Consensus        25 ~~~~~~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHTTCSCTTSEECHH---HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHHHHhcCCCcccccchh---hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            3445567777777333322   68999999999999984 44 48889999999999999986554  899999999999


Q ss_pred             cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128          110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP  189 (312)
Q Consensus       110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  189 (312)
                      .+|.+....                        .+..+++|++|++++|++++.  ..+..+++|++|++++|++++ + 
T Consensus        98 ~~n~l~~~~------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-  149 (291)
T 1h6t_A           98 DENKVKDLS------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-  149 (291)
T ss_dssp             CSSCCCCGG------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-
T ss_pred             CCCcCCCCh------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-
Confidence            999876421                        234578899999999999953  468899999999999999984 4 


Q ss_pred             hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128          190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      ..+..+++|+.|++++|++++..+  +..+++|++|++++|++++. +....+++|+.+++.+|.+...|.
T Consensus       150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCCcc
Confidence            568899999999999999995544  88999999999999999874 456788999999999998876654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=7.8e-21  Score=166.08  Aligned_cols=214  Identities=14%  Similarity=0.060  Sum_probs=164.8

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCCCCcE-EEc
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLPFLQI-LDI   85 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l   85 (312)
                      ++++-++++++ .+|..+  .+++++|++++|+|+ .+|.+.+.++++|++|+|++|++.+.+| ..|.++++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            57888899998 567665  368999999999999 8998777689999999999999865555 46888988775 666


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC-CcccccC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR-NNFSGKI  164 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-n~i~~~~  164 (312)
                      +.|+++...|..|..+++|+.+++.+|.+....+....                      ...++..+++.+ +.+....
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----------------------HSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC----------------------CBSSCEEEEEESCTTCCEEC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhc----------------------ccchhhhhhhcccccccccc
Confidence            77999978888999999999999999988754432221                      133466788855 6677666


Q ss_pred             ChhhhcCC-CCCEEEccCCCCccccChhhcCCCCCcEEECCC-ccCCccCCccccCCCCCCeEecccCcccccCCCC-CC
Q 047128          165 PLEVTNLK-ALHSLNFSYNSFTRRIPESIGVMTSLESIDFST-NQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQ  241 (312)
Q Consensus       165 p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~  241 (312)
                      +..|..+. .++.|++++|+++ .+|......++|+++++++ |.++...++.|..+++|++|++++|+|+..++.. ..
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~  224 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  224 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred             ccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence            66777664 6899999999998 5665555667899999985 6777444457899999999999999999766543 33


Q ss_pred             CCCCccc
Q 047128          242 LQSFDVS  248 (312)
Q Consensus       242 l~~l~~~  248 (312)
                      +.+|+.+
T Consensus       225 L~~L~~l  231 (350)
T 4ay9_X          225 LKKLRAR  231 (350)
T ss_dssp             CCEEECT
T ss_pred             chHhhhc
Confidence            4444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=9.3e-21  Score=152.03  Aligned_cols=154  Identities=16%  Similarity=0.248  Sum_probs=109.9

Q ss_pred             cCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccc
Q 047128           26 KNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMV  105 (312)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  105 (312)
                      ..+++|++|++++|.+. .+| .+. .+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..     
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSG-----  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcC-----
Confidence            44567777777777777 666 443 6777777777777665 2 235677777777777777776544444433     


Q ss_pred             cccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC-C
Q 047128          106 TSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS-F  184 (312)
Q Consensus       106 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l  184 (312)
                                                               +++|++|++++|.+++..+..+..+++|++|++++|+ +
T Consensus       111 -----------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          111 -----------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             -----------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             -----------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence                                                     3347788888888887777888888888888888887 6


Q ss_pred             ccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       185 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      + .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            5 555 47788888889988888884 44 57788888888888888753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=1.2e-20  Score=151.38  Aligned_cols=153  Identities=22%  Similarity=0.320  Sum_probs=126.3

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+..+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3578999999999998 555 6889999999999999887 554 454 7999999999999999878888999999999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc-cc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN-FS  161 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~  161 (312)
                      |++++|.+++..+..+..+++                                              |++|++++|. ++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~----------------------------------------------L~~L~L~~n~~i~  150 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPK----------------------------------------------VNSIDLSYNGAIT  150 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSS----------------------------------------------CCEEECCSCTBCC
T ss_pred             EEecCCccCcHhHHHHhhCCC----------------------------------------------CCEEEccCCCCcc
Confidence            999999998767766665554                                              7778888887 66


Q ss_pred             ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCc
Q 047128          162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG  210 (312)
Q Consensus       162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  210 (312)
                       .+| .+..+++|++|++++|.++ .++ .+..+++|+.|++++|++.+
T Consensus       151 -~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          151 -DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC----
T ss_pred             -ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccCC
Confidence             455 6888999999999999998 455 57888999999999998863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=4.9e-21  Score=160.61  Aligned_cols=170  Identities=18%  Similarity=0.277  Sum_probs=129.3

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      .+++.++++++.+++. + .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|++++. +. +..+++|++|+
T Consensus        19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence            3455566777777633 3 5667778888888888877 676 444 678888888888888743 33 77788888888


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|++++ +|...                                                .++|+.|++++|++++ .
T Consensus        92 L~~N~l~~-l~~~~------------------------------------------------~~~L~~L~L~~N~l~~-~  121 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP------------------------------------------------SACLSRLFLDNNELRD-T  121 (263)
T ss_dssp             CCSSCCSC-CTTCC------------------------------------------------CSSCCEEECCSSCCSB-S
T ss_pred             CCCCccCC-cCccc------------------------------------------------cCcccEEEccCCccCC-C
Confidence            88887763 22100                                                0348899999999985 3


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI  236 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  236 (312)
                      + .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.+
T Consensus       122 ~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          122 D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            3 58899999999999999984 44 578899999999999999955  66888999999999999998763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=4.6e-21  Score=178.27  Aligned_cols=191  Identities=21%  Similarity=0.337  Sum_probs=144.0

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT   88 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n   88 (312)
                      .+.+..+.+....  .+..+++|+.|++++|.+. .+|. +. .+++|+.|+|++|++++..+  +..+++|+.|++++|
T Consensus        25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            3445555555332  2345667777777777777 5653 33 67777777777777774333  677777777777777


Q ss_pred             CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhh
Q 047128           89 NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV  168 (312)
Q Consensus        89 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~  168 (312)
                      .+.+ ++ .+.                                              .+++|+.|++++|.+++ + ..+
T Consensus        98 ~l~~-l~-~l~----------------------------------------------~l~~L~~L~Ls~N~l~~-l-~~l  127 (605)
T 1m9s_A           98 KIKD-LS-SLK----------------------------------------------DLKKLKSLSLEHNGISD-I-NGL  127 (605)
T ss_dssp             CCCC-CT-TST----------------------------------------------TCTTCCEEECTTSCCCC-C-GGG
T ss_pred             CCCC-Ch-hhc----------------------------------------------cCCCCCEEEecCCCCCC-C-ccc
Confidence            7763 21 122                                              24568999999999995 3 468


Q ss_pred             hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccc
Q 047128          169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVS  248 (312)
Q Consensus       169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~  248 (312)
                      ..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++..|  +..+++|+.|++++|+|++. +....+++|+.+
T Consensus       128 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L  202 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL  202 (605)
T ss_dssp             GGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred             cCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEE
Confidence            899999999999999984 4 568899999999999999996655  88999999999999999975 566788999999


Q ss_pred             cccCCCCCCCCCC
Q 047128          249 SFAGNDLCGAPIP  261 (312)
Q Consensus       249 ~l~~n~l~~~p~~  261 (312)
                      ++.+|.+.+.|..
T Consensus       203 ~L~~N~l~~~p~~  215 (605)
T 1m9s_A          203 ELFSQECLNKPIN  215 (605)
T ss_dssp             ECCSEEEECCCCC
T ss_pred             EccCCcCcCCccc
Confidence            9999988776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.6e-19  Score=148.25  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=128.5

Q ss_pred             cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128            7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA   86 (312)
Q Consensus         7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~   86 (312)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..+. .+++|+.|++++|+++...+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            467899999987 5665543  8899999999999944455554 89999999999999986656668999999999999


Q ss_pred             CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128           87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      +|.++...+..|..+++                                              |++|++++|+++ .+|.
T Consensus        97 ~N~l~~l~~~~~~~l~~----------------------------------------------L~~L~Ls~N~l~-~lp~  129 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVH----------------------------------------------LKELFMCCNKLT-ELPR  129 (229)
T ss_dssp             SSCCCCCCTTTTTTCTT----------------------------------------------CCEEECCSSCCC-SCCT
T ss_pred             CCcCCccChhHhCcchh----------------------------------------------hCeEeccCCccc-ccCc
Confidence            99998665555554444                                              888999999999 7788


Q ss_pred             hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128          167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI  212 (312)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  212 (312)
                      .+..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            8899999999999999998666677888999999999999988543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=9e-20  Score=167.99  Aligned_cols=179  Identities=21%  Similarity=0.282  Sum_probs=149.7

Q ss_pred             CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128           30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS  109 (312)
Q Consensus        30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  109 (312)
                      ++++|++++|.++ .+|..++   ++|+.|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            8999999999999 6998763   78999999999999 677   457899999999999996 666 554  8999999


Q ss_pred             cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128          110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP  189 (312)
Q Consensus       110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  189 (312)
                      .+|.+.....                          .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|
T Consensus       128 s~N~l~~lp~--------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp  176 (571)
T 3cvr_A          128 DNNQLTMLPE--------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP  176 (571)
T ss_dssp             CSSCCSCCCC--------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCCcCCCCCC--------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence            9998875211                          25679999999999995 665   57899999999999984 77


Q ss_pred             hhhcCCCCCcEEECCCccCCccCCccccCCCCC-------CeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128          190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-------NHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA  258 (312)
Q Consensus       190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~  258 (312)
                      . +.  ++|+.|++++|+|+ .+|. +..  +|       +.|++++|+|+..++....+++++.+++++|.+++.
T Consensus       177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            7 65  89999999999999 7777 554  67       999999999997666567799999999999988753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=1.4e-19  Score=144.50  Aligned_cols=63  Identities=24%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc-CCCCCCCCcEEEccCCCCCcccchhh
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-RLCDLPFLQILDIADTNLSGAIPNWI   98 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~   98 (312)
                      +++++++|+++ .+|..++   .++++|++++|++++..+. .|..+++|++|++++|.+++..|..|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   74 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc
Confidence            45566666665 5555443   2555556666555533332 24455555555555555554444333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.80  E-value=9.4e-22  Score=181.78  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=108.4

Q ss_pred             cCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-------------ccccCCcCCCCCCCCcEEE-ccCCCCC
Q 047128           26 KNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-------------FHGPLPTRLCDLPFLQILD-IADTNLS   91 (312)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~   91 (312)
                      ..+++|+.|++++|+++ .+|..+. .+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34556666666666665 5666665 56666666665443             2334444555556666665 4444322


Q ss_pred             cccch------hhHh--hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           92 GAIPN------WINN--LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        92 ~~~~~------~~~~--l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                       .++.      .+..  ...|+.|++.+|.+...                       +. +..+++|+.|++++|.++ .
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-----------------------p~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-----------------------CH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-----------------------CC-GGGGTTCCEEECCSSCCC-C
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-----------------------cC-ccccccCcEeecCccccc-c
Confidence             1110      0011  11234444444443321                       11 233555777777777777 6


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCcccccCCCC
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      +|..+..+++|+.|+|++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++++.++..
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            67777777777777777777773 56 5677777777777777777554 777777777777777777777766544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=1.6e-19  Score=144.17  Aligned_cols=88  Identities=19%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      |++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            55566666666655566666666666666666666655555566666666666666666655566666666666666666


Q ss_pred             CcccccCC
Q 047128          230 NNLTGKIP  237 (312)
Q Consensus       230 N~l~~~~~  237 (312)
                      |+++|.++
T Consensus       136 N~l~c~c~  143 (192)
T 1w8a_A          136 NPFNCNCH  143 (192)
T ss_dssp             CCBCCSGG
T ss_pred             CCccCcCc
Confidence            66665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=7.2e-20  Score=153.45  Aligned_cols=173  Identities=16%  Similarity=0.259  Sum_probs=141.8

Q ss_pred             CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      ++.++..++++++.++ .++ .+. .+++|+.|++++|+++ .++ .+..+++|++|++++|++++..+  +..+     
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l-----   84 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDL-----   84 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-----
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccC-----
Confidence            4566778889999998 666 344 7999999999999998 555 68889999999999999985433  4333     


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR  186 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~  186 (312)
                                                               ++|++|++++|++++ +|. +.. ++|++|++++|++++
T Consensus        85 -----------------------------------------~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           85 -----------------------------------------TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             -----------------------------------------SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB
T ss_pred             -----------------------------------------CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC
Confidence                                                     448889999999985 443 233 999999999999984


Q ss_pred             ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128          187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~  260 (312)
                       ++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++++. +....+++|+.+++++|.+.+.|.
T Consensus       121 -~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          121 -TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence             44 48899999999999999995 44 588999999999999999987 666788999999999998876654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=8.1e-20  Score=173.73  Aligned_cols=147  Identities=15%  Similarity=0.168  Sum_probs=86.1

Q ss_pred             cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128           52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK  131 (312)
Q Consensus        52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  131 (312)
                      .++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|++.+|.+.. ++            
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp------------  286 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LP------------  286 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CC------------
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cC------------
Confidence            5666666666666666 45555556666666666666666 556666666665555555555441 11            


Q ss_pred             eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCC-CCcEEECCCccCCc
Q 047128          132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMT-SLESIDFSTNQLSG  210 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~  210 (312)
                                ..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+.... .+..+++++|.+++
T Consensus       287 ----------~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          287 ----------AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             ----------SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             ----------hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence                      11233556777888888777 5666677788888888888888777776654332 12346677777776


Q ss_pred             cCCccccCCCCCCeEecccC
Q 047128          211 EIPESMSSLTFSNHLNLSNN  230 (312)
Q Consensus       211 ~~p~~~~~l~~L~~L~l~~N  230 (312)
                      .+|..      |+.|+++.|
T Consensus       356 ~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          356 PLPHE------RRFIEINTD  369 (727)
T ss_dssp             CCCCC---------------
T ss_pred             cCccc------cceeEeecc
Confidence            66653      344455554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=8.6e-18  Score=134.14  Aligned_cols=88  Identities=24%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      |++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++
T Consensus        56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            66677777777766667788888888888888888866677788888888888888888855555688888899999999


Q ss_pred             CcccccCC
Q 047128          230 NNLTGKIP  237 (312)
Q Consensus       230 N~l~~~~~  237 (312)
                      |++.|.+.
T Consensus       136 N~~~C~c~  143 (193)
T 2wfh_A          136 NPLYCDCN  143 (193)
T ss_dssp             SCEECSGG
T ss_pred             CCeecCCc
Confidence            98887553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=2e-21  Score=179.59  Aligned_cols=188  Identities=15%  Similarity=0.151  Sum_probs=151.8

Q ss_pred             cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCC-------------CCcccchhhHhhccccccc-ccccccccc
Q 047128           52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTN-------------LSGAIPNWINNLTGMVTSC-SFTRSVQQY  117 (312)
Q Consensus        52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~l~-l~~n~~~~~  117 (312)
                      ..++|+.|++++|+++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.++ +..|.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            5789999999999998 789999999999999997764             5567788889999999888 555543321


Q ss_pred             cCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCC
Q 047128          118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTS  197 (312)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  197 (312)
                      ....+.             ...+..  -....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++
T Consensus       426 ~~l~l~-------------~n~i~~--l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          426 RSKFLL-------------ENSVLK--MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             HHHHHH-------------HHHHHH--HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             hhhhhh-------------cccccc--cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence            100000             000000  012358999999999995 665 999999999999999999 88999999999


Q ss_pred             CcEEECCCccCCccCCccccCCCCCCeEecccCcccccC--CCCCCCCCCccccccCCCCCCCCC
Q 047128          198 LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI--PSSTQLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       198 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~l~~~~l~~n~l~~~p~  260 (312)
                      |+.|++++|++++ +| .+..+++|+.|++++|++++..  .....+++|+.+++++|.+++.|.
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999999999995 77 7999999999999999999984  455789999999999999988765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=6.1e-18  Score=131.94  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             CCCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           28 CTTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        28 l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      .++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++   
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---   96 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN---   96 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT---
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC---
Confidence            466777777777776 56666544 677777777777777743  55667777777777777776545544433333   


