Citrus Sinensis ID: 047136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASSSLALGQSHQQTLIYSY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MTNSKRLIQLARKWQKMAAMKRKrisfprraaaqnssvankgHFVVyttdnmrftvPLEYLSRNVFIELLRMSeeefglpsngpitlpcdstFLNYVMTLVKGCIPEDLGKALitslptcyfsassslalgqshqqTLIYSY
Flexible Loop (DISEMBL)
MTNSKRLIQLARKWQKMAAMKRKRisfprraaaqnssvankghfVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASsslalgqshqqtliysy
Low Complexity Region (SEG)
MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASSSLALGQSHQQTLIYSY
Disordered region (IsUnstruct)
*************************************VANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASS****************
Disordered Region (DISOPRED)
***SKRLIQLARKWQ***************************HFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLV***********LITSLPTC***************QTLIYSY
Disordered Region (DISEMBL)
MTNSKRLIQLARKWQKMAAMKRKRISFP*********VANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASSSLA*************
Disordered Region (DISPRO)
*TNSKRLIQLARKWQKMAAMKR***************VANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASSS*****SHQQTLIYSY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTCYFSASSSLALGQSHQQTLIYSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.514	0.784	0.434	3e-07
P33083	90	Auxin-induced protein 6B	no	no	0.556	0.877	0.320	4e-07
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.542	0.836	0.35	3e-06
P33080	92	Auxin-induced protein X10	no	no	0.471	0.728	0.391	7e-06
P33082	82	Auxin-induced protein X15	no	no	0.443	0.768	0.384	4e-05
P33081	82	Auxin-induced protein 15A	no	no	0.443	0.768	0.369	0.0001

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 23 KRISFPRRAAAQNSSVANKGHFVVYTTDNMR-FTVPLEYLSRNVFIELLRMSEEEFGLPS 81
          +R SF    AA       KG+  VY  D MR FT+P+ YL+   F ELL  +EEEFG   
Sbjct: 10 RRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDH 69

Query: 82 N-GPITLPC-DSTFLN 95
            G +T+PC +  FLN
Sbjct: 70 PMGGLTIPCKEEEFLN 85

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 23  KRISFPRRAAAQNSSVANKGHFVVYTTDNMR-FTVPLEYLSRNVFIELLRMSEEEFGLPS 81
           ++ SF    A+  +    KG+  VY  + MR F +P+ YL++  F +LL  +EEEFG   
Sbjct: 9   RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHH 68

Query: 82  -NGPITLPCDSTFLNYVMTLV 101
            NG +T+PC      ++ + +
Sbjct: 69  PNGGLTIPCSEDVFQHITSFL 89

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 22 RKRISFPRRAAAQNSSVANKGHFVVYTTDNM-RFTVPLEYLSRNVFIELLRMSEEEFGLP 80
          RK +S  R  A+     A KG+  VY  +NM RF +P+ +L++ +F +LL  +EEEFG  
Sbjct: 9  RKTLS-ARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYD 67

Query: 81 SN-GPITLPCDSTFLNYVMT 99
             G +T+PC      ++ +
Sbjct: 68 HPMGGLTIPCSEDLFQHITS 87

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 23 KRISFPRRAAAQNSSVANKGHFVVYTTDNMR-FTVPLEYLSRNVFIELLRMSEEEFGLPS 81
          ++ S     A+  S    KG+ VVY  D MR F +P+ YL++  F +LL  +EEEFG   
Sbjct: 9  RKTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDH 68

Query: 82 N-GPITLPC 89
            G +T+PC
Sbjct: 69 PMGGLTIPC 77

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 27 FPRRAAAQNSSVANKGHFVVYTTDNM-RFTVPLEYLSRNVFIELLRMSEEEFGLPSN-GP 84
           P    A N+  A KG+  VY  + M RF +P+ Y+++  F +LL  +EEEFG     G 
Sbjct: 5  LPGIRKASNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGG 64

