Citrus Sinensis ID: 047139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
Protein Sequence
MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEcccccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHcccccccccccEEEcccccccccccHHHcccccccEEEccccccEEccccccccccccccEEcccccccccccccccccccccEEEcccccccEEccHHHHHccccccccccccccccEEEEEccccccccccccEEEEEcccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEcccEEEEEcccccccccccEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEEccccccccHHccccEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEEccccccccccccEEEEccccccccccHHHccccccEEEEcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccHccccccEEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHHccEEEcccccccccccccccccccEEEEEccccccccccHHHccccccEEEEEEcccccccccccHHHcccccccEEEcccccHEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHccHccc
Coil and Loop (DISEMBL)
MGNENSASFALLSLVLLSgillpptiqlsfsqpalgsgcKEVEREALLQFKQnltdpsgrlsswvgedccswrgvgcnnrtgsiimlnlnnpfrdsfdsyedDAVHELrgkispsllqlkdlEYLDLslnnfkvldlsnngfnstlPHWLFNITNLlsldlssndlqgdipdgfsslnslqlldlsgnsflegqlsrnlgtlcnlQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYnqltgnlpislgylKNLRYLELWYNSFlgsippslgnltFLEELYLTsnqmngkfpesfgqLSAIRVLELSdnqwegfiTDAHLRNLTSLEELSLIktsnsslsfnisfdwippfklRYLVIRYYqlgpkfptwlrnqTELTTLVLNsasisdtlpsWFLQLNltldeldvggnhlsgripntlvfrfpgsvdlssnrfegpiplwssnltklylrdldisfnsingsipqsvGNLKQLLTLVISnnnlsdmtnnnfsgeipesiGSLLTIRFLVLSnnhlsgeippslkncslmdsldlgenqlsgnipawigesmpslSILRLRsnhfngtipsELCKLSALHILdlshnnllgpipycvgdfsamt
Flexible Loop (DISEMBL)
MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKqnltdpsgrlSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Low Complexity Region (SEG)
MGNENsasfallslvllsgillPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPsllqlkdleyldlslNNFKVLDLSNNGFNSTLPHWLFNITnllsldlssndlQGDIPDGFsslnslqlldlsgnsFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIsnnnlsdmtnnnfsGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Disordered region (IsUnstruct)
********FALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF****
Disordered Region (DISOPRED)
******A***LLSLVLLSGILLPPTIQLSFSQPAL***CKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Disordered Region (DISEMBL)
MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Disordered Region (DISPRO)
**NENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	611	2.2.26 [Sep-21-2011]
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.841	0.452	0.321	1e-57
Q9LP24	1120	Probable leucine-rich rep	no	no	0.888	0.484	0.317	8e-57
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.880	0.514	0.321	9e-56
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.875	0.485	0.329	4e-55
Q9C9H7	847	Receptor-like protein 12	no	no	0.841	0.606	0.296	9e-54
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.852	0.506	0.311	5e-53
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.888	0.492	0.321	2e-52
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.729	0.357	0.344	3e-52
Q9LRT1	1016	Probably inactive leucine	no	no	0.864	0.519	0.329	6e-52
O82318	960	Probably inactive leucine	no	no	0.883	0.562	0.321	1e-51

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 191/595 (32%), Positives = 298/595 (50%), Gaps = 81/595 (13%)

Query: 41  EVEREALLQFKQNLTDPSGRLSSW---VGEDCCSWRGVGC-NNRTGSIIMLNLNNPFRDS 96
           + E +AL  FK NL DP G L+SW        C WRGVGC N+R   I +  L       
Sbjct: 26  QAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTNHRVTEIRLPRL------- 78

Query: 97  FDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNL 156
                     +L G+IS  +  L+ L          + L L +N FN T+P  L   T L
Sbjct: 79  ----------QLSGRISDRISGLRML----------RKLSLRSNSFNGTIPTSLAYCTRL 118

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           LS+ L  N L G +P    +L SL++ +++GN  L G++   +G   +LQ L +S N FS
Sbjct: 119 LSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNR-LSGEIP--VGLPSSLQFLDISSNTFS 175

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276
           G++     GL+     + L  L L YNQLTG +P SLG L++L+YL L +N   G++P +
Sbjct: 176 GQIPS---GLAN---LTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSA 229

Query: 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336
           + N + L  L  + N++ G  P ++G L  + VL LS+N + G +  +   N +    L+
Sbjct: 230 ISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTS----LT 285

Query: 337 LIKTSNSSLSFNISFDWIPP-------FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
           +++     L FN   D + P         L+ L ++  ++  +FP WL N   L  L ++
Sbjct: 286 IVQ-----LGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVS 340

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL---SSNRFEGPIP 446
               S  +P     L   L+EL +  N L+G IP  +  +  GS+D+     N  +G IP
Sbjct: 341 GNLFSGEIPPDIGNLK-RLEELKLANNSLTGEIP--VEIKQCGSLDVLDFEGNSLKGQIP 397

Query: 447 LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS-------------- 492
            +   +  L +  L +  NS +G +P S+ NL+QL  L +  NNL+              
Sbjct: 398 EFLGYMKALKV--LSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLS 455

Query: 493 --DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 550
             D++ N FSG +P SI +L  + FL LS N  SGEIP S+ N   + +LDL +  +SG 
Sbjct: 456 ELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGE 515

Query: 551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVG 605
           +P  +   +P++ ++ L+ N+F+G +P     L +L  ++LS N+  G IP   G
Sbjct: 516 VPVEL-SGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFG 569

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  222 bits (565), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 216/680 (31%), Positives = 307/680 (45%), Gaps = 137/680 (20%)

Query: 42  VEREALLQFKQNLTDPSGRLSSWVGE-------DCCSWRGVGCNNRTGSIIMLNLNNP-- 92
            E  ALL++K   T+ S +LSSWV +        C SW GV CN+R GSI  LNL N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGI 89

Query: 93  ---FRD------SFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLN------------- 130
              F+D      S  +Y D +++ L G I P    L  L Y DLS N             
Sbjct: 90  EGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNL 149

Query: 131 -NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189
            N  VL L  N   S +P  L N+ ++  L LS N L G IP    +L +L +L L  N 
Sbjct: 150 KNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYEN- 208

Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEV----------------SDFIDGL--SECIN 231
           +L G +   LG + ++  L LS N+ +G +                 +++ G+   E  N
Sbjct: 209 YLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGN 268

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
             S+  L L  N+LTG++P SLG LKNL  L L+ N   G IPP LGN+  + +L L++N
Sbjct: 269 MESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNN 328

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFI----------TDAHLRN------------- 328
           ++ G  P S G L  + +L L +N   G I           D  L N             
Sbjct: 329 KLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGN 388

Query: 329 ---------------------LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYY 367
                                L ++E +  +  S + L+ ++   +    KL  L +R  
Sbjct: 389 LKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVN 448

Query: 368 QLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL- 426
            L    P  + N + LTTL+L++ + +   P    +    L  + +  NHL G IP +L 
Sbjct: 449 HLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCK-GRKLQNISLDYNHLEGPIPKSLR 507

Query: 427 ------VFRFPGS------------------VDLSSNRFEGPIPLWSSNLTKL-YLRDLD 461
                   RF G+                  +D S N+F G I   SSN  K   L  L 
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEI---SSNWEKSPKLGALI 564

Query: 462 ISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN 521
           +S N+I G+IP  + N+ QL+ L        D++ NN  GE+PE+IG+L  +  L L+ N
Sbjct: 565 MSNNNITGAIPTEIWNMTQLVEL--------DLSTNNLFGELPEAIGNLTNLSRLRLNGN 616

Query: 522 HLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC 581
            LSG +P  L   + ++SLDL  N  S  IP    +S   L  + L  N F+G+IP  L 
Sbjct: 617 QLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTF-DSFLKLHDMNLSRNKFDGSIP-RLS 674

Query: 582 KLSALHILDLSHNNLLGPIP 601
           KL+ L  LDLSHN L G IP
Sbjct: 675 KLTQLTQLDLSHNQLDGEIP 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  218 bits (556), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 203/631 (32%), Positives = 288/631 (45%), Gaps = 93/631 (14%)

Query: 43  EREALLQFKQNLTDP--SGRLSSWVGED----CCSWRGVGCNNRTGSIIMLNLNNP---- 92
           E  ALL++K   T+   S +LSSWV  +    C SW GV C+   GSII LNL N     
Sbjct: 50  EANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACS--LGSIIRLNLTNTGIEG 107

Query: 93  -FRD-SFDS-----YEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNST 145
            F D  F S     + D +++   G ISP   +   LEY DLS+N               
Sbjct: 108 TFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLV----------GE 157

Query: 146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL 205
           +P  L +++NL +L L  N L G IP     L  +  + +  N  L G +  + G L  L
Sbjct: 158 IPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDN-LLTGPIPSSFGNLTKL 216

Query: 206 QTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265
             L L +N  SG +       SE  N  +L  L L  N LTG +P S G LKN+  L ++
Sbjct: 217 VNLYLFINSLSGSIP------SEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMF 270

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
            N   G IPP +GN+T L+ L L +N++ G  P + G +  + VL L  NQ  G I    
Sbjct: 271 ENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPP-- 328

Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTT 385
              L  +E +  ++ S + L+  +   +     L +L +R  QL    P  + N TELT 
Sbjct: 329 --ELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTV 386

Query: 386 LVLNSASISDTLPSWFLQ----LNLTLDELDVGGNHLSGRIPNTLV-------FRFPGS- 433
           L L++ + +  LP    +     NLTLD+     NH  G +P +L         RF G+ 
Sbjct: 387 LQLDTNNFTGFLPDTICRGGKLENLTLDD-----NHFEGPVPKSLRDCKSLIRVRFKGNS 441

Query: 434 -----------------VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG 476
                            +DLS+N F G +        KL      +S NSI G+IP  + 
Sbjct: 442 FSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVA--FILSNNSITGAIPPEIW 499

Query: 477 NLKQLLTLVISNNNLS----------------DMTNNNFSGEIPESIGSLLTIRFLVLSN 520
           N+ QL  L +S+N ++                 +  N  SG+IP  I  L  + +L LS+
Sbjct: 500 NMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSS 559

Query: 521 NHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL 580
           N  S EIPP+L N   +  ++L  N L   IP  + + +  L +L L  N  +G I S+ 
Sbjct: 560 NRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTK-LSQLQMLDLSYNQLDGEISSQF 618

Query: 581 CKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
             L  L  LDLSHNNL G IP    D  A+T
Sbjct: 619 RSLQNLERLDLSHNNLSGQIPPSFKDMLALT 649

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  216 bits (551), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 199/604 (32%), Positives = 287/604 (47%), Gaps = 69/604 (11%)

Query: 43  EREALLQFKQNLTDPSGRLSSW--VGEDCCSWRGVGCNN-RTGSIIMLNLNNPFRDSFDS 99
           E   LL+FK  L D +G L+SW  +  + C+W G+ C + RT + + LN  N        
Sbjct: 27  EGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLNGMN-------- 78

Query: 100 YEDDAVHELRGKISPSLLQLKDLEYLDLSLN--------------NFKVLDLSNNGFNST 145
                   L G +SP + +L  L  L++S N              + +VLDL  N F+  
Sbjct: 79  --------LSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGV 130

Query: 146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL 205
           +P  L  I  L  L L  N L G IP    +L+SLQ L +  N+ L G +  ++  L  L
Sbjct: 131 IPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNN-LTGVIPPSMAKLRQL 189

Query: 206 QTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265
           + ++   N FSG +   I G        SL  L L  N L G+LP  L  L+NL  L LW
Sbjct: 190 RIIRAGRNGFSGVIPSEISG------CESLKVLGLAENLLEGSLPKQLEKLQNLTDLILW 243

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
            N   G IPPS+GN++ LE L L  N   G  P   G+L+ ++ L L  NQ  G I    
Sbjct: 244 QNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIP--- 300

Query: 326 LRNLTSLEELSLIKTSNSSLSFNI--SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383
            R + +L + + I  S + L+  I   F  I   KL +L      LGP  P  L   T L
Sbjct: 301 -REIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHL-FENILLGP-IPRELGELTLL 357

Query: 384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV-DLSSNRFE 442
             L L+   ++ T+P   LQ    L +L +  N L G+IP  + F    SV D+S+N   
Sbjct: 358 EKLDLSINRLNGTIPQE-LQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLS 416

Query: 443 GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS---------- 492
           GPIP        L L  L +  N ++G+IP+ +   K L  L++ +N L+          
Sbjct: 417 GPIPAHFCRFQTLIL--LSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNL 474

Query: 493 ------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQ 546
                 ++  N  SG I   +G L  +  L L+NN+ +GEIPP + N + +   ++  NQ
Sbjct: 475 QNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQ 534

Query: 547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGD 606
           L+G+IP  +G S  ++  L L  N F+G I  EL +L  L IL LS N L G IP+  GD
Sbjct: 535 LTGHIPKELG-SCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGD 593

Query: 607 FSAM 610
            + +
Sbjct: 594 LTRL 597

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  212 bits (539), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 191/644 (29%), Positives = 294/644 (45%), Gaps = 130/644 (20%)

Query: 39  CKEVEREALLQFKQNLTDPSG--RLSSWVG-----EDCCSWRGVGCNNRTGSIIMLNLNN 91
           C++ +R+ALL+F+      +    ++ W G      DCC W GV CN+++G +I L++ N
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 92  PFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLF 151
            F                                   LNN+   + S           LF
Sbjct: 94  TF-----------------------------------LNNYLKTNSS-----------LF 107

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 211
            +  L  LDL++ +L G+IP    +L+ L L++L  N F+ G++  ++G L  L+ L L+
Sbjct: 108 KLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFV-GEIPASIGNLNQLRHLILA 166

Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271
            N  +GE+   +  LS  +N      LEL  N+L G +P S+G LK LR L L  N+ +G
Sbjct: 167 NNVLTGEIPSSLGNLSRLVN------LELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIG 220

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
            IP SLGNL+ L  L LT NQ+ G+ P S G L  +RV+   +N   G I  +      +
Sbjct: 221 EIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS----FAN 276

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL------------RN 379
           L +LS+   S+++ +    FD      L Y  + Y      FP  L             N
Sbjct: 277 LTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQEN 336

Query: 380 Q-------------TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
           Q             T+L  L+L    +   +P    +L L L+ELD+  N+ +G IP T+
Sbjct: 337 QFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRL-LNLEELDISHNNFTGAIPPTI 395

Query: 427 VFRFP-GSVDLSSNRFEGPIP--LWSSNLTKL----------------YLRDLDISFNSI 467
                   +DLS N  EG +P  LW  N   L                 + +LD++ NS 
Sbjct: 396 SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSF 455

Query: 468 NGSIPQSVGNLKQLLTLVISNNNLS-----------------DMTNNNFSGEIPESIGSL 510
            G IP  +  L  L  L +SNN  S                 ++ +NNFSG +P+     
Sbjct: 456 QGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKA 515

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             +  L +S+N L G+ P SL NC  ++ +++  N++    P+W+ ES+PSL +L LRSN
Sbjct: 516 TELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSN 574

Query: 571 HFNGTIPSELCKL--SALHILDLSHNNLLGPI-PYCVGDFSAMT 611
            F G +      +   +L I+D+SHNN  G + PY   ++  MT
Sbjct: 575 KFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMT 618

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 198/635 (31%), Positives = 287/635 (45%), Gaps = 114/635 (17%)

Query: 43  EREALLQFKQNLTDPSGRLSSWVGED---------CCSWRGVGC--NNRTGSIIMLNLNN 91
           E+E LL FK +L DPS  L  W   +          C W GV C  N     +++ N+N 
Sbjct: 30  EQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHCDANGYVAKLLLSNMN- 88

Query: 92  PFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDL 137
                           L G +S  +     L+ LDLS N F              KV+D+
Sbjct: 89  ----------------LSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDV 132

Query: 138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197
           S N F  T P+ L   T L  ++ SSN+  G +P+   +  +L++LD  G  F EG +  
Sbjct: 133 SVNSFFGTFPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYF-EGSVPS 191

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK 257
           +   L NL+ L LS N F G+V   I  LS      SL  + LGYN   G +P   G L 
Sbjct: 192 SFKNLKNLKFLGLSGNNFGGKVPKVIGELS------SLETIILGYNGFMGEIPEEFGKLT 245

Query: 258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
            L+YL+L   +  G IP SLG L  L  +YL  N++ GK P   G ++++  L+LSDNQ 
Sbjct: 246 RLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQI 305

Query: 318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL----VIRYYQ--LGP 371
            G I    +  L +L+ L+L++              I P K+  L    V+  +Q  L  
Sbjct: 306 TGEIP-MEVGELKNLQLLNLMRN---------QLTGIIPSKIAELPNLEVLELWQNSLMG 355

Query: 372 KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP 431
             P  L   + L  L ++S  +S  +PS  L  +  L +L +  N  SG+IP   +F  P
Sbjct: 356 SLPVHLGKNSPLKWLDVSSNKLSGDIPSG-LCYSRNLTKLILFNNSFSGQIPEE-IFSCP 413

Query: 432 G--SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG------------- 476
               V +  N   G IP  S +L    L+ L+++ N++ G IP  +              
Sbjct: 414 TLVRVRIQKNHISGSIPAGSGDLP--MLQHLELAKNNLTGKIPDDIALSTSLSFIDISFN 471

Query: 477 ----------NLKQLLTLVISNNNLS----------------DMTNNNFSGEIPESIGSL 510
                     +   L T + S+NN +                D++ N+FSG IPE I S 
Sbjct: 472 HLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASF 531

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             +  L L +N L GEIP +L    ++  LDL  N L+GNIPA +G S P+L +L +  N
Sbjct: 532 EKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGAS-PTLEMLNVSFN 590

Query: 571 HFNGTIPSELCKLSALHILDLSHNNLL--GPIPYC 603
             +G IPS +   +A+   DL  NN L  G +P C
Sbjct: 591 KLDGPIPSNML-FAAIDPKDLVGNNGLCGGVLPPC 624

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 217/674 (32%), Positives = 307/674 (45%), Gaps = 131/674 (19%)

Query: 42  VEREALLQFKQNLTDPSGRLSSWVGEDC--CSWRGVGCNNRTGSIIMLNLNNPFRDSFDS 99
           +E + LL+ K    D    L +W   D   C W GV C+N +    +L+LN         
Sbjct: 29  LEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLN--------- 79

Query: 100 YEDDAVHELRGKISPSLLQLKDLEYLDLSLN--------------NFKVLDLSNNGFNST 145
               +   L GK+SPS+  L  L+ LDLS N              + ++L L+NN F+  
Sbjct: 80  ---LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGE 136

Query: 146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSL-QLLDLSGNSFLEGQLSRNLGTLCN 204
           +P  +  + +L +L + +N + G +P    +L SL QL+  S N  + GQL R++G L  
Sbjct: 137 IPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNN--ISGQLPRSIGNLKR 194

Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264
           L + +   N  SG +   I G        SL  L L  NQL+G LP  +G LK L  + L
Sbjct: 195 LTSFRAGQNMISGSLPSEIGG------CESLVMLGLAQNQLSGELPKEIGMLKKLSQVIL 248

Query: 265 WYNSF------------------------LGSIPPSLGNLTFLEELYLTSNQMNGKFPES 300
           W N F                        +G IP  LG+L  LE LYL  N +NG  P  
Sbjct: 249 WENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPRE 308

Query: 301 FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE---------------ELSLIKT-SNSS 344
            G LS    ++ S+N   G I    L N+  LE               ELS +K  S   
Sbjct: 309 IGNLSYAIEIDFSENALTGEIP-LELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLD 367

Query: 345 LSFNISFDWIPPFKLRYL----VIRYYQ--LGPKFPTWLRNQTELTTLVLNSASISDTLP 398
           LS N     IP    +YL    +++ +Q  L    P  L   ++L  L ++   +S  +P
Sbjct: 368 LSINALTGPIP-LGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIP 426

Query: 399 SWFLQLNLTLDELDVGGNHLSGRIP----------------NTLVFRFPG---------S 433
           S +L L+  +  L++G N+LSG IP                N LV RFP          +
Sbjct: 427 S-YLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTA 485

Query: 434 VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS- 492
           ++L  NRF G IP    N + L  + L ++ N   G +P+ +G L QL TL IS+N L+ 
Sbjct: 486 IELGQNRFRGSIPREVGNCSAL--QRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTG 543

Query: 493 ---------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM 537
                          DM  NNFSG +P  +GSL  +  L LSNN+LSG IP +L N S +
Sbjct: 544 EVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRL 603

Query: 538 DSLDLGENQLSGNIPAWIGESMPSLSI-LRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             L +G N  +G+IP  +G S+  L I L L  N   G IP EL  L  L  L L++NNL
Sbjct: 604 TELQMGGNLFNGSIPRELG-SLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNL 662

Query: 597 LGPIPYCVGDFSAM 610
            G IP    + S++
Sbjct: 663 SGEIPSSFANLSSL 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 241/490 (49%), Gaps = 44/490 (8%)

Query: 132 FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL 191
            K LDLSNN    ++P  LF +  L  L L +N L+G +    S+L +LQ L L  N+ L
Sbjct: 362 LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNN-L 420

Query: 192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI 251
           EG+L + +  L  L+ L L  N+FSGE+   I       N +SL  +++  N   G +P 
Sbjct: 421 EGKLPKEISALRKLEVLFLYENRFSGEIPQEIG------NCTSLKMIDMFGNHFEGEIPP 474

Query: 252 SLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 311
           S+G LK L  L L  N  +G +P SLGN   L  L L  NQ++G  P SFG L  +  L 
Sbjct: 475 SIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLM 534

Query: 312 LSDNQWEGFITDA--HLRNLTSLE--------ELSLIKTSNSSLSFNISFDWIPPFKLRY 361
           L +N  +G + D+   LRNLT +          +  +  S+S LSF+++ +         
Sbjct: 535 LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFED----- 589

Query: 362 LVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR 421
                     + P  L N   L  L L    ++  +P W L     L  LD+  N L+G 
Sbjct: 590 ----------EIPLELGNSQNLDRLRLGKNQLTGKIP-WTLGKIRELSLLDMSSNALTGT 638

Query: 422 IPNTLVF-RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQ 480
           IP  LV  +    +DL++N   GPIP W   L++L   +L +S N    S+P  + N  +
Sbjct: 639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL--GELKLSSNQFVESLPTELFNCTK 696

Query: 481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 540
           LL L +  N+L+        G IP+ IG+L  +  L L  N  SG +P ++   S +  L
Sbjct: 697 LLVLSLDGNSLN--------GSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYEL 748

Query: 541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPI 600
            L  N L+G IP  IG+     S L L  N+F G IPS +  LS L  LDLSHN L G +
Sbjct: 749 RLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEV 808

Query: 601 PYCVGDFSAM 610
           P  VGD  ++
Sbjct: 809 PGSVGDMKSL 818

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  206 bits (523), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 204/619 (32%), Positives = 295/619 (47%), Gaps = 91/619 (14%)

Query: 1   MGNENSA--SFAL-LSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDP 57
           MG +     SF L L+L ++S ++   T  +  +   LG          L+ FK +L DP
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLG----------LIVFKSDLNDP 50

Query: 58  SGRLSSWVGED--CCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPS 115
              L SW  +D   CSW  V CN +T  +I L+L+                 L GKI+  
Sbjct: 51  FSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSLDG--------------LALTGKINRG 96

Query: 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           + +L+ L          KVL LSNN F   + + L N  +L  LDLS N+L G IP    
Sbjct: 97  IQKLQRL----------KVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLG 145

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCN-LQTLKLSLNQFSGEVSDFIDGLSECINSSS 234
           S+ SLQ LDL+GNSF  G LS +L   C+ L+ L LS N   G++       S     S 
Sbjct: 146 SITSLQHLDLTGNSF-SGTLSDDLFNNCSSLRYLSLSHNHLEGQIP------STLFRCSV 198

Query: 235 LARLELGYNQLTGNLPISLGY--LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
           L  L L  N+ +GN     G   L+ LR L+L  NS  GSIP  + +L  L+EL L  NQ
Sbjct: 199 LNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQ 258

Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFD 352
            +G  P   G    +  ++LS N + G +     R L  L+ L+    SN+ LS +    
Sbjct: 259 FSGALPSDIGLCPHLNRVDLSSNHFSGELP----RTLQKLKSLNHFDVSNNLLSGD---- 310

Query: 353 WIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELD 412
                               FP W+ + T L  L  +S  ++  LPS    L  +L +L+
Sbjct: 311 --------------------FPPWIGDMTGLVHLDFSSNELTGKLPSSISNLR-SLKDLN 349

Query: 413 VGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI 471
           +  N LSG +P +L   +    V L  N F G IP        L L+++D S N + GSI
Sbjct: 350 LSENKLSGEVPESLESCKELMIVQLKGNDFSGNIP---DGFFDLGLQEMDFSGNGLTGSI 406

Query: 472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL 531
           P+    L + L  +       D+++N+ +G IP  +G  + +R+L LS NH +  +PP +
Sbjct: 407 PRGSSRLFESLIRL-------DLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEI 459

Query: 532 KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDL 591
           +    +  LDL  + L G++PA I ES  SL IL+L  N   G+IP  +   S+L +L L
Sbjct: 460 EFLQNLTVLDLRNSALIGSVPADICESQ-SLQILQLDGNSLTGSIPEGIGNCSSLKLLSL 518

Query: 592 SHNNLLGPIPYCVGDFSAM 610
           SHNNL GPIP  + +   +
Sbjct: 519 SHNNLTGPIPKSLSNLQEL 537

Arabidopsis thaliana (taxid: 3702)

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 285/597 (47%), Gaps = 57/597 (9%)

Query: 43  EREALLQFKQNLTDPSGRLSSWV---GEDCCSWRGVGCNNRTGSIIMLNLNNP------- 92
           E E LL FK ++ DP   LSSW      D C W GV CNN    ++ L+L+         
Sbjct: 31  ELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNN-ISRVVSLDLSGKNMSGQIL 89

Query: 93  ----FRDSFDSYEDDAVHELRGKISPSLLQLKD--LEYLDLSLNNFK------------V 134
               FR  F    + + + L G I   +       L YL+LS NNF              
Sbjct: 90  TAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGFLPNLYT 149

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
           LDLSNN F   + + +   +NL  LDL  N L G +P    +L+ L+ L L+ N  L G 
Sbjct: 150 LDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQ-LTGG 208

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG 254
           +   LG + NL+ + L  N  SGE+   I GLS      SL  L+L YN L+G +P SLG
Sbjct: 209 VPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLS------SLNHLDLVYNNLSGPIPPSLG 262

Query: 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314
            LK L Y+ L+ N   G IPPS+ +L  L  L  + N ++G+ PE   Q+ ++ +L L  
Sbjct: 263 DLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFS 322

Query: 315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 374
           N   G I +     +TSL  L +++  ++  S  I  +      L  L +    L  K P
Sbjct: 323 NNLTGKIPEG----VTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLP 378

Query: 375 TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGS 433
             L +   LT L+L S S+   +P   L +  +L+ + +  N  SG++P      +    
Sbjct: 379 DTLCDSGHLTKLILFSNSLDSQIPPS-LGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNF 437

Query: 434 VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
           +DLS+N  +G I  W  ++ +L +  LD+S N   G +P      K+L  L        D
Sbjct: 438 LDLSNNNLQGNINTW--DMPQLEM--LDLSVNKFFGELPD-FSRSKRLKKL--------D 484

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553
           ++ N  SG +P+ + +   I  L LS N ++G IP  L +C  + +LDL  N  +G IP+
Sbjct: 485 LSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPS 544

Query: 554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
              E    LS L L  N  +G IP  L  + +L  +++SHN L G +P+  G F A+
Sbjct: 545 SFAE-FQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPF-TGAFLAI 599

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	611
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.811	0.517	0.591	1e-165
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.790	0.487	0.593	1e-161
147789266	925	hypothetical protein VITISV_040339 [Viti	0.790	0.522	0.591	1e-161
359496390	1113	PREDICTED: LRR receptor-like serine/thre	0.998	0.548	0.452	1e-157
359488641	1012	PREDICTED: LRR receptor-like serine/thre	0.790	0.477	0.573	1e-157
359488639	1097	PREDICTED: LRR receptor-like serine/thre	0.998	0.556	0.447	1e-155
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.810	0.491	0.558	1e-153
147770493	1024	hypothetical protein VITISV_019847 [Viti	0.998	0.595	0.436	1e-152
359496388	1014	PREDICTED: brassinosteroid LRR receptor	0.808	0.487	0.554	1e-151
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.808	0.487	0.550	1e-150

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 321/543 (59%), Positives = 407/543 (74%), Gaps = 47/543 (8%)