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC-hhhhcCCCCCEEEccCCCCc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALHSLNFSYNSFT  185 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~  185 (312)
                                                                 |++|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus        97 -------------------------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           97 -------------------------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             -------------------------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             -------------------------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence                                                       5556666666653221 45556666666666666665


Q ss_pred             cccC---hhhcCCCCCcEEECCCccCC
Q 047128          186 RRIP---ESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       186 ~~~p---~~~~~l~~L~~L~l~~N~l~  209 (312)
                      +..+   ..+..+++|+.|++++|.+.
T Consensus       134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          134 NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             chHHHHHHHHHhCccCcEecCCCCChh
Confidence            3322   24555566666666666555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=4.9e-18  Score=132.49  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=109.9

Q ss_pred             CCCCcEEEccCCccc-ccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128           53 FSRMVVLILRSNKFH-GPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK  131 (312)
Q Consensus        53 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  131 (312)
                      .++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            478899999999987 66777788888999999999888744  22222                               


Q ss_pred             eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcccc-ChhhcCCCCCcEEECCCccCCc
Q 047128          132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRI-PESIGVMTSLESIDFSTNQLSG  210 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~  210 (312)
                                     +++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++
T Consensus        70 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           70 ---------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             ---------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             ---------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence                           345888999999999778888888999999999999998432 2678889999999999999995


Q ss_pred             cCC---ccccCCCCCCeEecccCcccccCC
Q 047128          211 EIP---ESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       211 ~~p---~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      ..+   ..+..+++|++|++++|.+...+.
T Consensus       135 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          135 LNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             STTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             hHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            444   378889999999999998875543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=5.1e-19  Score=168.25  Aligned_cols=182  Identities=15%  Similarity=0.134  Sum_probs=118.2

Q ss_pred             CCCCEEECcCCCCCCCCChhHHhcCCC-----CcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128           29 TTLESLDVGENEFVGNIPTWIGERFSR-----MVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG  103 (312)
Q Consensus        29 ~~L~~L~l~~n~l~~~lp~~~~~~l~~-----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  103 (312)
                      +.++.|++.+|.+. ..+..+. ....     +..++++.|.+. ..+..+..+++|+.|++++|.+. .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCC-cchhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            55788888888887 5565544 2222     333445556665 66788999999999999999998 77777779999


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS  183 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~  183 (312)
                      |+.|++.+|.+.. +                      +..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus       249 L~~L~Ls~N~l~~-l----------------------p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          249 LTRLYLNGNSLTE-L----------------------PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             CSCCBCTTSCCSC-C----------------------CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred             CCEEEeeCCcCcc-c----------------------ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC
Confidence            9999999998862 2                      333456889999999999999 779999999999999999999


Q ss_pred             CccccChhhcCCCCCcEEECCCccCCccCCccccCCCC-CCeEecccCcccccCCCC
Q 047128          184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF-SNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~~~~  239 (312)
                      ++ .+|..|+.+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|..
T Consensus       305 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          305 VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             CC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            98 88888999999999999999999888887754322 234789999999877753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.9e-17  Score=129.25  Aligned_cols=88  Identities=19%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      |++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            44455555555544444455566666666666666644444455666666666666666644444455666677777777


Q ss_pred             CcccccCC
Q 047128          230 NNLTGKIP  237 (312)
Q Consensus       230 N~l~~~~~  237 (312)
                      |++++.++
T Consensus       134 N~~~~~~~  141 (177)
T 2o6r_A          134 NPWDCSCP  141 (177)
T ss_dssp             SCBCCCHH
T ss_pred             CCeeccCc
Confidence            77666544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=131.56  Aligned_cols=127  Identities=19%  Similarity=0.282  Sum_probs=76.8

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFT  111 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  111 (312)
                      +++++++|.++ .+|..++   +++++|++++|+++ .+|..|..+++|++|++++|.++...+..|..+++        
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~--------   79 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ--------   79 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT--------
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC--------
Confidence            45666666666 5665432   45666666666665 45555666666666666666666444444443333        


Q ss_pred             cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128          112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES  191 (312)
Q Consensus       112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  191 (312)
                                                            |++|++++|.+++..+..|..+++|++|+|++|+++...+..
T Consensus        80 --------------------------------------L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           80 --------------------------------------LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             --------------------------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             --------------------------------------CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence                                                  555666666666555556666667777777777766444445


Q ss_pred             hcCCCCCcEEECCCccCC
Q 047128          192 IGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       192 ~~~l~~L~~L~l~~N~l~  209 (312)
                      +..+++|+.|++++|.+.
T Consensus       122 ~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCEE
T ss_pred             hhcCccccEEEeCCCCee
Confidence            666667777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.6e-17  Score=126.91  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccc-cChhhcCCCCCcEEECCCccCCccCC---ccccCCCCCCeE
Q 047128          150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR-IPESIGVMTSLESIDFSTNQLSGEIP---ESMSSLTFSNHL  225 (312)
Q Consensus       150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L  225 (312)
                      |++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|
T Consensus        66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            44455555555543444444455555555555555421 12444555555555555555553332   244555555555


Q ss_pred             ecc
Q 047128          226 NLS  228 (312)
Q Consensus       226 ~l~  228 (312)
                      +++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.5e-17  Score=141.64  Aligned_cols=202  Identities=9%  Similarity=0.052  Sum_probs=128.0

Q ss_pred             CChhHHhc--------CCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccccccc--
Q 047128           45 IPTWIGER--------FSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSV--  114 (312)
Q Consensus        45 lp~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~--  114 (312)
                      +|...|.+        +++|+.+++.+ .++.+.+.+|.++++|+.++++.|.+..+.+.+|.....+..+....+..  
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~  162 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR  162 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence            45555556        77777777777 66655556677777777777777777655556666655555544433211  


Q ss_pred             --ccccCCCCccce----------------------------eeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128          115 --QQYLPLPIDVGV----------------------------ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus       115 --~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                        ..+....+....                            ....................+++|+.+++++|+++...
T Consensus       163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~  242 (329)
T 3sb4_A          163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP  242 (329)
T ss_dssp             TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred             ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec
Confidence              000000000000                            00000000000111112234688999999999999777


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCc-EEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE-SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQL  242 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l  242 (312)
                      +.+|.++.+|+++++.+| ++...+.+|.++++|+ .+++.+ .++...+..|..+++|+.+++++|+++...+.. ...
T Consensus       243 ~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          243 DFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             HhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            778999999999999988 7656667788999999 999998 787566788999999999999999888665533 445


Q ss_pred             CCCcccc
Q 047128          243 QSFDVSS  249 (312)
Q Consensus       243 ~~l~~~~  249 (312)
                      .+|+.++
T Consensus       321 ~~L~~ly  327 (329)
T 3sb4_A          321 VPSKLIY  327 (329)
T ss_dssp             CCCCEEE
T ss_pred             cchhhhc
Confidence            5555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=2.8e-17  Score=125.57  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=95.0

Q ss_pred             CCCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           28 CTTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        28 l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      .++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++   
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN---   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---
T ss_pred             CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC---
Confidence            356788888888887 56776554 788888888888888754  66788888888888888887656665554544   


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc-CChhhhcCCCCCEEEccCCCCc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK-IPLEVTNLKALHSLNFSYNSFT  185 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~  185 (312)
                                                                 |++|++++|.+++. .+..+..+++|++|++++|.++
T Consensus        90 -------------------------------------------L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           90 -------------------------------------------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             -------------------------------------------CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             -------------------------------------------CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                                                       67788888887753 2366778888888888888887


Q ss_pred             cccC---hhhcCCCCCcEEECCC
Q 047128          186 RRIP---ESIGVMTSLESIDFST  205 (312)
Q Consensus       186 ~~~p---~~~~~l~~L~~L~l~~  205 (312)
                      +..+   ..+..+++|+.|++++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             chHHHHHHHHHHCCCcccccCCC
Confidence            5444   3677788888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=7.7e-17  Score=126.80  Aligned_cols=133  Identities=20%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF  110 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  110 (312)
                      .+.+++++++++ .+|..+   .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..++        
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------   76 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT--------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC--------
Confidence            456777777777 667543   35777777777777755555567777777777777777644443343333        


Q ss_pred             ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128          111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE  190 (312)
Q Consensus       111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  190 (312)
                                                            +|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        77 --------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           77 --------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             --------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             --------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence                                                  366677777777766666667778888888888887754445


Q ss_pred             hhcCCCCCcEEECCCccCCccCC
Q 047128          191 SIGVMTSLESIDFSTNQLSGEIP  213 (312)
Q Consensus       191 ~~~~l~~L~~L~l~~N~l~~~~p  213 (312)
                      .+..+++|++|++++|.+.+..|
T Consensus       119 ~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          119 IFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCcccCEEEecCCCeeccCc
Confidence            55677788888888887775443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=1.9e-16  Score=124.48  Aligned_cols=134  Identities=16%  Similarity=0.176  Sum_probs=87.1

Q ss_pred             cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128           24 SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG  103 (312)
Q Consensus        24 ~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  103 (312)
                      .+.++++|++|++++|.++ .+|. +....++|+.|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4567888888888888888 6754 442334888888888888854  56777888888888888777443333344433


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh--hhhcCCCCCEEEccC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL--EVTNLKALHSLNFSY  181 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~--~~~~l~~L~~L~Ls~  181 (312)
                                                                    |++|++++|.++ .+|.  .+..+++|++|++++
T Consensus        90 ----------------------------------------------L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           90 ----------------------------------------------LTELILTNNSLV-ELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             ----------------------------------------------CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             ----------------------------------------------CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence                                                          566666666665 3333  555666666666666


Q ss_pred             CCCccccChh----hcCCCCCcEEECCCccCC
Q 047128          182 NSFTRRIPES----IGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       182 n~l~~~~p~~----~~~l~~L~~L~l~~N~l~  209 (312)
                      |.++ .+|..    +..+++|+.|++++|.+.
T Consensus       123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6665 44442    555666666666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=3e-18  Score=159.79  Aligned_cols=252  Identities=13%  Similarity=0.041  Sum_probs=109.5

Q ss_pred             CCCCcCEEECCCCccc---ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCC
Q 047128            3 SLTSLVWLRLGKNKLS---VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLP   78 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~   78 (312)
                      ++++|++|+++.....   ...+..+..+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            3566677776543221   122334455556666666554333 4444433 45566666666665442211 1234555


Q ss_pred             CCcEEEccCCCCC-cccchhhHhhcccccccccc-----------cccccccCCCCccceeeeeeeee----eecCcccc
Q 047128           79 FLQILDIADTNLS-GAIPNWINNLTGMVTSCSFT-----------RSVQQYLPLPIDVGVILVEKASV----VSKGEMVD  142 (312)
Q Consensus        79 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~-----------n~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  142 (312)
                      +|++|+++ +.+. ...+.....+++|+.|++.+           +.++......+.........+..    ........
T Consensus       319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            55555555 2222 11222234445555555552           22221000000000000000000    00011111


Q ss_pred             hHHHhccccEEEcC----CCccccc-----CChhhhcCCCCCEEEccCCC--CccccChhh-cCCCCCcEEECCCccCCc
Q 047128          143 YEDILNLVRMIDIS----RNNFSGK-----IPLEVTNLKALHSLNFSYNS--FTRRIPESI-GVMTSLESIDFSTNQLSG  210 (312)
Q Consensus       143 ~~~~~~~L~~L~ls----~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~~-~~l~~L~~L~l~~N~l~~  210 (312)
                      ....+++|+.|+++    .|.+++.     ++..+..+++|++|+++.|.  +++..+..+ ..+++|++|++++|.+++
T Consensus       398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  477 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD  477 (592)
T ss_dssp             HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred             HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence            22235556666664    4455532     22224455666666665332  433333323 235566666666666654


Q ss_pred             c-CCccccCCCCCCeEecccCccccc-CCCC-CCCCCCccccccCCCCCC
Q 047128          211 E-IPESMSSLTFSNHLNLSNNNLTGK-IPSS-TQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       211 ~-~p~~~~~l~~L~~L~l~~N~l~~~-~~~~-~~l~~l~~~~l~~n~l~~  257 (312)
                      . ++..+..+++|++|++++|++++. ++.. ..+++|+.+++++|.+++
T Consensus       478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            2 233344556666666666665432 1111 234556666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1.5e-16  Score=124.96  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=103.6

Q ss_pred             cCCCCcEEEccCCcccccCCcCCCCCC-CCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeee
Q 047128           52 RFSRMVVLILRSNKFHGPLPTRLCDLP-FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVE  130 (312)
Q Consensus        52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  130 (312)
                      .+.+|+.|++++|+++ .+|. +..+. +|++|++++|.+++.  ..+..                              
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~------------------------------   62 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPL------------------------------   62 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCC------------------------------
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--ccccc------------------------------
Confidence            5778888999999888 4454 44444 888889888888743  22222                              


Q ss_pred             eeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh--hhcCCCCCcEEECCCccC
Q 047128          131 KASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE--SIGVMTSLESIDFSTNQL  208 (312)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~N~l  208 (312)
                                      +++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+.|++++|.+
T Consensus        63 ----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           63 ----------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             ----------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ----------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence                            445888999999999666566689999999999999997 6665  788899999999999999


Q ss_pred             CccCCcc----ccCCCCCCeEecccCcccc
Q 047128          209 SGEIPES----MSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       209 ~~~~p~~----~~~l~~L~~L~l~~N~l~~  234 (312)
                      + .+|..    +..+++|+.||+++|.+..
T Consensus       126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             G-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             C-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8 56664    7889999999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.65  E-value=2.3e-18  Score=138.16  Aligned_cols=154  Identities=19%  Similarity=0.252  Sum_probs=85.8

Q ss_pred             cCCCCCCEEECcCCCCCCCCCh------hHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhH
Q 047128           26 KNCTTLESLDVGENEFVGNIPT------WIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWIN   99 (312)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~~lp~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   99 (312)
                      .....++.++++++.+.+.+|.      .+. .+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            3344455555555555544443      554 67777777777777774 55 6677777777777777776 4454444


Q ss_pred             hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEc
Q 047128          100 NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF  179 (312)
Q Consensus       100 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~L  179 (312)
                      .+++                                              |++|++++|++++ +| .+..+++|++|++
T Consensus        91 ~~~~----------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           91 VADT----------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHH----------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             cCCc----------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            4444                                              4455555555553 22 3455555555555


Q ss_pred             cCCCCccccC-hhhcCCCCCcEEECCCccCCccCCc----------cccCCCCCCeEecccCccc
Q 047128          180 SYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPE----------SMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       180 s~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~----------~~~~l~~L~~L~l~~N~l~  233 (312)
                      ++|++++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +|.++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            5555552111 2345555566666666655544332          145566666654  44443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=5.8e-17  Score=151.11  Aligned_cols=252  Identities=10%  Similarity=0.032  Sum_probs=142.2

Q ss_pred             CCCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCC----CCChhHHhcCCCCcEEEccCCcccccCCc--
Q 047128            3 SLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVG----NIPTWIGERFSRMVVLILRSNKFHGPLPT--   72 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--   72 (312)
                      ++++|++|+|++|.+++.    ++..+.++++|++|++++|.+.+    .++..+ ..+++|+.|++++|.+.+ ++.  
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHH-HHHHH
Confidence            467888888888887644    33344567778888888887761    222222 357778888887776653 222  


Q ss_pred             -------------------------CCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCC---Ccc
Q 047128           73 -------------------------RLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP---IDV  124 (312)
Q Consensus        73 -------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~---~~~  124 (312)
                                               .+..+++|+.++++++.. ...|..+..+++|+.|++.+|.+.......   ...
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence                                     233334444444444322 244555666667777777666543211000   000


Q ss_pred             ce---------------------eeeeeeeeee---------------cCcccchHHHhccccEEEcCCCcccccCChhh
Q 047128          125 GV---------------------ILVEKASVVS---------------KGEMVDYEDILNLVRMIDISRNNFSGKIPLEV  168 (312)
Q Consensus       125 ~~---------------------~~~~~~~~~~---------------~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~  168 (312)
                      ..                     .....+....               ..........+++|++|+++.|.+++..+..+
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            00                     0011111110               00112223445667777776666665555555


Q ss_pred             hc-CCCCCEEEcc----CCCCccc-----cChhhcCCCCCcEEECCCc--cCCccCCcccc-CCCCCCeEecccCccccc
Q 047128          169 TN-LKALHSLNFS----YNSFTRR-----IPESIGVMTSLESIDFSTN--QLSGEIPESMS-SLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       169 ~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~  235 (312)
                      .. +++|++|+++    .|.+++.     ++..+..+++|++|+++++  .+++..+..+. .+++|++|++++|++++.
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence            44 7777777775    5566632     3333556778888888643  36655444443 478899999999988752