Query: 85 ITLPC 89
          +T+PC
Sbjct: 65 LTIPC 69

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 27 FPRRAAAQNSSVANKGHFVVYTTDNM-RFTVPLEYLSRNVFIELLRMSEEEFGLPSN-GP 84
           P    A  ++ A KG+  VY  + + RF +P+ YL++  F +LL  +EEEFG     G 
Sbjct: 5  LPGIRKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGG 64

Query: 85 ITLPC 89
          +T+PC
Sbjct: 65 LTIPC 69

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
356540954	149	PREDICTED: uncharacterized protein LOC10	1.0	0.953	0.590	6e-43
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.978	0.939	0.537	3e-39
297744512	141	unnamed protein product [Vitis vinifera]	0.992	1.0	0.570	4e-39
225428233	147	PREDICTED: uncharacterized protein LOC10	1.0	0.965	0.537	1e-38
297744514	142	unnamed protein product [Vitis vinifera]	0.978	0.978	0.558	5e-38
297744507	254	unnamed protein product [Vitis vinifera]	0.964	0.539	0.510	1e-35
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.978	0.952	0.536	5e-35
297744481	290	unnamed protein product [Vitis vinifera]	0.894	0.437	0.568	6e-35
225428209	178	PREDICTED: uncharacterized protein LOC10	0.957	0.764	0.527	9e-35
225428229	148	PREDICTED: uncharacterized protein LOC10	0.978	0.939	0.516	1e-34

>gi|356540954|ref|XP_003538949.1| PREDICTED: uncharacterized protein LOC100802572 [Glycine max]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 111/149 (74%), Gaps = 7/149 (4%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQN-----SSVANKGHFVVYTTDNMRFT 55
           M ++ RLI++ARKWQKMA   RKRIS+P R    N     SS ANKGHFVVY+ D+ RF 
Sbjct: 1   MISANRLIEMARKWQKMAVGNRKRISYPPRNHNNNVHMHYSSTANKGHFVVYSVDHKRFE 60

Query: 56  VPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALIT 115
           VPL+YLS NVF ELL  SEEEFGLPSNGPITLPCDS FL+YV++L++  +PE++ KALIT
Sbjct: 61  VPLKYLSTNVFRELLNWSEEEFGLPSNGPITLPCDSVFLDYVISLIRERVPEEVEKALIT 120

Query: 116 SLPTCYFSASSSLALG--QSHQQTLIYSY 142
           S+  C+  ASSS + G  QS++  +IY +
Sbjct: 121 SMVACHHEASSSSSRGLRQSNEPMIIYGF 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 107/145 (73%), Gaps = 6/145 (4%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRA------AAQNSSVANKGHFVVYTTDNMRF 54
           M ++K+LI++ARKWQKMAA++RKRIS PR +      +   SS A KGHFVVY+ D  RF
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 55  TVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALI 114
            VPL YL+ N+F EL +MSEEEFGLPSNGPITLPCD+ F+ Y+++LV+  I +DL KAL+
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 120

Query: 115 TSLPTCYFSASSSLALGQSHQQTLI 139
           T++ T    ++S++   Q +QQ L+
Sbjct: 121 TAIATGRCLSTSNICQEQGNQQLLV 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744512|emb|CBI37774.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEY 60
           M N K+LI++ARKWQK+AAMKRKRI+ PR     ++ VANKGHFVVYT D  RF +PL +
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRITLPRTDEILDADVANKGHFVVYTADQRRFMIPLVF 60

Query: 61  LSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTC 120
           LS N+F EL RMSEEEFGLPSNGPITLP DS F+ Y++ L++  + +D+ KAL+ S+ T 
Sbjct: 61  LSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGMAKDIEKALLISIATS 120

Query: 121 YFSASSSLALGQSHQQTLIYSY 142
             S SSS   GQ   Q L+  Y
Sbjct: 121 RCSLSSSHQ-GQMGHQLLLCGY 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 106/147 (72%), Gaps = 5/147 (3%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPR-----RAAAQNSSVANKGHFVVYTTDNMRFT 55
           M ++K+LI++AR WQKMAA++RKRI  PR      A   ++S A KGHFVVY++D  RF 
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTAEKGHFVVYSSDESRFV 60

Query: 56  VPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALIT 115
           VPL YL+ N+F EL +MSEEEFGLPSNGPITLPCD+ F+ Y+++LV+  I +DL KAL+T
Sbjct: 61  VPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALLT 120

Query: 116 SLPTCYFSASSSLALGQSHQQTLIYSY 142
           ++ T    ++S+L   Q  QQ LI  Y
Sbjct: 121 AIATGCCLSTSNLCQEQGSQQLLICGY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 104/145 (71%), Gaps = 6/145 (4%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSS-VANKGHFVVYTTDNMRFTVPLE 59
           M N K+LI++ARKWQKMAAM+RKRIS PR     ++  +A+KGHFVVYTTD  RF +PL 
Sbjct: 1   MINPKKLIKMARKWQKMAAMRRKRISLPRTDEVLDADRLADKGHFVVYTTDKRRFMIPLA 60

Query: 60  YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPT 119
           YLS N+  EL +M+EEEFGL SNGPITLPCDS F+ Y++ L++  + +D+ KAL+ SL T
Sbjct: 61  YLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLAT 120

Query: 120 CYFSASSSLALGQSH--QQTLIYSY 142
              S  S L+  Q H  QQ L+ SY
Sbjct: 121 ---SCCSLLSSHQEHISQQLLVCSY 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744507|emb|CBI37769.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 98/137 (71%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEY 60
           M ++K+LI++AR WQKMAA++RKRI  PR +   ++ VA+KGHFVVYT+D +RF VPL Y
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADVADKGHFVVYTSDRIRFVVPLVY 60

Query: 61  LSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTC 120
           L   +F EL +M+EEEFGLP NGPI LPCD+ F+ Y ++L++  + +DL KAL+ S+   
Sbjct: 61  LDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKALLMSIAAD 120

Query: 121 YFSASSSLALGQSHQQT 137
             S+SS     QS+  T
Sbjct: 121 RCSSSSYFHQDQSNPHT 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 102/149 (68%), Gaps = 10/149 (6%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQN-----SSVANKGHFVVYTTDNMRFT 55
           M + K+LI++ARKWQ+ AA+ RKRIS PR  A  +     +SVA+KGHFVVY TD  RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALIT 115
           +PL YLS N+F EL +MSEEEFGL S+GPITLPCDS F+ Y++ L++  + +D+ KALI 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLPTCYFSASSSLALGQSH--QQTLIYSY 142
           SL T   S SSS    Q H  Q  L+  Y
Sbjct: 121 SLVTSRCSQSSS---HQEHISQHLLVCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 5/132 (3%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQN-----SSVANKGHFVVYTTDNMRFT 55
           M + K+LI++ARKWQ+ AA+ RKRIS PR  A  +     +SVA+KGHFVVY TD  RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALIT 115
           +PL YLS N+F EL +MSEEEFGL S+GPITLPCDS F+ Y++ L++  + +D+ KALI 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLPTCYFSASSS 127
           SL T   S SSS
Sbjct: 121 SLVTSRCSQSSS 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428209|ref|XP_002279108.1| PREDICTED: uncharacterized protein LOC100264057 [Vitis vinifera]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 103/146 (70%), Gaps = 10/146 (6%)

Query: 4   SKRLIQLARKWQKMAAMKRKRISFPR-----RAAAQNSSVANKGHFVVYTTDNMRFTVPL 58
           +K+L+++ARKWQ++AA+ RK IS PR      A   ++SVA+KGHFVVYTTD  RF +PL
Sbjct: 36  AKKLVKMARKWQRIAALGRKTISSPRTKVDVDADNCSTSVADKGHFVVYTTDKRRFMIPL 95

Query: 59  EYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLP 118
            YLS N+  EL +M+EEEFGL SNGPITLPCDS F+ Y++ L++  + +D+ KAL+ SL 
Sbjct: 96  AYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLA 155