Query: 114 PSLLQLK----DLEYLDLSL-----NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSN 164
           PSLL+L      L  L LSL      +  +LDLSNNGF+ST+PHWLFN+++L+ LDL+SN
Sbjct: 184 PSLLELHMPNCQLSNLSLSLPFLNFTSLSILDLSNNGFDSTIPHWLFNLSSLVYLDLNSN 243

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
           +LQG +PD F +  SLQLLDLS NS +EG+L R LG LC L+TL LS+N+ SGE+++F+D
Sbjct: 244 NLQGGLPDAFQNFTSLQLLDLSKNSNIEGELPRTLGNLCYLRTLILSVNKLSGEIAEFLD 303

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE 284
           GLS C + S+L  L+LG+N+LTGNLP SLG+LKNLRYL+LW NSF GSIP S+G+L+ L+
Sbjct: 304 GLSAC-SYSTLENLDLGFNKLTGNLPDSLGHLKNLRYLQLWSNSFRGSIPESIGSLSSLQ 362

Query: 285 ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NS 343
           ELYL+ NQM G  P+S GQLS++ VLEL++N WEG IT+AH  NL+SL++LS+ K+S N 
Sbjct: 363 ELYLSQNQMGGIIPDSLGQLSSLVVLELNENSWEGVITEAHFANLSSLKQLSITKSSPNV 422

Query: 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ 403
           SL FNIS DW PPFKL Y+ +R  QLGPKFPTWLR Q ELTT+VLN+A IS T+P W  +
Sbjct: 423 SLVFNISSDWAPPFKLTYINLRSCQLGPKFPTWLRTQNELTTIVLNNAGISGTIPDWLWK 482

Query: 404 LNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLR----- 458
           L+L L ELD+  N LSGR+PN+LVF +  +VDLSSN F+GP+PLWSSN++ LYLR     
Sbjct: 483 LDLQLSELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTLYLRGNLFS 542

Query: 459 ---------------DLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------- 492
                          DLDIS+NS+NGSIP S+G+L+ L+TLVISNNNLS           
Sbjct: 543 GPIPQNIGQVMPILTDLDISWNSLNGSIPLSMGDLQALITLVISNNNLSGEIPQFWNKMP 602

Query: 493 -----DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 547
                DM+NN+ SG IP S+GSL  +RFLVLSNN+LSGE+P  L+NCS+++SLDLG+N+ 
Sbjct: 603 SLYIVDMSNNSLSGTIPRSLGSLTALRFLVLSNNNLSGELPSQLQNCSVLESLDLGDNKF 662

Query: 548 SGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF 607
           SGNIP+WIGESMPSL IL L+SN F+G IPSE+C LSALHILDLSHN++ G IP C G+ 
Sbjct: 663 SGNIPSWIGESMPSLLILALQSNFFSGNIPSEICALSALHILDLSHNHVSGFIPPCFGNL 722

Query: 608 SAM 610
           S  
Sbjct: 723 SGF 725

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 309/521 (59%), Positives = 391/521 (75%), Gaps = 38/521 (7%)

Query: 127 LSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
           L+  +  +LDLSNN F+ST+PHWLFN+++L+ LDL+SN+LQG +PD F +  SLQLLDLS
Sbjct: 239 LNFTSLSILDLSNNEFDSTIPHWLFNLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLS 298

Query: 187 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
            NS +EG+  R LG LC L+TL LS+N+ SGE+++F+DGLS C + S+L  L+LG+N+LT
Sbjct: 299 QNSNIEGEFPRTLGNLCCLRTLILSVNKLSGEITEFLDGLSAC-SYSTLENLDLGFNELT 357

Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
           GNLP SLG+LKNLRYL+L  NSF GSIP S+G L+ L+ELYL+ NQM G  P+S GQLS+
Sbjct: 358 GNLPDSLGHLKNLRYLQLRSNSFSGSIPESIGRLSSLQELYLSQNQMGGIIPDSLGQLSS 417

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDWIPPFKLRYLVIR 365
           + VLEL+ N WEG IT+AH  NL+SL++LS+ ++S N SL FN+S DW PPFKL Y+ +R
Sbjct: 418 LVVLELNGNSWEGVITEAHFANLSSLKQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLR 477

Query: 366 YYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT 425
             QLGPKFPTWLR+Q ELTT+VLN+A IS T+P W  +LNL L ELD+  N LSGR+PN+
Sbjct: 478 SCQLGPKFPTWLRSQNELTTVVLNNARISGTIPDWLWKLNLQLRELDIAYNQLSGRVPNS 537

Query: 426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLR--------------------DLDISFN 465
           LVF +  +VDLSSN F+GP+PLWSSN++ LYLR                    DLDIS N
Sbjct: 538 LVFSYLANVDLSSNLFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRN 597

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNNNFSGEIPESIGS 509
           S+NGSIP S+GNL+ L+TLVISNNNLS                DM+NN+ SG IP S+GS
Sbjct: 598 SLNGSIPWSMGNLQALITLVISNNNLSGEIPQFWNKMPSLYIIDMSNNSLSGTIPRSLGS 657

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
           L  +RFLVLS+N+LSGE+P  L+NCS ++SLDLG+N+ SGNIP+WIGESM SL IL LRS
Sbjct: 658 LTALRFLVLSDNNLSGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRS 717

Query: 570 NHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
           N F+G IPSE+C LSALHILDLSHNN+ G IP C G+ S  
Sbjct: 718 NFFSGKIPSEICALSALHILDLSHNNVSGFIPPCFGNLSGF 758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 308/521 (59%), Positives = 390/521 (74%), Gaps = 38/521 (7%)

Query: 127 LSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
           L+  +  +LDLSNN F+ST+PHWLFN+ +L+ LDL+SN+LQG +PD F +  SLQLLDLS
Sbjct: 174 LNFTSLSILDLSNNEFDSTIPHWLFNLXSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLS 233

Query: 187 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
            NS +EG+  R LG LC L+TL LS+N+ SGE+++F+DGLS C + S+L  L+LG+N+LT
Sbjct: 234 QNSNIEGEFPRTLGNLCXLRTLILSVNKLSGEITEFLDGLSAC-SYSTLENLDLGFNELT 292

Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
           GNLP SLG+LKNLRYL+L  NSF GSIP S+G L+ L+ELYL+ NQM G  P+S GQLS+
Sbjct: 293 GNLPDSLGHLKNLRYLQLRSNSFSGSIPESIGXLSSLQELYLSQNQMGGIIPDSLGQLSS 352

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDWIPPFKLRYLVIR 365
           + VLEL+ N WEG IT+AH  NL+SL +LS+ ++S N SL FN+S DW PPFKL Y+ +R
Sbjct: 353 LVVLELNGNSWEGVITEAHFANLSSLXQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLR 412

Query: 366 YYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT 425
             QLGPKFPTWLR+Q ELTT+VLN+A IS T+P W  +L+L L ELD+  N LSGR+PN+
Sbjct: 413 SCQLGPKFPTWLRSQNELTTVVLNNARISGTIPDWLWKLDLQLRELDIAYNQLSGRVPNS 472

Query: 426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD--------------------LDISFN 465
           LVF +  +VDLSSN F+GP+PLWSSN++ LYLRD                    LDIS N
Sbjct: 473 LVFSYLANVDLSSNLFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRN 532

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNNNFSGEIPESIGS 509
           S+NGSIP S+GNL+ L+TLVISNNNLS                DM+NN+ SG IP+S+GS
Sbjct: 533 SLNGSIPLSMGNLQALITLVISNNNLSGEIPQFWNKMPSLYIVDMSNNSLSGTIPKSLGS 592

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
           L  +RFLVLS+N+LSGE+P  L+NCS ++SLDLG+N+ SGNIP+WIGESM SL IL LRS
Sbjct: 593 LTALRFLVLSDNNLSGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRS 652

Query: 570 NHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
           N F+G IPSE+C LSALHILDLSHNN+ G IP C G+ S  
Sbjct: 653 NFFSGKIPSEICALSALHILDLSHNNVSGFIPPCFGNLSGF 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496390|ref|XP_002268557.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 351/776 (45%), Positives = 450/776 (57%), Gaps = 166/776 (21%)

Query: 1   MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGR 60
           M N N++   LL + L S  L   T++L      L   C E+ER+AL+ FKQ LTDPSGR
Sbjct: 105 MANINASIHFLLLIFLSSTFLHLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 164

Query: 61  LSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYED---------DAVHELRGK 111
           LSSWVG DCC WRGV C+ R   +I L L N +  S D+  +          A H   G+
Sbjct: 165 LSSWVGLDCCRWRGVVCSQRAPQVIKLKLRNQYARSPDADGEATGAFGDYYGAAHAFGGE 224

Query: 112 ISPSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFNITNL 156
           IS SLL LK L YLDLS+N F               + L+LS   F  T+P  L N+++L
Sbjct: 225 ISHSLLDLKYLRYLDLSMNYFGGLKIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 284

Query: 157 LSLDLSS-------NDLQ-------------GDI-------------------------- 170
           L LDL+S       NDL              G+I                          
Sbjct: 285 LYLDLNSYSLESVENDLHWLSGLSSLRHLNLGNIDFSKTAAYWHRAVSSLSSLLELRLPG 344

Query: 171 ------PD---GFSSLNSLQLLDLSGNSF-----------------------LEGQLSRN 198
                 PD    F ++ SL +LDLS N F                       L+G +   
Sbjct: 345 CGLSSLPDLSLPFGNVTSLSMLDLSNNGFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPDG 404

Query: 199 LGTLCNLQTLKLSLNQF-------------------------SGEVSDFIDGLSECINSS 233
            G L +L+ + LS N F                         SGE++ F+DGLSEC+N S
Sbjct: 405 FGFLISLKYIDLSSNLFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNGS 464

Query: 234 SLARLELGYN-QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
           SL  L+LG+N +L G LP +LG+LKNL++L LW NSF+GSIP S+GNL+ L+E Y++ NQ
Sbjct: 465 SLESLDLGFNDKLGGFLPDALGHLKNLKFLRLWSNSFVGSIPNSIGNLSSLKEFYISENQ 524

Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISF 351
           MNG  PES GQLSA+  ++LS+N W G IT++H  NLT+L EL++ K S N +L+FN+S 
Sbjct: 525 MNGIIPESVGQLSALVAVDLSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVSS 584

Query: 352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDEL 411
            WIPPFKL YL +R  QLGPKFP WLRNQ +L TLVLN+A ISDT+P WF +L+L L+ L
Sbjct: 585 KWIPPFKLNYLELRTCQLGPKFPAWLRNQNQLKTLVLNNARISDTIPDWFWKLDLQLNLL 644

Query: 412 DVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD------------ 459
           DV  N LSGR+PN+L F     VDLSSNRF GPIP +SSNL+ LYLRD            
Sbjct: 645 DVANNQLSGRVPNSLKFPKNAVVDLSSNRFHGPIPHFSSNLSSLYLRDNLFSGPIPLDVG 704

Query: 460 --------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMT 495
                    D+S+NS+NG+IP S+G +  L +LV+SNN+LS                DM 
Sbjct: 705 KTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVDMA 764

Query: 496 NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI 555
           NN+ SGEIP S+G+L ++ FL+LS N LSGEIP SL+NC +MDS DLG+N+LSGN+P+WI
Sbjct: 765 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMDSFDLGDNRLSGNLPSWI 824

Query: 556 GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
           GE M SL ILRLRSN F+G IPS++C LS LHILDL+H+NL G IP C+G+ S M 
Sbjct: 825 GE-MQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHDNLSGFIPSCLGNLSGMA 879

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488641|ref|XP_003633796.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/521 (57%), Positives = 375/521 (71%), Gaps = 38/521 (7%)

Query: 129 LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188
           + +  +LDLSNNGF+S++PHWLFN ++L  LDL+S++LQG +PDGF  L SL+ +DLS N
Sbjct: 256 VTSLSMLDLSNNGFSSSIPHWLFNFSSLAYLDLNSSNLQGSVPDGFGFLISLKYIDLSSN 315

Query: 189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ-LTG 247
            F+ G L  NLG LCNL+TLKLS N  SGE++ F+DGLSEC+N SSL  L+ G+N  L G
Sbjct: 316 LFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNGSSLESLDSGFNDNLGG 375

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI 307
            LP +LG+LKNL+ L LW NSF+GSIP S+GNL+ L+E Y++ NQMNG  PES GQLSA+
Sbjct: 376 FLPDALGHLKNLKSLRLWSNSFVGSIPNSIGNLSSLKEFYISENQMNGIIPESVGQLSAL 435

Query: 308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDWIPPFKLRYLVIRY 366
             ++LS+N W G IT++H  NLT+L EL++ K S N +L+FN+S  WIPPFKL YL +R 
Sbjct: 436 VAVDLSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVSSKWIPPFKLNYLELRT 495

Query: 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
            QLGPKFP WLRNQ +L TLVLN+A ISDT+P WF +L+L +D LD   N LSGR+PN+L
Sbjct: 496 CQLGPKFPAWLRNQNQLKTLVLNNARISDTIPDWFWKLDLQVDLLDFANNQLSGRVPNSL 555

Query: 427 VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD--------------------LDISFNS 466
            F+    VDLSSNRF GP P +SS L  LYLRD                     D+S+NS
Sbjct: 556 KFQEQAIVDLSSNRFHGPFPHFSSKLNSLYLRDNSFSGPMPRDVGKTMPWLINFDVSWNS 615

Query: 467 INGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNNNFSGEIPESIGSL 510
           +NG+IP S G L  LLTLVISNN+LS                DM NNN SGE+P S+GSL
Sbjct: 616 LNGTIPLSFGKLTNLLTLVISNNHLSGGIPEFWNGLPDLYVLDMNNNNLSGELPSSMGSL 675

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             +RFL++SNNHLSGEIP +L+NC+ + +LDLG N+ SGN+PAWIGE MP+L ILRLRSN
Sbjct: 676 RFVRFLMISNNHLSGEIPSALQNCTAIRTLDLGGNRFSGNVPAWIGERMPNLLILRLRSN 735

Query: 571 HFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            F+G+IPS+LC LSALHILDL  NNL G IP CVG+ S M 
Sbjct: 736 LFHGSIPSQLCTLSALHILDLGENNLSGFIPSCVGNLSGMV 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488639|ref|XP_003633795.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 347/775 (44%), Positives = 443/775 (57%), Gaps = 165/775 (21%)

Query: 1   MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGR 60
           M N N++   LL + L S  L   T++L      L   C E+ER+ L+QFKQ LTDPSGR
Sbjct: 90  MANINASIHFLLLIFLSSTFLHLETVKLGSCNGVLNVSCTEIERKTLVQFKQGLTDPSGR 149

Query: 61  LSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYED--------DAVHELRGKI 112
           LSSWVG DCC WRGV C+ R   +I L L N +  S D  E          A H   G+I
Sbjct: 150 LSSWVGLDCCRWRGVVCSQRAPQVIKLQLRNRYARSPDDGEATCAFGDYYGAAHAFGGEI 209

Query: 113 SPSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFNITNLL 157
           S SLL LK L YLDLS+N F               + L+LS   F  T+P  L N+++LL
Sbjct: 210 SHSLLDLKYLRYLDLSMNYFGGLKIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSLL 269

Query: 158 SLDLSS-------NDLQ-------------GDI--------------------------- 170
            LDL+S       NDL              G+I                           
Sbjct: 270 YLDLNSYSLESVENDLHWLSGLSSLRHLDLGNIDFSKAAAYWHRAVSSLSSLLELRLPGC 329

Query: 171 --------PDGFSSLNSLQLLDLSGNSF-----------------------LEGQLSRNL 199
                   P  F ++ SL +LDLS N F                       L+G +    
Sbjct: 330 GLSSLPDLPLPFGNVTSLSMLDLSNNGFSSSIPHWLFNFSSLAYLDLNSNNLQGSVPDGF 389

Query: 200 GTLCNLQTLKLSLNQFSG-------------------------EVSDFIDGLSECINSSS 234
           G L +L+ + LS N F G                         E++ F+DGLSEC+N SS
Sbjct: 390 GFLISLKYIDLSSNLFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNGSS 449

Query: 235 LARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
           L  L+LG+N  L G LP +LG+LKNL+ L LW NSF+GSIP S+GNL+ L+E Y++ NQM
Sbjct: 450 LESLDLGFNDNLGGFLPDALGHLKNLKSLRLWSNSFVGSIPNSIGNLSSLKEFYISENQM 509

Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFD 352
           NG  PES GQLSA+  +++S+N W G IT++H  NLT+L EL++ K S N +L+FN+S  
Sbjct: 510 NGIIPESVGQLSALVAVDVSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVSSK 569

Query: 353 WIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELD 412
           WIPPFKL YL +R  QLGPKFP WLRNQ +L TLVLN+A ISDT+P WF +L+L +D LD
Sbjct: 570 WIPPFKLNYLELRICQLGPKFPAWLRNQNQLKTLVLNNARISDTIPDWFWKLDLQVDLLD 629

Query: 413 VGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD------------- 459
              N LSGR+PN+L F+    VDLSSNRF GP P +SS L+ LYLRD             
Sbjct: 630 FANNQLSGRVPNSLKFQEQAIVDLSSNRFHGPFPHFSSKLSSLYLRDNSFSGPMPRDVGK 689

Query: 460 -------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTN 496
                   D+S+NS+NG+IP S+G +  L +LV+SNNNLS                DM N
Sbjct: 690 TMPWLINFDVSWNSLNGTIPLSIGKITGLASLVLSNNNLSGEIPLIWNDKPDLYIVDMAN 749

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
           N+ SGEIP S+G+L ++ FL+LS N LSGEIP SL+NC +MDS DLG+N+LSGN+P+WIG
Sbjct: 750 NSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMDSFDLGDNRLSGNLPSWIG 809

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
           E M SL ILRLRSN F+G IPS++C LS LHILDL+H+NL G IP C+G+ S M 
Sbjct: 810 E-MQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHDNLSGFIPSCLGNLSGMA 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 298/534 (55%), Positives = 381/534 (71%), Gaps = 39/534 (7%)

Query: 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           L  L DL     ++ +  VLDLSNN FNS++PHWLFN ++L  LDL+SN+LQG +P+GF 
Sbjct: 243 LSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEGFG 302

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
            L SL+ +D S N F+ G L R+LG LCNL+TLKLS N  SGE+++F+DGLSEC+NSSSL
Sbjct: 303 YLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSSSL 362

Query: 236 ARLELGYN-QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
             L+LG+N +L G LP SLG+LKNL+ L LW NSF+GSIP S+GNL+ L+  Y++ NQMN
Sbjct: 363 ESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQMN 422

Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDW 353
           G  PES GQLSA+  L+LS+N W G +T++H  NLTSL EL++ K+S N +L FN++  W
Sbjct: 423 GIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVNSKW 482

Query: 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDV 413
           IPPFKL YL +R  QLGPKFP WLR Q +L T+VLN+A ISDT+P WF +L+L L+ LDV
Sbjct: 483 IPPFKLNYLELRTCQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELLDV 542

Query: 414 GGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD-------------- 459
             N LSGR+PN+L F     VDLSSNRF GP P +SSNL+ LYLRD              
Sbjct: 543 ANNQLSGRVPNSLKFPENAVVDLSSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVGKT 602

Query: 460 ------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNN 497
                  D+S+NS+NG+IP S+G +  L +LV+SNN+LS                DM NN
Sbjct: 603 MPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVDMENN 662

Query: 498 NFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557
           + SGEIP S+G+L ++ FL+LS N LSGEIP SL+NC  MDS DLG+N+LSGN+P+WIGE
Sbjct: 663 SLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDSFDLGDNRLSGNLPSWIGE 722

Query: 558 SMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            M SL ILRLRSN F+G IPS++C LS LHILDL+HNNL G +P C+G+ S M 
Sbjct: 723 -MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPSCLGNLSGMA 775

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770493|emb|CAN78141.1| hypothetical protein VITISV_019847 [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 346/793 (43%), Positives = 444/793 (55%), Gaps = 183/793 (23%)

Query: 1   MGNENSASFALLSLVLLSGILLPPTIQLSFSQPALGSGCKEVEREALLQFKQNLTDPSGR 60
           M N N++   LL + L S  L   T++L      L   C E+ER+AL+ FKQ LTDPSGR
Sbjct: 1   MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 60

Query: 61  LSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFD-------SYEDD--AVHELRGK 111
           LSSWVG DCC W GV C+ R   +I L L N +    D       ++EDD  A H   G+
Sbjct: 61  LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARXPDANDEDTGAFEDDYGAAHAFGGE 120

Query: 112 ISPSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLP--------- 147
           IS SLL LKDL YLDLS+NNF               + L+LS   F  T+P         
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180

Query: 148 -----------------HWLFNITNLLSLDLSSNDLQG---------------------- 168
                            HWL  +++L  L+L + DL                        
Sbjct: 181 LYLDLXSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLPR 240

Query: 169 -------DIPDGFSSLNSLQLLDLSGNSF-----------------------LEGQLSRN 198
                  D+P  F ++ SL +LDLS N F                       L+G +   
Sbjct: 241 CGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEG 300

Query: 199 LG-------------------------TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
            G                          LCNL+TLKLS N  SGE+++F+DGLSEC+NSS
Sbjct: 301 FGYLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSS 360

Query: 234 SLARLELGYN-QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
           SL  L+LG+N +L G LP SLG+LKNL+ L LW NSF+GSIP S+GNL+ L+  Y++ NQ
Sbjct: 361 SLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQ 420

Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISF 351
           MNG  PES GQLSA+  L+LS+N W G +T++H  NLTSL EL++ K+S N +L FN++ 
Sbjct: 421 MNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVNS 480

Query: 352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDEL 411
            WIPPFKL YL +R  QLGPKFP WLR Q +L T+VLN+A ISDT+P WF +L+L L+ L
Sbjct: 481 KWIPPFKLNYLELRTCQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELL 540

Query: 412 DVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD------------ 459
           DV  N LSGR+PN+L F     VDLSSNRF GP P +SSNL+ LYLRD            
Sbjct: 541 DVANNQLSGRVPNSLKFPENAVVDLSSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVG 600

Query: 460 --------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMT 495
                    D+S+NS+NG+IP S+G +  L +LV+SNN+LS                DM 
Sbjct: 601 KTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVDME 660

Query: 496 NNNFSGEIPESIGSLLTIRFLVLSNNHL-------SGE----------IPPSLKNCSLMD 538
           NN+ SGEIP S+G+L ++ FL+LS N L       + E          I    +NC  MD
Sbjct: 661 NNSLSGEIPSSMGTLNSLMFLILSGNKLFRGNSFFTAEFKDMDSXDLAIIDXPENCKDMD 720

Query: 539 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLG 598
           S DLG+N+LSGN+P+WIGE M SL ILRLRSN F+G IPS++C LS LHILDL+HNNL G
Sbjct: 721 SFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSG 779

Query: 599 PIPYCVGDFSAMT 611
            +P C+G+ S M 
Sbjct: 780 SVPSCLGNLSGMA 792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496388|ref|XP_003635224.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 296/534 (55%), Positives = 380/534 (71%), Gaps = 40/534 (7%)

Query: 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           L  L DL     ++ +  VLDLSNN FNS++PHWLFN ++L  LDL+SN+LQG +P+GF 
Sbjct: 243 LSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEGFG 302

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
            L SL+ +D S N F+ G L R+LG LCNL+TLKLS N  SGE+++F+DGLSEC+NSSSL
Sbjct: 303 YLISLKYIDFSSNLFI-GHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSSSL 361

Query: 236 ARLELGYN-QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
             L+LG+N +L G LP SLG+LKNL+ L LW NSF+GSIP S+GNL+ L+  Y++ NQMN
Sbjct: 362 ESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQMN 421

Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDW 353
           G  PES GQLSA+  L+LS+N W G +T++H  NLTSL EL++ K+S N +L FN++  W
Sbjct: 422 GIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVNSKW 481

Query: 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDV 413
           IPPFKL YL ++  QLGPKFP WLR Q +L T+VLN+A ISDT+P WF +L+L L+ LDV
Sbjct: 482 IPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELLDV 541

Query: 414 GGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD-------------- 459
             N LSGR+PN+L F     VDL SNRF GP P +SSNL+ LYLRD              
Sbjct: 542 ANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVGKT 601

Query: 460 ------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNN 497
                  D+S+NS+NG+IP S+G +  L +LV+SNN+LS                DM NN
Sbjct: 602 MPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGEIPLIWNDKPDLYIVDMANN 661

Query: 498 NFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557
           + SGEIP S+G+L ++ FL+LS N LSGEIP SL+NC  MDS DLG+N+LSGN+P+WIGE
Sbjct: 662 SLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDSFDLGDNRLSGNLPSWIGE 721

Query: 558 SMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            M SL ILRLRSN F+G IPS++C LS LHILDL+HNNL G +P C+G+ S M 
Sbjct: 722 -MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPSCLGNLSGMA 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/534 (55%), Positives = 379/534 (70%), Gaps = 40/534 (7%)

Query: 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           L  L DL     ++ +  VLDLSNN FNS++PHWLFN ++L  LDL+SN+LQG +P+GF 
Sbjct: 243 LSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEGFG 302

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
            L SL+ +D S N F+ G L R+LG LCNL+TLKLS N  SGE+++F+DGLSEC+NSSSL
Sbjct: 303 YLISLKYIDFSSNLFI-GHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSSSL 361

Query: 236 ARLELGYN-QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
             L+LG+N +L G LP SLG+LKNL+ L LW NSF+GSIP S+GNL+ L+  Y++ NQMN
Sbjct: 362 ESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQMN 421

Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS-NSSLSFNISFDW 353
           G  PES GQLSA+  L+LS+N W G +T++H  NLTSL EL++ K+  N +L FN++  W
Sbjct: 422 GIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSFLNITLVFNVNSKW 481

Query: 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDV 413
           IPPFKL YL ++  QLGPKFP WLR Q +L T+VLN+A ISDT+P WF +L+L L+ LDV
Sbjct: 482 IPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELLDV 541

Query: 414 GGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRD-------------- 459
             N LSGR+PN+L F     VDL SNRF GP P +SSNL+ LYLRD              
Sbjct: 542 ANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVGKT 601

Query: 460 ------LDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNN 497
                  D+S+NS+NG+IP S+G +  L +LV+SNN+LS                DM NN
Sbjct: 602 MPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGEIPLIWNDKPDLYIVDMANN 661

Query: 498 NFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557
           + SGEIP S+G+L ++ FL+LS N LSGEIP SL+NC  MDS DLG+N+LSGN+P+WIGE
Sbjct: 662 SLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDSFDLGDNRLSGNLPSWIGE 721

Query: 558 SMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            M SL ILRLRSN F+G IPS++C LS LHILD++HNNL G +P C+G+ S M 
Sbjct: 722 -MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDVAHNNLSGSVPSCLGNLSGMA 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	611
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.757	0.511	0.373	3.4e-77
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.875	0.554	0.282	3.7e-51
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.891	0.558	0.292	4.2e-48
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.891	0.672	0.284	1.1e-47
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.870	0.509	0.289	1.5e-47
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.639	0.342	0.346	3.1e-47
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.885	0.565	0.277	1.1e-46
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.880	0.531	0.28	2.1e-46
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.734	0.359	0.336	2.1e-46
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.736	0.359	0.315	2.8e-46

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 179/479 (37%), Positives = 254/479 (53%)

Query:   133 KVLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLE 192
             +VLDLS N  NS +P+WLF +T            QG IP GF                L+
Sbjct:   250 EVLDLSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQ 309

Query:   193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS 252
             G++   LG L  L+ L LS N+ +G++  F+D  S     +SL  L+L  N+L G LP S
Sbjct:   310 GEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRN-KGNSLVFLDLSSNKLAGTLPES 368

Query:   253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
             LG L+NL+ L+L  NSF GS+P S+GN+  L++L L++N MNG   ES GQL+ +  L L
Sbjct:   369 LGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNL 428

Query:   313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK 372
               N W G +  +H  NL SL+ + L      SL F +   WIPPF+L  + I   ++G  
Sbjct:   429 MANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-L 487

Query:   373 FPTWLRNQTELTTLVLNSASISDTLP-SWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP 431
             FP WL+ QT+L  + L +  I DT+P SWF  ++  +  L +  N + GR+P  L F   
Sbjct:   488 FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKL 547

Query:   432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXX 491
              ++DLSSN FEG  PLWS+N T+L L +     N+ +GS+PQ++  L   +  +      
Sbjct:   548 NTIDLSSNNFEGTFPLWSTNATELRLYE-----NNFSGSLPQNIDVLMPRMEKIYLFSNS 602

Query:   492 XXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI 551
                      G IP S+  +  ++ L L  NH SG  P       ++  +D+ EN LSG I
Sbjct:   603 FT-------GNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEI 655