Q ss_pred             -CCC-CCCCCCCccccccCCCCCC
Q 047128          236 -IPS-STQLQSFDVSSFAGNDLCG  257 (312)
Q Consensus       236 -~~~-~~~l~~l~~~~l~~n~l~~  257 (312)
                       ++. ...+++|+.+++++|.+++
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHHHHhcCcccCeeeccCCCCcH
Confidence             222 2456888899999997653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=2.7e-18  Score=137.69  Aligned_cols=152  Identities=18%  Similarity=0.168  Sum_probs=111.0

Q ss_pred             CCCcCEEECCCCcccccccc------cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCC
Q 047128            4 LTSLVWLRLGKNKLSVDILV------SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDL   77 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   77 (312)
                      .+.++.++++.+.+++..|.      .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|+++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence            45566677777777666555      7888888888888888888 577 554 7888888888888888 567666667


Q ss_pred             CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128           78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR  157 (312)
Q Consensus        78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  157 (312)
                      ++|++|++++|.+++ +| .+..+                                              ++|++|++++
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l----------------------------------------------~~L~~L~l~~  124 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKL----------------------------------------------VNLRVLYMSN  124 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHH----------------------------------------------HHSSEEEESE
T ss_pred             CcCCEEECcCCcCCc-CC-ccccC----------------------------------------------CCCCEEECCC
Confidence            888888888888874 33 34333                                              3477788888


Q ss_pred             CcccccCC-hhhhcCCCCCEEEccCCCCccccCh----------hhcCCCCCcEEECCCccCC
Q 047128          158 NNFSGKIP-LEVTNLKALHSLNFSYNSFTRRIPE----------SIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       158 n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~l~~N~l~  209 (312)
                      |.+++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +|.++
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            88874332 4677888888888888888755443          266788888876  66665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=3.9e-15  Score=116.16  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      ++++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            48889999999998888899999999999999999997667778899999999999999997666679999999999999


Q ss_pred             cCcccccCCCC
Q 047128          229 NNNLTGKIPSS  239 (312)
Q Consensus       229 ~N~l~~~~~~~  239 (312)
                      +|++++.++..
T Consensus       111 ~N~~~c~c~~l  121 (170)
T 3g39_A          111 NNPWDCACSDI  121 (170)
T ss_dssp             SSCBCTTBGGG
T ss_pred             CCCCCCCchhH
Confidence            99999877643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=7.6e-15  Score=126.91  Aligned_cols=103  Identities=11%  Similarity=-0.063  Sum_probs=84.0

Q ss_pred             hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCC-EEEc
Q 047128          101 LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH-SLNF  179 (312)
Q Consensus       101 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~-~L~L  179 (312)
                      +++|+.+++..|.+....                      ...|..+++|+.+++.+| ++...+.+|.++++|+ .+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~----------------------~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIP----------------------DFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             CTTCCEEECTTBCCCEEC----------------------TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred             cCCCeEEECCCCCcceec----------------------HhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence            566777777766655332                      234556788999999998 8767788999999999 9999


Q ss_pred             cCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128          180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL  227 (312)
Q Consensus       180 s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  227 (312)
                      .+ .++...+.+|.++++|+.+++++|+++...+..|..+++|+.++.
T Consensus       282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            98 777566788999999999999999999777779999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.57  E-value=1.6e-16  Score=139.53  Aligned_cols=170  Identities=16%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             CCcCEEECCCCccccccccccc-----CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCC-----
Q 047128            5 TSLVWLRLGKNKLSVDILVSLK-----NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRL-----   74 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----   74 (312)
                      ++|++|+|++|.++......+.     ..++|++|++++|.+++.....+...+++|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4556666666666533222221     124566666666665532222333344556666666666543221211     


Q ss_pred             CCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEE
Q 047128           75 CDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID  154 (312)
Q Consensus        75 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  154 (312)
                      ...++|++|++++|.++......+.                                          ..+...++|++|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~------------------------------------------~~L~~~~~L~~L~  189 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLM------------------------------------------EGLAGNTSVTHLS  189 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHH------------------------------------------HHHHTCSSCCEEE
T ss_pred             hcCCccceeeCCCCCCChHHHHHHH------------------------------------------HHHhcCCCcCEEe
Confidence            2345566666666655422111110                                          1111234466777


Q ss_pred             cCCCcccccC----ChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccCCccc
Q 047128          155 ISRNNFSGKI----PLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEIPESM  216 (312)
Q Consensus       155 ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  216 (312)
                      +++|.+++..    +..+...++|++|+|++|.++..    ++..+...++|++|++++|.|++.....+
T Consensus       190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            7777766432    34455566777777777777632    22334455677777777777764443333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=1.5e-14  Score=113.31  Aligned_cols=91  Identities=20%  Similarity=0.198  Sum_probs=80.5

Q ss_pred             cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                      +|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            48899999999998888899999999999999999996656667899999999999999996555668999999999999


Q ss_pred             cCcccccCCCC
Q 047128          229 NNNLTGKIPSS  239 (312)
Q Consensus       229 ~N~l~~~~~~~  239 (312)
                      +|++.+.++..
T Consensus       114 ~N~~~c~~~~~  124 (174)
T 2r9u_A          114 NNPWDCECRDI  124 (174)
T ss_dssp             SSCBCTTBGGG
T ss_pred             CCCcccccccH
Confidence            99999876543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=6.1e-16  Score=144.22  Aligned_cols=248  Identities=11%  Similarity=-0.005  Sum_probs=146.0

Q ss_pred             CCCCcCEEECCCCccccccccccc-CCCCCCEEECcCC-CCCCCCChhHHhcCCCCcEEEccCCcccccCCc----CCCC
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLK-NCTTLESLDVGEN-EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT----RLCD   76 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~   76 (312)
                      ++++|++|+|++|.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+.    ....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            367888899988888766666664 6889999999988 554222223334789999999999987754332    2346


Q ss_pred             CCCCcEEEccCCC--CCc-ccchhhHhhcccccccccccc-ccc----------ccCCCCc-------------------
Q 047128           77 LPFLQILDIADTN--LSG-AIPNWINNLTGMVTSCSFTRS-VQQ----------YLPLPID-------------------  123 (312)
Q Consensus        77 l~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~l~l~~n~-~~~----------~~~~~~~-------------------  123 (312)
                      +++|++|++++|.  +.. ..+.....+++|+.|++.+|. +..          .......                   
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            7789999999886  221 112223456888888888772 111          0000000                   


Q ss_pred             --cceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC-hhhhcCCCCCEEEccCCCCccc-cChhhcCCCCCc
Q 047128          124 --VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALHSLNFSYNSFTRR-IPESIGVMTSLE  199 (312)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  199 (312)
                        ................++.....+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|+
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence              000000011111222344455578899999999998764332 23557888999998887 4322 222234577888


Q ss_pred             EEEC---------CCccCCccCCcccc-CCCCCCeEecccCcccccCCCC--CCCCCCcccccc
Q 047128          200 SIDF---------STNQLSGEIPESMS-SLTFSNHLNLSNNNLTGKIPSS--TQLQSFDVSSFA  251 (312)
Q Consensus       200 ~L~l---------~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~l~  251 (312)
                      +|++         +.+.+++.....+. .+++|++|++++|.+++.....  ..+++|+.+++.
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            8887         33455543333332 3677778777777776422111  124555666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=2.9e-16  Score=146.45  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             hHHHhccccEEEcCCCcccccCChhhhc-CCCCCEEEccCCCCccccChhh-cCCCCCcEEECCCccCCccCCc-cccCC
Q 047128          143 YEDILNLVRMIDISRNNFSGKIPLEVTN-LKALHSLNFSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPE-SMSSL  219 (312)
Q Consensus       143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~~~~l  219 (312)
                      .+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+
T Consensus       427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l  505 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL  505 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred             HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence            355677899999977 666555555554 7889999999988875544444 5678899999999988654443 34457


Q ss_pred             CCCCeEecccCccc
Q 047128          220 TFSNHLNLSNNNLT  233 (312)
Q Consensus       220 ~~L~~L~l~~N~l~  233 (312)
                      ++|+.|++++|+++
T Consensus       506 ~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          506 ETMRSLWMSSCSVS  519 (594)
T ss_dssp             GGSSEEEEESSCCB
T ss_pred             CCCCEEeeeCCCCC
Confidence            88999999998874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=3.2e-14  Score=110.98  Aligned_cols=59  Identities=24%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcc
Q 047128           31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGA   93 (312)
Q Consensus        31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~   93 (312)
                      .+++++++|.++ .+|..+.   ++|+.|++++|++++..|..|..+++|++|++++|++++.
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   69 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL   69 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc
Confidence            355666666666 5665432   5566666666666655455555566666666655555533

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=1.9e-13  Score=121.07  Aligned_cols=214  Identities=10%  Similarity=-0.026  Sum_probs=121.8

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      +|+.+.+.++ ++.....+|.++ +|+.+.+.+ .++ .++...|.++.+|+.+++++|+++......|. ..+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            5777777655 554555666664 577777765 555 66666666777777777777777744344444 567777777


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ..+ ++.+...+|.++++|+.+.+..+ +...-..                      .|.. .+|+.+.+ .+.++....
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~----------------------aF~~-~~L~~i~l-p~~i~~I~~  264 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE----------------------AFRE-SGITTVKL-PNGVTNIAS  264 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT----------------------TTTT-CCCSEEEE-ETTCCEECT
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc----------------------cccc-CCccEEEe-CCCccEECh
Confidence            644 55455667777777777766543 2211111                      1111 34666666 334544455


Q ss_pred             hhhhcCCCCCEEEccCCCCc-----cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-
Q 047128          166 LEVTNLKALHSLNFSYNSFT-----RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-  239 (312)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-  239 (312)
                      .+|.++++|+.+++.+|.+.     ...+.+|.++++|+.+++.+ .++......|..+.+|+.+++..| ++...... 
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            56666666666666665543     23344556666666666663 355344455666666666666443 33222222 


Q ss_pred             CCCCCCccccccCC
Q 047128          240 TQLQSFDVSSFAGN  253 (312)
Q Consensus       240 ~~l~~l~~~~l~~n  253 (312)
                      ... +|+.+++.+|
T Consensus       343 ~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          343 NNT-GIKEVKVEGT  355 (401)
T ss_dssp             SSS-CCCEEEECCS
T ss_pred             CCC-CCCEEEEcCC
Confidence            223 5555555555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=7.5e-14  Score=109.25  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcc
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGA   93 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~   93 (312)
                      +.+++++|++. .+|..+.   ++|+.|++++|++++..|..|..+++|++|++++|++++.
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i   72 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI   72 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence            56677777766 6666542   5666677777776655566666666666666666666533

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=5.1e-13  Score=118.29  Aligned_cols=203  Identities=9%  Similarity=0.052  Sum_probs=157.8

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.+ .+|+.+.+.+ .++.....+|.++++|+.+++++|.++ .++...| ...+|+.+.+..+ ++......|.++++|
T Consensus       154 F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L  228 (401)
T 4fdw_A          154 FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQL  228 (401)
T ss_dssp             TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred             cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCC
Confidence            344 3699999986 677677788999999999999999999 8999888 4799999999855 665677789999999


Q ss_pred             cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128           81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  160 (312)
Q Consensus        81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  160 (312)
                      +.+++..+ ++.+...+|.+ .+|+.+.+. +.+...                      ....|..+++|+.+++.+|.+
T Consensus       229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I----------------------~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          229 KTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI----------------------ASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             CCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE----------------------CTTTTTTCTTCCEEEEESSCC
T ss_pred             CEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE----------------------ChhHhhCCCCCCEEEeCCccc
Confidence            99999976 55566667777 678777763 222211                      123455677899999988776


Q ss_pred             c-----ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128          161 S-----GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK  235 (312)
Q Consensus       161 ~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  235 (312)
                      .     ...+.+|.++++|+.+.+. +.++.....+|.++++|+.+.+..| ++......|..+ +|+.+++++|.+...
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence            5     4566788999999999998 4576455677888999999999665 765666788888 999999999977654


Q ss_pred             C
Q 047128          236 I  236 (312)
Q Consensus       236 ~  236 (312)
                      .
T Consensus       361 ~  361 (401)
T 4fdw_A          361 F  361 (401)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=9.9e-15  Score=128.05  Aligned_cols=88  Identities=10%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             hccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccC----Cc
Q 047128          147 LNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEI----PE  214 (312)
Q Consensus       147 ~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p~  214 (312)
                      .+.|+.|++++|.+++.    ++..+...++|++|+|++|.++..    ++..+...++|++|++++|.+++..    ..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            35699999999999753    344557789999999999999743    2455677789999999999998543    33


Q ss_pred             cccCCCCCCeEecccCcccc
Q 047128          215 SMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       215 ~~~~l~~L~~L~l~~N~l~~  234 (312)
                      .+...+.|++|++++|+|+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCH
T ss_pred             HHHhCCCCCEEeccCCCCCH
Confidence            44567899999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=1.1e-12  Score=114.09  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             cccEEEcCC-CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128          149 LVRMIDISR-NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL  227 (312)
Q Consensus       149 ~L~~L~ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  227 (312)
                      +|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            488899986 999977778899999999999999999988888889999999999999999965555665555 999999


Q ss_pred             ccCcccccCC
Q 047128          228 SNNNLTGKIP  237 (312)
Q Consensus       228 ~~N~l~~~~~  237 (312)
                      ++|+|.+.+.
T Consensus       111 ~~N~~~c~c~  120 (347)
T 2ifg_A          111 SGNPLHCSCA  120 (347)
T ss_dssp             CSSCCCCCGG
T ss_pred             eCCCccCCCc
Confidence            9999987654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=3e-12  Score=111.38  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=89.7

Q ss_pred             EEEcCCC-cccccCChhhhcCCCCCEEEccC-CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          152 MIDISRN-NFSGKIPLEVTNLKALHSLNFSY-NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       152 ~L~ls~n-~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      .++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4788888 898 5777 99999999999996 999977778899999999999999999988888999999999999999


Q ss_pred             CcccccCCCCCCCCCCccccccCCCCC
Q 047128          230 NNLTGKIPSSTQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       230 N~l~~~~~~~~~l~~l~~~~l~~n~l~  256 (312)
                      |+|++.++.......|+.+++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            999987776644444888999999654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.07  E-value=4.6e-11  Score=104.02  Aligned_cols=169  Identities=14%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             cccccCCCCCCEEECcCCCCC---------CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCc
Q 047128           22 LVSLKNCTTLESLDVGENEFV---------GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSG   92 (312)
Q Consensus        22 ~~~l~~l~~L~~L~l~~n~l~---------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   92 (312)
                      ..+...+++|+.|.+.+....         +.+...+ ..+++|+.|.+++|.-. .++. + .+++|++|++..+.+..
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence            345566788999988765431         1244444 37899999999988411 2333 3 38899999999888764


Q ss_pred             ccchhhH--hhccccccccccc--ccccccCCCCccceeeeeeeeeeecCcccchH--HHhccccEEEcCCCcccccCCh
Q 047128           93 AIPNWIN--NLTGMVTSCSFTR--SVQQYLPLPIDVGVILVEKASVVSKGEMVDYE--DILNLVRMIDISRNNFSGKIPL  166 (312)
Q Consensus        93 ~~~~~~~--~l~~L~~l~l~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~p~  166 (312)
                      .....+.  .+++|+.|++..+  .......  +               ..+...+  ..+++|++|++.+|.+.+..+.
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~---------------~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M---------------NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G---------------GGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchh--H---------------HHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            4434443  5677777665321  1100000  0               0000000  1245566666666666533332


Q ss_pred             hhh---cCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCcc
Q 047128          167 EVT---NLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGE  211 (312)
Q Consensus       167 ~~~---~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~  211 (312)
                      .+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++..
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            222   345666666666666532    222223456666666666665533

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.03  E-value=2.4e-09  Score=94.69  Aligned_cols=85  Identities=13%  Similarity=0.031  Sum_probs=54.6

Q ss_pred             hHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128          143 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS  222 (312)
Q Consensus       143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  222 (312)
                      .+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++......|..+.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3444566777777554 55455566777777777777543 55344556777777777777665 554445567777777


Q ss_pred             CeEecccC
Q 047128          223 NHLNLSNN  230 (312)
Q Consensus       223 ~~L~l~~N  230 (312)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            77777544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=7e-10  Score=96.55  Aligned_cols=180  Identities=16%  Similarity=0.198  Sum_probs=107.2