Query: 119 TCYFSASSSLALGQSH--QQTLIYSY 142
           T   S  S L+  Q H  QQ L+ SY
Sbjct: 156 T---SCCSLLSSHQEHISQQLLVCSY 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428229|ref|XP_002279305.1| PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 12/151 (7%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAA------AQNSSVANKGHFVVYTTDNMRF 54
           M N K+LI++AR+WQK+AA++RKRIS PR +          SSVA+KGHFVVYT D  RF
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTSQYLGAGHCSTSSVADKGHFVVYTADQRRF 60

Query: 55  TVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALI 114
            +PL YL+  +F EL  MSEEEFGLPS+GPITLPCDS F+ Y++ LV+  + ++L KAL+
Sbjct: 61  MIPLVYLNSEIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGVAKNLEKALL 120

Query: 115 TSLPTCYFSASSSLALGQSHQ---QTLIYSY 142
           TS+     + SSS    Q  Q   + L+ SY
Sbjct: 121 TSVA---HTQSSSAIFSQQEQMNSRLLVCSY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.985	0.992	0.531	3.2e-33
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.978	0.985	0.507	1.1e-30
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.950	0.957	0.510	4.9e-30
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.950	1.0	0.5	1.6e-29
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.978	0.972	0.489	2.7e-29
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.985	0.992	0.468	4.4e-29
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.978	0.978	0.478	1.9e-28
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.985	0.945	0.439	1.2e-26
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.640	0.892	0.565	6.8e-24
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.697	0.804	0.39	7e-18

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/141 (53%), Positives = 102/141 (72%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEY 60
             M N+K+LI++A+KWQ+ AA+ RKRISF R ++A +S+ A KG FVVYTTD+ RF  PL Y
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSY 60

Query:    61 LSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTC 120
             LS +VF ELL++SEEEFGLP+ GPIT P DS FL Y++ LV+  +  D  KAL+ S+ + 
Sbjct:    61 LSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLMSISSA 120

Query:   121 YFSASSSLALGQ-SHQQTLIY 140
               S+  SL L + S QQ L++
Sbjct:   121 RCSSQCSLKLQERSTQQLLVF 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 72/142 (50%), Positives = 98/142 (69%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVA-NKGHFVVYTTDNMRFTVPLE 59
             M N+K+L+++A+KWQ+ AA++RKRISF R     +SS A  KG FVVYT+D +RF  P+ 
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHRSTDTTSSSTAAEKGCFVVYTSDRIRFAFPIS 60

Query:    60 YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPT 119
             YLS +V  ELL++SEEEFG+P+ GPITLP DS FL Y++ LV+  +  D  KALITS+ +
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALITSISS 120

Query:   120 CYFSASSSLALGQSHQQT-LIY 140
                S   S  L Q H  T L++
Sbjct:   121 TRCSLPCSFQL-QEHSSTRLVF 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 74/145 (51%), Positives = 98/145 (67%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVA-NKGHFVVYTTDNMRFTVPLE 59
             M N+K+L++LA+KWQ+ AA+KRKRISF R +   +S  A  KG FVVYT D +RF+ PL 
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSSITTSSQTAVEKGCFVVYTADKIRFSFPLS 61

Query:    60 YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPT 119
             YLS  +  ELL++SEEEFGLP+ GPITLP DS FL Y++ L++  + ED  KAL+ S+  
Sbjct:    62 YLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLLSIS- 120

Query:   120 CYFSASSSLALGQSH----QQTLIY 140
                SA SS    Q H    QQ L++
Sbjct:   121 ---SARSSFQ-PQQHCSATQQLLVF 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 70/140 (50%), Positives = 92/140 (65%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNMRFTVPLEY 60
             M N+K+LI++ RKWQ+ AA+ RKRISF R +    S+   KG FVVYT DN RF  P+ Y
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQRPST--RSTTVEKGCFVVYTADNTRFAFPISY 58

Query:    61 LSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPTC 120
             LS +VF E+L +SEEEFGLP+ GPITLP DS FL Y++ L+K  +  D  KAL+ S+ + 
Sbjct:    59 LSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLMSISSA 118