Query:   552 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
             P  +G  +PSLS+L L  N   G IP  L   S L  +DL  N L G +P  VG  S++
Sbjct:   656 PESLG-MLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSL 713

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
 Identities = 170/602 (28%), Positives = 266/602 (44%)

Query:    39 CKEVEREALLQFKQNL---TDPSGRLSSWVGE---DCCSWRGVGCNNRTGSIIMLNLNN- 91
             C + E+ AL + ++++   T+    L +W  +   DCC W+GV CN  +G +  ++    
Sbjct:    27 CIDEEKIALFELRKHMISRTESESVLPTWTNDTTSDCCRWKGVACNRVSGRVTEISFGGL 86

Query:    92 PFRDS-------FDSYEDDAVHELRGKISPXXXXXXXXXXXXXXXNNFKVLDLSNNGFNS 144
               +D+          +ED     L                        ++LDL++N FN+
Sbjct:    87 SLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNN 146

Query:   145 TLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLEGQLS-RNLGTLC 203
             ++ H+L   T             G  P                     G +  + L +L 
Sbjct:   147 SIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLR 206

Query:   204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 263
              L+ L LS N+FSG +   + G   C  +  L  ++ G  +L            N++ L+
Sbjct:   207 KLKALDLSGNEFSGSME--LQG-KFC--TDLLFSIQSGICELN-----------NMQELD 250

Query:   264 LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD 323
             L  N  +G +P  L +LT L  L L+SN++ G  P S G L ++  L L DN +EG  + 
Sbjct:   251 LSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSF 310

Query:   324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383
               L NL++L  L L   S SSL       W P F+L  + +R   +  K P +L +Q +L
Sbjct:   311 GSLANLSNLMVLKLCSKS-SSLQVLSESSWKPKFQLSVIALRSCNM-EKVPHFLLHQKDL 368

Query:   384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGN-HLSGRIPNT---LVFRFPGSVDLSSN 439
               + L+  +IS  LPSW L  N  L  L +  N   S +IP +   L+F     +D+S+N
Sbjct:   369 RHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHNLLF-----LDVSAN 423

Query:   440 RFEGPIPLWSSNLTKLY--LRDLDISFNSINGSIPQSVGNLK--QLLTLV---------- 485
              F    P    N+  ++  LR L+ S N+   ++P S+GN+   Q + L           
Sbjct:   424 DFNHLFP---ENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPR 480

Query:   486 -----IXXXXXXXXXXXXXXGEI-PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDS 539
                                 GEI PES  +   I  L + NN  +G+I   L++   ++ 
Sbjct:   481 SFVNGCYSMAILKLSHNKLSGEIFPEST-NFTNILGLFMDNNLFTGKIGQGLRSLINLEL 539

Query:   540 LDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGP 599
             LD+  N L+G IP+WIGE +PSL+ L +  N   G IP  L   S+L +LDLS N+L G 
Sbjct:   540 LDMSNNNLTGVIPSWIGE-LPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGV 598

Query:   600 IP 601
             IP
Sbjct:   599 IP 600

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 4.2e-48, Sum P(2) = 4.2e-48
 Identities = 180/615 (29%), Positives = 270/615 (43%)

Query:    39 CKEVEREALLQFKQNLTDPSGR------LSSWVGE---DCCSWRGVGCNNRTGSIIMLNL 89
             C E ER+ALL+ K+ +   +        L +W  +   +CC W G+ CN  +G II L++
Sbjct:    27 CIEKERKALLELKKYMISKTADWGLDSVLPTWTNDTKSNCCRWEGLKCNQTSGRIIELSI 86

Query:    90 NNP-FRDS-------FDSYEDDAVHELRGKISPXXXXXXXXXXXXXXXN---NFKVLDLS 138
                 F++S          +E+     L G+I                     N ++LDLS
Sbjct:    87 GQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLS 146

Query:   139 NNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLEGQLSRN 198
             +N FN+++  +L   T             G +P                     G +   
Sbjct:   147 SNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPE- 205

Query:   199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGY-LK 257
                L  L+ L LS N FS  V      L E    ++L  L L +N L G +P  +   +K
Sbjct:   206 FTHLEKLKALDLSANDFSSLVE-----LQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMK 260

Query:   258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             NLR L+L  N F G +P  LGNL  L  L L+SNQ++G  P SF  L ++  L LSDN +
Sbjct:   261 NLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNF 320

Query:   318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL 377
             EGF +   L NLT L+   L  TS   L      +W+P F+L    + +  LG K P +L
Sbjct:   321 EGFFSLNPLANLTKLKVFRLSSTSEM-LQVETESNWLPKFQLTVAALPFCSLG-KIPNFL 378

Query:   378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLS-GRIPNTLVFRFPGSVDL 436
               QT L  + L+S  +S  +P+W L+ N  L  L +  N  +  +IP T+V +    +D 
Sbjct:   379 VYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQIP-TIVHKLQ-VLDF 436

Query:   437 SSNRFEGPIPLWSSNLTKLYLRDLDI--SFNSINGSIPQSVGNLKQLLTLVIXXXXXXXX 494
             S+N   G +P    N+  +  R L +  S N   G++P S+G +  +  L +        
Sbjct:   437 SANDITGVLP---DNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFS-- 491

Query:   495 XXXXXXGEIPESI--G--SLLTIRF-------------------LVLS--NNHLSGEIPP 529
                   GE+P S+  G  SL+T++                    +VL   NN  +GEI  
Sbjct:   492 ------GELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGV 545

Query:   530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589
              L+    +   D   N+L+G I + I      L +L L +N   GT+P  L  +  L+ L
Sbjct:   546 GLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFL 605

Query:   590 DLSHNNLLGPIPYCV 604
             DLS N L G +P  V
Sbjct:   606 DLSGNLLSGDLPSSV 620

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 1.1e-47, P = 1.1e-47
 Identities = 173/609 (28%), Positives = 264/609 (43%)

Query:    30 FSQPALGSGCKEVEREALLQFKQ----NLTD---PSGRLSSW-VGEDCCSWRGVGCNNRT 81
             F  P L   C + +R++LL+FK     N+ D       L +W    DCC W  V CN  +
Sbjct:    15 FFIPQLSFSCPQDQRQSLLEFKNLLIHNIKDNYTAFEELGTWRPNSDCCKWLRVTCNASS 74

Query:    82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPXXXXXXXXXXXXXXXNNFKVLDLSNNG 141
              S  +++LN      F              + P               N+   LD+S N 
Sbjct:    75 PSKEVIDLN-----LF-------------LLIPPGLVSSSILRPILRINSLVGLDVSFNN 116

Query:   142 FNSTLPHWLF-NITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLEGQLSRNLG 200
                 +P + F N+T             G IP                   + G LS ++ 
Sbjct:   117 IQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNV-IGGTLSGDIK 175

Query:   201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR 260
              L NLQ L L  N   G +   I  L E      L  L L  N    ++P S+  L  L+
Sbjct:   176 ELKNLQELILDENLIGGAIPSEIGSLVE------LLTLTLRQNMFNSSIPSSVSRLTKLK 229

Query:   261 YLELWYNSFLGS-IPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW-E 318
              ++L  N+FL S IP  +GNL  L  L L+ N+++G  P S   L  +  L+L +N    
Sbjct:   230 TIDL-QNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENNNGLS 288

Query:   319 GFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR 378
             G I  A L  L  L+ L L    N+ L +N +    P FKL +L +R   L    P WL+
Sbjct:   289 GEIPAAWLFGLQKLKVLRL--EGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLK 346

Query:   379 NQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGS--VDL 436
             NQT L  L L+   +    P W   L +    + +  N L+G +P  L F+ P    + L
Sbjct:   347 NQTALVYLDLSINRLEGRFPKWLADLKIR--NITLSDNRLTGSLPPNL-FQRPSLYYLVL 403

Query:   437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXX-- 494
             S N F G IP     + +  +  L +S N+ +GS+P+S+  +  L  L +          
Sbjct:   404 SRNNFSGQIP---DTIGESQVMVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP 460

Query:   495 -------------XXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 541
                                G++P   G   ++  L++S N+ SGE P + +N S +  LD
Sbjct:   461 RFRPESYLEWLDISSNEFSGDVPAYFGGSTSM--LLMSQNNFSGEFPQNFRNLSYLIRLD 518

Query:   542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
             L +N++SG + + I +   S+ +L LR+N   G+IP  +  L++L +LDLS NNL G +P
Sbjct:   519 LHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLP 578

Query:   602 YCVGDFSAM 610
               +G+ + M
Sbjct:   579 SSLGNLTCM 587

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.5e-47, P = 1.5e-47
 Identities = 165/569 (28%), Positives = 252/569 (44%)

Query:    43 EREALLQFKQNLTDP--SGRLSSWVGED----CCSWRGVGCNNRTGSIIMLNLNNP-FRD 95
             E  ALL++K   T+   S +LSSWV  +    C SW GV C+   GSII LNL N     
Sbjct:    50 EANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACS--LGSIIRLNLTNTGIEG 107

Query:    96 SFDSYEDDAVHELRGKISPXXXXXXXXXXXXXXXNNFKVLDLSNNGFNSTLPHWLFNITX 155
             +F+ +   ++  L                     +  +  DLS N     +P  L +++ 
Sbjct:   108 TFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSN 167

Query:   156 XXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLEGQLSRNLGTLCNLQTLKLSLNQF 215
                         G IP                   L G +  + G L  L  L L +N  
Sbjct:   168 LDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDN-LLTGPIPSSFGNLTKLVNLYLFINSL 226

Query:   216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275
             SG +       SE  N  +L  L L  N LTG +P S G LKN+  L ++ N   G IPP
Sbjct:   227 SGSIP------SEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPP 280

Query:   276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL 335
              +GN+T L+ L L +N++ G  P + G +  + VL L  NQ  G I    L  + S+ +L
Sbjct:   281 EIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPP-ELGEMESMIDL 339

Query:   336 SLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD 395
              +   S + L+  +   +     L +L +R  QL    P  + N TELT L L++ + + 
Sbjct:   340 EI---SENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTG 396

Query:   396 TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTK 454
              LP    +    L+ L +  NH  G +P +L   +    V    N F G I    S    
Sbjct:   397 FLPDTICRGG-KLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDI----SEAFG 451

Query:   455 LY--LRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLT 512
             +Y  L  +D+S N+ +G +  +    ++L+  ++              G IP  I ++  
Sbjct:   452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSIT--------GAIPPEIWNMTQ 503

Query:   513 IRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 572
             +  L LS+N ++GE+P S+ N + +  L L  N+LSG IP+ I   + +L  L L SN F
Sbjct:   504 LSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGI-RLLTNLEYLDLSSNRF 562

Query:   573 NGTIPSELCKLSALHILDLSHNNLLGPIP 601
             +  IP  L  L  L+ ++LS N+L   IP
Sbjct:   563 SSEIPPTLNNLPRLYYMNLSRNDLDQTIP 591

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 3.1e-47, P = 3.1e-47
 Identities = 150/433 (34%), Positives = 220/433 (50%)

Query:   191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
             + G L  +LG L  L+TL +     SGE+       S+  N S L  L L  N L+G++P
Sbjct:   238 VSGNLPSSLGKLKKLETLSIYTTMISGEIP------SDLGNCSELVDLFLYENSLSGSIP 291

Query:   251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
               +G L  L  L LW NS +G IP  +GN + L+ + L+ N ++G  P S G+LS +   
Sbjct:   292 REIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEF 351

Query:   311 ELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL---------SFNISFDW-------I 354
              +SDN++ G I    + N +SL +L L K   S L            + F W       I
Sbjct:   352 MISDNKFSGSIPTT-ISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSI 410

Query:   355 PP-----FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLD 409
             PP       L+ L +    L    P+ L     LT L+L S S+S  +P      + +L 
Sbjct:   411 PPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCS-SLV 469

Query:   410 ELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
              L +G N ++G IP+ +   +    +D SSNR  G +P    + ++L +  +D+S NS+ 
Sbjct:   470 RLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM--IDLSNNSLE 527

Query:   469 GSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
             GS+P  V +L  L  L +              G+IP S+G L+++  L+LS N  SG IP
Sbjct:   528 GSLPNPVSSLSGLQVLDVSANQFS--------GKIPASLGRLVSLNKLILSKNLFSGSIP 579

Query:   529 PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI-LRLRSNHFNGTIPSELCKLSALH 587
              SL  CS +  LDLG N+LSG IP+ +G+ + +L I L L SN   G IPS++  L+ L 
Sbjct:   580 TSLGMCSGLQLLDLGSNELSGEIPSELGD-IENLEIALNLSSNRLTGKIPSKIASLNKLS 638

Query:   588 ILDLSHNNLLGPI 600
             ILDLSHN L G +
Sbjct:   639 ILDLSHNMLEGDL 651

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 164/592 (27%), Positives = 265/592 (44%)

Query:    39 CKEVEREALLQFKQN--LTDPS-------G-----RLSSWVGE-DCCSWRGVGCNNRTGS 83
             C+  +R+ALL FK    +  PS       G     +  SW    DCC+W GV CN ++G 
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGE 96

Query:    84 IIMLNLN-NPFRDSFDSYEDDA-VHELRGKISPXXXXXXXXXXXXXXXNNFKVLDLSNNG 141
             +I L+L+ +     F S      +H L                     ++   LDLS+N 
Sbjct:    97 VIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQITSSIENLSHLTYLDLSSNH 156

Query:   142 FNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXFLEGQLSRNLGT 201
             F+  + + + N++             G  P                  F  GQ   ++G 
Sbjct:   157 FSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFF-GQFPSSIGG 215

Query:   202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
             L +L TL L  N+FSG++   I  LS      +L  L+L  N  +G +P  +G L  L +
Sbjct:   216 LSHLTTLSLFSNKFSGQIPSSIGNLS------NLTTLDLSNNNFSGQIPSFIGNLSQLTF 269

Query:   262 LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFI 321
             L L+ N+F+G IP S GNL  L  LY+  N+++G FP     L+ + +L LS+N++ G +
Sbjct:   270 LGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTL 329

Query:   322 TDAHLRNLTSLEELSLIKTSNSSLSFNI-SFDWIPPFKLRYLVIRYYQL-GP-KFPTWLR 378
                   N+TSL  L     S+++ +    SF +  P  L Y+ +   QL G  +F   + 
Sbjct:   330 PP----NITSLSNLMDFDASDNAFTGTFPSFLFTIP-SLTYIRLNGNQLKGTLEFGN-IS 383

Query:   379 NQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSS 438
             + + L  L + + +    +PS   +L + L  LD+   +  G +  ++       +DL+ 
Sbjct:   384 SPSNLYELDIGNNNFIGPIPSSISKL-VKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNI 442

Query:   439 NRFEGP--IPL--WSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXX 494
             +       I L  + S   +L L  LD+S N ++ +   SV +    L   +        
Sbjct:   443 SHLNTTTRIDLNYFLSYFKRLLL--LDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGIT 500

Query:   495 XXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG-NIPA 553
                    E PE + +   + FL +SNN + G++P  L    ++  ++L  N L G   P+
Sbjct:   501 -------EFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPS 553

Query:   554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVG 605
                +  PSL  L   +N+F G IPS +C L +L+ LDLS NN  G IP C+G
Sbjct:   554 ---KPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMG 602

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 161/575 (28%), Positives = 257/575 (44%)

Query:    43 EREALLQFKQNLTDPSGRLSSWVGEDC---CSWRGVGCNNRTGSIIMLNLNNPFRDSFDS 99
             E   LL  K  L DP   L  W   D    C+W GV CN+  G++  L+L      +   
Sbjct:    30 ELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRCNSN-GNVEKLDLAGM---NLTG 85

Query:   100 YEDDAVHELRGKISPXXXXXXXXXXXXXXXNNFKVLDLSNNGFNSTLPHWLFNITXXXXX 159
                D++ +L   +S                   K +D+S N F+ +L  +LF+       
Sbjct:    86 KISDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSL--FLFSNESLGLV 143

Query:   160 XXXXXXXQ--GDIPDGFXXXXXXXXXXXXXXXFLEGQLSRNLGTLCNLQTLKLSLNQFSG 217
                       G++ +                 F +G L  +   L  L+ L LS N  +G
Sbjct:   144 HLNASGNNLSGNLTEDLGNLVSLEVLDLRGN-FFQGSLPSSFKNLQKLRFLGLSGNNLTG 202

Query:   218 EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL 277
             E+   +  L       SL    LGYN+  G +P   G + +L+YL+L      G IP  L
Sbjct:   203 ELPSVLGQLP------SLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSEL 256

Query:   278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
             G L  LE L L  N   G  P   G ++ ++VL+ SDN   G I       +T L+ L L
Sbjct:   257 GKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIP----MEITKLKNLQL 312

Query:   338 IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL 397
             +    + LS +I        +L+ L +    L  + P+ L   + L  L ++S S S  +
Sbjct:   313 LNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEI 372

Query:   398 PSWFLQL-NLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPIPLWSSNLTKL 455
             PS      NLT  +L +  N  +G+IP TL   +    V + +N   G IP+    L KL
Sbjct:   373 PSTLCNKGNLT--KLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKL 430

Query:   456 YLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRF 515
               + L+++ N ++G IP   G++   ++L                  +P +I S+  ++ 
Sbjct:   431 --QRLELAGNRLSGGIP---GDISDSVSL-----SFIDFSRNQIRSSLPSTILSIHNLQA 480

Query:   516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575
              ++++N +SGE+P   ++C  + +LDL  N L+G IP+ I  S   L  L LR+N+  G 
Sbjct:   481 FLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIA-SCEKLVSLNLRNNNLTGE 539

Query:   576 IPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
             IP ++  +SAL +LDLS+N+L G +P  +G   A+
Sbjct:   540 IPRQITTMSALAVLDLSNNSLTGVLPESIGTSPAL 574

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 166/493 (33%), Positives = 235/493 (47%)

Query:   131 NFKVLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXF 190
             + K LDLSNN    ++P  LF +             +G +                    
Sbjct:   361 SLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNN- 419

Query:   191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
             LEG+L + +  L  L+ L L  N+FSGE+   I       N +SL  +++  N   G +P
Sbjct:   420 LEGKLPKEISALRKLEVLFLYENRFSGEIPQEIG------NCTSLKMIDMFGNHFEGEIP 473

Query:   251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
              S+G LK L  L L  N  +G +P SLGN   L  L L  NQ++G  P SFG L  +  L
Sbjct:   474 PSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQL 533

Query:   311 ELSDNQWEGFITDA--HLRNLT--SLEELSLIKT------SNSSLSFNIS---F-DWIP- 355
              L +N  +G + D+   LRNLT  +L    L  T      S+S LSF+++   F D IP 
Sbjct:   534 MLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPL 593

Query:   356 ----PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT--LD 409
                    L  L +   QL  K P  L    EL+ L ++S +++ T+P   LQL L   L 
Sbjct:   594 ELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP---LQLVLCKKLT 650

Query:   410 ELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
              +D+  N LSG IP  L      G + LSSN+F   +P    N TKL +  LD   NS+N
Sbjct:   651 HIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD--GNSLN 708

Query:   469 GSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
             GSIPQ +GNL  L  L +              G +P+++G L  +  L LS N L+GEIP
Sbjct:   709 GSIPQEIGNLGALNVLNLDKNQFS--------GSLPQAMGKLSKLYELRLSRNSLTGEIP 760

Query:   529 PSLKNCS-LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALH 587
               +     L  +LDL  N  +G+IP+ IG ++  L  L L  N   G +P  +  + +L 
Sbjct:   761 VEIGQLQDLQSALDLSYNNFTGDIPSTIG-TLSKLETLDLSHNQLTGEVPGSVGDMKSLG 819

Query:   588 ILDLSHNNLLGPI 600
              L++S NNL G +
Sbjct:   820 YLNVSFNNLGGKL 832

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 2.8e-46, P = 2.8e-46
 Identities = 155/492 (31%), Positives = 244/492 (49%)

Query:   131 NFKVLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXXF 190
             + K+LDLSNN     +P  LF +             +G +                    
Sbjct:   362 SLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNN- 420

Query:   191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
             LEG++ + +G L  L+ + L  N+FSGE+        E  N + L  ++   N+L+G +P
Sbjct:   421 LEGKVPKEIGFLGKLEIMYLYENRFSGEMP------VEIGNCTRLQEIDWYGNRLSGEIP 474

Query:   251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
              S+G LK+L  L L  N  +G+IP SLGN   +  + L  NQ++G  P SFG L+A+ + 
Sbjct:   475 SSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELF 534

Query:   311 ELSDNQWEGFITDA--HLRNLTSLE--------ELSLIKTSNSSLSFNIS---FDWIPPF 357
              + +N  +G + D+  +L+NLT +          +S +  S+S LSF+++   F+   P 
Sbjct:   535 MIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPL 594

Query:   358 KL-RYLVIRYYQLGP-----KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDEL 411
             +L +   +   +LG      + P      +EL+ L ++  S+S  +P   L L   L  +
Sbjct:   595 ELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVE-LGLCKKLTHI 653

Query:   412 DVGGNHLSGRIPNTLVFRFP--GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING 469
             D+  N+LSG IP T + + P  G + LSSN+F G +P    +LT +    LD   NS+NG
Sbjct:   654 DLNNNYLSGVIP-TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLD--GNSLNG 710

Query:   470 SIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
             SIPQ +GNL+ L  L +              G +P +IG L  +  L LS N L+GEIP 
Sbjct:   711 SIPQEIGNLQALNALNLEENQLS--------GPLPSTIGKLSKLFELRLSRNALTGEIPV 762

Query:   530 SLKNCS-LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588
              +     L  +LDL  N  +G IP+ I  ++P L  L L  N   G +P ++  + +L  
Sbjct:   763 EIGQLQDLQSALDLSYNNFTGRIPSTIS-TLPKLESLDLSHNQLVGEVPGQIGDMKSLGY 821

Query:   589 LDLSHNNLLGPI 600
             L+LS+NNL G +
Sbjct:   822 LNLSYNNLEGKL 833

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	611
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-71
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  248 bits (634), Expect = 1e-71
 Identities = 203/585 (34%), Positives = 293/585 (50%), Gaps = 52/585 (8%)

Query: 43  EREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNN--RTGSIIMLNLN-------NP 92
           E E LL FK ++ DP   LS+W    D C W+G+ CNN  R  SI +   N         
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 93  FRDSFDSYEDDAVHELRGKISPSLLQL-KDLEYLDLSLNNF------------KVLDLSN 139
           FR  +    + + ++L G I   +      L YL+LS NNF            + LDLSN
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSN 149

Query: 140 NGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL 199
           N  +  +P+ + + ++L  LDL  N L G IP+  ++L SL+ L L+ N  + GQ+ R L
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPREL 208

Query: 200 GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL 259
           G + +L+ + L  N  SGE+   I GL+      SL  L+L YN LTG +P SLG LKNL
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLT------SLNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 260 RYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319
           +YL L+ N   G IPPS+ +L  L  L L+ N ++G+ PE   QL  + +L L  N + G
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Query: 320 FITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRN 379
            I  A    LTSL  L +++  ++  S  I  +      L  L +    L  + P  L +
Sbjct: 323 KIPVA----LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 380 QTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSS 438
              L  L+L S S+   +P   L    +L  + +  N  SG +P+          +D+S+
Sbjct: 379 SGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Query: 439 NRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG--NLKQLLTLVISNNNLSDMTN 496
           N  +G I     ++  L +  L ++ N   G +P S G   L+ L           D++ 
Sbjct: 438 NNLQGRINSRKWDMPSLQM--LSLARNKFFGGLPDSFGSKRLENL-----------DLSR 484

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
           N FSG +P  +GSL  +  L LS N LSGEIP  L +C  + SLDL  NQLSG IPA   
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
           E MP LS L L  N  +G IP  L  + +L  +++SHN+L G +P
Sbjct: 545 E-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (316), Expect = 6e-30
 Identities = 104/325 (32%), Positives = 151/325 (46%), Gaps = 52/325 (16%)

Query: 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFD-WIPPFKLRYLV 363
           S +  ++LS     G I+ A  R    L  +  I  SN+ LS  I  D +     LRYL 
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFR----LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 364 IRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
                                   L++ + + ++P   +     L+ LD+  N LSG IP
Sbjct: 125 ------------------------LSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIP 157

Query: 424 NTL-VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLL 482
           N +  F     +DL  N   G IP   +NLT L    L ++ N + G IP+ +G +K L 
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF--LTLASNQLVGQIPRELGQMKSLK 215

Query: 483 TLVISNNNLS----------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE 526
            + +  NNLS                D+  NN +G IP S+G+L  +++L L  N LSG 
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
           IPPS+ +   + SLDL +N LSG IP  + + + +L IL L SN+F G IP  L  L  L
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRL 334

Query: 587 HILDLSHNNLLGPIPYCVGDFSAMT 611
            +L L  N   G IP  +G  + +T
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLT 359

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.1 bits (208), Expect = 7e-17
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 22/183 (12%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNI 153
             G++     +L  + +LD+S NN               ++L L+ N F   LP   F  
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGS 474

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
             L +LDLS N   G +P    SL+ L  L LS N  L G++   L +   L +L LS N
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDELSSCKKLVSLDLSHN 533

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
           Q SG++       SE      L++L+L  NQL+G +P +LG +++L  + + +N   GS+
Sbjct: 534 QLSGQIPA---SFSEM---PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 274 PPS 276
           P +
Sbjct: 588 PST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 8e-12
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575
           L L N  L G IP  +     + S++L  N + GNIP  +G S+ SL +L L  N FNG+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 576 IPSELCKLSALHILDLSHNNLLGPIPYCVG 605
           IP  L +L++L IL+L+ N+L G +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 12/98 (12%)

Query: 222 FIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281
           FIDGL             L    L G +P  +  L++L+ + L  NS  G+IPPSLG++T
Sbjct: 419 FIDGLG------------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT 466

Query: 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319
            LE L L+ N  NG  PES GQL+++R+L L+ N   G
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 36/137 (26%)

Query: 142 FNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGT 201
           F+ST   W  +      L L +  L+G IP+  S L  LQ ++LSGNS + G +  +LG+
Sbjct: 411 FDSTKGKWFID-----GLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGS 464

Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
           + +L+ L LS                              YN   G++P SLG L +LR 
Sbjct: 465 ITSLEVLDLS------------------------------YNSFNGSIPESLGQLTSLRI 494

Query: 262 LELWYNSFLGSIPPSLG 278
           L L  NS  G +P +LG
Sbjct: 495 LNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 21/143 (14%)

Query: 395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPIPLWSSNLT 453
            T   WF+      D L +    L G IPN +   R   S++LS N   G IP    ++T
Sbjct: 413 STKGKWFI------DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT 466

Query: 454 KLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLT- 512
            L +  LD+S+NS NGSIP+S+G L  L  L ++ N+L        SG +P ++G  L  
Sbjct: 467 SLEV--LDLSYNSFNGSIPESLGQLTSLRILNLNGNSL--------SGRVPAALGGRLLH 516

Query: 513 -IRFLVLSNNHLSGEIPPSLKNC 534
              F    N  L G   P L+ C
Sbjct: 517 RASFNFTDNAGLCG--IPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 4e-10
 Identities = 32/68 (47%), Positives = 42/68 (61%)

Query: 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
           L  + L  N + GN+P SLG + +L  L+L YNSF GSIP SLG LT L  L L  N ++
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 295 GKFPESFG 302
           G+ P + G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509
           S   K ++  L +    + G IP  +  L+ L ++     NLS    N+  G IP S+GS
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSI-----NLS---GNSIRGNIPPSLGS 464

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
           + ++  L LS N  +G IP SL   + +  L+L  N LSG +PA +G          L  
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG-------RLLHR 517

Query: 570 NHFNGTIPSELCKLSALH 587
             FN T  + LC +  L 
Sbjct: 518 ASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 35/166 (21%)

Query: 43  EREALLQFKQNLTDPSGRLSSWVGEDCCS----WRGVGC--NNRTGSIIM--LNLNNPFR 94
           E  AL   K +L  P  R   W G+ C      W G  C  ++  G   +  L L+N   
Sbjct: 373 EVSALQTLKSSLGLPL-RFG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--- 427

Query: 95  DSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNIT 154
                        LRG I   + +L+ L+    S+N      LS N     +P  L +IT
Sbjct: 428 -----------QGLRGFIPNDISKLRHLQ----SIN------LSGNSIRGNIPPSLGSIT 466

Query: 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG 200
           +L  LDLS N   G IP+    L SL++L+L+GN  L G++   LG
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 18/246 (7%)

Query: 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP 171
           +SPS +   D     L+L     LDL+ N   S +   L  +TNL SLDL +N++    P
Sbjct: 75  LSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPP 133