Q ss_pred             CCCCEEECcCCCCCC-CC-------ChhHHhcCCCCcEEEccCCccc---------ccCCcCCCCCCCCcEEEccCCCCC
Q 047128           29 TTLESLDVGENEFVG-NI-------PTWIGERFSRMVVLILRSNKFH---------GPLPTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        29 ~~L~~L~l~~n~l~~-~l-------p~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      ..++.|.+......+ ..       ...+. .+++|+.|.+......         +.+...+..+|+|+.|++++|.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~-~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKE-KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHH-HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhh-hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            356777777665432 21       12232 6789999999765331         113333567899999999987311


Q ss_pred             cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchH--HHhccccEEEcCC--Cccccc----
Q 047128           92 GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE--DILNLVRMIDISR--NNFSGK----  163 (312)
Q Consensus        92 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~--n~i~~~----  163 (312)
                       ..+. + .+++|+.|.+..+.+...                      ....+  ..+++|+.|+|+.  |...+.    
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~----------------------~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDS----------------------VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHH----------------------HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChH----------------------HHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence             2222 2 367788877766554311                      00111  1367788888753  221111    


Q ss_pred             -CChhh--hcCCCCCEEEccCCCCccccChhh---cCCCCCcEEECCCccCCccC----CccccCCCCCCeEecccCccc
Q 047128          164 -IPLEV--TNLKALHSLNFSYNSFTRRIPESI---GVMTSLESIDFSTNQLSGEI----PESMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       164 -~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~  233 (312)
                       +...+  ..+++|++|++++|.+....+..+   ..+++|++|+++.|.+++..    +..+..+++|+.|++++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11122  246889999998888764333333   24678899999888888643    333345688888999888776


Q ss_pred             c
Q 047128          234 G  234 (312)
Q Consensus       234 ~  234 (312)
                      .
T Consensus       321 d  321 (362)
T 2ra8_A          321 D  321 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.97  E-value=1.1e-08  Score=90.32  Aligned_cols=108  Identities=7%  Similarity=0.019  Sum_probs=72.5

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc---------------
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK---------------   65 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~---------------   65 (312)
                      |.+|++|+++.|..+ ++.....+|.++++|+.+++.++ ++ .++...|.++..|+.+.+..+-               
T Consensus        67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccc
Confidence            567888999999754 66566678899999999999765 55 6776666677777766554321               


Q ss_pred             ------ccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccccc
Q 047128           66 ------FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR  112 (312)
Q Consensus        66 ------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n  112 (312)
                            ........|..+.+|+.+.+..+. .......|..+.+|+.+.+..+
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence                  111123457777888888887653 3255567777777777766443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.80  E-value=1.2e-07  Score=83.79  Aligned_cols=107  Identities=15%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             hHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128          143 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS  222 (312)
Q Consensus       143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L  222 (312)
                      .|..+..|+.+.+..+..+ ....+|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++......|..+.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            4455666777777654433 445566677777777775 3344334455666777777777654 553444567777777


Q ss_pred             CeEecccCcccccCCCC-CCCCCCccccccCC
Q 047128          223 NHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGN  253 (312)
Q Consensus       223 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n  253 (312)
                      +.+.+..+ ++..-... ....+|+..++.++
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            77777543 33221111 33455555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=8.3e-09  Score=81.19  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=19.0

Q ss_pred             cCCCCcEEEccCC-ccccc----CCcCCCCCCCCcEEEccCCCCC
Q 047128           52 RFSRMVVLILRSN-KFHGP----LPTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        52 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      ..++|++|++++| .+...    +...+...++|++|++++|.+.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3455555555555 44421    2223344455555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=6.6e-09  Score=81.77  Aligned_cols=113  Identities=16%  Similarity=0.105  Sum_probs=87.6

Q ss_pred             CCCCCcCEEECCCC-ccccc----ccccccCCCCCCEEECcCCCCCCCC----ChhHHhcCCCCcEEEccCCccccc---
Q 047128            2 GSLTSLVWLRLGKN-KLSVD----ILVSLKNCTTLESLDVGENEFVGNI----PTWIGERFSRMVVLILRSNKFHGP---   69 (312)
Q Consensus         2 ~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~l----p~~~~~~l~~L~~L~L~~n~l~~~---   69 (312)
                      ...+.|++|+|++| .+...    +...+...++|++|++++|.+.+..    ...+. ..++|++|+|++|.++..   
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHHHH
Confidence            45789999999999 88643    4456777899999999999998432    23333 568999999999999843   


Q ss_pred             -CCcCCCCCCCCcEEEc--cCCCCCccc----chhhHhhcccccccccccccc
Q 047128           70 -LPTRLCDLPFLQILDI--ADTNLSGAI----PNWINNLTGMVTSCSFTRSVQ  115 (312)
Q Consensus        70 -~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~  115 (312)
                       +...+...+.|++|++  ++|.+....    ...+...+.|+.|++..|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             3456677889999999  889987543    345566688999999988775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.67  E-value=6e-07  Score=79.18  Aligned_cols=240  Identities=9%  Similarity=0.033  Sum_probs=131.1

Q ss_pred             CCCC-CcCEEECCCCcccccccccccCCCCCCEEECcCCC---CCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCC
Q 047128            2 GSLT-SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE---FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDL   77 (312)
Q Consensus         2 ~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~---l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   77 (312)
                      .++. .|+.+.+.++ ++..-..+|.++.+|+.+.+..|.   ++ .++...|.++.+|+.+.+..+ ++......|..+
T Consensus        60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            4443 4777777654 555566778888888888887653   55 666666666777777766554 333444557777


Q ss_pred             CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeec--CcccchHHH---------
Q 047128           78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSK--GEMVDYEDI---------  146 (312)
Q Consensus        78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------  146 (312)
                      .+|+.+.+..+. ..+....|.....|+.+.+..+ +.......+...  .+........  ......+..         
T Consensus       137 ~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~--~l~~i~ip~~~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          137 EELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGT--ALTQIHIPAKVTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC--CCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccee-eeecccceecccccccccccce-eeEecccccccc--ceeEEEECCcccccccchhhhccccceecc
Confidence            777777776442 3244445666666655554322 111111111000  0000000000  000000011         


Q ss_pred             ----------------------------hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCC
Q 047128          147 ----------------------------LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL  198 (312)
Q Consensus       147 ----------------------------~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  198 (312)
                                                  ...+..+.+.. .++.....+|.++..|+.+.+..+..+ ....+|..+++|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L  290 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL  290 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence                                        11222233322 233344557888899999998766543 555677888999


Q ss_pred             cEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccC
Q 047128          199 ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAG  252 (312)
Q Consensus       199 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~  252 (312)
                      +.+.+. +.++......|..+.+|+.+++..+ ++..-... ....+|+.+.+..
T Consensus       291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            999996 4566455567888999999999764 33322222 3345555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.59  E-value=9.5e-09  Score=85.15  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             cCCCCCCEEECcCCCCCC--CCChhHHhcCCCCcEEEccCCcccccCCcCCCCCC--CCcEEEccCCCCCcccc------
Q 047128           26 KNCTTLESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLP--FLQILDIADTNLSGAIP------   95 (312)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------   95 (312)
                      .++++|+.|+|++|++++  .+|..+. .+++|+.|+|++|++++.  ..+..+.  +|++|++++|.+.+..|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            568899999999999994  3334444 899999999999999954  2333344  89999999999986554      


Q ss_pred             -hhhHhhccccccc
Q 047128           96 -NWINNLTGMVTSC  108 (312)
Q Consensus        96 -~~~~~l~~L~~l~  108 (312)
                       ..+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             3467788887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=9.8e-08  Score=79.05  Aligned_cols=67  Identities=25%  Similarity=0.363  Sum_probs=41.8

Q ss_pred             hcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCccccCCC--CCCeEecccCcccccCC
Q 047128          169 TNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLT--FSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       169 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~~  237 (312)
                      .++++|++|+|++|++++  .+|..+..+++|+.|+|++|++++.  +.+..+.  +|++|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456777777777777764  3345555677777777777777643  2233333  67777777777766444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=5.8e-06  Score=72.36  Aligned_cols=84  Identities=14%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCe
Q 047128          145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH  224 (312)
Q Consensus       145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  224 (312)
                      .....|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++......|..+.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            34455666666554 44344556667777777777543 44234456677788888888888777555567888888888


Q ss_pred             EecccC
Q 047128          225 LNLSNN  230 (312)
Q Consensus       225 L~l~~N  230 (312)
                      +++..+
T Consensus       315 i~lp~~  320 (379)
T 4h09_A          315 VTLPTA  320 (379)
T ss_dssp             EECCTT
T ss_pred             EEcCcc
Confidence            888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.27  E-value=1.6e-05  Score=69.45  Aligned_cols=177  Identities=10%  Similarity=0.046  Sum_probs=106.3

Q ss_pred             CCCCCCcCEEECCCCcccc------------cccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccc
Q 047128            1 MGSLTSLVWLRLGKNKLSV------------DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG   68 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~------------~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~   68 (312)
                      |..+..++...+..+....            .....+.....+..+.+....-  .+....+....+|+.+.+..+ ++.
T Consensus       154 f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~  230 (379)
T 4h09_A          154 GYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTT  230 (379)
T ss_dssp             TTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCE
T ss_pred             hcccccccccccccccceeecccceecccccceecccccccccccccccccee--EEeecccccccccceeeeccc-eeE
Confidence            3456777777776543321            1223445566677776655432  333344447788999988765 343


Q ss_pred             cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhc
Q 047128           69 PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN  148 (312)
Q Consensus        69 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      .....|..+..|+.+.+..+ ++.+...+|.....                                             
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~---------------------------------------------  264 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA---------------------------------------------  264 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT---------------------------------------------
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeeh---------------------------------------------
Confidence            55667888999999988765 44344445555554                                             


Q ss_pred             cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128          149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS  228 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~  228 (312)
                       |+.+.+..+ +......+|.++.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++......|..+.+|+.+.+.
T Consensus       265 -l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          265 -LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             -CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             -hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence             444444332 33344456667777777777766666444556667777777777644 553444566677777776664


Q ss_pred             c
Q 047128          229 N  229 (312)
Q Consensus       229 ~  229 (312)
                      .
T Consensus       342 ~  342 (379)
T 4h09_A          342 K  342 (379)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=4.3e-07  Score=70.04  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=53.4

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCCCCChhHHhcC----CCCcEEEccCCc-ccccCCcCCCCCCC
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVGNIPTWIGERF----SRMVVLILRSNK-FHGPLPTRLCDLPF   79 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~   79 (312)
                      +|+.||++++.|+..--..+.++++|++|+|++|. +++.--..+. .+    ++|++|++++|. ++...-..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47788888888776555667778888888888874 5522222232 22    367888888764 65332234566778


Q ss_pred             CcEEEccCCC
Q 047128           80 LQILDIADTN   89 (312)
Q Consensus        80 L~~L~l~~n~   89 (312)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=6.5e-07  Score=69.01  Aligned_cols=83  Identities=10%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             cccEEEcCCCcccccCChhhhcCCCCCEEEccCCC-CccccChhhcCC----CCCcEEECCCcc-CCccCCccccCCCCC
Q 047128          149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVM----TSLESIDFSTNQ-LSGEIPESMSSLTFS  222 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L  222 (312)
                      .|+.||++++.+++.--..+..+++|++|+|++|. ++..--..+..+    ++|++|++++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58999999999987666778899999999999995 774443445543    479999999984 886655667889999


Q ss_pred             CeEecccCc
Q 047128          223 NHLNLSNNN  231 (312)
Q Consensus       223 ~~L~l~~N~  231 (312)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.69  E-value=7.3e-05  Score=54.74  Aligned_cols=60  Identities=13%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             EEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          176 SLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       176 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      .++.+++.++ ..+|..+  .++|++|+|++|+|+...+..|..+++|+.|+|++|++.+...
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            5666777664 2455432  2467888888888885555567778888888888888876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.49  E-value=0.00011  Score=57.61  Aligned_cols=111  Identities=13%  Similarity=0.094  Sum_probs=77.9

Q ss_pred             CCCCcCEEECCCC-ccccc----ccccccCCCCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCccccc----
Q 047128            3 SLTSLVWLRLGKN-KLSVD----ILVSLKNCTTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGP----   69 (312)
Q Consensus         3 ~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~----   69 (312)
                      +-+.|++|+|++| .|...    +.+.+..-+.|++|+|++|++.+.    +...+. .-+.|++|+|++|.|...    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHHH
Confidence            3468999999986 88632    456677788999999999999843    233333 458999999999999842    


Q ss_pred             CCcCCCCCCCCcEEEccCCC---CCcc----cchhhHhhccccccccccccc
Q 047128           70 LPTRLCDLPFLQILDIADTN---LSGA----IPNWINNLTGMVTSCSFTRSV  114 (312)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~n~---l~~~----~~~~~~~l~~L~~l~l~~n~~  114 (312)
                      +...+..-..|++|++++|.   +...    +.+.+..-+.|+.+++..+..
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23345666779999998753   3322    334555666777777765543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00046  Score=50.40  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             EEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCC
Q 047128           33 SLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        33 ~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      +++-+++.++ ..+|..+.   ++++.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555543 24444322   34555666666655433444555556666666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00024  Score=55.73  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             hccccEEEcCCC-ccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccC----C
Q 047128          147 LNLVRMIDISRN-NFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEI----P  213 (312)
Q Consensus       147 ~~~L~~L~ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p  213 (312)
                      -+.|+.|++++| .|...    +.+++..-..|++|+|++|.+...    +...+..-++|++|+|++|.|+...    -
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456889999885 77643    334555667899999999998732    3344556688999999999998553    3


Q ss_pred             ccccCCCCCCeEecccC
Q 047128          214 ESMSSLTFSNHLNLSNN  230 (312)
Q Consensus       214 ~~~~~l~~L~~L~l~~N  230 (312)
                      +.+.....|++|++++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            34556677999999865

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.33  E-value=3.6  Score=27.87  Aligned_cols=48  Identities=13%  Similarity=-0.002  Sum_probs=34.5

Q ss_pred             cccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc
Q 047128           16 KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK   65 (312)
Q Consensus        16 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~   65 (312)
                      .++.+...+|.++..|+.+.+..+ ++ .|....|.++.+|+.+.+.+..
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCSC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCCC
Confidence            455555677888888888888775 55 6777666678888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 3e-18
 Identities = 61/268 (22%), Positives = 99/268 (36%), Gaps = 5/268 (1%)

Query: 2   GSLTSLVWLRLGKNKLS--VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVL 59
                +  L L    L     I  SL N   L  L +G    +         + +++  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 60  ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP 119
            +      G +P  L  +  L  LD +   LSG +P  I++L  +V        +   +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 120 LPIDVGVILVEKASVVSKG-EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLN 178
                   L    ++              NL         N        +          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 179 FSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238
               +        +G+  +L  +D   N++ G +P+ ++ L F + LN+S NNL G+IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 239 STQLQSFDVSSFAGND-LCGAPIPKNCT 265
              LQ FDVS++A N  LCG+P+P  CT
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-16
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 27  NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86
             T LESL    N+     P  I    + +  L L  N+        L  L  L  LD+A
Sbjct: 195 KLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT--LASLTNLTDLDLA 249

Query: 87  DTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 145
           +  +S   P + +  LT +    +   ++     L               ++ E +    
Sbjct: 250 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALT-----NLELNENQLEDISPIS 304

Query: 146 ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFST 205
            L  +  + +  NN S   P+   +L  L  L F+ N  +     S+  +T++  +    
Sbjct: 305 NLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGH 360

Query: 206 NQLSGEIPESMSSLTFSNHLNLSNN 230
           NQ+S   P  +++LT    L L++ 
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 43/283 (15%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 4   LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS 63
           L  +  L+  +  +    +  ++    L  ++   N+     P    +  +++V +++ +
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPL---KNLTKLVDILMNN 97

Query: 64  NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID 123
           N+     P           L          + N  N     ++S + +          + 
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 124 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183
                          ++ D + + NL  +  +  ++        +  L  L SL  + N 
Sbjct: 158 QLSF---------GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQ 243
            +   P  I  +T+L+ +  + NQL      +++SLT    L+L+NN ++   P S  L 
Sbjct: 209 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS-GLT 263

Query: 244 SFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDEDEDEVDHW 286
                    N +         T   ++  +EN  ED   + + 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 18/237 (7%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  L +L  +    N+L+   +  LKN T L  + +  N+     P       + + +  
Sbjct: 62  VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 61  LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL 120
            +             +   L    I          + I+ L+G+ +    +   Q     
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTI----------SDISALSGLTSLQQLSFGNQVTDLK 169