Query:   121 YFSASSSLALGQSHQQTLIY 140
               S        QS QQ L++
Sbjct:   119 RCSLQKQ---EQSTQQLLVF 135

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 69/141 (48%), Positives = 94/141 (66%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPR-RAAAQNSSVANKGHFVVYTTDNMRFTVPLE 59
             M N+K+L+++A+KWQ+ AA+ RKRISF R      +SS   KG FVVYT D +RF  P+ 
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTSSSSTVEKGCFVVYTADKIRFAFPIS 61

Query:    60 YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPT 119
             YLS ++  ELL++SEEEFGLP+ GPITLP DS FL Y++ L++  +  D  KAL+ S+ +
Sbjct:    62 YLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEKALLMSISS 121

Query:   120 CYFSASSSLALG-QSHQQTLI 139
                S   SL    QS QQ L+
Sbjct:   122 AKCSLQCSLLQQEQSTQQLLV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 66/141 (46%), Positives = 94/141 (66%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAA-AQNSSVANKGHFVVYTTDNMRFTVPLE 59
             M N+K+L+++A+KWQ+ AA+ RKRISF R +    +SS   KG FVVYT D +RF  P+ 
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTSSSSTVEKGCFVVYTADKIRFAFPIS 60

Query:    60 YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLPT 119
             YLS +V  ELL++SEE+FGLP+ GPITLP DS FL Y++ L++  + ED  KAL+ S+ +
Sbjct:    61 YLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEKALLLSISS 120

Query:   120 CYFSASSSLALGQSHQQTLIY 140
                S         + QQ L++
Sbjct:   121 ARCSFQPQEQQCSTTQQLLVF 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 68/142 (47%), Positives = 92/142 (64%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSS--VANKGHFVVYTTDNMRFTVPL 58
             M N+K L++LA+ WQ+ AA+KRKRISF R +    SS     KG FVVYT D +RF+ PL
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSSITTTSSQTTVEKGCFVVYTADKIRFSFPL 61

Query:    59 EYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKALITSLP 118
              YLS  +  ELL++SEEEFGLP+ GPITLP DS FL Y++ L++  + ED  KAL+ S+ 
Sbjct:    62 SYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLWSIS 121

Query:   119 TCYFSASSSLALGQSHQQTLIY 140
             +   S         + QQ L++
Sbjct:   122 SARCSLQPQQHCSAT-QQLLVF 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/148 (43%), Positives = 91/148 (61%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAA--------QNSSVANKGHFVVYTTDNM 52
             M N+K+L+++A+KWQ+ AA+KRKRISF R             +S+   KG FVVYT D +
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    53 RFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGCIPEDLGKA 112
             RF  PL YL+ +VF ELL++SEEEFGL + GPITLP DS FL Y++  ++  +  D  KA
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKA 120

Query:   113 LITSLPTCYFSASSSLALGQSHQQTLIY 140
             L+ S+ +   S           QQ L++
Sbjct:   121 LLMSISSARCSMQPQEQQSGYTQQLLVF 148

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/92 (56%), Positives = 70/92 (76%)

Query:     1 MTNSKRLIQLARKWQKMAAMKRKRISFPR-RAAAQNSSVANKGHFVVYTTDNMRFTVPLE 59
             M N+K+L+++A+KWQ+ AA++RKRISF R  +   +SS   KG FVVYT D +RF  P+ 
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPIS 60

Query:    60 YLSRNVFIELLRMSEEEFGLPSNGPITLPCDS 91
             YLS +V  ELL++SEEEFG+P+ GPITLP DS
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDS 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
 Identities = 39/100 (39%), Positives = 63/100 (63%)

Query:    41 KGHFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTL 100
             KGHF VYT +  RF +PL+YL+  +   LL+M+E+EFG   +GP+ +PCD + +++++ L
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIML 82

Query:   101 VKGCIPEDLGKALITSLP-TCYFSASSSLALGQSHQQTLI 139
             V+  +  D      +S   TC  ++ SSL  GQS  Q+L+
Sbjct:    83 VRRSMSHDYDDVEKSSTSSTCKGASISSLFRGQSQLQSLV 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-28
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-11
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-08
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-06