Query: 172 DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
                 ++L+ LDLS N      L   L  L NL+ L LS N  S       D      N
Sbjct: 134 LIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-------DLPKLLSN 184

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
            S+L  L+L  N+++ +LP  +  L  L  L+L  NS +  +  SL NL  L  L L++N
Sbjct: 185 LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH-LRNLTSLEELSLIKTSNSSLSFNIS 350
           ++    PES G LS +  L+LS+NQ    I+    L +LT+L EL L   S S+    I+
Sbjct: 243 KLE-DLPESIGNLSNLETLDLSNNQ----ISSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 351 FDWIPP 356
              +  
Sbjct: 298 LLLLLL 303

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 43 EREALLQFKQNLT-DPSGRLSSWV--GEDCCSWRGVGCN 78
          +R+ALL FK +L  DPSG LSSW     D CSW GV C+
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 125 LDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD 184
           + L  +N K LDLS+N    +LP  L N+ NL +LDLS NDL  D+P   S+L++L  LD
Sbjct: 135 IGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192

Query: 185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ 244
           LSGN      L   +  L  L+ L LS N     + + +  LS   N S L   EL  N+
Sbjct: 193 LSGNKIS--DLPPEIELLSALEELDLSNN----SIIELLSSLSNLKNLSGL---ELSNNK 243

Query: 245 LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL 304
           L  +LP S+G L NL  L+L  N    S   SLG+LT L EL L+ N ++   P     L
Sbjct: 244 LE-DLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348
             + +L       +  +       L +   LS  +TS+      
Sbjct: 301 LLLELLLNLLLTLK-ALELKLNSILLNNNILSNGETSSPEALSI 343

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 27/58 (46%), Positives = 32/58 (55%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           K LDLSNN            + NL  LDLS N+L    P+ FS L SL+ LDLSGN+ 
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
           L L  LD+  N L   I   L      S+DL +N     IP     L    L++LD+S N
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKS-NLKELDLSDN 150

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSD---------------MTNNNFSGEIPESIGSL 510
            I  S+P  + NL  L  L +S N+LSD               ++ N  S ++P  I  L
Sbjct: 151 KI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL 208

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             +  L LSNN +  E+  SL N   +  L+L  N+L  ++P  IG  + +L  L L +N
Sbjct: 209 SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN-LSNLETLDLSNN 265

Query: 571 HFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
               +  S L  L+ L  LDLS N+L   +P
Sbjct: 266 --QISSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 271 GSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
           G IP  +  L  L+ + L+ N + G  P S G ++++ VL+LS N + G I ++ L  LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLT 490

Query: 331 SLEELSL 337
           SL  L+L
Sbjct: 491 SLRILNL 497

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 57/214 (26%), Positives = 81/214 (37%), Gaps = 27/214 (12%)

Query: 156 LLSLDLSSNDLQGD------IPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQT 207
           L  L LS N+          +  G +    LQ LDLS N+          +L    +LQ 
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112

Query: 208 LKLSLNQFSGEVSDFI-DGLSECINSSSLARLELGYNQLTGNLPISLG----YLKNLRYL 262
           LKL+ N         +  GL +     +L +L LG N+L G    +L       ++L+ L
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDL--PPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 263 ELWYNSFLG----SIPPSLGNLTFLEELYLTSNQMN----GKFPESFGQLSAIRVLELSD 314
            L  N        ++   L     LE L L +N +         E+   L ++ VL L D
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348
           N     +TDA    L S      I     SLS N
Sbjct: 231 NN----LTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 536 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN 595
            +D L L    L G IP  I + +  L  + L  N   G IP  L  +++L +LDLS+N+
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 596 LLGPIPYCVGDFSAM 610
             G IP  +G  +++
Sbjct: 478 FNGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 20/254 (7%)

Query: 279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI 338
           +L+ L  L L S         S   L+ + +  L  N        + L  LT+L  L L 
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124

Query: 339 KTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLP 398
             + + +   I         L+ L +   ++    P+ LRN   L  L L+   +SD   
Sbjct: 125 NNNITDIPPLIGL---LKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPK 180

Query: 399 SWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLR 458
                 NL    LD+ GN +S   P   +      +DLS+N     +    SNL  L   
Sbjct: 181 LLSNLSNLN--NLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--S 235

Query: 459 DLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL 518
            L++S N +   +P+S+GNL  L TL +SNN +S             S+GSL  +R L L
Sbjct: 236 GLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS----------ISSLGSLTNLRELDL 284

Query: 519 SNNHLSGEIPPSLK 532
           S N LS  +P    
Sbjct: 285 SGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 258 NLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           NL+ L+L  N  L  IP  +   L  L+ L L+ N +    PE+F  L ++R L+LS N 
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	611
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.6
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
PLN03150	623	hypothetical protein; Provisional	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG4341	483	consensus F-box protein containing LRR [General fu	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.94
KOG4341	483	consensus F-box protein containing LRR [General fu	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG4308	478	consensus LRR-containing protein [Function unknown	95.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.4
KOG4308	478	consensus LRR-containing protein [Function unknown	93.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.26
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.87
smart00370	26	LRR Leucine-rich repeats, outliers.	91.87
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.66
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.69
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.64
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.19
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.56
smart00370	26	LRR Leucine-rich repeats, outliers.	82.56

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-66  Score=602.40  Aligned_cols=532  Identities=37%  Similarity=0.590  Sum_probs=329.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccC
Q 047139           40 KEVEREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQ  118 (611)
Q Consensus        40 ~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  118 (611)
                      .++|++||++||+++.+|.+.+.+| .+.+||.|.||+|++ .++|+.|++++              +.+.|.++..+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~--------------~~i~~~~~~~~~~   91 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG--------------KNISGKISSAIFR   91 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC--------------CCccccCChHHhC
Confidence            4589999999999998888888999 577899999999985 57999999998              4444444555555


Q ss_pred             CCCCCEEECCCCC---------------CCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 047139          119 LKDLEYLDLSLNN---------------FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLL  183 (611)
Q Consensus       119 l~~L~~L~ls~n~---------------l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  183 (611)
                      +++|++|++++|+               +++|+|++|.+++.+|.  +.+++|++|++++|.+++.+|..++++++|++|
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            5555555555442               22445555555544443  234555555555555554555555555555555


Q ss_pred             EccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEE
Q 047139          184 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE  263 (611)
Q Consensus       184 ~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  263 (611)
                      ++++|. +.+.+|..++++++|++|++++|.+.+.+|..+..++      +|++|++++|++++.+|..++++++|++|+
T Consensus       170 ~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        170 DLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK------SLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             ECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC------CccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            555554 3444455555555555555555555555555444444      555555555555555555555555555555


Q ss_pred             ccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC
Q 047139          264 LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS  343 (611)
Q Consensus       264 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~  343 (611)
                      +++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+.++++|+.|++++|   
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n---  318 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSN---  318 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCC---
Confidence            555555545555555555555555555555544555555555555555555555444443 4445555555555442   


Q ss_pred             CceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139          344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP  423 (611)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~  423 (611)
                      .+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|++.+.+|.++... ++|+.+++++|++.+.+|
T Consensus       319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCC
Confidence            2222333333444455555555555555555555555555555555555555555444432 345555555555554444


Q ss_pred             cccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC----------
Q 047139          424 NTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------  492 (611)
Q Consensus       424 ~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~----------  492 (611)
                      ..+... .++.+++++|++++.+|..+..+..+  +.+++++|.+++.+|..+..+++|+.|++++|++.          
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~  475 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV--YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK  475 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHhcCCCC--CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc
Confidence            444332 44555555555554444444433333  33444555555444444444555555555544432          


Q ss_pred             -----CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEEC
Q 047139          493 -----DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL  567 (611)
Q Consensus       493 -----~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~l  567 (611)
                           +++.|.+++.+|..+.++++|+.|++++|++.+.+|..+.++++|++|++++|.++|.+|..+.. +++|++|++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L  554 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDL  554 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC-cccCCEEEC
Confidence                 34455667788988999999999999999999999999999999999999999999999998876 999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139          568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC  603 (611)
Q Consensus       568 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~  603 (611)
                      ++|+++|.+|..+.++++|+.+++++|+++|.+|..
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            999999999999999999999999999999999964

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.6e-55  Score=504.77  Aligned_cols=474  Identities=34%  Similarity=0.494  Sum_probs=430.7

Q ss_pred             CCCCEEECCCC--------------CCCeEEccCCcCccCCCcccc-CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 047139          120 KDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD  184 (611)
Q Consensus       120 ~~L~~L~ls~n--------------~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  184 (611)
                      .+++.|++++|              ++++|+|++|.+++.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            45777887776              356899999999999998765 999999999999999988885  5689999999


Q ss_pred             ccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEc
Q 047139          185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL  264 (611)
Q Consensus       185 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  264 (611)
                      +++|. +.+.+|..++++++|++|++++|.+.+..|..+..++      +|++|++++|.+++.+|..++++++|++|++
T Consensus       147 Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        147 LSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            99999 6778999999999999999999999999999998888      9999999999999999999999999999999


Q ss_pred             cCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCC
Q 047139          265 WYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS  344 (611)
Q Consensus       265 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~  344 (611)
                      ++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|   .
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n---~  295 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDN---S  295 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCC---e
Confidence            99999999999999999999999999999999999999999999999999999988887 7889999999999984   4


Q ss_pred             ceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCc
Q 047139          345 LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPN  424 (611)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~  424 (611)
                      +.+..+..+..+.+|+.|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+... ++|+.|++++|++.+.+|.
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCCh
Confidence            555666667778899999999999999999999999999999999999999999988764 7999999999999999998


Q ss_pred             ccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC-----------
Q 047139          425 TLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS-----------  492 (611)
Q Consensus       425 ~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-----------  492 (611)
                      .+... .++.+++++|.+.+.+|..+..+..|  ++|++++|++++.+|..+..+++|+.|++++|+++           
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L--~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSL--RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCC--CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence            87754 89999999999999999887776655  77888999999999999999999999999999876           


Q ss_pred             -----CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEEC
Q 047139          493 -----DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL  567 (611)
Q Consensus       493 -----~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~l  567 (611)
                           +++.|.+.|.+|..++ .++|+.|++++|++++.+|..+.++++|+.|++++|++++.+|..+.. +++|++|++
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L  530 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDL  530 (968)
T ss_pred             CCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC-ccCCCEEEC
Confidence                 5677888888887664 589999999999999999999999999999999999999999998876 999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139          568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT  611 (611)
Q Consensus       568 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~  611 (611)
                      ++|+++|.+|..+..+++|++||+++|+++|.+|..++++++|+
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence            99999999999999999999999999999999999998887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.8e-40  Score=311.86  Aligned_cols=439  Identities=30%  Similarity=0.410  Sum_probs=338.7

Q ss_pred             ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcc
Q 047139          114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEG  193 (611)
Q Consensus       114 ~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~  193 (611)
                      +.+.++..+..|+++.|++          + .+|++++.+..++.++.++|+++ .+|..++.+.+|+.++.++|.+  .
T Consensus        62 ~dl~nL~~l~vl~~~~n~l----------~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~  127 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKL----------S-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--K  127 (565)
T ss_pred             HhhhcccceeEEEeccchh----------h-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--e
Confidence            3444555555555555544          3 67778888889999999999888 7888888899999999998885  4


Q ss_pred             cccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccC
Q 047139          194 QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI  273 (611)
Q Consensus       194 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  273 (611)
                      .+|+.++.+..|+.++..+|+++.. |+.+..+.      +|..+++.+|++... |+..-+++.|+++|...|-+. .+
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~------~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLS------KLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccccC-chHHHHHH------HHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cC
Confidence            5788888888899999888888754 44555555      788888888888844 444444888888888888765 78


Q ss_pred             CCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCC
Q 047139          274 PPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDW  353 (611)
Q Consensus       274 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  353 (611)
                      |+.++.+.+|+-|++..|++. .+| +|.+++.|++++++.|++.. +|....++++++..||+..|+.    .+.|.+.
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNkl----ke~Pde~  271 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKL----KEVPDEI  271 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccc----ccCchHH
Confidence            888888888999999988887 566 68888888999988888764 6777888888888999888554    3344455


Q ss_pred             CCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccc-------------------------------------c
Q 047139          354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD-------------------------------------T  396 (611)
Q Consensus       354 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-------------------------------------~  396 (611)
                      .-+.+|+.||+++|.++ .+|..++++ +|+.|.+.+|.+..                                     +
T Consensus       272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            56677888888888876 467778888 88888888886531                                     0


Q ss_pred             cchhHH---hcCCCCCEEEccCcccccccCcccccC----CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec
Q 047139          397 LPSWFL---QLNLTLDELDVGGNHLSGRIPNTLVFR----FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING  469 (611)
Q Consensus       397 ~p~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~~----~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~  469 (611)
                      .|.+.+   ....+.+.|++++-+++ .+|+.....    -...++++.|++. .+|..+..++.+ .+.+.+++|.++ 
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkel-vT~l~lsnn~is-  425 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKEL-VTDLVLSNNKIS-  425 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHH-HHHHHhhcCccc-
Confidence            111110   11235678888888887 666665433    3778899999987 456555444433 244566777775 


Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      .+|..++.+++|+.|++++|.+.         .+|..++.+..|+.||+|.|++. .+|.++..+..++.+-.++|++..
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln---------~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN---------DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh---------hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence            78888999999999999988765         78888888999999999999998 889999999999999999999984


Q ss_pred             cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139          550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY  602 (611)
Q Consensus       550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~  602 (611)
                      .-|+.+.. +.+|.+||+.+|.+. .+|+.++++++|+.|++++|+|.  .|.
T Consensus       496 vd~~~l~n-m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  496 VDPSGLKN-MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             cChHHhhh-hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            44444765 999999999999999 89999999999999999999998  454

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=299.25  Aligned_cols=391  Identities=25%  Similarity=0.304  Sum_probs=293.8

Q ss_pred             CEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCC
Q 047139          123 EYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTL  202 (611)
Q Consensus       123 ~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  202 (611)
                      +.||.+.+.+..++  ...+.|.+|      +.-+.||+++|+++...+..|.++++|+.+++.+|.+  ..+|...+-.
T Consensus        55 ~lldcs~~~lea~~--~~~l~g~lp------~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~s  124 (873)
T KOG4194|consen   55 RLLDCSDRELEAID--KSRLKGFLP------SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHES  124 (873)
T ss_pred             eeeecCcccccccc--ccccCCcCc------cceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccc
Confidence            44666666655332  123344444      3456799999999988888999999999999999985  4688877777


Q ss_pred             CCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCccc
Q 047139          203 CNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTF  282 (611)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  282 (611)
                      .+|+.|+|.+|.|+....+.++.++      .|+.||||.|.++..--.+|..-.++++|+|++|.++..-...|..+.+
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            7899999999999998888898888      9999999999999665567777789999999999999877778999999


Q ss_pred             CceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEE
Q 047139          283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL  362 (611)
Q Consensus       283 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  362 (611)
                      |.+|.|+.|.++...+..|.++++|+.|+|..|.+.- +....|.++++|+.|.+..|....+..               
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~D---------------  262 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDD---------------  262 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccC---------------
Confidence            9999999999997666778889999999999998863 323478888888888888855433322               


Q ss_pred             EecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCccc
Q 047139          363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE  442 (611)
Q Consensus       363 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~  442 (611)
                                  ..|..+.++++|+++.|+++..--.|+++. ++|+.|++|+|.|...-++.+.++             
T Consensus       263 ------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~Wsft-------------  316 (873)
T KOG4194|consen  263 ------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFT-------------  316 (873)
T ss_pred             ------------cceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhhc-------------
Confidence                        223444555555555555544444444442 345555555555443222222221             


Q ss_pred             ccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc
Q 047139          443 GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH  522 (611)
Q Consensus       443 ~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~  522 (611)
                                +.  |++|+|++|+++..-+..|.-+..|++|.|++|.+..+..+.|.|        +++|++|||++|.
T Consensus       317 ----------qk--L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------lssL~~LdLr~N~  376 (873)
T KOG4194|consen  317 ----------QK--LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------LSSLHKLDLRSNE  376 (873)
T ss_pred             ----------cc--ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH--------hhhhhhhcCcCCe
Confidence                      11  133444666665556667777888899999999998888888888        8899999999999


Q ss_pred             ccccCc---ccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccC
Q 047139          523 LSGEIP---PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH  593 (611)
Q Consensus       523 l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  593 (611)
                      +++.+.   ..|..+++|+.|++.+|++. .||...+.+++.|++|||.+|.|..+-|..|..+ .|++|-+..
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            987655   35788999999999999998 8888777779999999999999998888899888 888777653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=285.06  Aligned_cols=380  Identities=25%  Similarity=0.281  Sum_probs=256.3

Q ss_pred             CEEEccCCCCCCCCCccCCCC--CCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139          157 LSLDLSSNDLQGDIPDGFSSL--NSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS  234 (611)
Q Consensus       157 ~~L~L~~n~~~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~  234 (611)
                      +.||.+++.+....-..+.+.  ..-+.||+++|. +...-+..|.++++|+++++..|.++ .+|.......      +
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg------h  126 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG------H  126 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhh-hccccccccc------c
Confidence            456777766553222222221  123457777776 45555566667777777777766665 3444333333      5


Q ss_pred             CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139          235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD  314 (611)
Q Consensus       235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  314 (611)
                      |+.|+|.+|.|+..-.+.+..++.|+.|||+.|.++..--..|..-.++++|+|++|.++......|..+.+|..|.|++
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            66666666666655555566666666666666666533333455545666666666666655555566666666666666


Q ss_pred             CccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139          315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS  394 (611)
Q Consensus       315 n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  394 (611)
                      |+++. +|...|+++++|+.|++..|+.                           .-.--..|.+++             
T Consensus       207 Nritt-Lp~r~Fk~L~~L~~LdLnrN~i---------------------------rive~ltFqgL~-------------  245 (873)
T KOG4194|consen  207 NRITT-LPQRSFKRLPKLESLDLNRNRI---------------------------RIVEGLTFQGLP-------------  245 (873)
T ss_pred             Ccccc-cCHHHhhhcchhhhhhccccce---------------------------eeehhhhhcCch-------------
Confidence            66654 4444566666666666655332                           100011233444             


Q ss_pred             cccchhHHhcCCCCCEEEccCcccccccCcccc-cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139          395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ  473 (611)
Q Consensus       395 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~  473 (611)
                                  +|+.+.+..|++..--...+. ...++.++++.|+++..-..|+-.++.|  +.|++|+|.|...-++
T Consensus       246 ------------Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L--~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  246 ------------SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL--EQLDLSYNAIQRIHID  311 (873)
T ss_pred             ------------hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh--hhhccchhhhheeecc
Confidence                        455555555554422222222 2367777777777776666677778877  7899999999988899


Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      .+..+++|++|+|+.|+|+.+....|.+        ++.|++|+|++|.+...-...|..+.+|++|||++|.+++.|-+
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHH--------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            9999999999999999999877666665        99999999999999977778899999999999999999877654


Q ss_pred             --HHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccccc
Q 047139          554 --WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF  607 (611)
Q Consensus       554 --~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~  607 (611)
                        ..+..+++|+.|++.+|++..+--..|..+..|+.|||.+|.+...=|..|..+
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence              344569999999999999995545689999999999999999987777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.9e-38  Score=297.45  Aligned_cols=454  Identities=26%  Similarity=0.327  Sum_probs=339.1

Q ss_pred             CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      .-..++.+++++|.++           .+.+.+.++..|.+|++++|+++ ..|.+++.+..++.++.++|.+  ..+|+
T Consensus        43 ~qv~l~~lils~N~l~-----------~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~  108 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLE-----------VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPE  108 (565)
T ss_pred             hhcchhhhhhccCchh-----------hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccH
Confidence            3445667777777665           34556889999999999999999 8899999999999999999985  56999


Q ss_pred             cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL  277 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  277 (611)
                      .++.+.+|++++.++|.+... ++.++.+-      .++.++..+|++. ..|..+..+.++..+++.+|++... |+..
T Consensus       109 ~i~s~~~l~~l~~s~n~~~el-~~~i~~~~------~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~  179 (565)
T KOG0472|consen  109 QIGSLISLVKLDCSSNELKEL-PDSIGRLL------DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENH  179 (565)
T ss_pred             HHhhhhhhhhhhccccceeec-CchHHHHh------hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHH
Confidence            999999999999999998854 44555554      8999999999999 8899999999999999999999854 4444


Q ss_pred             cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCc
Q 047139          278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF  357 (611)
Q Consensus       278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  357 (611)
                      -+++.|+.||...|.++ .+|+.++.+.+|..|+|..|++.. .|  .|.+|..|++++++.|+...+..+.   ...+.
T Consensus       180 i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~  252 (565)
T KOG0472|consen  180 IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIEMLPAEH---LKHLN  252 (565)
T ss_pred             HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHHhhHHHH---hcccc
Confidence            45999999999998886 799999999999999999999864 56  5899999999999986553333222   23567


Q ss_pred             ceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC---CCceE
Q 047139          358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR---FPGSV  434 (611)
Q Consensus       358 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~l~~l  434 (611)
                      ++..||++.|++. +.|+.+.-+.+|++||+++|.++ .+|..++..  .|+.|-+.+|.+...-.+.+...   -++++
T Consensus       253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             cceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            8899999999876 68888888999999999999998 466666665  78888888887642111000000   01111


Q ss_pred             E-------ccCC----cccccCCCC-CCCcc-eeecCcccCCCCeeecccccchhccCC---CCeEECcCCCCC------
Q 047139          435 D-------LSSN----RFEGPIPLW-SSNLT-KLYLRDLDISFNSINGSIPQSVGNLKQ---LLTLVISNNNLS------  492 (611)
Q Consensus       435 ~-------ls~n----~~~~~~p~~-~~~l~-~L~l~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~L~~n~i~------  492 (611)
                      .       ++.-    .-.+..|.+ +.... ....+.|++++-+++ .+|.....-.+   .+.++++.|++.      
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence            0       0000    000111111 11100 001133444555554 33433322222   455555555554      


Q ss_pred             ----------CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCC
Q 047139          493 ----------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL  562 (611)
Q Consensus       493 ----------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L  562 (611)
                                .++. +..+.+|..++.+++|..|+|++|.+. .+|..++.+..|+.||++.|+|. .+|..+.. +..+
T Consensus       408 ~~lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~l  483 (565)
T KOG0472|consen  408 VELKELVTDLVLSN-NKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTL  483 (565)
T ss_pred             HHHHHHHHHHHhhc-CccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHH
Confidence                      1222 223367888899999999999999988 88999999999999999999998 89999887 7888


Q ss_pred             cEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139          563 SILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT  611 (611)
Q Consensus       563 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~  611 (611)
                      +.+-.++|++...-|+.+.++.+|.+||+.+|.+ ..||+.++++++|+
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLR  531 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhcccccee
Confidence            8888888999966666699999999999999998 48999999999875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=5.7e-35  Score=291.98  Aligned_cols=386  Identities=28%  Similarity=0.432  Sum_probs=242.2

Q ss_pred             ccce-eeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 047139          106 HELR-GKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD  184 (611)
Q Consensus       106 ~~l~-~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  184 (611)
                      +.++ +.+|..+..++.++-|.|...++.           .+|+.++.+.+|++|.+++|++. .+-..+..++.||.+.
T Consensus        17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-----------~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen   17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-----------QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             CcCCCCcCchhHHHhhheeEEEechhhhh-----------hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            4444 345555555555555555544443           45555555555555555555554 3333455555555555


Q ss_pred             ccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEc
Q 047139          185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL  264 (611)
Q Consensus       185 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  264 (611)
                      ++.|++.+..+|..+.++..|..||+++|++                              . ..|..+...+++-.|+|
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL------------------------------~-EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQL------------------------------R-EVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhh------------------------------h-hcchhhhhhcCcEEEEc
Confidence            5555544444555555555555555555554                              4 44555555555555555


Q ss_pred             cCCcccccCCCC-ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC
Q 047139          265 WYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS  343 (611)
Q Consensus       265 ~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~  343 (611)
                      ++|++. .+|.. +.+++.|-.|||++|.+. .+|+.+..+..|+.|+|++|.+.-.-- ..+-.+++|+.|.+++.+- 
T Consensus       134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqR-  209 (1255)
T KOG0444|consen  134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQR-  209 (1255)
T ss_pred             ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccc-
Confidence            555554 33432 345555555566655554 444455555566666666665432211 1222333444444444211 


Q ss_pred             CceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139          344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP  423 (611)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~  423 (611)
                                               -...+|..+..+.+|..+|++.|.+. .+|+.+... ++|+.|++|+|+++..-.
T Consensus       210 -------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  210 -------------------------TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             -------------------------hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeec
Confidence                                     11246666777778888888888776 677777764 688888888888772111


Q ss_pred             cccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccC
Q 047139          424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI  503 (611)
Q Consensus       424 ~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~i  503 (611)
                       ...                    ...     .+++|++|.|+++ .+|.+++.+++|+.|.+.+|+++      |.| |
T Consensus       263 -~~~--------------------~W~-----~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------FeG-i  308 (1255)
T KOG0444|consen  263 -TEG--------------------EWE-----NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FEG-I  308 (1255)
T ss_pred             -cHH--------------------HHh-----hhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------ccC-C
Confidence             000                    011     3366666999998 89999999999999999999875      665 9


Q ss_pred             cccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-C
Q 047139          504 PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-K  582 (611)
Q Consensus       504 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-~  582 (611)
                      |..|+.+.+|+++..++|.+. .+|+.+..|..|+.|.|+.|++. ++|+.+.- ++.|++||+..|+-- ..|+.-. .
T Consensus       309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl-L~~l~vLDlreNpnL-VMPPKP~da  384 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL-LPDLKVLDLRENPNL-VMPPKPNDA  384 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh-cCCcceeeccCCcCc-cCCCCcchh
Confidence            999999999999999999998 89999999999999999999998 89999986 999999999999866 3443222 2


Q ss_pred             CCCCCEeeccC---C--cCccCCCcc
Q 047139          583 LSALHILDLSH---N--NLLGPIPYC  603 (611)
Q Consensus       583 l~~L~~L~ls~---n--~l~g~iP~~  603 (611)
                      -++|+.-++..   +  ++.|..|..
T Consensus       385 ~~~lefYNIDFSLq~QlrlAG~~pas  410 (1255)
T KOG0444|consen  385 RKKLEFYNIDFSLQHQLRLAGQMPAS  410 (1255)
T ss_pred             hhcceeeecceehhhHHhhccCCccc
Confidence            23454433321   1  456777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.1e-33  Score=291.26  Aligned_cols=404  Identities=27%  Similarity=0.353  Sum_probs=306.2

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID  224 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  224 (611)
                      ..|..+..+++|+.|+++.|.|. ..|.+..++.+|++++|.+|+.  ...|.++..+++|++|++++|.+. .+|..+.
T Consensus        59 ~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~  134 (1081)
T KOG0618|consen   59 SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFG-PIPLVIE  134 (1081)
T ss_pred             cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccC-CCchhHH
Confidence            67777888888888888888887 6778888888888888888874  457888888888888888888875 5666666


Q ss_pred             cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCC
Q 047139          225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL  304 (611)
Q Consensus       225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  304 (611)
                      .++      .++.+..++|.....++    ... ++++++..|.+.+.++..+..++.  .|+|++|.+. .  ..+..+
T Consensus       135 ~lt------~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~  198 (1081)
T KOG0618|consen  135 VLT------AEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNL  198 (1081)
T ss_pred             hhh------HHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhc
Confidence            666      77778888883222222    222 778888888888888887777766  7888888876 2  236677


Q ss_pred             CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCC
Q 047139          305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELT  384 (611)
Q Consensus       305 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  384 (611)
                      .+|+.+....|++...     --.-++|+.|+...|...     ......-+.+|++++++.+.+. .+|+|+..+.+|+
T Consensus       199 ~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~-----~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLT-----TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLE  267 (1081)
T ss_pred             cchhhhhhhhcccceE-----EecCcchheeeeccCcce-----eeccccccccceeeecchhhhh-cchHHHHhcccce
Confidence            8888888888877542     223467888888885442     1112233568999999999987 4669999999999


Q ss_pred             EEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc-cCCCceEEccCCcccccCCCCCC-------------
Q 047139          385 TLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSS-------------  450 (611)
Q Consensus       385 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p~~~~-------------  450 (611)
                      .++...|+++ .+|..+... .+|+++++..|.+. .+|.... ...+++||+..|++....+..+.             
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             EecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence            9999999995 667666654 57888888888877 4444444 45788888888877633221111             