Query: 121 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS 180
           P+     L       +K   +     L  +  +  + N  S   P  +  L  L  L+ +
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 227

Query: 181 YNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
            N        ++  +T+L  +D + NQ+S   P  +S LT    L L  N ++   P
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 2   GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLIL 61
            SLT L  L    NK+S   + SL N T +  L  G N+     P       +R+  L L
Sbjct: 326 SSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGL 380

Query: 62  RSN 64
              
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 154 DISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP 213
            + + N +  +     +L  + +L            + +  + +L  I+FS NQL+   P
Sbjct: 28  VLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP 83

Query: 214 ESMSSLTFSNHLNLSNNN 231
             + +LT    + ++NN 
Sbjct: 84  --LKNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 6/258 (2%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
                L L  NK++       KN   L +L +  N+     P        ++  L L  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
           +           L  L++ +   T +  ++ N +N +  +    +  +S          +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSF 184
             +   + +  +   +   + +   +  + +  N  +      +  L  L  L  S+NS 
Sbjct: 150 KKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQS 244
           +     S+     L  +  + N+L  ++P  ++   +   + L NNN++    +      
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 245 FDV--SSFAGNDLCGAPI 260
           ++   +S++G  L   P+
Sbjct: 267 YNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
           +D+     ++D+  N  +     +  NLK LH+L    N  ++  P +   +  LE +  
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 204 STNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
           S NQL  E+PE M        L +  N +T 
Sbjct: 87  SKNQLK-ELPEKMP--KTLQELRVHENEITK 114

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 37/255 (14%), Positives = 77/255 (30%), Gaps = 5/255 (1%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
            +   + L  N++S     S + C  L  L +  N                  + +  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
           +     P     L  L  L +    L    P     L  +        ++Q         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 125 GVILVEKASVVSKGEMVDYEDILNL--VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYN 182
              L       ++   V       L  +  + + +N  +   P    +L  L +L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 183 SFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL 242
           + +    E++  + +L+ +  + N    +   +     +      S++ +   +P    L
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR--L 268

Query: 243 QSFDVSSFAGNDLCG 257
              D+   A NDL G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 5e-08
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 147 LNLVRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFT----RRIPESIGVMTSLESI 201
           L++ + +DI     S     E+   L+    +       T    + I  ++ V  +L  +
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 202 DFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234
           +  +N+L       +     +    +   +L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 9e-07
 Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 14/144 (9%)

Query: 174 LHSLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGE----IPESMSSLTFSNHLNLS 228
           + SL+      +  R  E + ++   + +      L+      I  ++        LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 229 NNNLTGKIPS---------STQLQSFDVSSFAGNDLCGAPIPKNCTENVSIFEDENGDED 279
           +N L               S ++Q   + +          +        ++ E    D  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 280 EDEVDHWLYVSATLGFVVGFWCFM 303
             +    L     L          
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQ 147

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 9/79 (11%)

Query: 170 NLKALHSLNFSYNSFT----RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH- 224
               L  L  +    +      +  ++    SL  +D S N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 225 ----LNLSNNNLTGKIPSS 239
               L L +   + ++   
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 148 NLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRIPESIG-----VMTSL 198
           +++R++ ++  + S      +   +    +L  L+ S N         +          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 199 ESIDFSTNQLSGEIPESMSSLTFSN 223
           E +       S E+ + + +L    
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 5   TSLVWLRLGKNKLS----VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERF----SRM 56
           + L  L L    +S      +  +L    +L  LD+  N         + E        +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 57  VVLILRSNKFHGPLPTRLCDL----PFLQIL 83
             L+L    +   +  RL  L    P L+++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 152 MIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGE 211
                 N  S +I        +L  LN S N     +P        LE +  S N L+ E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-E 318

Query: 212 IPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS 249
           +PE   +L     L++  N L         ++   ++S
Sbjct: 319 VPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 178 NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237
            +  N+ +  I     +  SLE ++ S N+L  E+P     L     L  S N+L     
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPE 321

Query: 238 SSTQLQSFDVSSFAGNDLCGAP 259
               L+   V     N L   P
Sbjct: 322 LPQNLKQLHVE---YNPLREFP 340

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 28/247 (11%), Positives = 73/247 (29%), Gaps = 16/247 (6%)

Query: 6   SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
            ++  R  ++ +    L    +   ++ +D+  +    +    I  + S++  L L   +
Sbjct: 24  GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 66  FHGPLPTRLCDLPFLQILDIADTNLSGAIPN-----------WINNLTGMVTSCSFTRSV 114
              P+   L     L  L+++  +                   +N       +    +  
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 115 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 174
             ++   I    +   + ++             NLV +              E   L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 175 HSLNFSY-NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT 233
             L+ S            +G + +L+++        G +     +L    HL ++ ++ T
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFT 259

Query: 234 GKIPSST 240
                + 
Sbjct: 260 TIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 14/128 (10%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL 208
           L + +D++  N    +   + +   + +     +   + + E       ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVI 58

Query: 209 SGE-IPESMSSLTFSNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAPIPKN 263
               +   +S  +   +L+L    L+  I ++    + L   ++S  +G          +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 264 CTENVSIF 271
               +   
Sbjct: 119 SCSRLDEL 126

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 151 RMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP--------------------- 189
           R++ ++  + +  +   +  L  +  L+ S+N      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 190 ESIGVMTSLESIDFSTNQL-SGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQS 244
           + +  +  L+ +    N+L      + + S      LNL  N+L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 6/108 (5%)

Query: 1   MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
           +  L  +  L L  N+L             L  L+V +                R+  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALP----PALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 61  LRSNKF-HGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTS 107
           L +N+         L   P L +L++   +L          L  M+ S
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPS 118

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 21/229 (9%)

Query: 3   SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIG-ERFSRMVVLIL 61
           +L + + +  GK+  +V   V+  +   + +L          + T  G +  + ++ L L
Sbjct: 17  ALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 62  RSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP 121
           + N+     P +         L         AI    +  T  +TS   T          
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 122 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181
           + V          +   ++ +   +  L  +  +S  N        + NL  L +L    
Sbjct: 131 LQV--------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTFSNHLNLSN 229
           N  +   P  +  + +L  +    NQ+S   P  + S+L     + L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLF---IVTLTN 226

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 156 SRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR--IPESIGVMTSLESIDFSTNQLSGEIP 213
            R++ +  + +   N+  L SLN S N   R   +   +    +L+ ++ S N+L  E  
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 214 ESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSF 250
                      L L  N+L+      +   S     F
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLN 226
           EV+ + +   +N    + T  +P  +        +  S N L      ++   T    LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 227 LSNNN 231
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 1/176 (0%)

Query: 80  LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 139
             IL +++  L       +   T + T  +  R+    L +   + V+     S      
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRL-TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 140 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE 199
           +      L  + ++D+S N  +      +  L  L  L    N      P  +     LE
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 200 SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 255
            +  + N L+      ++ L   + L L  N+L               +   GN  
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 27/204 (13%)

Query: 5   TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 64
                L L +N L    L +L   T L  L++   E               ++  +  S+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLGTLDLSH 86

Query: 65  KFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV 124
                LP     LP L +LD++   L+      +  L  +         ++   P     
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----- 141

Query: 125 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSF 184
                                    +  + ++ NN +      +  L+ L +L    NS 
Sbjct: 142 -----------------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 185 TRRIPESIGVMTSLESIDFSTNQL 208
              IP+       L       N  
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 5/55 (9%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 195 MTSLESIDFSTNQLSGEIPESMSSLTFSN-----HLNLSNNNLTGKIPSSTQLQS 244
              L+++    N++  +   ++ ++          L L+ N  + +     +++ 
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=1.8e-32  Score=234.29  Aligned_cols=255  Identities=29%  Similarity=0.454  Sum_probs=216.2

Q ss_pred             CcCEEECCCCcccc--cccccccCCCCCCEEECcC-CCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            6 SLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGE-NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         6 ~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      +++.|+|+++.+++  .+|..+.++++|++|++++ |.++|.+|..+. ++++|++|++++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc-cccccchhhhccccccccccccccchhhhcc
Confidence            68899999999986  4789999999999999997 889989999988 8999999999999999888888999999999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccce---eeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV---ILVEKASVVSKGEMVDYEDILNLVRMIDISRNN  159 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  159 (312)
                      +++++|.+....|..+..++.++.+++.+|.+.+..+.......   ...........+..+..+..+. ...++++.+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999999989999999999999999999998876655443221   1111111222233334444444 4479999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128          160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS  239 (312)
Q Consensus       160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  239 (312)
                      ..+..|..+..+++++.+++++|.+++.+| .+..+++|+.|++++|++++.+|+.++.+++|++|++++|+++|.+|..
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999986655 5788899999999999999999999999999999999999999999988


Q ss_pred             CCCCCCccccccCC-CCCCCCCCCCC
Q 047128          240 TQLQSFDVSSFAGN-DLCGAPIPKNC  264 (312)
Q Consensus       240 ~~l~~l~~~~l~~n-~l~~~p~~~~c  264 (312)
                      ..+++|+.+++.+| .+||.|++ .|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccCCCCCHHHhCCCccccCCCCC-CC
Confidence            88999999999999 48998875 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6.1e-29  Score=212.25  Aligned_cols=231  Identities=22%  Similarity=0.313  Sum_probs=194.9

Q ss_pred             CCCCCCcCEEECCC-CcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCC
Q 047128            1 MGSLTSLVWLRLGK-NKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF   79 (312)
Q Consensus         1 ~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   79 (312)
                      ++++++|++|+|++ |.+++.+|..+.++++|++|++++|++.+..+..+. .+..|+.+++++|.+.+.+|..+..++.
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhcccccccccccccc-chhhhcccccccccccccCchhhccCcc
Confidence            45789999999987 889889999999999999999999999965555554 8999999999999999999999999999


Q ss_pred             CcEEEccCCCCCcccchhhHhhccc-ccccccccccccccCCCCccce-eeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128           80 LQILDIADTNLSGAIPNWINNLTGM-VTSCSFTRSVQQYLPLPIDVGV-ILVEKASVVSKGEMVDYEDILNLVRMIDISR  157 (312)
Q Consensus        80 L~~L~l~~n~l~~~~~~~~~~l~~L-~~l~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  157 (312)
                      ++++++++|.+.+.+|..+..+..+ +.+.+..|.+.+..+..+.... ...........+..+.....+++++.+++++
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999888876 7788888988876655444321 1222222333444556666788999999999


Q ss_pred             CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       158 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      |.+.+.+| .+..+++|+.|++++|++++.+|..++++++|++|++++|+++|.+|+ +..+.+|+.+++++|+..+
T Consensus       231 ~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            99996655 688899999999999999999999999999999999999999999986 5788999999999998543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-26  Score=191.44  Aligned_cols=209  Identities=18%  Similarity=0.145  Sum_probs=156.3

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEcc-CCcccccCCcCCCCCCCCcEEE
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILR-SNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      .+++|+|++|+|+...+.+|.++++|++|++++|.+. .++...+..+..++.++.. .+.++...+..|..+++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4677888888887666667777888888888888777 5565555566777777654 4556655566677778888888


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.+....+..+....+|+.+++.+|.+....+                      ..+..+++|+.|++++|.+++..
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~----------------------~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----------------------DTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccCh----------------------hHhccccchhhcccccCcccccc
Confidence            88887765666667777777777777777654322                      22334567888888888888777


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      +.+|.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..|..+++|+++++++|++.|.++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            7788888888888888888887778888888888888888888887777778888888888888888887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=187.02  Aligned_cols=205  Identities=17%  Similarity=0.154  Sum_probs=172.2

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      +...+.+.+.+++.++ .+|..+.  +++++|+|++|+++ .+|...+.++++|++|++++|+++ .++ .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence            4566778899999998 4676553  57999999999999 788766668999999999999998 444 4678999999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      |++++|+++ ..+..+..++.|+.+++.++.+.....                      ..+..+.+++.|++++|.++.
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL----------------------GALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS----------------------STTTTCTTCCEEECTTSCCCC
T ss_pred             ccccccccc-ccccccccccccccccccccccceeec----------------------cccccccccccccccccccce
Confidence            999999998 556688899999999998887765332                      222346779999999999997


Q ss_pred             cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128          163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP  237 (312)
Q Consensus       163 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  237 (312)
                      ..+..+..+++++.+++++|++++..+..+..+++|++|++++|+|+ .+|+.+..+++|+.|++++|++.|.+.
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            77778888999999999999999777788889999999999999999 788888889999999999999988653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=186.99  Aligned_cols=178  Identities=19%  Similarity=0.167  Sum_probs=157.7

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      +++++|+|++|.|++..+..|.++++|++|++++|+++ .+|..  ..+++|++|++++|+++ ..+..+..+++|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccccccccccc-cccccccccccccccc
Confidence            46999999999999777788999999999999999999 77754  37999999999999999 5677899999999999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  164 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  164 (312)
                      +++|.+....+..+..+.++..+.+.+|.+....+                      ..+..++.++.+++++|++++..
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~----------------------~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------------------GLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccccceeeccccccccccccccccccccceecc----------------------ccccccccchhcccccccccccC
Confidence            99999987888888999999999999998765432                      23344678999999999999888


Q ss_pred             ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128          165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  209 (312)
                      +..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            888999999999999999998 88888888999999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.9e-25  Score=184.71  Aligned_cols=221  Identities=16%  Similarity=0.151  Sum_probs=187.9

Q ss_pred             EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc-C
Q 047128            9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA-D   87 (312)
Q Consensus         9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~   87 (312)
                      .++.++++++ .+|..+.  +.+++|+|++|.++ .+|...+.++++|++|++++|++....+..+..+..++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            5677788887 5666553  57899999999999 8887766689999999999999998888888889999999875 5


Q ss_pred             CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128           88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  167 (312)
Q Consensus        88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~  167 (312)
                      +.++...+..|.++++|+.+++..|.+......                      .+...++|+.+++++|.+++..+..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG----------------------LFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccccccchhhcccccCCEEecCCccccccccc----------------------ccchhcccchhhhccccccccChhH
Confidence            677767788999999999999999887643322                      2234667999999999999777788


Q ss_pred             hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCc
Q 047128          168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFD  246 (312)
Q Consensus       168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~  246 (312)
                      |..+++|++|++++|.+++..+..|.++++|+++++++|++++..|..|..+++|++|++++|++++..+.. ..+.+++
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            999999999999999999777888899999999999999999888999999999999999999999877644 6778888


Q ss_pred             cccccCCCC
Q 047128          247 VSSFAGNDL  255 (312)
Q Consensus       247 ~~~l~~n~l  255 (312)
                      .+++++|++
T Consensus       229 ~L~l~~N~l  237 (284)
T d1ozna_         229 YLRLNDNPW  237 (284)
T ss_dssp             EEECCSSCE
T ss_pred             EEEecCCCC
Confidence            888888844

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7e-24  Score=179.88  Aligned_cols=246  Identities=17%  Similarity=0.187  Sum_probs=127.5

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      +++++|+|++|+|+...+.+|.++++|++|++++|.+. .++...+..++.|+.|++++|+++ .+|..+  .+.++.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhh
Confidence            45666777777666444456666667777777777666 444433336667777777777666 444432  24566666


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCC-ccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPI-DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      +.+|.+....+..+........+....+.......... ........................+++|+.|++++|.+++.
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCC
Confidence            66666665444455555555555444443221111000 00000000000000000000001234566666666666655


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC----
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----  239 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~----  239 (312)
                      .+..+..++.+++|++++|.+++..+..+..+++|++|++++|+++ .+|+.+..+++|++|++++|+|+......    
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence            5566666666666666666666555555566666666666666666 45555666666666666666665432111    


Q ss_pred             ---CCCCCCccccccCCCC
Q 047128          240 ---TQLQSFDVSSFAGNDL  255 (312)
Q Consensus       240 ---~~l~~l~~~~l~~n~l  255 (312)
                         ....+++.+++.+|++
T Consensus       266 ~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSS
T ss_pred             chhcccCCCCEEECCCCcC
Confidence               2234455555555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.3e-23  Score=178.11  Aligned_cols=228  Identities=14%  Similarity=0.109  Sum_probs=179.2

Q ss_pred             CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128            1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL   80 (312)
Q Consensus         1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   80 (312)
                      |.++++|++|++++|.+....|..|.++++|++|++++|+++ .+|...   ...++.|++++|.+....+..+.....+
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccc
Confidence            568899999999999999777889999999999999999999 888764   4789999999999986655557777888