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  100 bits (251), Expect = 1e-28
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 1   MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNM-RFTVPLE 59
           M +  +    A+KW   AA  R R S  +     +S+   KGHF VY  +   RF VP+ 
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSSKS----SSADVPKGHFAVYVGEETRRFVVPIS 56

Query: 60  YLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVK 102
           YL+  +F ELL  +EEEFG   +G +T+PCD     +++ +++
Sbjct: 57  YLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 41  KGHFVVYTTDN-MRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMT 99
           KGHF VY  +N  R+ VP+ +L+   F  LL+ +EEEFG   +  +T+PC+      + +
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 100 LVK 102
           +++
Sbjct: 102 MIR 104

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 5   KRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTDNM---RFTVPLEYL 61
           + ++  A++  K  +M+ K  S    ++   S +  KGH  VY  + M   RF VP+ YL
Sbjct: 5   RSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYL 64

Query: 62  SRNVFIELLRMSEEEFGL-PSNGPITLPCDSTFLNYVMT 99
           +  +F E L  +EEE G   S G +T+PC      +++T
Sbjct: 65  NHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 20  MKRKRISFPRRAAAQNSSVANKGHFVVYTTDNM-----RFTVPLEYLSRNVFIELLRMSE 74
           +K   ++   R ++ +S    KGH  VY  + +     RF VP+ +L+   F E L  +E
Sbjct: 16  LKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE 75

Query: 75  EEFGL--PSNGPITLPC-DSTFLNYVMT 99
           EEFG   P  G +T+PC +  FL+ + +
Sbjct: 76  EEFGFNHPMGG-LTIPCREEVFLDLIAS 102

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	83.76
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	82.16

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.9e-38  Score=229.53  Aligned_cols=99  Identities=38%  Similarity=0.704  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHhhhhhcccCcccccccccccCCCCCCCCeEEEEecc-ccEEeEeccCCCcHHHHHHHHhhhHhcCC
Q 047136            1 MTNSKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTD-NMRFTVPLEYLSRNVFIELLRMSEEEFGL   79 (142)
Q Consensus         1 m~~~~KL~~~~kKWq~~a~~~r~r~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~aeeEfG~   79 (142)
                      ||+.+|....++||++.++..+++.+.....   +..++|+||||||||+ ++||+||++|||||+|++||++|+|||||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~---~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~   77 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS---SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGF   77 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc---ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCc
Confidence            9999999999999999877666544433222   1368999999999998 89999999999999999999999999999


Q ss_pred             CCCCCeeecCchHHHHHHHHHHh
Q 047136           80 PSNGPITLPCDSTFLNYVMTLVK  102 (142)
Q Consensus        80 ~~~G~L~iPC~~~~Fe~vl~~i~  102 (142)
                      +++|+|+||||+++|++++|+|+
T Consensus        78 ~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   78 DQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3e-36  Score=221.71  Aligned_cols=91  Identities=25%  Similarity=0.544  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHhhhhhcccCcccccccccccCCCCCCCCeEEEEecc-ccEEeEeccCCCcHHHHHHHHhhhHhcCCCCC
Q 047136            4 SKRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTD-NMRFTVPLEYLSRNVFIELLRMSEEEFGLPSN   82 (142)
Q Consensus         4 ~~KL~~~~kKWq~~a~~~r~r~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~   82 (142)
                      ..+|++|+|||+++++.+.    +   ..+..+.++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus        12 ~~~~kq~l~r~~s~~~~~~----~---~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~   84 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQG----Y---DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD   84 (104)
T ss_pred             HHHHHHHHHHHHHhcccCC----c---ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            4678999999998754321    1   01113668999999999998 58999999999999999999999999999999