Q ss_pred             ----------CcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcc-cccCcCCCCEEECc
Q 047139          451 ----------NLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE-SIGSLLTIRFLVLS  519 (611)
Q Consensus       451 ----------~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~-~~~~l~~L~~L~Ls  519 (611)
                                .-..-.|+.|++.+|.++...-+.+.+.++|+.|+|++|++.         .+|. .+.++..|++|+||
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------SFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc---------cCCHHHHhchHHhHHHhcc
Confidence                      001112466888999999988888999999999999999887         4444 35678899999999


Q ss_pred             CCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139          520 NNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN  595 (611)
Q Consensus       520 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  595 (611)
                      +|+++ .+|.++.++..|++|..-+|++. ..| .+.+ +++|+++|+|.|+++...-..-...+.|++||+++|.
T Consensus       416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~-l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ-LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh-cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99999 88999999999999999999998 788 6766 9999999999999986544443445899999999996

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.5e-32  Score=273.22  Aligned_cols=368  Identities=25%  Similarity=0.356  Sum_probs=279.5

Q ss_pred             cCCCCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          151 FNITNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       151 ~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +-++..+-.|+++|.++ +..|.....+++++.|.|...++  ..+|+.++.+.+|++|.+++|++... -..+..++  
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp--   78 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLP--   78 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccch--
Confidence            34566788899999988 57888888889999998888874  56888888888899998888887632 23344444  


Q ss_pred             CCCCCCcEEEccCCCCC-ccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          230 INSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                          .|+.+++..|++. ..+|..+.++..|+.|||++|++. ..|..+...+++-+|+|++|++.......|.+++.|-
T Consensus        79 ----~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   79 ----RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             ----hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence                7888888888775 456777778888888888888877 6777777778888888888888743333456777788


Q ss_pred             EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139          309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL  388 (611)
Q Consensus       309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  388 (611)
                      .|||++|++.. .|+ ....+..|++|.+++|+.                           .-.--..+..+++|+.|.+
T Consensus       154 fLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL---------------------------~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  154 FLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPL---------------------------NHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             hhccccchhhh-cCH-HHHHHhhhhhhhcCCChh---------------------------hHHHHhcCccchhhhhhhc
Confidence            88888888765 444 466777777777776433                           1111122334567777888


Q ss_pred             cCcccc-cccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCee
Q 047139          389 NSASIS-DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI  467 (611)
Q Consensus       389 ~~n~l~-~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l  467 (611)
                      ++.+-+ ..+|..+-.+ .+|..+|+|.|.+. .+|                       ..+-.+..|  +.|+||+|.+
T Consensus       205 s~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vP-----------------------ecly~l~~L--rrLNLS~N~i  257 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVP-----------------------ECLYKLRNL--RRLNLSGNKI  257 (1255)
T ss_pred             ccccchhhcCCCchhhh-hhhhhccccccCCC-cch-----------------------HHHhhhhhh--heeccCcCce
Confidence            777544 4466666554 57777777777766 333                       333333333  5566688888


Q ss_pred             ecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCEEECCCCc
Q 047139          468 NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQ  546 (611)
Q Consensus       468 ~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~  546 (611)
                      + .+....+...+|++|+++.|+++         .+|..+..++.|+.|.+.+|+++ ..+|..++++..|+++..++|+
T Consensus       258 t-eL~~~~~~W~~lEtLNlSrNQLt---------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  258 T-ELNMTEGEWENLETLNLSRNQLT---------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             e-eeeccHHHHhhhhhhccccchhc---------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            7 45555677788999999999887         89999999999999999999987 4689999999999999999999


Q ss_pred             CcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139          547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       547 l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      +. -.|..+.. |..|+.|.|++|++. .+|+.+.-++.|.+||+..|+-.
T Consensus       328 LE-lVPEglcR-C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  328 LE-LVPEGLCR-CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cc-cCchhhhh-hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            98 89999998 999999999999999 89999999999999999999754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-31  Score=280.02  Aligned_cols=434  Identities=28%  Similarity=0.372  Sum_probs=334.2

Q ss_pred             eCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCC
Q 047139          112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL  191 (611)
Q Consensus       112 ~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~  191 (611)
                      +|..+..-.+++.|+++.|.+          ....-+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+ 
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~----------l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i-   80 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSL----------LSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI-   80 (1081)
T ss_pred             cchhhccHHHHHhhhcccccc----------ccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-
Confidence            455555545566666666543          2222234555666999999999988 7888999999999999999986 


Q ss_pred             cccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139          192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG  271 (611)
Q Consensus       192 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  271 (611)
                       ..+|.+..++.+|+++.|..|.+. ..|..+..+.      +|++|++++|++. .+|..+..+..++.+..++|....
T Consensus        81 -~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk------nl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   81 -RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK------NLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             -hhCchhhhhhhcchhheeccchhh-cCchhHHhhh------cccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence             568899999999999999999876 5677777777      9999999999998 889999999999999999993322


Q ss_pred             cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccC
Q 047139          272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF  351 (611)
Q Consensus       272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  351 (611)
                      .    ++... ++.+++..|.+.+.++..+..++.  .|+|++|.+..    ..+..+..|+.+....|+...+..    
T Consensus       152 ~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~~----  216 (1081)
T KOG0618|consen  152 R----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELEI----  216 (1081)
T ss_pred             h----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhhhhhhcccceEEe----
Confidence            2    33333 888899999999888888888777  89999999862    257888899999888866644332    


Q ss_pred             CCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc-cCC
Q 047139          352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRF  430 (611)
Q Consensus       352 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~  430 (611)
                         ..++++.|+.+.|.+....+.  ..-.+|++++++.|+++ .+|+|+... .+|+.++..+|+++ .+|..+. ...
T Consensus       217 ---~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  217 ---SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             ---cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhh
Confidence               245889999999988743322  12368999999999998 567888874 79999999999996 5555544 448


Q ss_pred             CceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhc-cCC-CCeEECcCCCCC----------------
Q 047139          431 PGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGN-LKQ-LLTLVISNNNLS----------------  492 (611)
Q Consensus       431 l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-l~~-L~~L~L~~n~i~----------------  492 (611)
                      ++.+++..|.+. .+|.....++.+  ++|+|..|++. ..|+.+-. ... |..|..+.|++.                
T Consensus       289 L~~l~~~~nel~-yip~~le~~~sL--~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L  364 (1081)
T KOG0618|consen  289 LVSLSAAYNELE-YIPPFLEGLKSL--RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL  364 (1081)
T ss_pred             HHHHHhhhhhhh-hCCCccccccee--eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence            889999999887 455555556655  66777888887 45543322 111 344444444443                


Q ss_pred             CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcC
Q 047139          493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF  572 (611)
Q Consensus       493 ~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l  572 (611)
                      .+.+|.|+...-+.+.+...|+.|+|++|++..-....+.++..|+.|+||+|+++ .+|..+.. ++.|++|..-+|++
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHTLRAHSNQL  442 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHHHhhcCCce
Confidence            34556666666667778999999999999998443457899999999999999999 89999987 99999999999999


Q ss_pred             cccCCccccCCCCCCEeeccCCcCc
Q 047139          573 NGTIPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       573 ~~~~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      . ..| ++..++.|+++|+|.|+++
T Consensus       443 ~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  443 L-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             e-ech-hhhhcCcceEEecccchhh
Confidence            9 788 8899999999999999987

>PLN03210 Resistant to P

Probab=99.91  E-value=4.4e-23  Score=240.41  Aligned_cols=346  Identities=22%  Similarity=0.238  Sum_probs=197.6

Q ss_pred             cCCCCCCCCEEEcccccC------CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139          198 NLGTLCNLQTLKLSLNQF------SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG  271 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l------~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  271 (611)
                      .|.++++|+.|.+..+..      ....|+.+..++     ++|+.|++.++.+. .+|..+ ...+|++|++.+|++. 
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcC-----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence            455666666666654432      222344444433     15666666666655 555555 3466666666666655 


Q ss_pred             cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccC
Q 047139          272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF  351 (611)
Q Consensus       272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  351 (611)
                      .+|..+..+++|++|+++++.....+|. +..+++|+.|++++|.....+|. .+.++++|+.|++++|.+  + ..++.
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~--L-~~Lp~  699 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCEN--L-EILPT  699 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCC--c-CccCC
Confidence            4555566666666666666554444543 55666666666666654445554 456666666666665432  0 11111


Q ss_pred             CCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCC
Q 047139          352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP  431 (611)
Q Consensus       352 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l  431 (611)
                      .. .+.+|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+  .+++|++|++.++... .+.        
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~-~l~--------  763 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSE-KLW--------  763 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchh-hcc--------
Confidence            11 2334444444444333333321   234455555555443 233322  1234444444332211 000        


Q ss_pred             ceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcC
Q 047139          432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLL  511 (611)
Q Consensus       432 ~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~  511 (611)
                             +.+....+.......  .|++|++++|...+.+|..++++++|+.|++++|...        +.+|..+ +++
T Consensus       764 -------~~~~~l~~~~~~~~~--sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L--------~~LP~~~-~L~  825 (1153)
T PLN03210        764 -------ERVQPLTPLMTMLSP--SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL--------ETLPTGI-NLE  825 (1153)
T ss_pred             -------ccccccchhhhhccc--cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc--------CeeCCCC-Ccc
Confidence                   000000000000011  2355666888877788888888888999988887421        1456555 578


Q ss_pred             CCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeec
Q 047139          512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDL  591 (611)
Q Consensus       512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  591 (611)
                      +|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++.. +++|++|++++|+--..+|..+..+++|+.+++
T Consensus       826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l  900 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF  900 (1153)
T ss_pred             ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence            8889999888655556543   367888899998887 78888875 888999999886555568888888888888888


Q ss_pred             cCCc
Q 047139          592 SHNN  595 (611)
Q Consensus       592 s~n~  595 (611)
                      ++|.
T Consensus       901 ~~C~  904 (1153)
T PLN03210        901 SDCG  904 (1153)
T ss_pred             CCCc
Confidence            8885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=8.1e-23  Score=238.23  Aligned_cols=349  Identities=21%  Similarity=0.279  Sum_probs=234.2

Q ss_pred             CccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCC-CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCC
Q 047139          113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNIT-NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL  191 (611)
Q Consensus       113 ~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~  191 (611)
                      +.+|..+++|++|.+..+....    .+.+...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|.+ 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~----~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l-  623 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQ----KKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL-  623 (1153)
T ss_pred             HHHHhcCccccEEEEecccccc----cccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc-
Confidence            3468889999999987664321    1233446777777764 6999999999887 778777 578999999999985 


Q ss_pred             cccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139          192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG  271 (611)
Q Consensus       192 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  271 (611)
                       ..++..+..+++|++|+++++.....+|. +..++      +|++|++++|.....+|..+..+++|++|++++|...+
T Consensus       624 -~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~------~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        624 -EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT------NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             -cccccccccCCCCCEEECCCCCCcCcCCc-cccCC------cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence             45788889999999999998875556664 44455      99999999998777899999999999999999987666


Q ss_pred             cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeec--
Q 047139          272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI--  349 (611)
Q Consensus       272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--  349 (611)
                      .+|..+ ++++|++|++++|...+.+|..   .++|+.|++++|.+.. +|. . ..+++|++|.+.++....+....  
T Consensus       696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPS-N-LRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccc-c-ccccccccccccccchhhccccccc
Confidence            888766 7899999999999766666643   4678999999998764 554 2 25788888888764331211111  


Q ss_pred             --cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc
Q 047139          350 --SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV  427 (611)
Q Consensus       350 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  427 (611)
                        +.....+++|+.|++++|.....+|.+++++++|+.|++++|...+.                         +|....
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-------------------------LP~~~~  823 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-------------------------LPTGIN  823 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-------------------------eCCCCC
Confidence              00011123455555555544444555555555555555555443333                         443332


Q ss_pred             cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccc
Q 047139          428 FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI  507 (611)
Q Consensus       428 ~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~  507 (611)
                      ...++.+++++|.....+|....+++.|     ++++|.++ .+|.++..+++|++|++++|+       .+. .+|..+
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~~~~nL~~L-----~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~-------~L~-~l~~~~  889 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPDISTNISDL-----NLSRTGIE-EVPWWIEKFSNLSFLDMNGCN-------NLQ-RVSLNI  889 (1153)
T ss_pred             ccccCEEECCCCCccccccccccccCEe-----ECCCCCCc-cChHHHhcCCCCCEEECCCCC-------CcC-ccCccc
Confidence            2344555555544434444433444433     34777776 567777777777777777753       222 355566


Q ss_pred             cCcCCCCEEECcCCc
Q 047139          508 GSLLTIRFLVLSNNH  522 (611)
Q Consensus       508 ~~l~~L~~L~Ls~n~  522 (611)
                      ..+++|+.+++++|.
T Consensus       890 ~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        890 SKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccCCCeeecCCCc
Confidence            667777777777774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.1e-21  Score=212.57  Aligned_cols=264  Identities=25%  Similarity=0.298  Sum_probs=142.0

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.   .+++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4567777777777 5676664  36788888888777 4554   2467788888888777 34532   3567777777


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI  393 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  393 (611)
                      +|.+.. +|.    ..++|+.|++++                           |.+. .+|.   ..++|+.|++++|++
T Consensus       271 ~N~L~~-Lp~----lp~~L~~L~Ls~---------------------------N~Lt-~LP~---~p~~L~~LdLS~N~L  314 (788)
T PRK15387        271 SNPLTH-LPA----LPSGLCKLWIFG---------------------------NQLT-SLPV---LPPGLQELSVSDNQL  314 (788)
T ss_pred             CCchhh-hhh----chhhcCEEECcC---------------------------Cccc-cccc---cccccceeECCCCcc
Confidence            777653 222    113344444444                           3322 1222   124567777777766


Q ss_pred             ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139          394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ  473 (611)
Q Consensus       394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~  473 (611)
                      ++ +|.    ...+|+.|++++|++++ +|...  ..|+.|++++|++++ +|....+++.|     ++++|.+++ +|.
T Consensus       315 ~~-Lp~----lp~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp~~L~~L-----~Ls~N~L~~-LP~  379 (788)
T PRK15387        315 AS-LPA----LPSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLPSELYKL-----WAYNNRLTS-LPA  379 (788)
T ss_pred             cc-CCC----CcccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCCccccee-----hhhcccccc-Ccc
Confidence            64 333    12356777777777763 44311  245666666666653 33333333332     335555552 343


Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      .   .++|+.|++++|+++         .+|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|.
T Consensus       380 l---~~~L~~LdLs~N~Lt---------~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~  439 (788)
T PRK15387        380 L---PSGLKELIVSGNRLT---------SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPE  439 (788)
T ss_pred             c---ccccceEEecCCccc---------CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccCh
Confidence            2   234555555555544         22221   134555555555555 24432   124455555555555 4555


Q ss_pred             HHhhcCCCCcEEECcCCcCcccCCccc
Q 047139          554 WIGESMPSLSILRLRSNHFNGTIPSEL  580 (611)
Q Consensus       554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l  580 (611)
                      .+.. +++|+.|+|++|+++|.+|..+
T Consensus       440 sl~~-L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        440 SLIH-LSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             HHhh-ccCCCeEECCCCCCCchHHHHH
Confidence            5543 5555555555555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=4.5e-23  Score=197.22  Aligned_cols=250  Identities=25%  Similarity=0.267  Sum_probs=175.0

Q ss_pred             eEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccC-CCCCcccccccCCCCCCCCEEEccc
Q 047139          134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSG-NSFLEGQLSRNLGTLCNLQTLKLSL  212 (611)
Q Consensus       134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~l~~  212 (611)
                      .++|..|.|+...|.+|+.+++||.|||++|.|+.+-|++|.++.+|..|-+.+ |+ ++...-..|+++..|+.|.+.-
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcCh
Confidence            556666677766777899999999999999999988899999998888877777 66 4544446688899999999999


Q ss_pred             ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc------------ccCCCCccCc
Q 047139          213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL------------GSIPPSLGNL  280 (611)
Q Consensus       213 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~~l~~l  280 (611)
                      |++.....+.+..++      +|..|.+.+|.+...--..+..+..++.+.+..|.+.            -..|..++..
T Consensus       150 n~i~Cir~~al~dL~------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  150 NHINCIRQDALRDLP------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             hhhcchhHHHHHHhh------hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            998888888888888      8888999999887333337788888888888877632            1122222222


Q ss_pred             ccCceEEec-------------------------CCccccCCC-cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCE
Q 047139          281 TFLEELYLT-------------------------SNQMNGKFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEE  334 (611)
Q Consensus       281 ~~L~~L~L~-------------------------~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  334 (611)
                      ....-..+.                         .+...+..| ..|..+++|++|+|++|++++.-+ ..|.+...+++
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~e  302 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQE  302 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhh
Confidence            222211121                         222222222 236778888888888888876444 47888888888


Q ss_pred             EEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139          335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS  394 (611)
Q Consensus       335 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  394 (611)
                      |.+..|+...+...   .+..+..|+.|+|.+|+++...|..|.....|.+|.+-.|.+.
T Consensus       303 L~L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhcCcchHHHHHHH---hhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            88887555333222   2344557777888888888777777877888888887777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.1e-20  Score=202.79  Aligned_cols=82  Identities=26%  Similarity=0.323  Sum_probs=65.6

Q ss_pred             CcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      +.|++++|.+++ +|..   .++|+.|++++|+++         .+|..   ..+|+.|++++|+++ .+|..+.++++|
T Consensus       385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls---------sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT---------SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC---------CCCcc---hhhhhhhhhccCccc-ccChHHhhccCC
Confidence            445558888874 5543   367999999999877         34432   246889999999999 789999999999


Q ss_pred             CEEECCCCcCcccChhHHh
Q 047139          538 DSLDLGENQLSGNIPAWIG  556 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~~l~  556 (611)
                      +.|+|++|++++..|..+.
T Consensus       448 ~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        448 TTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CeEECCCCCCCchHHHHHH
Confidence            9999999999998888763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=8.1e-22  Score=188.68  Aligned_cols=401  Identities=21%  Similarity=0.192  Sum_probs=195.7

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccc-ccCCCccchhhhcCcccCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL-NQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~~~~~  232 (611)
                      ..-+.++|..|+|+...|.+|+.+++||.|||++|. ++..-|.+|..++.|..|-+.+ |+|+....+.|+++.     
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-----  140 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-----  140 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-----
Confidence            345677888888886666777778888888887777 5556666666666665555544 666655555555555     


Q ss_pred             CCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC-CccCcccCceEEecCCccccCCCcCCCCCCCCCEEE
Q 047139          233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE  311 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  311 (611)
                       .|+.|.+.-|++.-.....|..++++..|.+.+|.+. .++. .|..+..++.+.+..|.+..     ..+++.+....
T Consensus       141 -slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~  213 (498)
T KOG4237|consen  141 -SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL  213 (498)
T ss_pred             -HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH
Confidence             5555555555555444555555555555555555544 2332 44445555555554444211     01111111000


Q ss_pred             ccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC-CcceeEEEecccccCcccc-hhccCCCCCCEEEcc
Q 047139          312 LSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP-PFKLRYLVIRYYQLGPKFP-TWLRNQTELTTLVLN  389 (611)
Q Consensus       312 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~  389 (611)
                      . .+      + ..+++........+.+.+.....   ...+.. ...+..--.+.+...+..| ..|+.+++|++|+++
T Consensus       214 a-~~------~-ietsgarc~~p~rl~~~Ri~q~~---a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  214 A-MN------P-IETSGARCVSPYRLYYKRINQED---ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             h-hc------h-hhcccceecchHHHHHHHhcccc---hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence            0 00      0 01122221111111111010000   000000 0011111112222233333 346777788888888


Q ss_pred             CcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee
Q 047139          390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN  468 (611)
Q Consensus       390 ~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~  468 (611)
                      +|++++.-+.+|.+. ..++.|.|..|++...-...+... .++.|++.+|+++...|..+..+..+  .+|++-.|.+.
T Consensus       283 nN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l--~~l~l~~Np~~  359 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL--STLNLLSNPFN  359 (498)
T ss_pred             CCccchhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee--eeeehccCccc
Confidence            888877777776664 577777777777763322223222 56666666666666666555555444  44444544332


Q ss_pred             cc-----cccch-----------hccCCCCeEECcCCCCCCCCCCcccccCcccccC---------cCCCCE-EECcCCc
Q 047139          469 GS-----IPQSV-----------GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS---------LLTIRF-LVLSNNH  522 (611)
Q Consensus       469 ~~-----~~~~l-----------~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~---------l~~L~~-L~Ls~n~  522 (611)
                      --     +-+|+           .+...++.+.+++..+.+     |+...|+..+.         ++-+.+ .-.|+..
T Consensus       360 CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~-----~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~  434 (498)
T KOG4237|consen  360 CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD-----FRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL  434 (498)
T ss_pred             CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccc-----cccCCccccCCCCCCCCCCCcchhhhhHhhcccc
Confidence            10     00011           111234444444443332     22222222211         111211 1222222


Q ss_pred             ccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCC
Q 047139          523 LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN  594 (611)
Q Consensus       523 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n  594 (611)
                      +. .+|..+-  ..-..|++.+|.++ .+|...   +.+| .+|+++|+++-.--..|.+++.|.+|-+|+|
T Consensus       435 lk-~lp~~iP--~d~telyl~gn~~~-~vp~~~---~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LK-LLPRGIP--VDVTELYLDGNAIT-SVPDEL---LRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hh-hcCCCCC--chhHHHhcccchhc-ccCHHH---Hhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            22 3332221  22356777777777 677662   4556 6777777777444456667777777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.7e-19  Score=192.41  Aligned_cols=247  Identities=27%  Similarity=0.434  Sum_probs=125.8

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +...|++++++++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4556666666665 4454442  35666667666666 4455443  46666666666665 3444332  356666666


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI  393 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  393 (611)
                      +|.+.. +|.. +.  ++|+.|++++                           |.+. .+|..+.  ++|+.|++++|++
T Consensus       250 ~N~L~~-LP~~-l~--s~L~~L~Ls~---------------------------N~L~-~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        250 INRITE-LPER-LP--SALQSLDLFH---------------------------NKIS-CLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             CCccCc-CChh-Hh--CCCCEEECcC---------------------------CccC-ccccccC--CCCcEEECCCCcc
Confidence            666542 3331 11  2333333333                           2222 1222221  3455666666655


Q ss_pred             ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139          394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ  473 (611)
Q Consensus       394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~  473 (611)
                      ++ +|..+.   ++|+.|++++|+++. +|...                      ..+     |++|++++|.+++ +|.
T Consensus       296 t~-LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l----------------------~~s-----L~~L~Ls~N~Lt~-LP~  342 (754)
T PRK15370        296 RT-LPAHLP---SGITHLNVQSNSLTA-LPETL----------------------PPG-----LKTLEAGENALTS-LPA  342 (754)
T ss_pred             cc-Ccccch---hhHHHHHhcCCcccc-CCccc----------------------ccc-----ceeccccCCcccc-CCh
Confidence            52 333221   244555555555442 22211                      112     2334446666653 444


Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      .+.  ++|+.|++++|+++         .+|..+.  ++|++|++++|+++ .+|..+.  ..|+.|++++|+++ .+|.
T Consensus       343 ~l~--~sL~~L~Ls~N~L~---------~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        343 SLP--PELQVLDVSKNQIT---------VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE  405 (754)
T ss_pred             hhc--CcccEEECCCCCCC---------cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence            432  56777777766655         2333221  36777777777776 4554443  35667777777766 4554


Q ss_pred             HHhh---cCCCCcEEECcCCcCc
Q 047139          554 WIGE---SMPSLSILRLRSNHFN  573 (611)
Q Consensus       554 ~l~~---~l~~L~~L~ls~n~l~  573 (611)
                      .+..   .++.+..|++.+|+++
T Consensus       406 sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        406 SLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hHHHHhhcCCCccEEEeeCCCcc
Confidence            3321   2466677777777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=9e-18  Score=183.62  Aligned_cols=266  Identities=22%  Similarity=0.330  Sum_probs=158.9

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCC---CCCCC-CCCCCCCccc----------------EEecCCCCcEEEEeCCCCCCCC
Q 047139           37 SGCKEVEREALLQFKQNLTDPSG---RLSSW-VGEDCCSWRG----------------VGCNNRTGSIIMLNLNNPFRDS   96 (611)
Q Consensus        37 ~~~~~~~~~~ll~~k~~~~~~~~---~~~~W-~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~~~   96 (611)
                      ++..++|.+.+++..+.+..|..   .-+.| .++++|.-+.                |.|.  .+.|+.+..-+.....
T Consensus        58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~  135 (754)
T PRK15370         58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQAS  135 (754)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccccc
Confidence            45578999999999999987752   22349 6678997555                5564  3566666655521111


Q ss_pred             CC-cccc-----cccccceeeeC--------ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEcc
Q 047139           97 FD-SYED-----DAVHELRGKIS--------PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLS  162 (611)
Q Consensus        97 ~~-~~~~-----~~~~~l~~~~~--------~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  162 (611)
                      .. ...+     .........-+        ..+..+.     +-..++.+.|+++++.++ .+|..+.  ++|+.|+++
T Consensus       136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~-----~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls  207 (754)
T PRK15370        136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMR-----DCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD  207 (754)
T ss_pred             cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHH-----hhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence            00 0000     00000000000        0010000     001112335555555555 3555443  578889999


Q ss_pred             CCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccC
Q 047139          163 SNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGY  242 (611)
Q Consensus       163 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~  242 (611)
                      +|+++ .+|..+.  .+|++|++++|.+ + .+|..+.  .+|+.|++++|.+. .+|..+.  .      +|+.|++++
T Consensus       208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s------~L~~L~Ls~  271 (754)
T PRK15370        208 NNELK-SLPENLQ--GNIKTLYANSNQL-T-SIPATLP--DTIQEMELSINRIT-ELPERLP--S------ALQSLDLFH  271 (754)
T ss_pred             CCCCC-cCChhhc--cCCCEEECCCCcc-c-cCChhhh--ccccEEECcCCccC-cCChhHh--C------CCCEEECcC
Confidence            99888 5666554  5888999988884 3 4665543  47888888888887 4454442  2      788888888


Q ss_pred             CCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccC
Q 047139          243 NQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT  322 (611)
Q Consensus       243 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  322 (611)
                      |+++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.+++ +|
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CC
Confidence            8887 5666554  47888888888887 4565443  467888888888873 554432  578888888887765 44


Q ss_pred             hhhhcCCCCCCEEEcCccC
Q 047139          323 DAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       323 ~~~l~~l~~L~~L~l~~~~  341 (611)
                      . .+  .++|+.|++++|.
T Consensus       342 ~-~l--~~sL~~L~Ls~N~  357 (754)
T PRK15370        342 A-SL--PPELQVLDVSKNQ  357 (754)
T ss_pred             h-hh--cCcccEEECCCCC
Confidence            3 22  2466666666643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.7e-19  Score=181.65  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             CCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCcCc
Q 047139          511 LTIRFLVLSNNHLSG----EIPPSLKNCSLMDSLDLGENQLS  548 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~  548 (611)
                      +.|++|++++|.++.    .+...+..+++|+++++++|.++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            345555555554441    12233334444555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.1e-18  Score=177.02  Aligned_cols=202  Identities=28%  Similarity=0.289  Sum_probs=117.0

Q ss_pred             EEccCCcCc-cCCCccccCCCCCCEEEccCCCCCC----CCCccCCCCCCCCEEEccCCCCCc------ccccccCCCCC
Q 047139          135 LDLSNNGFN-STLPHWLFNITNLLSLDLSSNDLQG----DIPDGFSSLNSLQLLDLSGNSFLE------GQLSRNLGTLC  203 (611)
Q Consensus       135 L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~~~~------~~~~~~l~~l~  203 (611)
                      |+|+.+.++ +..+..+..+.+|+.|+++++.++.    .++..+...+++++++++++.+ .      ..++..+.+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcC
Confidence            344444444 2344455666667777777777642    2444556666777777777663 2      12334556677


Q ss_pred             CCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc----cCCcccCCC-CCCcEEEccCCccccc----CC
Q 047139          204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG----NLPISLGYL-KNLRYLELWYNSFLGS----IP  274 (611)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p  274 (611)
                      +|++|++++|.+.+..+..+..+...   ++|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            77777777777766555555554411   247777777777662    222334455 6777777777776632    23


Q ss_pred             CCccCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCCccccccCh---hhhcCCCCCCEEEcCcc
Q 047139          275 PSLGNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDNQWEGFITD---AHLRNLTSLEELSLIKT  340 (611)
Q Consensus       275 ~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~~  340 (611)
                      ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+....   ..+..+++|++|++++|
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            3445556677777777776632    223344456777777777766533211   13445566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.3e-19  Score=152.73  Aligned_cols=166  Identities=31%  Similarity=0.528  Sum_probs=134.8