Q ss_pred             cEEEccCCCCC--cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128           81 QILDIADTNLS--GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  158 (312)
Q Consensus        81 ~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  158 (312)
                      +.++...|...  ...+..+..+++|+.+.+..|.+..... ....................+..+..++.+++|++++|
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             cccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence            88888887653  2344577888889999988888765322 22222222211111222233455677788999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc------cCCCCCCeEecccCcc
Q 047128          159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM------SSLTFSNHLNLSNNNL  232 (312)
Q Consensus       159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~------~~l~~L~~L~l~~N~l  232 (312)
                      .+++..+..+.++++|++|+|++|+++ .+|..+..+++|++|++++|+|+......|      ..+++|+.+++++|++
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            999888889999999999999999998 778889999999999999999995433333      4578899999999998


Q ss_pred             cc
Q 047128          233 TG  234 (312)
Q Consensus       233 ~~  234 (312)
                      +.
T Consensus       285 ~~  286 (305)
T d1xkua_         285 QY  286 (305)
T ss_dssp             CG
T ss_pred             cc
Confidence            63

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=7.4e-22  Score=172.21  Aligned_cols=243  Identities=17%  Similarity=0.222  Sum_probs=147.8

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +.+|++|+++++.|+. + +.+..+++|++|++++|+++ .+|. +. ++++|++|++++|++.+. + .++.+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADI-T-PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-G-GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc-cc-CCcccccccccccccccc-c-ccccccccccc
Confidence            4567888888888763 2 35667788888888888887 6664 33 678888888888887743 2 36777788888


Q ss_pred             EccCCCCCccc---------------------------------------------------------------chhhHh
Q 047128           84 DIADTNLSGAI---------------------------------------------------------------PNWINN  100 (312)
Q Consensus        84 ~l~~n~l~~~~---------------------------------------------------------------~~~~~~  100 (312)
                      +++++.+++..                                                               ...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            77776654211                                                               122344


Q ss_pred             hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEcc
Q 047128          101 LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFS  180 (312)
Q Consensus       101 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls  180 (312)
                      ++.+..+.+..|.+....+..................  ....+..+++|+.+++++|.+++..  .+..+++|++|+++
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~  271 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLG  271 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCCCC--CcchhhcccccchhccccCccCCCC--cccccccCCEeecc
Confidence            5556666666666554433222111111111111000  1123344556666666666666332  24555666666666


Q ss_pred             CCCCcccc--------------------ChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCC
Q 047128          181 YNSFTRRI--------------------PESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST  240 (312)
Q Consensus       181 ~n~l~~~~--------------------p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~  240 (312)
                      +|++++..                    ...+..+++++.|++++|++++. +. +..+++|++|++++|++++ ++...
T Consensus       272 ~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~-l~~l~~L~~L~L~~n~l~~-l~~l~  348 (384)
T d2omza2         272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SP-VSSLTKLQRLFFANNKVSD-VSSLA  348 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-GG-GGGCTTCCEEECCSSCCCC-CGGGG
T ss_pred             CcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-cc-cccCCCCCEEECCCCCCCC-ChhHc
Confidence            66554221                    12245667888888888888843 32 6778888888888888875 34456


Q ss_pred             CCCCCccccccCCCCCCCCC
Q 047128          241 QLQSFDVSSFAGNDLCGAPI  260 (312)
Q Consensus       241 ~l~~l~~~~l~~n~l~~~p~  260 (312)
                      .+++|+.+++++|.+.+.+.
T Consensus       349 ~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         349 NLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             GCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCEEECCCCcCCCChh
Confidence            67888888888888776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=4.5e-21  Score=167.16  Aligned_cols=238  Identities=19%  Similarity=0.242  Sum_probs=146.3

Q ss_pred             CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccC-----------
Q 047128            2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-----------   70 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~-----------   70 (312)
                      ..+++|++|++++|+|++..  .++++++|++|++++|++. .++. +. .+++|+.|+++++.+++..           
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~-~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~  137 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGLTLFNNQITDIDPLKNLTNLNRL  137 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-cc-cccccccccccccccccccccccccccccc
Confidence            35677888888888877433  3777888888888888877 5553 33 6778888887777654210           


Q ss_pred             ----------------------------------------------------CcCCCCCCCCcEEEccCCCCCcccchhh
Q 047128           71 ----------------------------------------------------PTRLCDLPFLQILDIADTNLSGAIPNWI   98 (312)
Q Consensus        71 ----------------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~   98 (312)
                                                                          ...+..+++++.+++++|.+++..|  .
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~  215 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L  215 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--c
Confidence                                                                0123445677777777777775443  4


Q ss_pred             HhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC--------------
Q 047128           99 NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI--------------  164 (312)
Q Consensus        99 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~--------------  164 (312)
                      ...++|+.+++.+|.+.......................+  ...+..+++|+.++++++++++..              
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC--CCcccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            5567777777777766543211111111111111111111  112445667777777777765321              


Q ss_pred             ------ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          165 ------PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       165 ------p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                            ...+..++++++|++++|++++. +. +..+++|++|++++|+++ .++ .+..+++|++|++++|++++.+| 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~-l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-SP-VSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-GG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-cc-cccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence                  12345567777778887777743 32 667778888888888777 344 46777888888888888776544 


Q ss_pred             CCCCCCCccccccCC
Q 047128          239 STQLQSFDVSSFAGN  253 (312)
Q Consensus       239 ~~~l~~l~~~~l~~n  253 (312)
                      ...+++|+.+++++|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            456677777777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=3.6e-21  Score=151.80  Aligned_cols=171  Identities=18%  Similarity=0.259  Sum_probs=96.8

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccC-CcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF  110 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  110 (312)
                      ++++.++++++ .+|.+++   +++++|+|++|+++..+ +..|..+++|++|++++|.+....+..+..++.       
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-------   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-------
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc-------
Confidence            45566666666 6665542   45666666666665322 334556666666666666665554444443333       


Q ss_pred             ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128          111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE  190 (312)
Q Consensus       111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  190 (312)
                                                             |++|++++|+++...+.+|.++++|++|+|++|+|++..++
T Consensus        80 ---------------------------------------L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          80 ---------------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ---------------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ---------------------------------------cceeeeccccccccCHHHHhCCCcccccccCCccccccCHH
Confidence                                                   55566666666655556666666666666666666655555


Q ss_pred             hhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCC
Q 047128          191 SIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL  255 (312)
Q Consensus       191 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l  255 (312)
                      .|..+++|+++++++|.+...... ..-...++.+.+..|.+++..|.  .++.++..++..|.+
T Consensus       121 ~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEF  182 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTC
T ss_pred             HhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhC
Confidence            666666666777766666532211 11112244455566666655442  345555566666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=7.4e-21  Score=150.01  Aligned_cols=180  Identities=16%  Similarity=0.174  Sum_probs=144.6

Q ss_pred             CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128            6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI   85 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   85 (312)
                      ..++++.++++++ .+|..+.  +++++|+|++|+|++.++...+.++++|++|++++|+++...+..+..+++|++|++
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3568999999998 5676653  689999999999985677777668999999999999999888889999999999999


Q ss_pred             cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      ++|+++...+.+|.++++                                              |++|+|++|+|++..+
T Consensus        86 s~N~l~~l~~~~F~~l~~----------------------------------------------L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQ----------------------------------------------LKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CSCCCCEECSSSSTTCTT----------------------------------------------CCEEECCSSCCCEECT
T ss_pred             ccccccccCHHHHhCCCc----------------------------------------------ccccccCCccccccCH
Confidence            999999777767766655                                              8889999999998888


Q ss_pred             hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128          166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS  238 (312)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  238 (312)
                      .+|..+++|++++|++|.+........ -...++.+.+..+.++...|..   +..++.++++.|+++|..+.
T Consensus       120 ~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         120 GSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             HHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCCC
Confidence            899999999999999999874332211 1123566677778777555643   45677789999999886654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.5e-19  Score=146.31  Aligned_cols=201  Identities=14%  Similarity=0.220  Sum_probs=105.3

Q ss_pred             EECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCC
Q 047128           10 LRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTN   89 (312)
Q Consensus        10 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~   89 (312)
                      ++++.+++++..  .++++.+|+.|++.+|.++ .++ ++. .+++|++|++++|++++..  .+..+++++++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHh-cCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            345555555332  3345566667777777666 553 343 5677777777777666432  25666677777777666


Q ss_pred             CCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhh
Q 047128           90 LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT  169 (312)
Q Consensus        90 l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~  169 (312)
                      ++. ++ .+..++.|+.+.+..+.......                        +...+.++.+.++++.+....  .+.
T Consensus        97 ~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~--~~~  148 (227)
T d1h6ua2          97 LKN-VS-AIAGLQSIKTLDLTSTQITDVTP------------------------LAGLSNLQVLYLDLNQITNIS--PLA  148 (227)
T ss_dssp             CSC-CG-GGTTCTTCCEEECTTSCCCCCGG------------------------GTTCTTCCEEECCSSCCCCCG--GGG
T ss_pred             ccc-cc-cccccccccccccccccccccch------------------------hccccchhhhhchhhhhchhh--hhc
Confidence            652 22 35566666666666554432211                        111233455555555554221  244


Q ss_pred             cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCcccc
Q 047128          170 NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSS  249 (312)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~  249 (312)
                      .+++|++|++++|.+... + .++++++|++|++++|++++ ++. +..+++|++|++++|++++.. ....+++|+.++
T Consensus       149 ~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~  223 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT  223 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE
T ss_pred             cccccccccccccccccc-h-hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEE
Confidence            555556666655555422 1 14455556666666655552 332 455555666666665555432 233444444444


Q ss_pred             c
Q 047128          250 F  250 (312)
Q Consensus       250 l  250 (312)
                      +
T Consensus       224 l  224 (227)
T d1h6ua2         224 L  224 (227)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=5.3e-19  Score=141.22  Aligned_cols=180  Identities=15%  Similarity=0.250  Sum_probs=111.9

Q ss_pred             ECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCC
Q 047128           11 RLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNL   90 (312)
Q Consensus        11 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   90 (312)
                      .+..+.+++.++.  ..+..|++|++++|.++ .++. +. .+++|++|++++|++++ ++ .++.+++|++|++++|++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~-l~-~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh-Hh-hCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence            3455555543332  23557778888888877 5543 43 67888888888888874 33 356778888888888877


Q ss_pred             CcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhc
Q 047128           91 SGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN  170 (312)
Q Consensus        91 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~  170 (312)
                      +. ++ .+..+++|+.+++.+|.+...                        ..+..++.++.+++++|.+++  +..+..
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~~------------------------~~l~~l~~l~~l~~~~n~l~~--~~~~~~  154 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISDI------------------------NGLVHLPQLESLYLGNNKITD--ITVLSR  154 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC------------------------GGGGGCTTCCEEECCSSCCCC--CGGGGG
T ss_pred             cc-cc-ccccccccccccccccccccc------------------------ccccccccccccccccccccc--cccccc
Confidence            63 33 355666666655555543211                        112234556677777777663  224556


Q ss_pred             CCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          171 LKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      +++|+++++++|+++ .++. +.++++|++|++++|+++ .++ .+..+++|++|++++
T Consensus       155 l~~L~~l~l~~n~l~-~i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccc-cccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            677777777777776 3332 566777777777777776 444 366677777777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.5e-19  Score=144.93  Aligned_cols=188  Identities=15%  Similarity=0.251  Sum_probs=150.6

Q ss_pred             CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128            3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI   82 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   82 (312)
                      .+.+|++|++.+|.|+. + +.+..+++|++|++++|.++ .++. +. .+++++.+++++|.++ .+ ..+.++++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~-l~-~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~  111 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLK-NV-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCS-CC-GGGTTCTTCCE
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc-cc-cccccccccccccccc-cc-ccccccccccc
Confidence            35689999999999984 4 46889999999999999998 5554 43 8999999999999998 44 35889999999


Q ss_pred             EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      ++++++...+..  .+...+.+..+.+..+.+...                        ..+..+++|+.|++++|.+.+
T Consensus       112 l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~------------------------~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI------------------------SPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC------------------------GGGGGCTTCCEEECCSSCCCC
T ss_pred             cccccccccccc--hhccccchhhhhchhhhhchh------------------------hhhcccccccccccccccccc
Confidence            999999876443  355666777776666654421                        123456789999999999884


Q ss_pred             cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       163 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      ..  .+.++++|++|++++|+++ .++. +..+++|++|++++|++++ ++. ++.+++|+.|++++
T Consensus       166 ~~--~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 LT--PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             ch--hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            33  4789999999999999998 4554 7889999999999999994 543 78999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.4e-20  Score=148.89  Aligned_cols=216  Identities=14%  Similarity=0.065  Sum_probs=134.6

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccC-CcCCCCCCCCcEEEcc
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTRLCDLPFLQILDIA   86 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~   86 (312)
                      +.++.++..++ .+|..+.  +++++|++++|.++ .+|...+.++++|++|++++|.+...+ +..|..+++++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56677777776 4554442  46788888888887 777766557888888888888776433 3456777888888765


Q ss_pred             C-CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128           87 D-TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP  165 (312)
Q Consensus        87 ~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p  165 (312)
                      . |.+....+..|..+++|+.+++.++.+........                     ...++.+..+...++.+....+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~---------------------~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK---------------------IHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTT---------------------TCBSSCEEEEEESCTTCCEECT
T ss_pred             ccccccccccccccccccccccccchhhhcccccccc---------------------cccccccccccccccccccccc
Confidence            4 56666666777888888888887776653222111                     1123344455556666665555


Q ss_pred             hhhhcCC-CCCEEEccCCCCccccChhhcCCCCCcEE-ECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCC
Q 047128          166 LEVTNLK-ALHSLNFSYNSFTRRIPESIGVMTSLESI-DFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQL  242 (312)
Q Consensus       166 ~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l  242 (312)
                      ..+..++ .++.+++++|+++ .++......++++++ ++++|+++...+..|..+++|++|++++|+++..++.. ..+
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             cccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            5555553 6777777777777 333333344554444 45667777433445677777888888877777544322 344


Q ss_pred             CCCcccc
Q 047128          243 QSFDVSS  249 (312)
Q Consensus       243 ~~l~~~~  249 (312)
                      .+|+.++
T Consensus       225 ~~L~~l~  231 (242)
T d1xwdc1         225 KKLRARS  231 (242)
T ss_dssp             CEEESSS
T ss_pred             cccccCc
Confidence            4444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-19  Score=145.58  Aligned_cols=203  Identities=14%  Similarity=0.094  Sum_probs=146.2

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccC-CcccccCCcCCCCCCCCcEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L   83 (312)
                      +++++|++++|.|+...+..|.++++|++|++++|.+...++...+.+++.++++++.. |++....+..|..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            37999999999998666678999999999999999988567776666899999998764 67776777888999999999


Q ss_pred             EccCCCCCcccch-hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128           84 DIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  162 (312)
Q Consensus        84 ~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~  162 (312)
                      ++++|.+....+. .+..+..+.......+.+.......+.                     .....++.+++++|+++.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~---------------------~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---------------------GLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSST---------------------TSBSSCEEEECCSSCCCE
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccc---------------------cccccceeeecccccccc
Confidence            9999998743332 223334444434344433322111110                     112358889999999996


Q ss_pred             cCChhhhcCCCCCEE-EccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128          163 KIPLEVTNLKALHSL-NFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN  229 (312)
Q Consensus       163 ~~p~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  229 (312)
                      ..+..+ ...+++++ ++++|+++...+..|.++++|++|++++|+++...+..|..++.|+.+++.+
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            555444 45565555 5678889844455688999999999999999954455677777777766644

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.6e-18  Score=135.92  Aligned_cols=164  Identities=20%  Similarity=0.321  Sum_probs=105.6

Q ss_pred             EECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCC
Q 047128           10 LRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTN   89 (312)
Q Consensus        10 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~   89 (312)
                      ..++.+.+++...  ...++++++|++++|.++ .++ ++. .+++|++|++++|++++. + .++.+++|++|++++|.
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~-~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccc-cCCCcCcCccccccccCc-c-cccCCcccccccccccc
Confidence            4566667664432  245678899999999988 665 343 789999999999999854 3 38889999999999998


Q ss_pred             CCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhh
Q 047128           90 LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT  169 (312)
Q Consensus        90 l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~  169 (312)
                      +.. .+ .+..++.                                              |+.++++++.+...  ..+.
T Consensus        96 ~~~-~~-~l~~l~~----------------------------------------------L~~L~l~~~~~~~~--~~~~  125 (199)
T d2omxa2          96 IAD-IT-PLANLTN----------------------------------------------LTGLTLFNNQITDI--DPLK  125 (199)
T ss_dssp             CCC-CG-GGTTCTT----------------------------------------------CSEEECCSSCCCCC--GGGT
T ss_pred             ccc-cc-ccccccc----------------------------------------------cccccccccccccc--cccc
Confidence            763 32 2444444                                              55566655555522  2345