Q ss_pred             CCeeecCchHHHHHHHHHH
Q 047136           83 GPITLPCDSTFLNYVMTLV  101 (142)
Q Consensus        83 G~L~iPC~~~~Fe~vl~~i  101 (142)
                      |+|+||||+++|++++|+|
T Consensus        85 G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         85 MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=4.1e-32  Score=199.85  Aligned_cols=86  Identities=33%  Similarity=0.581  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccccccCCCCCCCCeEEEEecc-----ccEEeEeccCCCcHHHHHHHHhhhHhcCC
Q 047136            5 KRLIQLARKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTD-----NMRFTVPLEYLSRNVFIELLRMSEEEFGL   79 (142)
Q Consensus         5 ~KL~~~~kKWq~~a~~~r~r~s~~~~~~~~~~~~vpkG~~~VyVGe-----~~RfvVp~~yL~hp~F~~LL~~aeeEfG~   79 (142)
                      .+++|++|+.. ++.  |.+.+      ...+.+|||||||||||+     ++||+||++|||||+|++||++|||||||
T Consensus        10 ~~~k~~~~~~~-~~~--~~~~~------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220         10 NATKQILKLNS-LAN--RNRTS------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             HHHHHHHHHHh-hcc--ccccc------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            46788888776 432  21111      112557999999999997     58999999999999999999999999999


Q ss_pred             CC-CCCeeecCchHHHHHHHH
Q 047136           80 PS-NGPITLPCDSTFLNYVMT   99 (142)
Q Consensus        80 ~~-~G~L~iPC~~~~Fe~vl~   99 (142)
                      ++ +|+|+||||++.|++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHH
Confidence            98 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.5e-31  Score=197.68  Aligned_cols=89  Identities=29%  Similarity=0.533  Sum_probs=72.5

Q ss_pred             HHHhhhhhcccCcccccccccccCCCCCCCCeEEEEecc---ccEEeEeccCCCcHHHHHHHHhhhHhcCCCC-CCCeee
Q 047136           12 RKWQKMAAMKRKRISFPRRAAAQNSSVANKGHFVVYTTD---NMRFTVPLEYLSRNVFIELLRMSEEEFGLPS-NGPITL   87 (142)
Q Consensus        12 kKWq~~a~~~r~r~s~~~~~~~~~~~~vpkG~~~VyVGe---~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-~G~L~i   87 (142)
                      +-|+..+..+|+-.+.+++. .+.+..+||||||||||+   ++||+||++|||||+|++||++|||||||++ +|+|+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~-~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   91 (108)
T PLN03219         13 QIFKSQSMRNKNGSSSPSSS-TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTI   91 (108)
T ss_pred             HHHHHHHHhcccCCCCCccC-CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEE
Confidence            45775555555544433322 223668999999999996   6999999999999999999999999999997 699999


Q ss_pred             cCchHHHHHHHHHH
Q 047136           88 PCDSTFLNYVMTLV  101 (142)
Q Consensus        88 PC~~~~Fe~vl~~i  101 (142)
                      |||++.|++++..-
T Consensus        92 PCd~~~F~~ll~~~  105 (108)
T PLN03219         92 PCREESFLHLITSH  105 (108)
T ss_pred             eCCHHHHHHHHHhh
Confidence            99999999998753

>PRK02899 adaptor protein; Provisional

Probab=83.76  E-value=0.95  Score=36.49  Aligned_cols=25  Identities=24%  Similarity=0.751  Sum_probs=21.4

Q ss_pred             cHHHHHHHHhhhHhcCCCCCCCeee
Q 047136           63 RNVFIELLRMSEEEFGLPSNGPITL   87 (142)
Q Consensus        63 hp~F~~LL~~aeeEfG~~~~G~L~i   87 (142)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3578888999999999999999863

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=82.16  E-value=0.62  Score=32.05  Aligned_cols=54  Identities=11%  Similarity=0.204  Sum_probs=40.2

Q ss_pred             ccEEeEeccCCC-c--HHHHHHHHhhhHhcCCCCCCCeeecCchHHHHHHHHHHhcc
Q 047136           51 NMRFTVPLEYLS-R--NVFIELLRMSEEEFGLPSNGPITLPCDSTFLNYVMTLVKGC  104 (142)
Q Consensus        51 ~~RfvVp~~yL~-h--p~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~i~~~  104 (142)
                      +++|.++.+.|. +  ..|..++........-+.+|.+-|-++...|++|+..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            578888887776 4  47888888652222224579999999999999999999984

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00