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      +..+.+++.|.+|.|+++           .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++  ...
T Consensus        29 Lf~~s~ITrLtLSHNKl~-----------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~l   94 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-----------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NIL   94 (264)
T ss_pred             ccchhhhhhhhcccCcee-----------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcC
Confidence            455666666777766664           56778999999999999999998 7888899999999999998885  568


Q ss_pred             cccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP  274 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  274 (611)
                      |..|+.++.|+.||+.+|++.. ..|.-|..++      .|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp  166 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP  166 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc
Confidence            9999999999999999998764 3566666666      7888888888887 77888888888888888888877 678


Q ss_pred             CCccCcccCceEEecCCccccCCCcCCCCC
Q 047139          275 PSLGNLTFLEELYLTSNQMNGKFPESFGQL  304 (611)
Q Consensus       275 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  304 (611)
                      ..++.++.|++|.+.+|.++ .+|+.++++
T Consensus       167 keig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  167 KEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            88888888888888888887 666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=2.5e-18  Score=146.46  Aligned_cols=159  Identities=32%  Similarity=0.547  Sum_probs=144.0

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +.++++.+.|.+++|+++ .+|..|..+.+|+.|++++|++  ..+|..++.+++|++|+++-|++. ..|..|+.++  
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence            556788899999999999 7788899999999999999996  569999999999999999999986 6788899888  


Q ss_pred             CCCCCCcEEEccCCCCC-ccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          230 INSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                          .|+.||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+++|+
T Consensus       103 ----~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen  103 ----ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             ----hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence                9999999999986 467888999999999999999998 78889999999999999999987 6899999999999


Q ss_pred             EEEccCCccccc
Q 047139          309 VLELSDNQWEGF  320 (611)
Q Consensus       309 ~L~L~~n~l~~~  320 (611)
                      +|++.+|+++-.
T Consensus       177 elhiqgnrl~vl  188 (264)
T KOG0617|consen  177 ELHIQGNRLTVL  188 (264)
T ss_pred             HHhcccceeeec
Confidence            999999998753

>PLN03150 hypothetical protein; Provisional

Probab=99.60  E-value=6.3e-15  Score=160.82  Aligned_cols=137  Identities=38%  Similarity=0.605  Sum_probs=79.1

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC----CcccEEecCC--CC--cEEEEeCCCCCCCCCCcccccccccc
Q 047139           37 SGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCC----SWRGVGCNNR--TG--SIIMLNLNNPFRDSFDSYEDDAVHEL  108 (611)
Q Consensus        37 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~--~~--~v~~l~l~~~~~~~~~~~~~~~~~~l  108 (611)
                      ..+.++|.+||+++|+++.+|..  .+|.+..||    .|.||.|...  .+  +|+.|+|++              +++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------n~L  430 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------QGL  430 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC--------------CCc
Confidence            34567899999999999976642  479776663    7999999531  11  356666655              455


Q ss_pred             eeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCC
Q 047139          109 RGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN  188 (611)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n  188 (611)
                      .|.+|..+..+++|++|+|++|++          .|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|++++|
T Consensus       431 ~g~ip~~i~~L~~L~~L~Ls~N~l----------~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        431 RGFIPNDISKLRHLQSINLSGNSI----------RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             cccCCHHHhCCCCCCEEECCCCcc----------cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            555555555555555444443322          3445555555555555555555555555555555555555555555


Q ss_pred             CCCcccccccCC
Q 047139          189 SFLEGQLSRNLG  200 (611)
Q Consensus       189 ~~~~~~~~~~l~  200 (611)
                      . +.|.+|..++
T Consensus       501 ~-l~g~iP~~l~  511 (623)
T PLN03150        501 S-LSGRVPAALG  511 (623)
T ss_pred             c-ccccCChHHh
Confidence            4 3444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2.2e-13  Score=137.12  Aligned_cols=136  Identities=32%  Similarity=0.532  Sum_probs=100.2

Q ss_pred             cCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcc
Q 047139          444 PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHL  523 (611)
Q Consensus       444 ~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l  523 (611)
                      .+|..+.+++.|  +.+||+.|+++ .+|..++.|+ |+.|-+++|+++         .+|+.++.+..|..||.+.|.+
T Consensus       112 ~ip~~i~~L~~l--t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~---------~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  112 TIPEAICNLEAL--TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT---------SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             ecchhhhhhhHH--HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc---------cCCcccccchhHHHhhhhhhhh
Confidence            345455555555  55666777776 6677777775 777777777766         6777777777888888888887


Q ss_pred             cccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139          524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       524 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      - .+|..++++.+|+.|+++.|++. .+|..+.. ++ |..||+|+|+++ .||-.|.+++.|++|-|.+|++.
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            7 67777888888888888888877 67777662 43 777888888887 77888888888888888888775

>PLN03150 hypothetical protein; Provisional

Probab=99.15  E-value=6.8e-11  Score=129.37  Aligned_cols=94  Identities=34%  Similarity=0.587  Sum_probs=44.0

Q ss_pred             ccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccc
Q 047139          501 GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL  580 (611)
Q Consensus       501 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l  580 (611)
                      |.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.. +++|+.|+|++|+++|.+|..+
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEECcCCcccccCChHH
Confidence            444444444444444444444444444444444444444444444444444444443 4444444444444444444444


Q ss_pred             cCC-CCCCEeeccCCc
Q 047139          581 CKL-SALHILDLSHNN  595 (611)
Q Consensus       581 ~~l-~~L~~L~ls~n~  595 (611)
                      ... ..+..+++.+|+
T Consensus       511 ~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        511 GGRLLHRASFNFTDNA  526 (623)
T ss_pred             hhccccCceEEecCCc
Confidence            332 233444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=4.7e-12  Score=127.69  Aligned_cols=169  Identities=33%  Similarity=0.511  Sum_probs=128.6

Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc
Q 047139          135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ  214 (611)
Q Consensus       135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~  214 (611)
                      .||+.|++. .+|..++.+..|..+.+..|.+. .+|..+.++..|.++|++.|++  ..+|..++.|+ |+.|-+++|+
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEEecCc
Confidence            344444443 67888888888888888888887 7788888888888888888885  45677776654 7888888888


Q ss_pred             CCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139          215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       215 l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  294 (611)
                      ++ .+|+.++...      +|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+++..+ .|..||++.|++.
T Consensus       155 l~-~lp~~ig~~~------tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  155 LT-SLPEEIGLLP------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             cc-cCCcccccch------hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            76 4455555555      7888888888887 67788888888888888888877 566667644 5778888888887


Q ss_pred             cCCCcCCCCCCCCCEEEccCCcccc
Q 047139          295 GKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       295 ~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                       .+|..|.+|+.|++|-|.+|.+..
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCC
Confidence             678888888888888888888765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.7e-10  Score=119.13  Aligned_cols=178  Identities=35%  Similarity=0.545  Sum_probs=120.5

Q ss_pred             CCCEEEccCcccccccCcccccC--CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139          407 TLDELDVGGNHLSGRIPNTLVFR--FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL  484 (611)
Q Consensus       407 ~L~~L~ls~n~l~~~~~~~~~~~--~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L  484 (611)
                      .+..+++.+|.++ .++......  .++.+++++|++... |..+..+..|  +.|++++|+++ .+|...+..+.|+.|
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L--~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNL--KNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccc--cccccCCchhh-hhhhhhhhhhhhhhe
Confidence            4555555555555 333333332  456666666655532 2223333333  55666888887 566655578888889


Q ss_pred             ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139          485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI  564 (611)
Q Consensus       485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~  564 (611)
                      ++++|++.         .+|..+.....|+++++++|.+. ..+..+.++.++..+.+.+|++. .++..+.. +++++.
T Consensus       192 ~ls~N~i~---------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~-l~~l~~  259 (394)
T COG4886         192 DLSGNKIS---------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN-LSNLET  259 (394)
T ss_pred             eccCCccc---------cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc-ccccce
Confidence            88888887         45555444566888999988654 56667888888888888888877 34555654 788999


Q ss_pred             EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139          565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC  603 (611)
Q Consensus       565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~  603 (611)
                      |++++|.++ .++. ++.+.+++.|++++|.++...|..
T Consensus       260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            999999888 4554 788888999999998888766653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=4.9e-11  Score=111.20  Aligned_cols=129  Identities=28%  Similarity=0.346  Sum_probs=102.8

Q ss_pred             cCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139          457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL  536 (611)
Q Consensus       457 l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  536 (611)
                      |+++||++|.++ .+.++..-.|+++.|++++|.|..+.          .+..+++|+.||||+|.++ .+...=.++-+
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~----------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ----------NLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh----------hhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            477777999997 67777788899999999999987443          2445889999999999988 44555567888


Q ss_pred             CCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc-CCccccCCCCCCEeeccCCcCccCC
Q 047139          537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT-IPSELCKLSALHILDLSHNNLLGPI  600 (611)
Q Consensus       537 L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~g~i  600 (611)
                      ++.|.|++|.|..  ...+.+ +-+|..||+++|+|... --..+++++.|+.+.+.+|++++.+
T Consensus       354 IKtL~La~N~iE~--LSGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999999998862  345665 88999999999998742 2346889999999999999998643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=2.3e-10  Score=119.67  Aligned_cols=174  Identities=40%  Similarity=0.574  Sum_probs=91.7

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCC-CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      +..++.++.|++.+|.++ .+|....... +|+.|++++|.+  ..+|..++.+++|+.|++++|+++...+ .....+ 
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~-  186 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLS-  186 (394)
T ss_pred             hhcccceeEEecCCcccc-cCccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhhhhhh-hhhhhh-
Confidence            333455566666666655 4444455553 566666666653  2344455566666666666665553222 111222 


Q ss_pred             cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                           .|+.|++++|++. .+|..+.....|+++.+++|++. ..+..+.++.++..+.+.+|++. ..+..++.++.++
T Consensus       187 -----~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~  258 (394)
T COG4886         187 -----NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE  258 (394)
T ss_pred             -----hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence                 5666666666665 44444444445666666666432 33444555555555555555554 2244455555566


Q ss_pred             EEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          309 VLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      .|++++|.+... +.  +..+.+++.|++++
T Consensus       259 ~L~~s~n~i~~i-~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         259 TLDLSNNQISSI-SS--LGSLTNLRELDLSG  286 (394)
T ss_pred             eecccccccccc-cc--ccccCccCEEeccC
Confidence            666666655432 21  55556666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=4.6e-11  Score=114.06  Aligned_cols=192  Identities=21%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             CCcceeEEEecccccCcccch----hccCCCCCCEEEccCcccccccchhHHhc------------CCCCCEEEccCccc
Q 047139          355 PPFKLRYLVIRYYQLGPKFPT----WLRNQTELTTLVLNSASISDTLPSWFLQL------------NLTLDELDVGGNHL  418 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~~~~p~~~~~~------------~~~L~~L~ls~n~l  418 (611)
                      .+++|++++|+.|-++...+.    .+.++..|++|.+.+|.+.......+...            .+.|+.+....|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            345777777777777765544    34667888888888887764333332221            23344444444443


Q ss_pred             ccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec----ccccchhccCCCCeEECcCCCCCCC
Q 047139          419 SGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING----SIPQSVGNLKQLLTLVISNNNLSDM  494 (611)
Q Consensus       419 ~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l  494 (611)
                      -......+...                -...+.+     +.+.+..|.+..    .+...|..+++|+.|||.+|-++.-
T Consensus       170 en~ga~~~A~~----------------~~~~~~l-----eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  170 ENGGATALAEA----------------FQSHPTL-----EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             ccccHHHHHHH----------------HHhcccc-----ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence            21111000000                0000111     222224443321    2233455666666666666655422


Q ss_pred             CCCcccccCcccccCcCCCCEEECcCCcccccCcccc-----cCCCCCCEEECCCCcCccc----ChhHHhhcCCCCcEE
Q 047139          495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-----KNCSLMDSLDLGENQLSGN----IPAWIGESMPSLSIL  565 (611)
Q Consensus       495 ~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----ip~~l~~~l~~L~~L  565 (611)
                      ..-.    +...++.++.|++|++++|.+.......+     ...++|++|.+.+|.|+..    +-..+.. .+.|+.|
T Consensus       229 gs~~----LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kL  303 (382)
T KOG1909|consen  229 GSVA----LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKL  303 (382)
T ss_pred             HHHH----HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHh
Confidence            2111    22233335566666666666653322221     2345666666666665521    1122232 4566666


Q ss_pred             ECcCCcC
Q 047139          566 RLRSNHF  572 (611)
Q Consensus       566 ~ls~n~l  572 (611)
                      +|++|++
T Consensus       304 nLngN~l  310 (382)
T KOG1909|consen  304 NLNGNRL  310 (382)
T ss_pred             cCCcccc
Confidence            6666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=6.4e-10  Score=99.76  Aligned_cols=119  Identities=31%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             CcccCCCCeeecccccchh-ccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccc-cCCC
Q 047139          458 RDLDISFNSINGSIPQSVG-NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-KNCS  535 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~  535 (611)
                      ++|+|++|.|+. + +.++ .+.+|+.|++++|.|+++.+          +..++.|++|++++|+|+. +++.+ ..++
T Consensus        22 ~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~----------l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   22 RELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG----------LPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT--------------TT--EEE--SS---S--CHHHHHH-T
T ss_pred             cccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC----------ccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            555556666653 2 2343 35566666666666664331          2225666666666666663 33233 3466


Q ss_pred             CCCEEECCCCcCcccCh-hHHhhcCCCCcEEECcCCcCcccCCc----cccCCCCCCEeec
Q 047139          536 LMDSLDLGENQLSGNIP-AWIGESMPSLSILRLRSNHFNGTIPS----ELCKLSALHILDL  591 (611)
Q Consensus       536 ~L~~L~Ls~N~l~~~ip-~~l~~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~l  591 (611)
                      +|+.|++++|+|...-. ..+.. +++|++|++.+|+++.. +.    -+..+++|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~-l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSS-LPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHHhHHHHc-CCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            66666666666653111 22332 66666666666666632 21    2344566666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-10  Score=114.65  Aligned_cols=183  Identities=25%  Similarity=0.229  Sum_probs=77.3

Q ss_pred             ccCCCCCCEEEccCCCCCCC--CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc-hhhhcC
Q 047139          150 LFNITNLLSLDLSSNDLQGD--IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS-DFIDGL  226 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l  226 (611)
                      ...|++++.|||+.|-+..-  +-.....+++|+.|+++.|++....-...-..+++|+.|.++.|.++.... ..+..+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            44455555555555544321  112234455555555555553211111111234455555555555542211 111222


Q ss_pred             cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC--CCccCcccCceEEecCCccccC-CCcC---
Q 047139          227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP--PSLGNLTFLEELYLTSNQMNGK-FPES---  300 (611)
Q Consensus       227 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~-~~~~---  300 (611)
                      +      +|+.|++.+|............+..|+.|||++|.+-. .+  ...+.++.|+.|+++.+.+... .|+.   
T Consensus       222 P------sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  222 P------SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             C------cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccch
Confidence            2      55555555553221222222334455555555555442 12  2244555555555555554431 1221   


Q ss_pred             --CCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          301 --FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       301 --l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                        ....++|++|++..|++...-.-..+..+++|+.|.+..
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             hhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence              123455555555555553322222333334444444333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=6.2e-10  Score=99.86  Aligned_cols=109  Identities=28%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             hccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhH
Q 047139          476 GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW  554 (611)
Q Consensus       476 ~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  554 (611)
                      .++.++++|+|++|.|+.+.          .++ .+.+|+.||+++|.|+. ++ .+..++.|+.|++++|+|+ .++..
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~   82 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEG   82 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHH
T ss_pred             cccccccccccccccccccc----------chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccc
Confidence            34445666666666665332          111 24566666666666663 22 4556666666666666666 34444


Q ss_pred             HhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCc
Q 047139          555 IGESMPSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       555 l~~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      +...+++|++|++++|+|...- -..+..+++|++|++.+|+++
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            4333666666666666665321 134445666666666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=9.8e-11  Score=111.86  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             CCCCCEEEccCCcccccc---ChhhhcCCCCCCEEEcCccCCCCcee-eccCCCCCCcceeEEEecccccCc----ccch
Q 047139          304 LSAIRVLELSDNQWEGFI---TDAHLRNLTSLEELSLIKTSNSSLSF-NISFDWIPPFKLRYLVIRYYQLGP----KFPT  375 (611)
Q Consensus       304 l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~----~~~~  375 (611)
                      -++|+++...+|.+...-   ....++..+.|+.+.++.|.+..-.. .....+..+++|+.|+++.|.++.    .+..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            345555555555543211   11234444555555555533311111 011122334444444444444432    2333


Q ss_pred             hccCCCCCCEEEccCcccccccchh----HHhcCCCCCEEEccCcccc
Q 047139          376 WLRNQTELTTLVLNSASISDTLPSW----FLQLNLTLDELDVGGNHLS  419 (611)
Q Consensus       376 ~l~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~ls~n~l~  419 (611)
                      .++.+++|+.|+++.|.+.......    +....|.|+.+.+.+|.++
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            4455566666666666665443332    2223456666666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.6e-10  Score=108.74  Aligned_cols=184  Identities=22%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             hccCCCCCCEEEccCcccccccc-hhHHhcCCCCCEEEccCcccccccCccccc--CCCceEEccCCccccc----CCCC
Q 047139          376 WLRNQTELTTLVLNSASISDTLP-SWFLQLNLTLDELDVGGNHLSGRIPNTLVF--RFPGSVDLSSNRFEGP----IPLW  448 (611)
Q Consensus       376 ~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~l~~l~ls~n~~~~~----~p~~  448 (611)
                      ....|++++.|+++.|-+....| ..+...+|+|+.|+++.|++.-........  ..++.|.++.|.++-.    +...
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34455666666666665543322 233444566666666666655322222211  1344455555544311    1111


Q ss_pred             CCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc-C
Q 047139          449 SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE-I  527 (611)
Q Consensus       449 ~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~-~  527 (611)
                      ++++..     |+|..|...+.......-+..|++|||++|++.+...-       ..++.++.|+.|+++.|.+... +
T Consensus       221 fPsl~~-----L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l~~L~~Lnls~tgi~si~~  288 (505)
T KOG3207|consen  221 FPSLEV-----LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-------YKVGTLPGLNQLNLSSTGIASIAE  288 (505)
T ss_pred             CCcHHH-----hhhhcccccceecchhhhhhHHhhccccCCcccccccc-------cccccccchhhhhccccCcchhcC
Confidence            233333     33355542222222333455566666666665533211       1233455666666666666532 2


Q ss_pred             ccc-----ccCCCCCCEEECCCCcCcccCh--hHHhhcCCCCcEEECcCCcCc
Q 047139          528 PPS-----LKNCSLMDSLDLGENQLSGNIP--AWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       528 p~~-----l~~l~~L~~L~Ls~N~l~~~ip--~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      |++     ...+++|++|++..|+|. .++  ..+.. +++|+.|.+..|.++
T Consensus       289 ~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~-l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  289 PDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT-LENLKHLRITLNYLN  339 (505)
T ss_pred             CCccchhhhcccccceeeecccCccc-cccccchhhc-cchhhhhhccccccc
Confidence            333     345566667777776664 222  22332 556666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=3.8e-10  Score=105.35  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=7.9

Q ss_pred             cccCCCCCCEEECCCC
Q 047139          115 SLLQLKDLEYLDLSLN  130 (611)
Q Consensus       115 ~l~~l~~L~~L~ls~n  130 (611)
                      .+.-+++|..+.+|.+
T Consensus       209 ~l~~f~~l~~~~~s~~  224 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSAL  224 (490)
T ss_pred             chHHhhhhheeeeecc
Confidence            3444555555555544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.80  E-value=7.7e-09  Score=69.61  Aligned_cols=38  Identities=58%  Similarity=1.120  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCCCcccEEec
Q 047139           41 EVEREALLQFKQNLT-DPSGRLSSWV-G--EDCCSWRGVGCN   78 (611)
Q Consensus        41 ~~~~~~ll~~k~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~   78 (611)
                      ++|++||++||+++. +|.+.+.+|. .  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 5778999993 3  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=4.3e-09  Score=77.49  Aligned_cols=59  Identities=37%  Similarity=0.576  Sum_probs=27.2

Q ss_pred             CCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139          536 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN  595 (611)
Q Consensus       536 ~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  595 (611)
                      +|++|++++|+++ .+|...+..+++|++|++++|+++...|..|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444444 3333333334445555555444444444444445555555555444

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=8.6e-09  Score=115.45  Aligned_cols=105  Identities=33%  Similarity=0.427  Sum_probs=54.9

Q ss_pred             CCCEEEccccc--CCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139          204 NLQTLKLSLNQ--FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT  281 (611)
Q Consensus       204 ~L~~L~l~~n~--l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  281 (611)
                      +|++|-+..|.  +.....+.|..++      .|+.||+++|.--+.+|..++.+-+|++|++++..+. .+|..+++++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~------~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk  618 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLP------LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK  618 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCc------ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence            45555444443  2323333344444      5555555555444455555555556666666655555 5555555566


Q ss_pred             cCceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139          282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN  315 (611)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  315 (611)
                      +|.+|++..+.-...+|.....+++|++|.+...
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeecc
Confidence            6666665555443334444444556666555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=7.3e-09  Score=116.01  Aligned_cols=85  Identities=29%  Similarity=0.368  Sum_probs=42.8

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      |..++.|++||+++|.=-+.+|+.|+++-+||+|+++++.+  ..+|..+++++.|.+|++..+.....+|.....+.  
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~--  642 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ--  642 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhheeccccccccccccchhhhcc--
Confidence            44455555555555444445555555555555555555553  24555555555555555555543333344444344  


Q ss_pred             CCCCCCcEEEccC
Q 047139          230 INSSSLARLELGY  242 (611)
Q Consensus       230 ~~~~~L~~L~Ls~  242 (611)
                          +|++|.+..
T Consensus       643 ----~Lr~L~l~~  651 (889)
T KOG4658|consen  643 ----SLRVLRLPR  651 (889)
T ss_pred             ----cccEEEeec
Confidence                555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=3.2e-08  Score=72.85  Aligned_cols=59  Identities=36%  Similarity=0.416  Sum_probs=30.7

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ  292 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  292 (611)
                      +|++|++++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554434455555555555555555554444455555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1.4e-08  Score=106.48  Aligned_cols=63  Identities=38%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG  217 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  217 (611)
                      +..+++|++|++++|.|+...  .+..++.|+.|++++|.+ .  -...+..++.|+.+++++|.+..
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i-~--~~~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLI-S--DISGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhhhhcchheecccccccccc--chhhccchhhheeccCcc-h--hccCCccchhhhcccCCcchhhh
Confidence            444555555555555554221  234444455555555552 1  12233334455555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=9.5e-09  Score=106.96  Aligned_cols=132  Identities=25%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             cccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcc
Q 047139          426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE  505 (611)
Q Consensus       426 ~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~  505 (611)
                      +.+..+...+.+.|.++-. ...+.-+.  .++.|+|++|+++...  .+..|++|+.|||++|.+..++         .
T Consensus       161 ~~Wn~L~~a~fsyN~L~~m-D~SLqll~--ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp---------~  226 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLM-DESLQLLP--ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVP---------Q  226 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhH-HHHHHHHH--HhhhhccchhhhhhhH--HHHhcccccccccccchhcccc---------c
Confidence            3333455555666655421 11111111  1355666888887543  6778888888888888877433         2


Q ss_pred             cccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139          506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       506 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      .-..-..|+.|.+++|.++..  ..+.++.+|+.||+++|-|.+.---.....+..|+.|+|.+|++.
T Consensus       227 l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  227 LSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            111112488888888887732  356788888888888887765322111112667888888888876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.37  E-value=6.5e-08  Score=101.39  Aligned_cols=82  Identities=28%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      .++.+++..|.+.. +-..+..+++|+.+++.+|.+... ...+..+++|++|++++|.++...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            56666677776662 333355666677777777766633 222555666666666666665332  24455556666666


Q ss_pred             CCcccc
Q 047139          314 DNQWEG  319 (611)
Q Consensus       314 ~n~l~~  319 (611)
                      +|.+..
T Consensus       149 ~N~i~~  154 (414)
T KOG0531|consen  149 GNLISD  154 (414)
T ss_pred             cCcchh
Confidence            666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=8.3e-09  Score=96.56  Aligned_cols=153  Identities=19%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCc-cccc-CCCCccCcccCceEEecCCccccCCCcC-CCC-CCCCCE
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS-FLGS-IPPSLGNLTFLEELYLTSNQMNGKFPES-FGQ-LSAIRV  309 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~-l~~L~~  309 (611)
                      +|+.|.+.++.+.+.+...+++-.+|+.++++.+. ++.. ..-.+..++.|.+|++++|.+....-.. +.+ -++|+.
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            44445555555544444444444555555554442 1100 0001234455555555555443221110 111 134555


Q ss_pred             EEccCCc---cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccch---hccCCCCC
Q 047139          310 LELSDNQ---WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT---WLRNQTEL  383 (611)
Q Consensus       310 L~L~~n~---l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L  383 (611)
                      |+|+++.   ....+ ......+++|.+||+++  +..+.......+..++.|++|.++.|-.  ..|.   .+...+.|
T Consensus       291 LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD--~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSD--SVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhHhhhhhhHH-HHHHHhCCceeeecccc--ccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence            5555432   11111 11234455555555555  2233333333444455555555555531  2232   24556777


Q ss_pred             CEEEccCc
Q 047139          384 TTLVLNSA  391 (611)
Q Consensus       384 ~~L~l~~n  391 (611)
                      .+|++.++
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            77777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=6.2e-08  Score=80.40  Aligned_cols=136  Identities=24%  Similarity=0.265  Sum_probs=101.2

Q ss_pred             CcccCCCCeeecccccchh---ccCCCCeEECcCCCCCCCCCCcccccCcccccC-cCCCCEEECcCCcccccCcccccC
Q 047139          458 RDLDISFNSINGSIPQSVG---NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS-LLTIRFLVLSNNHLSGEIPPSLKN  533 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~-l~~L~~L~Ls~n~l~~~~p~~l~~  533 (611)
                      ..++|+.|.+- .+++...   ....|+..+|++|.+.         .+|+.+.. .+.++.|++++|.++ .+|..+..
T Consensus        30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa   98 (177)
T KOG4579|consen   30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA   98 (177)
T ss_pred             hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence            44666777764 4555443   3455667788888776         45555443 347899999999998 77888999


Q ss_pred             CCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccccc
Q 047139          534 CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF  607 (611)
Q Consensus       534 l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~  607 (611)
                      ++.|+.|+++.|.+. ..|.-++. +.++-.|+.-+|... .+|..+..-+.....++.++++.+.-|..+..+
T Consensus        99 m~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             hHHhhhcccccCccc-cchHHHHH-HHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            999999999999988 77888887 889999999999888 677665444555666778888988887765544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.9e-09  Score=98.70  Aligned_cols=64  Identities=17%  Similarity=0.075  Sum_probs=28.3

Q ss_pred             CCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccc
Q 047139          303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ  368 (611)
Q Consensus       303 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  368 (611)
                      .+++|.+|||+++..-...-...+..++.|++|.++.|+.  +..+....+...+.|.+|++.++-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            4455555555554321111112344455555555555432  222222233445566666665553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=4.8e-07  Score=84.96  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=16.9

Q ss_pred             CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      ++.+..|+|+.|++......+.+.++++|..|.++.
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence            344444555555554443333444555555544444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=1.2e-06  Score=82.43  Aligned_cols=36  Identities=36%  Similarity=0.446  Sum_probs=16.0

Q ss_pred             CCCCEEEccCCCCCC--CCCccCCCCCCCCEEEccCCC
Q 047139          154 TNLLSLDLSSNDLQG--DIPDGFSSLNSLQLLDLSGNS  189 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~Ls~n~  189 (611)
                      ++++.+||.+|.|+.  .+-.-+.++++|++|+++.|.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            444455555554431  222223444555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=1.5e-07  Score=98.23  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             CccccCCCCCCEEEccCCCCC
Q 047139          147 PHWLFNITNLLSLDLSSNDLQ  167 (611)
Q Consensus       147 p~~l~~l~~L~~L~L~~n~~~  167 (611)
                      |-.+..++.|++|.++++.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             CceeccccceeeEEecCcchh
Confidence            557788899999999999875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=7.8e-07  Score=82.54  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CCcceeEEEecccccCcccch----hccCCCCCCEEEccCcccc
Q 047139          355 PPFKLRYLVIRYYQLGPKFPT----WLRNQTELTTLVLNSASIS  394 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~  394 (611)
                      .++.|+..+|+.|.++..+|.    .+++-+.|.+|.+++|.+.
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            344555555555555554443    3345566666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=8e-06  Score=55.00  Aligned_cols=36  Identities=36%  Similarity=0.667  Sum_probs=17.6