Q ss_pred             cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128          170 NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  234 (312)
                      .+++|+.|++++|++. .++ .+..+++|++|++++|++++ ++. +..+++|++|++++|+++.
T Consensus       126 ~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~~-l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         126 NLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             TCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Ccc-ccCCCCCCEEECCCCCCCC
Confidence            5666666666666664 333 35556666666666666653 322 5566666666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.9e-18  Score=135.67  Aligned_cols=161  Identities=23%  Similarity=0.403  Sum_probs=118.2

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      ++++++|++++|.++. + +.+..+++|++|++++|+++ .++. +. ++++|++|++++|.+. .++ .+..++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc-cc-CCcccccccccccccc-ccc-ccccccccccc
Confidence            5678888888888874 3 35777888888888888888 5554 43 7888888888888887 343 47788888888


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|......  .+..                                              +++|+.|++++|++.. 
T Consensus       112 ~l~~~~~~~~~--~~~~----------------------------------------------l~~L~~L~l~~n~l~~-  142 (199)
T d2omxa2         112 TLFNNQITDID--PLKN----------------------------------------------LTNLNRLELSSNTISD-  142 (199)
T ss_dssp             ECCSSCCCCCG--GGTT----------------------------------------------CTTCSEEECCSSCCCC-
T ss_pred             ccccccccccc--ccch----------------------------------------------hhhhHHhhhhhhhhcc-
Confidence            88888766322  1222                                              3347778888888873 


Q ss_pred             CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128          164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL  225 (312)
Q Consensus       164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  225 (312)
                      .+ .+..+++|+.|++++|+++ .++. ++++++|++|++++|+++ .++ .+..+++|++|
T Consensus       143 ~~-~l~~~~~L~~L~l~~n~l~-~l~~-l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         143 IS-ALSGLTSLQQLNFSSNQVT-DLKP-LANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             cc-ccccccccccccccccccc-CCcc-ccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            33 5778888888888888887 3433 678888888888888888 444 46777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.7e-18  Score=136.22  Aligned_cols=181  Identities=19%  Similarity=0.249  Sum_probs=143.4

Q ss_pred             EEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccccc
Q 047128           33 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR  112 (312)
Q Consensus        33 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n  112 (312)
                      ..+++.+.+++.++..   .+.+|+.|++++|.++. ++ .+..+++|++|++++|++++..  .+..+++|+.+++.+|
T Consensus        28 ~~~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHTTCSCTTSEECHH---HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             HHHhCcCccCCccCHH---HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccc
Confidence            4467777777555543   57899999999999984 33 4788999999999999998543  3678999999999999


Q ss_pred             ccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhh
Q 047128          113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESI  192 (312)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~  192 (312)
                      .+....                        .+..+++|+.|++++|.+.. + ..+..++.++.+++++|.++ .. ..+
T Consensus       101 ~i~~l~------------------------~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~-~~-~~~  152 (210)
T d1h6ta2         101 KVKDLS------------------------SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVL  152 (210)
T ss_dssp             CCCCGG------------------------GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGG
T ss_pred             cccccc------------------------cccccccccccccccccccc-c-cccccccccccccccccccc-cc-ccc
Confidence            876321                        23447789999999999873 3 36788999999999999997 33 346


Q ss_pred             cCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCcccccc
Q 047128          193 GVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFA  251 (312)
Q Consensus       193 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~  251 (312)
                      ..+++|+++++++|++++ +++ +..+++|++|++++|+++. ++....+++|+.+++.
T Consensus       153 ~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF  208 (210)
T ss_dssp             GGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEE
T ss_pred             cccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-ChhhcCCCCCCEEEcc
Confidence            788999999999999984 443 7889999999999999985 4556777888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=3.2e-16  Score=134.25  Aligned_cols=233  Identities=22%  Similarity=0.212  Sum_probs=144.2

Q ss_pred             CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128            5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD   84 (312)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   84 (312)
                      .++++|||+++.++ .+|+.   .++|++|++++|+++ .+|..    +.+|+.|++++|+++ .++. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            36889999999998 46653   578999999999999 88854    568999999999988 4443 2  24699999


Q ss_pred             ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceee-----------------eeeeeee------------
Q 047128           85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVIL-----------------VEKASVV------------  135 (312)
Q Consensus        85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-----------------~~~~~~~------------  135 (312)
                      +++|.+. .+|. +..+++|+.+++.++.+..............                 ...+...            
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccc
Confidence            9999987 4553 5678889999888776653322111000000                 0000000            


Q ss_pred             ------ec---CcccchHHHhccccEEEcCCCcccccCChhhh-----------------cCCCCCEEEccCCCCccc--
Q 047128          136 ------SK---GEMVDYEDILNLVRMIDISRNNFSGKIPLEVT-----------------NLKALHSLNFSYNSFTRR--  187 (312)
Q Consensus       136 ------~~---~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~-----------------~l~~L~~L~Ls~n~l~~~--  187 (312)
                            ..   .........++.++.+++++|.... .+....                 ....+...++..+.+.+.  
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~  261 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE  261 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence                  00   0011122345677788887776652 222110                 112233333333322210  


Q ss_pred             --------------cChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCC
Q 047128          188 --------------IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN  253 (312)
Q Consensus       188 --------------~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n  253 (312)
                                    ++.....+++|++|++++|+++ .+|+.   +++|+.|++++|+|+.. |.  .+.+|+.+++++|
T Consensus       262 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l-~~--~~~~L~~L~L~~N  334 (353)
T d1jl5a_         262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEV-PE--LPQNLKQLHVEYN  334 (353)
T ss_dssp             CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSS
T ss_pred             ccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCcc-cc--ccCCCCEEECcCC
Confidence                          0111123478999999999998 67753   57899999999999854 43  3567888899999


Q ss_pred             CCCCCCC
Q 047128          254 DLCGAPI  260 (312)
Q Consensus       254 ~l~~~p~  260 (312)
                      ++...|.
T Consensus       335 ~L~~lp~  341 (353)
T d1jl5a_         335 PLREFPD  341 (353)
T ss_dssp             CCSSCCC
T ss_pred             cCCCCCc
Confidence            8877663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=1.4e-15  Score=130.14  Aligned_cols=214  Identities=23%  Similarity=0.261  Sum_probs=131.9

Q ss_pred             CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      .++|++|++++|+|+ .+|..   ..+|+.|++++|+++ .++..    .+.|++|++++|.++ .+|. ++.+++|++|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l----p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh----ccccccccccccccc-cccc-hhhhccceee
Confidence            468999999999998 56755   457899999999998 77632    257999999999998 5664 6789999999


Q ss_pred             EccCCCCCcccc------------------hhhHhhcccccccccccccccccCCCCccc-----------------eee
Q 047128           84 DIADTNLSGAIP------------------NWINNLTGMVTSCSFTRSVQQYLPLPIDVG-----------------VIL  128 (312)
Q Consensus        84 ~l~~n~l~~~~~------------------~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-----------------~~~  128 (312)
                      +++++.+.....                  ..+..++.++.+.+..+.............                 ...
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  205 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF  205 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc
Confidence            999987653211                  123344455555555544332111110000                 000


Q ss_pred             eeeeeee--ecCcc-----------------cchHHHhccccEEEcCCCccccc----------------CChhhhcCCC
Q 047128          129 VEKASVV--SKGEM-----------------VDYEDILNLVRMIDISRNNFSGK----------------IPLEVTNLKA  173 (312)
Q Consensus       129 ~~~~~~~--~~~~~-----------------~~~~~~~~~L~~L~ls~n~i~~~----------------~p~~~~~l~~  173 (312)
                      .......  .....                 .......+.+...++..+.+.+.                ++.....+++
T Consensus       206 L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  285 (353)
T d1jl5a_         206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS  285 (353)
T ss_dssp             CCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCC
Confidence            0000000  00000                 00001122233333333322211                1111123578


Q ss_pred             CCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128          174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI  236 (312)
Q Consensus       174 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  236 (312)
                      |++|++++|+++ .+|..   +++|+.|++++|+|+ .+|..   +++|++|++++|+++..+
T Consensus       286 L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         286 LEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCC
T ss_pred             CCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCCCC
Confidence            999999999998 67753   589999999999999 67753   568999999999998644

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-16  Score=120.24  Aligned_cols=128  Identities=15%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128           24 SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG  103 (312)
Q Consensus        24 ~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  103 (312)
                      .+.++..+++|++++|+|+ .++... ..+++|+.|++++|+++ .++ .+..+++|++|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            4567778899999999998 787543 47889999999999988 443 4788888888888888887444433444443


Q ss_pred             cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC-hhhhcCCCCCEEEccCC
Q 047128          104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALHSLNFSYN  182 (312)
Q Consensus       104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n  182 (312)
                                                                    |+.|++++|+++.... ..+..+++|++|++++|
T Consensus        89 ----------------------------------------------L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          89 ----------------------------------------------LTELILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             ----------------------------------------------CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ----------------------------------------------cccceeccccccccccccccccccccchhhcCCC
Confidence                                                          6667777776663221 34566677777777777


Q ss_pred             CCccccCh----hhcCCCCCcEEE
Q 047128          183 SFTRRIPE----SIGVMTSLESID  202 (312)
Q Consensus       183 ~l~~~~p~----~~~~l~~L~~L~  202 (312)
                      .++ ..|.    .+..+|+|+.||
T Consensus       123 ~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         123 PVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccc-cccchHHHHHHHCCCcCeeC
Confidence            665 3332    345566666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.1e-15  Score=110.85  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=60.2

Q ss_pred             CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128            8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD   87 (312)
Q Consensus         8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~   87 (312)
                      |.|+|++|.++ .++ .+..+++|++|++++|+++ .+|..+. .+++|+.|++++|+++ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~-~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhh-hhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            56888888887 333 4777888888888888888 7887665 7888888888888887 344 477788888888888


Q ss_pred             CCCC
Q 047128           88 TNLS   91 (312)
Q Consensus        88 n~l~   91 (312)
                      |+++
T Consensus        75 N~i~   78 (124)
T d1dcea3          75 NRLQ   78 (124)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            8776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.1e-16  Score=118.67  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128           52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK  131 (312)
Q Consensus        52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  131 (312)
                      +...+++|+|++|+++ .++..+..+++|++|++++|.++. ++ .+..                               
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~-------------------------------   61 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPL-------------------------------   61 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCC-------------------------------
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-Cccc-------------------------------
Confidence            5667888888888888 456666778888888888888873 22 1222                               


Q ss_pred             eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC--hhhcCCCCCcEEECCCccCC
Q 047128          132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP--ESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~  209 (312)
                                     +++|++|++++|+++...+..+..+++|++|++++|+++ .++  ..+..+++|++|++++|.++
T Consensus        62 ---------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          62 ---------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ---------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ---------------CcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccchhhcCCCccc
Confidence                           344888999999998666666678899999999999987 444  35678889999999999887


Q ss_pred             ccCCc----cccCCCCCCeEec
Q 047128          210 GEIPE----SMSSLTFSNHLNL  227 (312)
Q Consensus       210 ~~~p~----~~~~l~~L~~L~l  227 (312)
                       ..|.    .+..+|+|+.||-
T Consensus       126 -~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         126 -NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             -GSTTHHHHHHHHCTTCSEETT
T ss_pred             -cccchHHHHHHHCCCcCeeCC
Confidence             4443    4667888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3e-15  Score=108.48  Aligned_cols=56  Identities=21%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCC
Q 047128           32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      |+|++++|.++ .++. +. .+++|++|++++|+++ .+|..++.+++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~-~l~~-l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCC-CCcc-cc-cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            45666666666 5553 33 5666666666666666 45555666666666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-15  Score=124.68  Aligned_cols=183  Identities=11%  Similarity=0.085  Sum_probs=125.1

Q ss_pred             CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC-CCCcc-cchhhHhhccc
Q 047128           27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT-NLSGA-IPNWINNLTGM  104 (312)
Q Consensus        27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L  104 (312)
                      ....|++||++++.+++.....+++.+++|++|+++++.++...+..++.+++|++|+++++ .++.. .......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45678888888888764444455567888888888888877666666778888888888885 45422 22234567888


Q ss_pred             ccccccccc-cccccCCCCccceeeeeeeeeeecCcccchH-HHhccccEEEcCCC--ccccc-CChhhhcCCCCCEEEc
Q 047128          105 VTSCSFTRS-VQQYLPLPIDVGVILVEKASVVSKGEMVDYE-DILNLVRMIDISRN--NFSGK-IPLEVTNLKALHSLNF  179 (312)
Q Consensus       105 ~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n--~i~~~-~p~~~~~l~~L~~L~L  179 (312)
                      +.+++.++. +..                     ....... ...+.|+.|++++.  .+++. +.....++++|++|++
T Consensus       124 ~~L~ls~c~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         124 DELNLSWCFDFTE---------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             CEEECCCCTTCCH---------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             ccccccccccccc---------------------ccchhhhcccccccchhhhccccccccccccccccccccccccccc
Confidence            888887653 211                     0011111 22357888888864  34322 2233456788999999


Q ss_pred             cCC-CCccccChhhcCCCCCcEEECCCc-cCCccCCccccCCCCCCeEecccC
Q 047128          180 SYN-SFTRRIPESIGVMTSLESIDFSTN-QLSGEIPESMSSLTFSNHLNLSNN  230 (312)
Q Consensus       180 s~n-~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N  230 (312)
                      ++| .+++.....+..+++|++|+++++ .+++.....+..+++|+.|+++++
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            886 477666677778889999999984 677666666778889999998876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=125.69  Aligned_cols=209  Identities=14%  Similarity=0.143  Sum_probs=146.5

Q ss_pred             CCCCcCEEECCCCccccc-ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCC-ccccc-CCcCCCCCCC
Q 047128            3 SLTSLVWLRLGKNKLSVD-ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN-KFHGP-LPTRLCDLPF   79 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~   79 (312)
                      ...+|++||++++.++.. +...+..+++|++|+++++.+.+..+..+. .+++|++|+++++ .++.. +......+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHh
Confidence            456899999999998744 345578899999999999998866677776 7899999999995 45521 1122356799


Q ss_pred             CcEEEccCC-CCCcc-cchhhHh-hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcC
Q 047128           80 LQILDIADT-NLSGA-IPNWINN-LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS  156 (312)
Q Consensus        80 L~~L~l~~n-~l~~~-~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls  156 (312)
                      |++|+++++ .++.. ....+.. .+.|+.+++.++...                   .....+......+++|++|+++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-------------------LQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-------------------SCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccc-------------------cccccccccccccccccccccc
Confidence            999999986 44422 2223333 367888887754211                   0011223344667899999999


Q ss_pred             CC-cccccCChhhhcCCCCCEEEccCC-CCccccChhhcCCCCCcEEECCCccCCcc-CCccccCCCCCCeEecccCccc
Q 047128          157 RN-NFSGKIPLEVTNLKALHSLNFSYN-SFTRRIPESIGVMTSLESIDFSTNQLSGE-IPESMSSLTFSNHLNLSNNNLT  233 (312)
Q Consensus       157 ~n-~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~  233 (312)
                      ++ .+++.....+.++++|++|++++| .+++.....+..+++|++|+++++ ++.. ++.....+|+|   ++..++++
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls  259 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFT  259 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSC
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCC
Confidence            86 577777778889999999999996 677666667888999999999987 4422 22222345554   45666666


Q ss_pred             cc
Q 047128          234 GK  235 (312)
Q Consensus       234 ~~  235 (312)
                      ..
T Consensus       260 ~~  261 (284)
T d2astb2         260 TI  261 (284)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=9.3e-16  Score=131.41  Aligned_cols=235  Identities=14%  Similarity=0.123  Sum_probs=150.0

Q ss_pred             CCCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCCCC----ChhH---H---hcCCCCcEEEccCCcccc
Q 047128            3 SLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGNI----PTWI---G---ERFSRMVVLILRSNKFHG   68 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~l----p~~~---~---~~l~~L~~L~L~~n~l~~   68 (312)
                      +.+.|+.|+|++|.+...    +...+...++|+.++++++... ..    |..+   +   ...++|+.|++++|.++.
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccc-ccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            356788899999988543    3345677888999999887654 22    2211   1   246789999999888774


Q ss_pred             c----CCcCCCCCCCCcEEEccCCCCCcccchhh-------------HhhcccccccccccccccccCCCCccceeeeee
Q 047128           69 P----LPTRLCDLPFLQILDIADTNLSGAIPNWI-------------NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK  131 (312)
Q Consensus        69 ~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  131 (312)
                      .    +...+...++|++|++++|.+.......+             ...+.|+.+.+..|.+....             
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~-------------  174 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------------  174 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-------------
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccc-------------
Confidence            3    22234456789999998887753211111             22334555555555443110             


Q ss_pred             eeeeecCcccchHHHhccccEEEcCCCccccc-----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEE
Q 047128          132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGK-----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESID  202 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~  202 (312)
                           ...+...+...+.|+.|++++|.++..     ....+...++|++|++++|.++..    +...+...++|++|+
T Consensus       175 -----~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         175 -----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             -----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             -----cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence                 001223345567899999999988742     233456788999999999988632    334567788999999


Q ss_pred             CCCccCCccCCccc----c--CCCCCCeEecccCccccc-----CCCC-CCCCCCccccccCCCCC
Q 047128          203 FSTNQLSGEIPESM----S--SLTFSNHLNLSNNNLTGK-----IPSS-TQLQSFDVSSFAGNDLC  256 (312)
Q Consensus       203 l~~N~l~~~~p~~~----~--~l~~L~~L~l~~N~l~~~-----~~~~-~~l~~l~~~~l~~n~l~  256 (312)
                      +++|.+++.....+    .  ..+.|++|++++|+|+..     .... ...+.++.+++++|.+.
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            99999985533332    2  246799999999988641     1111 13456777888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=4.4e-16  Score=122.59  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             CCCCEEECcCC--CCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128           29 TTLESLDVGEN--EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT  106 (312)
Q Consensus        29 ~~L~~L~l~~n--~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  106 (312)
                      ..++.+++++.  .+. .+|..+. .+++|++|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..++.   
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~---   94 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADT---   94 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHH---
T ss_pred             cccceeeeecccCchh-hhhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccc---
Confidence            34555666554  344 6666665 7888888888888887 443 4777788888888888776 33433333333   


Q ss_pred             ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128          107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR  186 (312)
Q Consensus       107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~  186 (312)
                                                                 |+.|++++|+++. + ..+..+++|++|++++|+++ 
T Consensus        95 -------------------------------------------L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~-  128 (198)
T d1m9la_          95 -------------------------------------------LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKIT-  128 (198)
T ss_dssp             -------------------------------------------CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECC-
T ss_pred             -------------------------------------------ccccccccccccc-c-ccccccccccccccccchhc-
Confidence                                                       5556666666653 2 23555666666666666665 


Q ss_pred             ccC--hhhcCCCCCcEEECCCccCCccCCcc----------ccCCCCCCeEe
Q 047128          187 RIP--ESIGVMTSLESIDFSTNQLSGEIPES----------MSSLTFSNHLN  226 (312)
Q Consensus       187 ~~p--~~~~~l~~L~~L~l~~N~l~~~~p~~----------~~~l~~L~~L~  226 (312)
                      .++  ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       129 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            332  23556666666666666655332221          34566777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.50  E-value=7.3e-16  Score=121.29  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=96.3

Q ss_pred             CcCEEECCCC--cccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128            6 SLVWLRLGKN--KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL   83 (312)
Q Consensus         6 ~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   83 (312)
                      .++.+++.+.  .+. ..+.++..+++|++|++++|+++ .++ .+. .+++|+.|++++|+++ .+|..+..+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-ccc-CCccccChhhcccccc-ccccccccccccccc
Confidence            3445555543  232 44566777888888888888887 665 344 6888888888888887 455444455678888


Q ss_pred             EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128           84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK  163 (312)
Q Consensus        84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  163 (312)
                      ++++|.++.. + .+..                                              +++|+.|++++|+++..
T Consensus        99 ~l~~N~i~~l-~-~~~~----------------------------------------------l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          99 WISYNQIASL-S-GIEK----------------------------------------------LVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             ECSEEECCCH-H-HHHH----------------------------------------------HHHSSEEEESEEECCCH
T ss_pred             cccccccccc-c-cccc----------------------------------------------cccccccccccchhccc
Confidence            8888877632 2 2333                                              33477788888877743


Q ss_pred             CC-hhhhcCCCCCEEEccCCCCccccChh----------hcCCCCCcEEECCCccCC
Q 047128          164 IP-LEVTNLKALHSLNFSYNSFTRRIPES----------IGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       164 ~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~----------~~~l~~L~~L~l~~N~l~  209 (312)
                      .. ..+..+++|+.|++++|.+....+..          +..+|+|+.||  +..++
T Consensus       131 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            22 35677888888888888776433321          45677888775  44444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=1.4e-14  Score=123.84  Aligned_cols=216  Identities=12%  Similarity=0.155  Sum_probs=150.1

Q ss_pred             CCCCCcCEEECCCCcccc---c-------ccccccCCCCCCEEECcCCCCCCCCChhH---HhcCCCCcEEEccCCcccc
Q 047128            2 GSLTSLVWLRLGKNKLSV---D-------ILVSLKNCTTLESLDVGENEFVGNIPTWI---GERFSRMVVLILRSNKFHG   68 (312)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~---~-------~~~~l~~l~~L~~L~l~~n~l~~~lp~~~---~~~l~~L~~L~L~~n~l~~   68 (312)
                      ...++|+.++++++....   .       +...+..+++|++|++++|.+...-...+   ....++|+.|++++|.+..
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccc
Confidence            467899999999876431   1       22446678999999999999884322222   2267899999999998752


Q ss_pred             cCCc-------------CCCCCCCCcEEEccCCCCCcc----cchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128           69 PLPT-------------RLCDLPFLQILDIADTNLSGA----IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK  131 (312)
Q Consensus        69 ~~~~-------------~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  131 (312)
                      ....             .....+.|+.+++++|.+...    +...+...+.++.+++..|.+...-.            
T Consensus       136 ~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~------------  203 (344)
T d2ca6a1         136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI------------  203 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH------------
T ss_pred             cccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccccc------------
Confidence            1100             113467899999999988643    23345677889999998887652100            


Q ss_pred             eeeeecCcccchHHHhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccccC----hhhc--CCCCCcEE
Q 047128          132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRIP----ESIG--VMTSLESI  201 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~--~l~~L~~L  201 (312)
                           .......+...++|+.|++++|.++..    +...+...++|++|++++|.+++...    ..+.  ..+.|++|
T Consensus       204 -----~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L  278 (344)
T d2ca6a1         204 -----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  278 (344)
T ss_dssp             -----HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             -----ccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEE
Confidence                 000122234567899999999998743    34566788999999999999975422    2233  24679999


Q ss_pred             ECCCccCCccC----Ccccc-CCCCCCeEecccCcccc
Q 047128          202 DFSTNQLSGEI----PESMS-SLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       202 ~l~~N~l~~~~----p~~~~-~l~~L~~L~l~~N~l~~  234 (312)
                      ++++|+++...    ...+. ..+.|++|++++|++..
T Consensus       279 ~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         279 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            99999998542    22332 57889999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.3e-13  Score=100.01  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             HhccccEEEcCCC-cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCe
Q 047128          146 ILNLVRMIDISRN-NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH  224 (312)
Q Consensus       146 ~~~~L~~L~ls~n-~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  224 (312)
                      .+++|++|++++| .++...+.+|.++++|+.|++++|+|+...+.+|..+++|++|+|++|+++...+..| ...+|+.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~~  107 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQE  107 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCCE
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh-ccccccc
Confidence            3456666666544 3665555566666666666666666665455566666666666666666663223333 3335666


Q ss_pred             EecccCccccc
Q 047128          225 LNLSNNNLTGK  235 (312)
Q Consensus       225 L~l~~N~l~~~  235 (312)
                      |++++|+|.+.
T Consensus       108 L~L~~Np~~C~  118 (156)
T d2ifga3         108 LVLSGNPLHCS  118 (156)
T ss_dssp             EECCSSCCCCC
T ss_pred             cccCCCcccCC
Confidence            66666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.9e-13  Score=99.47  Aligned_cols=108  Identities=19%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC-CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeee
Q 047128           54 SRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT-NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA  132 (312)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  132 (312)
                      ...+.++.+++.++ ..|..+.++++|++|++++| .++...+.+|.++++                             
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~-----------------------------   57 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE-----------------------------   57 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCC-----------------------------
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccc-----------------------------
Confidence            34556777777776 56667777778888888655 466444455544443                             


Q ss_pred             eeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128          133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS  209 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  209 (312)
                                       |+.|++++|+|+...+.+|..+++|++|+|++|+++ .+|.......+|+.|++++|.+.
T Consensus        58 -----------------L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          58 -----------------LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -----------------CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -----------------cCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence                             677888888887777777888888888888888887 44433333446888888888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.7e-14  Score=126.18  Aligned_cols=89  Identities=26%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CCCCcCEEECCCCcccc----cccccccCCCCCCEEECcCCCCCCCCChhHHhc----CCCCcEEEccCCccccc----C
Q 047128            3 SLTSLVWLRLGKNKLSV----DILVSLKNCTTLESLDVGENEFVGNIPTWIGER----FSRMVVLILRSNKFHGP----L   70 (312)
Q Consensus         3 ~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~----l~~L~~L~L~~n~l~~~----~   70 (312)
                      .++++++|+|++|.++.    .++..+..+++|++|++++|.++..--..+.+.    ..+|++|++++|+++..    +
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            35677888888888763    234556778888888888888762111122222    24688888888887632    3


Q ss_pred             CcCCCCCCCCcEEEccCCCCC
Q 047128           71 PTRLCDLPFLQILDIADTNLS   91 (312)
Q Consensus        71 ~~~~~~l~~L~~L~l~~n~l~   91 (312)
                      +..+..+++|++|++++|.+.
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCH
T ss_pred             cchhhccccccccccccccch
Confidence            445677788888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.9e-11  Score=103.81  Aligned_cols=211  Identities=15%  Similarity=0.074  Sum_probs=115.6

Q ss_pred             CcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCccccc----CCcC
Q 047128            6 SLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGP----LPTR   73 (312)
Q Consensus         6 ~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~----~~~~   73 (312)
                      ....+++..+.+...    ....+...+.++.+++++|.+...    ...........++.+++++|.+...    ....
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence            345566666655421    112344566777777777765421    1112222356777777777776522    1122


Q ss_pred             CCCCCCCcEEEccCCCCCcccchhhH-----hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhc
Q 047128           74 LCDLPFLQILDIADTNLSGAIPNWIN-----NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN  148 (312)
Q Consensus        74 ~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      +...+.++.+++++|.+.......+.     ....|+.+.+..+.+.....                  ..+.......+
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~------------------~~l~~~~~~~~  340 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC------------------SHFSSVLAQNR  340 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH------------------HHHHHHHHHCS
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhh------------------hhccccccccc
Confidence            34456777777777776533222221     12344455554444331100                  00112233445


Q ss_pred             cccEEEcCCCccccc----CChhhh-cCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccCCccc---
Q 047128          149 LVRMIDISRNNFSGK----IPLEVT-NLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEIPESM---  216 (312)
Q Consensus       149 ~L~~L~ls~n~i~~~----~p~~~~-~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---  216 (312)
                      +|++|++++|++++.    +++.+. ..+.|++|+|++|.++..    ++..+...++|++|++++|++++.....+   
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            688888888887643    222332 346688888888888632    33445566888888888888875433222   


Q ss_pred             -c-CCCCCCeEecccCcccc
Q 047128          217 -S-SLTFSNHLNLSNNNLTG  234 (312)
Q Consensus       217 -~-~l~~L~~L~l~~N~l~~  234 (312)
                       . ....|+.+++.+|.+..
T Consensus       421 l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HTSTTCCCCEEECTTCCCCH
T ss_pred             HHhCCCccCEEECCCCCCCH
Confidence             2 23368888888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-09  Score=81.03  Aligned_cols=81  Identities=17%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             HhccccEEEcCCCcccccC--ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc-------cc
Q 047128          146 ILNLVRMIDISRNNFSGKI--PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE-------SM  216 (312)
Q Consensus       146 ~~~~L~~L~ls~n~i~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-------~~  216 (312)
                      .++.|++|++++|+|+...  +..+..+++|+.|++++|.++...+........|+.|++++|.+......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3555777777777776432  23456677777777777777632222223345677777777777644332       23


Q ss_pred             cCCCCCCeEe
Q 047128          217 SSLTFSNHLN  226 (312)
Q Consensus       217 ~~l~~L~~L~  226 (312)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4567777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=9.9e-09  Score=77.05  Aligned_cols=87  Identities=15%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             ccccccCCCCCCEEECcCCCCCCCCCh--hHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc---
Q 047128           21 ILVSLKNCTTLESLDVGENEFVGNIPT--WIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP---   95 (312)
Q Consensus        21 ~~~~l~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---   95 (312)
                      ++..+.++++|++|++++|+++ .++.  ..++.+++|+.|++++|+++...+-.+....+|+.|++++|++.....   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3344467889999999999998 5543  334478999999999999984333233345578999999998875433   


Q ss_pred             ----hhhHhhccccccc
Q 047128           96 ----NWINNLTGMVTSC  108 (312)
Q Consensus        96 ----~~~~~l~~L~~l~  108 (312)
                          ..+..+|+|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                2355678887765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=3e-06  Score=63.39  Aligned_cols=109  Identities=12%  Similarity=0.058  Sum_probs=77.3

Q ss_pred             CCCCcCEEECCCC-ccccc----ccccccCCCCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCccccc----
Q 047128            3 SLTSLVWLRLGKN-KLSVD----ILVSLKNCTTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGP----   69 (312)
Q Consensus         3 ~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~----   69 (312)
                      +.++|++|+|+++ .++..    +...+...++|++|++++|.+...    +...+. ..+.|++|++++|.++..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~-~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh-hcccccceeeehhhcchHHHHH
Confidence            4689999999975 57532    345677889999999999998732    222333 578999999999998842    


Q ss_pred             CCcCCCCCCCCcEEEccCCCCCcc-------cchhhHhhccccccccccc
Q 047128           70 LPTRLCDLPFLQILDIADTNLSGA-------IPNWINNLTGMVTSCSFTR  112 (312)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~l~l~~n  112 (312)
                      +...+...+.|++|++++|.....       +...+..-+.|+.+++..+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            233567778999999999876532       2334455566776665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=4e-06  Score=62.68  Aligned_cols=12  Identities=17%  Similarity=0.567  Sum_probs=5.7

Q ss_pred             ccEEEcCCCccc
Q 047128          150 VRMIDISRNNFS  161 (312)
Q Consensus       150 L~~L~ls~n~i~  161 (312)
                      |+.|++++|.++
T Consensus        74 L~~L~L~~n~i~   85 (167)
T d1pgva_          74 LRVLNVESNFLT   85 (167)
T ss_dssp             CCEEECCSSBCC
T ss_pred             ccceeeehhhcc
Confidence            444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=3.7e-05  Score=57.07  Aligned_cols=112  Identities=17%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             CCCCCcCEEECCC-Cccccc----ccccccCCCCCCEEECcCCCCCCCCChhHH---hcCCCCcEEEccCCccccc----
Q 047128            2 GSLTSLVWLRLGK-NKLSVD----ILVSLKNCTTLESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHGP----   69 (312)
Q Consensus         2 ~~l~~L~~L~L~~-n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~---~~l~~L~~L~L~~n~l~~~----   69 (312)
                      .+.+.|++|++++ +.++..    +..++...++|++|++++|.+....-..+.   +..+.++.+++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3568999999998 567532    345667889999999999998743222222   2568999999999998632    


Q ss_pred             CCcCCCCCCCCcEEEcc--CCCCCc----ccchhhHhhcccccccccccc
Q 047128           70 LPTRLCDLPFLQILDIA--DTNLSG----AIPNWINNLTGMVTSCSFTRS  113 (312)
Q Consensus        70 ~~~~~~~l~~L~~L~l~--~n~l~~----~~~~~~~~l~~L~~l~l~~n~  113 (312)
                      +...+...++|+.++++  +|.+..    .+...+...+.|+.+++..+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            23456777889876664  566653    234456677888888776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=4.9e-05  Score=56.37  Aligned_cols=12  Identities=25%  Similarity=0.434  Sum_probs=5.8

Q ss_pred             CCCCCCEEECcC
Q 047128           27 NCTTLESLDVGE   38 (312)
Q Consensus        27 ~l~~L~~L~l~~   38 (312)
                      +.+.|++|++++
T Consensus        15 ~~~~L~~L~L~~   26 (166)
T d1io0a_          15 NDPDLEEVNLNN   26 (166)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cCCCCcEEEcCC
Confidence            344555555544