Q ss_pred             CCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc
Q 047139          512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS  548 (611)
Q Consensus       512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  548 (611)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=2.4e-07  Score=77.00  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=84.1

Q ss_pred             CcccCCCCeeecccccch-hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139          458 RDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL  536 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  536 (611)
                      +..+|++|.+. ..|+.| ...+.++.+++++|+|+         .+|+.+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus        56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~  124 (177)
T KOG4579|consen   56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK  124 (177)
T ss_pred             EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence            44566888777 344444 34567889999998887         67778888999999999999998 66777777999


Q ss_pred             CCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCC
Q 047139          537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL  583 (611)
Q Consensus       537 L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l  583 (611)
                      +..|+.-+|.+. .||..++- ....-..++.++++.+.-+..+..+
T Consensus       125 l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  125 LDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             HHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCccccccc
Confidence            999999999887 78877653 3444445667788887766655444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=4.5e-06  Score=77.62  Aligned_cols=16  Identities=25%  Similarity=0.187  Sum_probs=9.0

Q ss_pred             CCCCCCcEEEccCCcc
Q 047139          254 GYLKNLRYLELWYNSF  269 (611)
Q Consensus       254 ~~l~~L~~L~L~~n~l  269 (611)
                      ++-+.|++|.+++|.+
T Consensus       117 s~~t~l~HL~l~NnGl  132 (388)
T COG5238         117 SSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hcCCCceeEEeecCCC
Confidence            3445566666666644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.8e-05  Score=53.31  Aligned_cols=36  Identities=31%  Similarity=0.637  Sum_probs=18.0

Q ss_pred             CCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139          536 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       536 ~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      +|++|++++|+|+ .+|..+.. +++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~-l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSN-LPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTT-CTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhC-CCCCCEEEecCCCCC
Confidence            4555555555555 44444443 555555555555555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00014  Score=73.72  Aligned_cols=138  Identities=14%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      +..+.++++|++++|.++           .+|.   -..+|++|.+++|.--..+|+.+  ..+|++|++++|..+ ..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-----------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sL  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-----------SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGL  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-----------ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-ccc
Confidence            555678888888877665           3341   12469999998865444666655  258899999988422 234


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCC--ccCCcccCCCCCCcEEEccCCcccccC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT--GNLPISLGYLKNLRYLELWYNSFLGSI  273 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~  273 (611)
                      |.      .|+.|++..+....     +..++     ++|+.|.+.+++..  ..+|..+  .++|++|++++|... ..
T Consensus       111 P~------sLe~L~L~~n~~~~-----L~~LP-----ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~L  171 (426)
T PRK15386        111 PE------SVRSLEIKGSATDS-----IKNVP-----NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-IL  171 (426)
T ss_pred             cc------ccceEEeCCCCCcc-----cccCc-----chHhheecccccccccccccccc--CCcccEEEecCCCcc-cC
Confidence            43      46777776554331     22232     16777777543311  0111111  146888888887755 34


Q ss_pred             CCCccCcccCceEEecCC
Q 047139          274 PPSLGNLTFLEELYLTSN  291 (611)
Q Consensus       274 p~~l~~l~~L~~L~L~~n  291 (611)
                      |..+.  .+|+.|+++.+
T Consensus       172 P~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        172 PEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccc--ccCcEEEeccc
Confidence            44333  47788887765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.0001  Score=74.68  Aligned_cols=133  Identities=14%  Similarity=0.198  Sum_probs=77.9

Q ss_pred             CCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCC-CCcceeecCcccCCCC-eeecccccchhccCCCCe
Q 047139          406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS-SNLTKLYLRDLDISFN-SINGSIPQSVGNLKQLLT  483 (611)
Q Consensus       406 ~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~-~~l~~L~l~~L~Ls~n-~l~~~~~~~l~~l~~L~~  483 (611)
                      .++..|++++|.++ .+|.  ...+++.|.++++.--..+|..+ .++     ++|++++| .+. .+|.      .|+.
T Consensus        52 ~~l~~L~Is~c~L~-sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nL-----e~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV--LPNELTEITIENCNNLTTLPGSIPEGL-----EKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC--CCCCCcEEEccCCCCcccCCchhhhhh-----hheEccCccccc-cccc------ccce
Confidence            67888888888766 4452  12368888888765444555433 233     45555887 443 4553      4677


Q ss_pred             EECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccc-cCcccccCCCCCCEEECCCCcCcccChhHHhhcCCC
Q 047139          484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSG-EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS  561 (611)
Q Consensus       484 L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~  561 (611)
                      |+++++...++.      .+|.      +|+.|.+.+++ ... .+|..+  -++|++|++++|... ..|..+   ..+
T Consensus       117 L~L~~n~~~~L~------~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L---P~S  178 (426)
T PRK15386        117 LEIKGSATDSIK------NVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL---PES  178 (426)
T ss_pred             EEeCCCCCcccc------cCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc---ccc
Confidence            777765544322      4554      46667765432 111 112111  157888888888766 455443   458


Q ss_pred             CcEEECcCCc
Q 047139          562 LSILRLRSNH  571 (611)
Q Consensus       562 L~~L~ls~n~  571 (611)
                      |+.|+++.|.
T Consensus       179 Lk~L~ls~n~  188 (426)
T PRK15386        179 LQSITLHIEQ  188 (426)
T ss_pred             CcEEEecccc
Confidence            8888888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=8.4e-05  Score=66.45  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=50.7

Q ss_pred             CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139          257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS  336 (611)
Q Consensus       257 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  336 (611)
                      .....+|+++|.+...  ..|..++.|.+|.+++|.++..-|.--.-+++|..|.|.+|.+.....-.-+..|+.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3456677777766422  33566677777777777777554443344566777777777765443333466666777776


Q ss_pred             cCccC
Q 047139          337 LIKTS  341 (611)
Q Consensus       337 l~~~~  341 (611)
                      +-+|+
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            66643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=1.1e-05  Score=88.51  Aligned_cols=152  Identities=24%  Similarity=0.307  Sum_probs=87.0

Q ss_pred             CCCCEEEccCCCCCcccccccCC-CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC
Q 047139          178 NSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL  256 (611)
Q Consensus       178 ~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l  256 (611)
                      .+|++||+++...+....|..++ .+|.|+.|.+++-.+....   |..  .|.+.++|..||+|+++++..  ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~--lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQ--LCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHH--HhhccCccceeecCCCCccCc--HHHhcc
Confidence            45677777666544444444444 4677777777766554321   111  122333777777777777632  566677


Q ss_pred             CCCcEEEccCCcccc-cCCCCccCcccCceEEecCCccccCC------CcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139          257 KNLRYLELWYNSFLG-SIPPSLGNLTFLEELYLTSNQMNGKF------PESFGQLSAIRVLELSDNQWEGFITDAHLRNL  329 (611)
Q Consensus       257 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  329 (611)
                      ++|+.|.+.+=.+.. ..-..+.++++|+.||+|........      -+.-..+|.||.||.+++.+...+-...+..-
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            777777776655442 11123566777788877776543211      11223467888888888777766555444444


Q ss_pred             CCCCEEE
Q 047139          330 TSLEELS  336 (611)
Q Consensus       330 ~~L~~L~  336 (611)
                      ++|+.+.
T Consensus       275 ~~L~~i~  281 (699)
T KOG3665|consen  275 PNLQQIA  281 (699)
T ss_pred             ccHhhhh
Confidence            5555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00012  Score=65.44  Aligned_cols=103  Identities=23%  Similarity=0.288  Sum_probs=62.1

Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccCh-hHHhhc
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP-AWIGES  558 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~~  558 (611)
                      ....+||++|.+.++.      .+|    .++.|.+|.|++|+|+..-|.--.-+++|+.|.|.+|+|..... .-+.. 
T Consensus        43 ~~d~iDLtdNdl~~l~------~lp----~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-  111 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD------NLP----HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS-  111 (233)
T ss_pred             ccceecccccchhhcc------cCC----CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc-
Confidence            4556677777665433      222    26677777777777775555544555667777777777652111 12333 


Q ss_pred             CCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139          559 MPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH  593 (611)
Q Consensus       559 l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~  593 (611)
                      +|+|++|.+-+|+++..--   -.+..+++|++||.+.
T Consensus       112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777777777777763221   2345667777777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.46  E-value=4.1e-06  Score=82.56  Aligned_cols=305  Identities=20%  Similarity=0.141  Sum_probs=152.6

Q ss_pred             CCcEEEccCCCCCcc--CCcccCCCCCCcEEEccCCccc-ccCCCCc-cCcccCceEEecCC-ccccCCCc-CCCCCCCC
Q 047139          234 SLARLELGYNQLTGN--LPISLGYLKNLRYLELWYNSFL-GSIPPSL-GNLTFLEELYLTSN-QMNGKFPE-SFGQLSAI  307 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L  307 (611)
                      .|+.|.+.++.-.+.  +-....+++++++|.+.+|... +.--..+ ..+++|+.+++..| .++....+ ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            688888888764422  2223346888888888887522 1111112 35677888888775 34433222 23457788


Q ss_pred             CEEEccCCc-cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchh--ccCCCCCC
Q 047139          308 RVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW--LRNQTELT  384 (611)
Q Consensus       308 ~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--l~~~~~L~  384 (611)
                      ++++++.+. +++.-......+++.++.+.+.+|.-.... .+...-.....+.++++..|.......-|  -..+..|+
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888764 333222235566666766666654321110 00001111223445555555322211111  13456677


Q ss_pred             EEEccCcccc-cccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCC
Q 047139          385 TLVLNSASIS-DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDIS  463 (611)
Q Consensus       385 ~L~l~~n~l~-~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls  463 (611)
                      .++.+++... +..-..+....++|+.+.++.++--+..-....                  -   .+..  .|+.+++.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------------------~---rn~~--~Le~l~~e  354 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------------------G---RNCP--HLERLDLE  354 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------------------h---cCCh--hhhhhccc
Confidence            7777666432 222334444556666666666653211110000                  0   0111  12344445


Q ss_pred             CCeee--cccccchhccCCCCeEECcCCCCC-CCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCE
Q 047139          464 FNSIN--GSIPQSVGNLKQLLTLVISNNNLS-DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDS  539 (611)
Q Consensus       464 ~n~l~--~~~~~~l~~l~~L~~L~L~~n~i~-~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~  539 (611)
                      ++...  +.+...-.+++.|+.+.+++|... |.+.-.++    ..-..+..|+.+.|+++... ...-+.+..+++|+.
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            55432  112222245777888888877532 22111111    12233567788888888643 344456677778888


Q ss_pred             EECCCCc-CcccChhHHhhcCCCCcEEE
Q 047139          540 LDLGENQ-LSGNIPAWIGESMPSLSILR  566 (611)
Q Consensus       540 L~Ls~N~-l~~~ip~~l~~~l~~L~~L~  566 (611)
                      +++-+++ ++.+-...+..++|++++.-
T Consensus       431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  431 IELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             eeeechhhhhhhhhHHHHhhCccceehh
Confidence            8887775 33222233445577666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.27  E-value=0.00014  Score=80.02  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=59.4

Q ss_pred             CCCCCEEEccCCCCCCC-CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccC
Q 047139          153 ITNLLSLDLSSNDLQGD-IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECI  230 (611)
Q Consensus       153 l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~  230 (611)
                      +|.|++|.+.+-.+... .-....++++|+.||+|++.+ +. + ..++++++|+.|.+.+=.+.. ..-..+..++   
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~---  220 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK---  220 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cC-c-HHHhccccHHHHhccCCCCCchhhHHHHhccc---
Confidence            56666666666544321 122345666667777766663 21 1 556666666666666655543 2222333344   


Q ss_pred             CCCCCcEEEccCCCCCccC------CcccCCCCCCcEEEccCCccccc
Q 047139          231 NSSSLARLELGYNQLTGNL------PISLGYLKNLRYLELWYNSFLGS  272 (611)
Q Consensus       231 ~~~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~  272 (611)
                         +|+.||+|........      -+.-..+|+|+.||.++..+.+.
T Consensus       221 ---~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  221 ---KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             ---CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence               6777777665443211      11122467777777777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=2.1e-05  Score=73.51  Aligned_cols=101  Identities=26%  Similarity=0.279  Sum_probs=74.8

Q ss_pred             cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139          478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE  557 (611)
Q Consensus       478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  557 (611)
                      +.+.+.|+..+|.+.|++.          ...|+.|++|.||-|+|+..-  .+..|+.|+.|+|..|.|.+.---...+
T Consensus        18 l~~vkKLNcwg~~L~DIsi----------c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI----------CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCCCccHHHH----------HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            4567778888888877663          234778999999999998553  4778999999999999987322223334


Q ss_pred             cCCCCcEEECcCCcCcccCCcc-----ccCCCCCCEee
Q 047139          558 SMPSLSILRLRSNHFNGTIPSE-----LCKLSALHILD  590 (611)
Q Consensus       558 ~l~~L~~L~ls~n~l~~~~p~~-----l~~l~~L~~L~  590 (611)
                      ++|+|++|.|..|+-.|.-+..     +..+++|+.||
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            5899999999999988876654     34567777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00017  Score=67.32  Aligned_cols=62  Identities=27%  Similarity=0.387  Sum_probs=26.2

Q ss_pred             cCcccCceEEecCC--ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          278 GNLTFLEELYLTSN--QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       278 ~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      -.+++|+.|.++.|  .+.+.++.....+++|+++++++|++...-....+..+.+|..|++.+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFN  125 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhccc
Confidence            34444555555555  333333333333455555555555544211112233444444444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.94  E-value=0.0014  Score=56.36  Aligned_cols=124  Identities=16%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccCh
Q 047139          473 QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP  552 (611)
Q Consensus       473 ~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  552 (611)
                      .+|.++++|+.+.+.. .+..+....|.+        +++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~--------~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~   73 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSN--------CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIG   73 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT---------TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccc--------cccccccccccc-ccccceeeeecccccccccccc-ccc-ccc
Confidence            3567777888888764 455455444444        667888888775 5544456677887888888865 443 455


Q ss_pred             hHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139          553 AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT  611 (611)
Q Consensus       553 ~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~  611 (611)
                      ...+..+++|+.+++..+ +...-...|.+. .|+.+.+.. .+...-..+|.+.+.|+
T Consensus        74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            555555788888888765 554444556665 788887775 34333334576666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.85  E-value=2.5e-05  Score=77.15  Aligned_cols=85  Identities=18%  Similarity=0.064  Sum_probs=52.2

Q ss_pred             CCCcEEEccCCcccccCC--CCccCcccCceEEecCCc-cccCCCcCC-CCCCCCCEEEccCC-ccccccChhhhcCCCC
Q 047139          257 KNLRYLELWYNSFLGSIP--PSLGNLTFLEELYLTSNQ-MNGKFPESF-GQLSAIRVLELSDN-QWEGFITDAHLRNLTS  331 (611)
Q Consensus       257 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~  331 (611)
                      ..|+.|.+.++.-.+.-+  ..-.++++++.|.+.+|. ++......+ ..+++|++|++..+ .++...-......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357888888876433211  123467888888888885 332222222 35678888888884 3444333334557888


Q ss_pred             CCEEEcCccC
Q 047139          332 LEELSLIKTS  341 (611)
Q Consensus       332 L~~L~l~~~~  341 (611)
                      |+++++++|.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            8888888854

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.78  E-value=0.0065  Score=52.09  Aligned_cols=93  Identities=20%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++|+.+++..+ +.......|.+. .++.+.+.
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            4445554443 3323334455555666666654 333233344555666666666544 332333345555 66666665


Q ss_pred             CCccccccChhhhcCCCCC
Q 047139          314 DNQWEGFITDAHLRNLTSL  332 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L  332 (611)
                      .+ +.. ++...|.++++|
T Consensus       112 ~~-~~~-i~~~~F~~~~~l  128 (129)
T PF13306_consen  112 SN-ITK-IEENAFKNCTKL  128 (129)
T ss_dssp             TB--SS-----GGG-----
T ss_pred             CC-ccE-ECCccccccccC
Confidence            42 222 334456666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.002  Score=60.37  Aligned_cols=111  Identities=22%  Similarity=0.296  Sum_probs=77.1

Q ss_pred             cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC--cccccCcccccCCCCCCEEECCCCcCc
Q 047139          471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN--HLSGEIPPSLKNCSLMDSLDLGENQLS  548 (611)
Q Consensus       471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~  548 (611)
                      +....-.+..|+.+.+.+..++.+.      .+|.    +++|++|.+|.|  ++.+.++.-...+++|++|++++|+|.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~------~~P~----Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLT------NFPK----LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeecc------cCCC----cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            5555566677888888877776433      2343    789999999999  777777777778899999999999886


Q ss_pred             c--cChhHHhhcCCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139          549 G--NIPAWIGESMPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH  593 (611)
Q Consensus       549 ~--~ip~~l~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~  593 (611)
                      .  +++. +.. +.+|..|++.+|.-++.--   ..|.-+++|++||-..
T Consensus       105 ~lstl~p-l~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  105 DLSTLRP-LKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cccccch-hhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            2  2222 233 7788899999998775211   1234457777666443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00015  Score=67.93  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=39.5

Q ss_pred             CCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEc
Q 047139          258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL  337 (611)
Q Consensus       258 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  337 (611)
                      +.++|+..+|.+.+.  ....+++.|++|.|+-|+++..-  .+..+++|++|+|..|.|........+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            344455555554432  12334555555555555555322  24555556666666555554333344555555555555


Q ss_pred             Cc
Q 047139          338 IK  339 (611)
Q Consensus       338 ~~  339 (611)
                      ..
T Consensus        96 ~E   97 (388)
T KOG2123|consen   96 DE   97 (388)
T ss_pred             cc
Confidence            55

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0024  Score=35.67  Aligned_cols=19  Identities=53%  Similarity=0.670  Sum_probs=8.8

Q ss_pred             CCEeeccCCcCccCCCcccc
Q 047139          586 LHILDLSHNNLLGPIPYCVG  605 (611)
Q Consensus       586 L~~L~ls~n~l~g~iP~~~~  605 (611)
                      |++||+++|+++ .||..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444444444444 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.44  E-value=0.00015  Score=76.31  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             eeEEEecccccCccc----chhccCCCCCCEEEccCcccccc
Q 047139          359 LRYLVIRYYQLGPKF----PTWLRNQTELTTLVLNSASISDT  396 (611)
Q Consensus       359 L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~  396 (611)
                      +..+.+.+|.+....    ...+...+.|+.|++++|.+.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~  130 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE  130 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH
Confidence            666677777665432    23445566666666666666643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.40  E-value=0.0061  Score=34.02  Aligned_cols=19  Identities=37%  Similarity=0.641  Sum_probs=9.7

Q ss_pred             CcEEECcCCcCcccCCcccc
Q 047139          562 LSILRLRSNHFNGTIPSELC  581 (611)
Q Consensus       562 L~~L~ls~n~l~~~~p~~l~  581 (611)
                      |++|++++|+++ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.93  E-value=0.00062  Score=71.71  Aligned_cols=17  Identities=24%  Similarity=0.086  Sum_probs=9.6

Q ss_pred             CCcceeEEEecccccCc
Q 047139          355 PPFKLRYLVIRYYQLGP  371 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~  371 (611)
                      ..+.|+.|++++|.++.
T Consensus       113 t~~~L~~L~l~~n~l~~  129 (478)
T KOG4308|consen  113 TLPTLGQLDLSGNNLGD  129 (478)
T ss_pred             ccccHhHhhcccCCCcc
Confidence            34456666666666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.56  E-value=0.009  Score=64.18  Aligned_cols=62  Identities=18%  Similarity=0.079  Sum_probs=28.3

Q ss_pred             cccCceEEecCCc-cccCCCcCCC-CCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCccC
Q 047139          280 LTFLEELYLTSNQ-MNGKFPESFG-QLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       280 l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                      +++|+.|+++++. ++...-..+. .+++|+.|.+.++. ++...-......++.|++|++++|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3455555555554 3322212222 24556666555444 3333222334455556666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.26  E-value=0.051  Score=58.34  Aligned_cols=97  Identities=21%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             cchhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccccCccccc-CCCCCCEEECCCCc-Cc
Q 047139          473 QSVGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSGEIPPSLK-NCSLMDSLDLGENQ-LS  548 (611)
Q Consensus       473 ~~l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~  548 (611)
                      .....++.|+.|+++++ .......   . ........+++|+.|+++++. +++..-..+. .|++|+.|.+.+|. ++
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~---~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt  283 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSP---L-LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT  283 (482)
T ss_pred             HHHhhCchhheecccCcccccccch---h-HhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence            33456777888887763 1110000   0 011122335778888888877 5544333333 37788888877776 67


Q ss_pred             ccChhHHhhcCCCCcEEECcCCcCc
Q 047139          549 GNIPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       549 ~~ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      +..-..+...++.|++|++++|...
T Consensus       284 ~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  284 DEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhHHHHHHHhcCcccEEeeecCccc
Confidence            6666667767788888888877653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.26  E-value=0.083  Score=27.26  Aligned_cols=6  Identities=50%  Similarity=0.678  Sum_probs=2.1

Q ss_pred             EECcCC
Q 047139          565 LRLRSN  570 (611)
Q Consensus       565 L~ls~n  570 (611)
                      |+|++|
T Consensus         6 L~l~~n   11 (17)
T PF13504_consen    6 LDLSNN   11 (17)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.87  E-value=0.16  Score=29.46  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=11.4

Q ss_pred             CCCCEEECCCCcCcccChhHHh
Q 047139          535 SLMDSLDLGENQLSGNIPAWIG  556 (611)
Q Consensus       535 ~~L~~L~Ls~N~l~~~ip~~l~  556 (611)
                      ++|+.|+|++|+|+ .+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45556666666655 4555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.87  E-value=0.16  Score=29.46  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=11.4

Q ss_pred             CCCCEEECCCCcCcccChhHHh
Q 047139          535 SLMDSLDLGENQLSGNIPAWIG  556 (611)
Q Consensus       535 ~~L~~L~Ls~N~l~~~ip~~l~  556 (611)
                      ++|+.|+|++|+|+ .+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45556666666655 4555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.66  E-value=0.13  Score=29.21  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=7.7

Q ss_pred             CCCCEEECCCCcCcccCh
Q 047139          535 SLMDSLDLGENQLSGNIP  552 (611)
Q Consensus       535 ~~L~~L~Ls~N~l~~~ip  552 (611)
                      ++|++|+|++|+|++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            345555555555544433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=0.054  Score=48.98  Aligned_cols=82  Identities=18%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc-Cccccc-CCCCCCEEECCCC-cCcccChhHHh
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE-IPPSLK-NCSLMDSLDLGEN-QLSGNIPAWIG  556 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~N-~l~~~ip~~l~  556 (611)
                      .++.+|-+++.|...+-        +.+.++++++.|.+.+|.--+. --+-++ -.++|+.|++++| +||.....++.
T Consensus       102 ~IeaVDAsds~I~~eGl--------e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL--------EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             eEEEEecCCchHHHHHH--------HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence            35666666655442222        2233366666666666642211 000111 2356777777766 46666666666


Q ss_pred             hcCCCCcEEECcCC
Q 047139          557 ESMPSLSILRLRSN  570 (611)
Q Consensus       557 ~~l~~L~~L~ls~n  570 (611)
                      . +++|+.|.+.+=
T Consensus       174 ~-lknLr~L~l~~l  186 (221)
T KOG3864|consen  174 K-LKNLRRLHLYDL  186 (221)
T ss_pred             H-hhhhHHHHhcCc
Confidence            5 677777766543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.15  E-value=0.014  Score=53.62  Aligned_cols=84  Identities=17%  Similarity=0.163  Sum_probs=57.9

Q ss_pred             cCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139          510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL  589 (611)
Q Consensus       510 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  589 (611)
                      ....+.||++.|++- ..-..|..++.+..||++.|.+. ..|.+..+ ...++.+++..|..+ ..|.++...+.++.+
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            456677777777665 33345556666777777777776 66777665 667777777777776 677777777777777


Q ss_pred             eccCCcCc
Q 047139          590 DLSHNNLL  597 (611)
Q Consensus       590 ~ls~n~l~  597 (611)
                      ++..|++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.72  E-value=0.069  Score=48.32  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             ceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC-cccccCcccc
Q 047139          453 TKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN-HLSGEIPPSL  531 (611)
Q Consensus       453 ~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n-~l~~~~p~~l  531 (611)
                      ....++.+|-++..|...--+.+.+++.++.|.+.+|.-  +++-.+..--    +-.++|+.|++++| +|+...-..+
T Consensus        99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~--~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen   99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY--FDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccc--hhhHHHHHhc----ccccchheeeccCCCeechhHHHHH
Confidence            334456777788888877777788888899998888752  2221121100    12469999999988 6887777788


Q ss_pred             cCCCCCCEEECCCCc
Q 047139          532 KNCSLMDSLDLGENQ  546 (611)
Q Consensus       532 ~~l~~L~~L~Ls~N~  546 (611)
                      ..+++|+.|.+.+=.
T Consensus       173 ~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  173 LKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHhhhhHHHHhcCch
Confidence            999999999887754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.64  E-value=0.029  Score=51.65  Aligned_cols=82  Identities=20%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      ..+.||++.|++. .+-..+..++.+..++++.|.+. ..|..+++...++.+++..|..+ ..|.+++..++++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5566666666654 34455556677777888887776 67777888888888888877776 678888888888888888


Q ss_pred             CCccc
Q 047139          314 DNQWE  318 (611)
Q Consensus       314 ~n~l~  318 (611)
                      +|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.19  E-value=0.66  Score=26.24  Aligned_cols=20  Identities=35%  Similarity=0.315  Sum_probs=9.5

Q ss_pred             CCCCEEEccCcccccccchh
Q 047139          381 TELTTLVLNSASISDTLPSW  400 (611)
Q Consensus       381 ~~L~~L~l~~n~l~~~~p~~  400 (611)
                      ++|++|++++|++++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45556666666655444433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.56  E-value=1.1  Score=25.87  Aligned_cols=14  Identities=57%  Similarity=0.574  Sum_probs=9.5

Q ss_pred             CCCCEEECcCCccc
Q 047139          511 LTIRFLVLSNNHLS  524 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~  524 (611)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45677777777766

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.56  E-value=1.1  Score=25.87  Aligned_cols=14  Identities=57%  Similarity=0.574  Sum_probs=9.5

Q ss_pred             CCCCEEECcCCccc
Q 047139          511 LTIRFLVLSNNHLS  524 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~  524 (611)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45677777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	611
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		7e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 216/441 (48%), Gaps = 53/441 (12%)
Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFI--DGLSECINSSSLARLELGYNQLTGNL 249
           G++S  L  L +L+ L LS N  SG  V  ++  DG  E      L  L +  N+++G++
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE------LKHLAISGNKISGDV 194
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
            +S     NL +L++  N+F   IP  LG+ + L+ L ++ N+++G F  +    + +++
Sbjct: 195 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS-----------------LSFNISFD 352
           L +S NQ+ G I    L+   SL+ LSL +   +                  LS N  + 
Sbjct: 252 LNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 353 WIPPF-----KLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
            +PPF      L  L +       + P   L     L  L L+    S  LP     L+ 
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 407 TLDELDVGGNHLSGRIPNTLVFRFPGSVD---LSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
           +L  LD+  N+ SG I   L      ++    L +N F G IP   SN ++L    L +S
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV--SLHLS 426
Query: 464 FNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHL 523
           FN ++G+IP S+G+L +L  L +              GEIP+ +  + T+  L+L  N L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELMYVKTLETLILDFNDL 478
Query: 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583
           +GEIP  L NC+ ++ + L  N+L+G IP WIG  + +L+IL+L +N F+G IP+EL   
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDC 537
Query: 584 SALHILDLSHNNLLGPIPYCV 604
            +L  LDL+ N   G IP  +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAM 558

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 143/331 (43%), Gaps = 46/331 (13%)
Query: 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
           +L+++ +NG     F   +++  L+LS N   G +T   L +L S   L  +  S+++L 
Sbjct: 83  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVT--TLTSLGSCSGLKFLNVSSNTLD 139
Query: 347 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
           F        P K+          G K      N  E+  L  NS S ++ +  W L    
Sbjct: 140 F--------PGKVSG--------GLKL-----NSLEVLDLSANSISGANVV-GWVLSDGC 177
Query: 407 -TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
             L  L + GN +SG +  +        +D+SSN F   IP          L+ LDIS N
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLE-FLDVSSNNFSTGIPFLGDCSA---LQHLDISGN 233
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXX--------------XXXXXXXXGEIPESI-GSL 510
            ++G   +++    +L  L I                            GEIP+ + G+ 
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
            T+  L LS NH  G +PP   +CSL++SL L  N  SG +P      M  L +L L  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 571 HFNGTIPSELCKLSA-LHILDLSHNNLLGPI 600
            F+G +P  L  LSA L  LDLS NN  GPI
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 216/441 (48%), Gaps = 53/441 (12%)
Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFI--DGLSECINSSSLARLELGYNQLTGNL 249
           G++S  L  L +L+ L LS N  SG  V  ++  DG  E      L  L +  N+++G++
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE------LKHLAISGNKISGDV 191
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
            +S     NL +L++  N+F   IP  LG+ + L+ L ++ N+++G F  +    + +++
Sbjct: 192 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS-----------------LSFNISFD 352
           L +S NQ+ G I    L+   SL+ LSL +   +                  LS N  + 
Sbjct: 249 LNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 353 WIPPF-----KLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
            +PPF      L  L +       + P   L     L  L L+    S  LP     L+ 
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 407 TLDELDVGGNHLSGRIPNTLVFRFPGSVD---LSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
           +L  LD+  N+ SG I   L      ++    L +N F G IP   SN ++L    L +S
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV--SLHLS 423
Query: 464 FNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHL 523
           FN ++G+IP S+G+L +L  L +              GEIP+ +  + T+  L+L  N L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELMYVKTLETLILDFNDL 475
Query: 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583
           +GEIP  L NC+ ++ + L  N+L+G IP WIG  + +L+IL+L +N F+G IP+EL   
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDC 534
Query: 584 SALHILDLSHNNLLGPIPYCV 604
            +L  LDL+ N   G IP  +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAM 555

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 143/331 (43%), Gaps = 46/331 (13%)
Query: 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
           +L+++ +NG     F   +++  L+LS N   G +T   L +L S   L  +  S+++L 
Sbjct: 80  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLD 136
Query: 347 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
           F        P K+          G K      N  E+  L  NS S ++ +  W L    
Sbjct: 137 F--------PGKVSG--------GLKL-----NSLEVLDLSANSISGANVV-GWVLSDGC 174
Query: 407 -TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
             L  L + GN +SG +  +        +D+SSN F   IP          L+ LDIS N
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLE-FLDVSSNNFSTGIPFLGDCSA---LQHLDISGN 230
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXX--------------XXXXXXXXGEIPESI-GSL 510
            ++G   +++    +L  L I                            GEIP+ + G+ 
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
            T+  L LS NH  G +PP   +CSL++SL L  N  SG +P      M  L +L L  N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 571 HFNGTIPSELCKLSA-LHILDLSHNNLLGPI 600
            F+G +P  L  LSA L  LDLS NN  GPI
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 408 LDELDVGG-NHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
           L+ L +GG N+L G IP  +        + ++     G IP + S +  L    LD S+N
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV--TLDFSYN 135
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTI-RFLVLSNNHLS 524
           +++G++P S+ +L  L+ +                G IP+S GS   +   + +S N L+
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRIS--------GAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 525 GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI-------------------- 564
           G+IPP+  N +L   +DL  N L G+     G    +  I                    
Sbjct: 188 GKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 565 --LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
             L LR+N   GT+P  L +L  LH L++S NNL G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 503 IPESIGSLLTIRFLVLSN-NHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS 561
           IP S+ +L  + FL +   N+L G IPP++   + +  L +    +SG IP ++ + + +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKT 126
Query: 562 LSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
           L  L    N  +GT+P  +  L  L  +    N + G IP   G FS +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
           L NL+TL ++ N+         D L       +LA L L  NQL    P     L  L Y
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 262 LELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQWEG 319
           L L YN  L S+P  +   LT L+EL L +NQ+  + PE +F +L+ ++ L+L +NQ + 
Sbjct: 138 LSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 320 FITDAHLRNLTSLEELSLIK 339
               A      SLE+L +++
Sbjct: 196 VPEGA----FDSLEKLKMLQ 211

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
           F    +++N+ +L   +TL +SLN  +    D       C  + S+  L L  N LTG++
Sbjct: 393 FKVALMTKNMSSL---ETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSNMLTGSV 444
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
              L     ++ L+L +N+ + SIP  + +L  L+EL + SNQ+       F +L++++ 
Sbjct: 445 FRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Query: 310 LELSDNQWE 318
           + L DN W+
Sbjct: 502 IWLHDNPWD 510

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
           L  L  L  LKL  NQ S         +S     ++L  LEL  NQL    PIS   LKN
Sbjct: 256 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 305
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
           L YL L++N+ +  I P + +LT L+ L+ ++N+++     S   L+ I  L    NQ  
Sbjct: 306 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQIS 361
Query: 319 GFITDAHLRNLTSL 332
                A+L  +T L
Sbjct: 362 DLTPLANLTRITQL 375

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
           L  L  L  LKL  NQ S         +S     ++L  LEL  NQL    PIS   LKN
Sbjct: 257 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 306
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
           L YL L++N+ +  I P + +LT L+ L+ ++N+++     S   L+ I  L    NQ  
Sbjct: 307 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQIS 362
Query: 319 GFITDAHLRNLTSL 332
                A+L  +T L
Sbjct: 363 DLTPLANLTRITQL 376

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
           L  L  L  LKL  NQ S         +S     ++L  LEL  NQL    PIS   LKN
Sbjct: 260 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 309
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
           L YL L++N+ +  I P + +LT L+ L+  +N+++     S   L+ I  L    NQ  
Sbjct: 310 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 365
Query: 319 GFITDAHLRNLTSL 332
                A+L  +T L
Sbjct: 366 DLTPLANLTRITQL 379

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	611
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-121
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  376 bits (969), Expect = e-121
 Identities = 165/597 (27%), Positives = 258/597 (43%), Gaps = 84/597 (14%)

Query: 37  SGCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRD 95
           S     E   L+ FK  L D    L  W   ++ C++ GV C +    +  ++L++    
Sbjct: 7   SQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKP-- 61

Query: 96  SFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF-------------KVLDLSNNGF 142
                    ++     +S SLL L  LE L LS ++                LDLS N  
Sbjct: 62  ---------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 143 NSTLP--HWLFNITNLLSLDLSSNDLQGDIPD-GFSSLNSLQLLDLSGNSFLEGQLSRNL 199
           +  +     L + + L  L++SSN L       G   LNSL++LDLS NS + G      
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGW 171

Query: 200 ---GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL 256
                   L+ L +S N+ SG+V              +L  L++  N  +  +P  LG  
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVDVS--------RCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
             L++L++  N   G    ++   T L+ L ++SNQ  G  P     L +++ L L++N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 317 WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
           + G I D       +L  L L   S +     +                        P +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDL---SGNHFYGAV------------------------PPF 313

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SV 434
             + + L +L L+S + S  LP   L     L  LD+  N  SG +P +L        ++
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDM 494
           DLSSN F GPI        K  L++L +  N   G IP ++ N  +L++L +S N     
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY---- 429

Query: 495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554
                SG IP S+GSL  +R L L  N L GEIP  L     +++L L  N L+G IP+ 
Sbjct: 430 ----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
           +  +  +L+ + L +N   G IP  + +L  L IL LS+N+  G IP  +GD  ++ 
Sbjct: 486 LS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  311 bits (798), Expect = 2e-96
 Identities = 150/540 (27%), Positives = 236/540 (43%), Gaps = 65/540 (12%)

Query: 113 SPSLLQLKDLEYLDLSLNNF-----------------KVLDLSNNGFNSTLPHWLFNITN 155
               L+L  LE LDLS N+                  K L +S N  +  +   +    N
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201

Query: 156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215
           L  LD+SSN+    IP      ++LQ LD+SGN  L G  SR + T   L+ L +S NQF
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQF 259

Query: 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIP 274
            G +              SL  L L  N+ TG +P  L G    L  L+L  N F G++P
Sbjct: 260 VGPIPPL--------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 275 PSLGNLTFLEELYLTSNQMNGKFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE 333
           P  G+ + LE L L+SN  +G+ P ++  ++  ++VL+LS N++ G + ++      SL 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 334 ELSLIKTSNSSLSFNI--SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
            L L   S+++ S  I  +    P   L+ L ++      K P  L N +EL +L L+  
Sbjct: 372 TLDL---SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWS 449
            +S T+PS    L+  L +L +  N L G IP  L        ++ L  N   G IP   
Sbjct: 429 YLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGL 486

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------D 493
           SN T L    + +S N + G IP+ +G L+ L  L +SNN+ S                D
Sbjct: 487 SNCTNLNW--ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN--QLSGNI 551
           +  N F+G IP ++          ++ N ++G+    +KN  +        N  +  G  
Sbjct: 545 LNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 552 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
              +   + + +   + S  + G          ++  LD+S+N L G IP  +G    + 
Sbjct: 601 SEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (745), Expect = 8e-89
 Identities = 141/504 (27%), Positives = 214/504 (42%), Gaps = 73/504 (14%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFN 152
             G I P    LK L+YL L+ N F                 LDLS N F   +P +  +
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 153 ITNLLSLDLSSNDLQGDIP-DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLC-NLQTLKL 210
            + L SL LSSN+  G++P D    +  L++LDLS N    G+L  +L  L  +L TL L
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDL 375

Query: 211 SLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 270
           S N FSG +   +         ++L  L L  N  TG +P +L     L  L L +N   
Sbjct: 376 SSNNFSGPILPNLCQNP----KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 271 GSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
           G+IP SLG+L+ L +L L  N + G+ P+    +  +  L L  N   G I    L N T
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCT 490

Query: 331 SLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNS 390
           +L  +SL   SN+ L+                       G   P W+     L  L L++
Sbjct: 491 NLNWISL---SNNRLT-----------------------GE-IPKWIGRLENLAILKLSN 523

Query: 391 ASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSS 450
            S S  +P+       +L  LD+  N  +G IP  +   F  S  +++N   G   ++  
Sbjct: 524 NSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM---FKQSGKIAANFIAGKRYVYIK 579

Query: 451 NLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DM 494
           N           +     G   + +  L       I++                    DM
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554
           + N  SG IP+ IGS+  +  L L +N +SG IP  + +   ++ LDL  N+L G IP  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 555 IGESMPSLSILRLRSNHFNGTIPS 578
           +  ++  L+ + L +N+ +G IP 
Sbjct: 700 MS-ALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  269 bits (690), Expect = 8e-81
 Identities = 136/512 (26%), Positives = 205/512 (40%), Gaps = 114/512 (22%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFN 152
             G + P       LE L LS NNF               KVLDLS N F+  LP  L N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 153 IT-NLLSLDLSSNDLQGDIPD--GFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLK 209
           ++ +LL+LDLSSN+  G I      +  N+LQ L L  N F  G++   L     L +L 
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLH 424

Query: 210 LSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
           LS N  SG +   +       + S L  L+L  N L G +P  L Y+K L  L L +N  
Sbjct: 425 LSFNYLSGTIPSSL------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
            G IP  L N T L  + L++N++ G+ P+  G+L  + +L+LS+N + G I        
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-------- 530

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
                                                       P  L +   L  L LN
Sbjct: 531 --------------------------------------------PAELGDCRSLIWLDLN 546

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
           +   + T+P+   +         +  N ++G+    +                       
Sbjct: 547 TNLFNGTIPAAMFKQ-----SGKIAANFIAGKRYVYI----------------------- 578

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509
            N           +     G   + +  L              ++T+  + G    +  +
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC--------NITSRVYGGHTSPTFDN 630

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
             ++ FL +S N LSG IP  + +   +  L+LG N +SG+IP  +G  +  L+IL L S
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSS 689

Query: 570 NHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
           N  +G IP  +  L+ L  +DLS+NNL GPIP
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (387), Expect = 3e-39
 Identities = 83/338 (24%), Positives = 126/338 (37%), Gaps = 56/338 (16%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNI 153
           L G I  SL  L  L  L L LN                + L L  N     +P  L N 
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           TNL  + LS+N L G+IP     L +L +L LS NSF  G +   LG   +L  L L+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTN 548

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN--SFLG 271
            F+G +   +   S           ++  N + G   + +      +      N   F G
Sbjct: 549 LFNGTIPAAMFKQS----------GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
                L  L+      +TS    G    +F    ++  L++S N   G+I    + ++  
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPY 657

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
           L  L+L    ++ +S +I                        P  + +   L  L L+S 
Sbjct: 658 LFILNL---GHNDISGSI------------------------PDEVGDLRGLNILDLSSN 690

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR 429
            +   +P     L   L E+D+  N+LSG IP    F 
Sbjct: 691 KLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPEMGQFE 727

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (559), Expect = 6e-63
 Identities = 116/530 (21%), Positives = 183/530 (34%), Gaps = 48/530 (9%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWL--F 151
           ++   +   ++ K+L  LDLS N                + L LSNN   +     L  F
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCN---LQTL 208
             ++L  L+LSSN ++   P  F ++  L  L L+    L   L+  L        ++ L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNL 227

Query: 209 KLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS 268
            LS +Q S   +    GL      ++L  L+L YN L      S  +L  L Y  L YN+
Sbjct: 228 SLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 269 FLGSIPPSLGNLTFLEELYLTSNQMNGKF---------PESFGQLSAIRVLELSDNQWEG 319
                  SL  L  +  L L  +                 SF  L  +  L + DN   G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 320 FITDAHLRNLTSLEELSLIKTSNSSLSF----NISFDWIPPFKLRYLVIRYYQLGPKFPT 375
             ++     L +L+ LSL   SNS  S     N +F  +    L  L +   ++      
Sbjct: 344 IKSNM-FTGLINLKYLSL---SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 376 WLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSV 434
                  L  L L    I   L     +    + E+ +  N       N+         +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 435 DLSSNRFEG--PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
            L     +     P     L  L    LD+S N+I       +  L++L  L + +NNL+
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNL--TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 552
            +  +   G     +  L  +  L L +N          K+   +  +DLG N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 553 AWIGESMPSLSILRLRSNHFNGTIPSELCK-LSALHILDLSHNNLLGPIP 601
           +    +  SL  L L+ N                L  LD+  N       
Sbjct: 578 SVFN-NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  215 bits (550), Expect = 1e-61
 Identities = 106/528 (20%), Positives = 171/528 (32%), Gaps = 64/528 (12%)

Query: 122 LEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDI 170
            E  D S                VL+L++N             + L SLD+  N +    
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 171 PDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI 230
           P+    L  L++L+L  N  L     +      NL  L L  N      ++         
Sbjct: 66  PELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK--- 121

Query: 231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG--NLTFLEELYL 288
              +L  L+L +N L+     +   L+NL+ L L  N         L     + L++L L
Sbjct: 122 ---NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 289 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDA--HLRNLTSLEELSLIKTSNSSLS 346
           +SNQ+    P  F  +  +  L L++ Q    +T+        TS+  LSL  +  S+ S
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 347 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
            N +F  +    L  L + Y  L            +L    L   +I          L  
Sbjct: 239 -NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF- 296

Query: 407 TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNS 466
            +  L++  +                   +S              L  L    L++  N 
Sbjct: 297 NVRYLNLKRSFTKQ--------------SISLASLPKIDDFSFQWLKCL--EHLNMEDND 340

Query: 467 INGSIPQSVGNLKQLLTLVISNNNLS--------------------DMTNNNFSGEIPES 506
           I G        L  L  L +SN+  S                    ++T N  S    ++
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 507 IGSLLTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
              L  +  L L  N +  E+     +    +  + L  N+            +PSL  L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRL 459

Query: 566 RLRSNHFNG--TIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            LR        + PS    L  L ILDLS+NN+       +     + 
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (535), Expect = 2e-59
 Identities = 97/482 (20%), Positives = 167/482 (34%), Gaps = 36/482 (7%)

Query: 131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           + +V D S+    + +P  L   TN+  L+L+ N L+      F+  + L  LD+  N+ 
Sbjct: 5   SHEVADCSHLKL-TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
           +          L  L+ L L  N+ S                ++L  L L  N +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC------TNLTELHLMSNSIQKIKN 114

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFG--QLSAIR 308
                 KNL  L+L +N    +   +   L  L+EL L++N++     E       S+++
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368
            LELS NQ + F        +  L  L L                +    +R L +   Q
Sbjct: 175 KLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 369 LGPKFPTWLRN--QTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
           L     T       T LT L L+  +++      F  L   L+   +  N++     ++L
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSL 292

Query: 427 ----------VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG 476
                     + R      +S              L    L  L++  N I G       
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--LEHLNMEDNDIPGIKSNMFT 350

Query: 477 NLKQLLTLVISNNNLS--DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNC 534
            L  L  L +SN+  S   +TN  F             +  L L+ N +S     +    
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSP------LHILNLTKNKISKIESDAFSWL 404

Query: 535 SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 594
             ++ LDLG N++   +       + ++  + L  N +     +    + +L  L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 595 NL 596
            L
Sbjct: 465 AL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (532), Expect = 4e-59
 Identities = 113/536 (21%), Positives = 183/536 (34%), Gaps = 59/536 (11%)

Query: 107 ELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFN 152
            +         +L  L+ L+L  N                  L L +N       +    
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 153 ITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCN--LQTLKL 210
             NL++LDLS N L          L +LQ L LS N  ++   S  L    N  L+ L+L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLEL 178

Query: 211 SLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGY---LKNLRYLELWYN 267
           S NQ           +        L  L L   QL  +L   L       ++R L L  +
Sbjct: 179 SSNQIKEFSPGCFHAI------GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 268 SFLGSIPPSLGNLTF--LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
               +   +   L +  L  L L+ N +N    +SF  L  +    L  N  +   + + 
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS- 291

Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIPPF------KLRYLVIRYYQLGPKFPTWLRN 379
           L  L ++  L+L ++         S   I  F       L +L +    +          
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 380 QTELTTLVL--NSASISDTLPSWFLQLNLT-LDELDVGGNHLSGRIPNTLVFRFPGS--- 433
              L  L L  +  S+       F+ L  + L  L++  N +S    +   F + G    
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLEV 409

Query: 434 VDLSSNRFEGPIPLWS-SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
           +DL  N     +       L    + ++ +S+N        S   +  L  L++    L 
Sbjct: 410 LDLGLNEIGQELTGQEWRGLEN--IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS---- 548
           ++         P     L  +  L LSNN+++      L+    ++ LDL  N L+    
Sbjct: 468 NVD------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 549 ---GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
                 P +  + +  L IL L SN F+         L  L I+DL  NNL     
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  193 bits (492), Expect = 2e-53
 Identities = 84/432 (19%), Positives = 146/432 (33%), Gaps = 23/432 (5%)

Query: 179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARL 238
           S ++ D S     +  +  +L T  N+  L L+ NQ     +      S       L  L
Sbjct: 5   SHEVADCSHLKLTQ--VPDDLPT--NITVLNLTHNQLRRLPAANFTRYS------QLTSL 54

Query: 239 ELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP 298
           ++G+N ++   P     L  L+ L L +N        +    T L EL+L SN +     
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFK 358
             F +   +  L+LS N             L +L+EL L      +L      D      
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSE-ELDIFANSS 172

Query: 359 LRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQL--NLTLDELDVGGN 416
           L+ L +   Q+    P        L  L LN+  +  +L         N ++  L +  +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 417 HLSGRIPNTLVFRFPGS---VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473
            LS     T +     +   +DLS N          + L +  L    + +N+I      
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ--LEYFFLEYNNIQHLFSH 290

Query: 474 SVGNLKQLLTLVISNNNLS-DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLK 532
           S+  L  +  L +  +     ++  +       S   L  +  L + +N + G       
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 533 NCSLMDSLDLGENQLSGNIP---AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589
               +  L L  +  S        ++  +   L IL L  N  +         L  L +L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 590 DLSHNNLLGPIP 601
           DL  N +   + 
Sbjct: 411 DLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (372), Expect = 2e-37
 Identities = 78/374 (20%), Positives = 135/374 (36%), Gaps = 22/374 (5%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
           ++   S SL  L ++ YL+L   +F    +S              +  L  L++  ND+ 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLK-RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 168 GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG---TLCNLQTLKLSLNQFSGEVSDFID 224
           G   + F+ L +L+ L LS +      L+           L  L L+ N+ S   SD   
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 225 GLSECINSSSLARLELGYNQLTGNLPIS-LGYLKNLRYLELWYNSFLGSIPPSLGNLTFL 283
            L        L  L+LG N++   L       L+N+  + L YN +L     S   +  L
Sbjct: 403 WLG------HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 284 EELYLTSNQMNG--KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS 341
           + L L    +      P  F  L  + +L+LS+N       D  L  L  LE L L   +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHNN 515

Query: 342 NSSLSFNISFDWIPPF-----KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDT 396
            + L  + +      F      L  L +             ++  EL  + L   +++  
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 397 LPSWFLQLNLTLDELDVGGNHLSGRIPNTL--VFRFPGSVDLSSNRFEGPIPLWSSNLTK 454
             S F     +L  L++  N ++          FR    +D+  N F+      +  +  
Sbjct: 576 PASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

Query: 455 LYLRDLDISFNSIN 468
           +     +I   S +
Sbjct: 635 INETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 106 HELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLF 151
           H   G     L  L  L  L+L  N F              K++DL  N  N+       
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 152 NITNLLSLDLSSNDLQGDIPDGFS-SLNSLQLLDLSGNSF 190
           N  +L SL+L  N +       F  +  +L  LD+  N F
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (547), Expect = 1e-61
 Identities = 86/611 (14%), Positives = 184/611 (30%), Gaps = 120/611 (19%)

Query: 43  EREALLQFKQNLTDPSGRLSSWVGEDCCSWR------------GVGCNNRTGSIIMLNLN 90
           +  AL +    L   +     +  +   +W             GV  N+  G +  L+L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLE 89

Query: 91  NPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKV---------------- 134
                              G++  ++ QL +LE L L  +  KV                
Sbjct: 90  G--------------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 135 --LDLSNNGFNSTLPHWLF--NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
                    +  T   +    + ++L+   ++S+  Q  I            +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
               +S+ +  L  L+   +  + F  E               +       Y Q      
Sbjct: 196 --TFVSKAVMRLTKLRQFYMGNSPFVAE-----------NICEAWENENSEYAQQYKTED 242

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM--------NGKFPESFG 302
           +    LK+L  +E++    L  +P  L  L  ++ + +  N+         + +      
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
               I+++ +  N  + F  +  L+ +  L  L       + L                 
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC---LYNQLE---------------- 343

Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
                           ++ +L +L L    I+  +P+ F      ++ L    N L   I
Sbjct: 344 ---------GKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 423 PNTLVFRFPGS---VDLSSNRFEG-------PIPLWSSNLTKLYLRDLDISFNSINGSIP 472
           PN    +       +D S N           P+           +  +++S N I+    
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--VSSINLSNNQISKFPK 450

Query: 473 QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLK 532
           +       L ++ +  N L+++  N+      E+  +   +  + L  N L+  +    +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

Query: 533 NCSL--MDSLDLGENQLSGNIPAWIG-----ESMPSLSILRLRSNHFNGTIPSELCKLSA 585
             +L  +  +DL  N  S   P         +     +    + N      P  +    +
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 586 LHILDLSHNNL 596
           L  L +  N++
Sbjct: 568 LTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (483), Expect = 1e-52
 Identities = 80/505 (15%), Positives = 164/505 (32%), Gaps = 99/505 (19%)

Query: 112 ISPSLLQLKDLEYLDLSLNNF---------KVLDLSNNGFNSTLPHWLFNITNLLSLDLS 162
           +S ++++L  L    +  + F         +  +        T      N+ +L  +++ 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 163 SNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222
           +      +P    +L  +QL++++ N  + G+  ++                        
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--------------------- 296

Query: 223 IDGLSECINSSSLARLELGYNQL-TGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281
              L++      +  + +GYN L T  +  SL  +K L  LE  YN   G   P+ G+  
Sbjct: 297 --ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEI 353

Query: 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS 341
            L  L L  NQ+        G    +  L  + N+ +        ++++ +  +      
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF---- 409

Query: 342 NSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWF 401
               S+N     +       L                    ++++ L++  IS      F
Sbjct: 410 ----SYN-EIGSVDGKNFDPL-----------DPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 402 LQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV---------DLSSNRFEG-PIPLWSSN 451
              +  L  +++ GN L+  IP   +     +          DL  N+         ++ 
Sbjct: 454 STGS-PLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 452 LTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLL 511
           L  L    +D+S+NS +   P    N   L    I N    D   N    E PE I    
Sbjct: 512 LPYLVG--IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--DAQGNRTLREWPEGITLCP 566

Query: 512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 571
           ++  L + +N +   +   +                            P++S+L ++ N 
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI---------------------------TPNISVLDIKDNP 598

Query: 572 FNGTIPSELCKLSALHILDLSHNNL 596
                 S +C      +  L ++  
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  166 bits (423), Expect = 2e-44
 Identities = 55/471 (11%), Positives = 130/471 (27%), Gaps = 94/471 (19%)

Query: 149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 208
            L +   +  L L      G +PD    L  L++L L  +     +       +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 209 KLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS 268
           +            F+D      + S L +  +  +    ++  S         +    N+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRN 328
            +  +  ++  LT L + Y+ ++    +                                
Sbjct: 195 -ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW-------------------------E 228

Query: 329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388
             + E     KT +                                    N  +LT + +
Sbjct: 229 NENSEYAQQYKTEDLKWD--------------------------------NLKDLTDVEV 256

Query: 389 NSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLW 448
            +      LP++   L   +  ++V  N           ++      +            
Sbjct: 257 YNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEK--------- 306

Query: 449 SSNLTKLYLRDLDISFNSI-NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI 507
                   ++ + I +N++    +  S+  +K+L  L    N L              + 
Sbjct: 307 --------IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---------GKLPAF 349

Query: 508 GSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
           GS + +  L L+ N ++            +++L    N+L      +  +S+  +S +  
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 568 RSNHFNG-------TIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
             N            +     K   +  ++LS+N +           S ++
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (346), Expect = 3e-34
 Identities = 61/410 (14%), Positives = 132/410 (32%), Gaps = 61/410 (14%)

Query: 110 GKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ-G 168
            K+   L  L +++ ++++ N     +   + + +           +  + +  N+L+  
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA--LADAPVGEKIQIIYIGYNNLKTF 320

Query: 169 DIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228
            +      +  L +L+   N           G+   L +L L+ NQ +   ++F      
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASLNLAYNQITEIPANF------ 372

Query: 229 CINSSSLARLELGYNQLTGNLP--ISLGYLKNLRYLELWYNSF-------LGSIPPSLGN 279
           C  +  +  L   +N+L   +P       +  +  ++  YN            + P+   
Sbjct: 373 CGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH------LRNLTSLE 333
              +  + L++NQ++    E F   S +  + L  N       ++        +N   L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 334 ELSLIKTSN--SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
            + L    N  + LS +     +P   L  + + Y     KFPT   N + L    +   
Sbjct: 492 SIDL--RFNKLTKLSDDFRATTLP--YLVGIDLSYNSFS-KFPTQPLNSSTLKGFGI--- 543

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWS 449
                            ++ D  GN      P  +    P    + + SN         +
Sbjct: 544 ----------------RNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNF 499
            N++ L     DI  N         V    +    ++  +   D+   + 
Sbjct: 587 PNISVL-----DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (285), Expect = 1e-26
 Identities = 42/345 (12%), Positives = 98/345 (28%), Gaps = 72/345 (20%)

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
            + +      SL +   +  L L     +G+ P++ GQL+ + VL L  +  +       
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTT 385
            + +++       +            D+ P                       + ++L  
Sbjct: 126 PKGISANMSDEQKQKMRMHYQ-KTFVDYDP---------------------REDFSDLIK 163

Query: 386 LVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPI 445
             +NS     ++     ++ L   ++    N+++                         +
Sbjct: 164 DCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF------------------------V 198

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
                 LTKL  R   +  +             +                          
Sbjct: 199 SKAVMRLTKL--RQFYMGNSPFVAENICEAWENENS-------------EYAQQYKTEDL 243

Query: 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL--------SGNIPAWIGE 557
              +L  +  + + N     ++P  LK    M  +++  N+              A    
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP- 302

Query: 558 SMPSLSILRLRSNHF-NGTIPSELCKLSALHILDLSHNNLLGPIP 601
               + I+ +  N+     + + L K+  L +L+  +N L G +P
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  214 bits (546), Expect = 4e-60
 Identities = 98/606 (16%), Positives = 201/606 (33%), Gaps = 109/606 (17%)

Query: 49  QFKQNLTDPSGRLSSW-VGEDCCSWR---GVGCNNRTGSIIMLNLNNPFRDSFDSYEDDA 104
           ++     + +    +W   ++   W    GV  +N  G +  L+L               
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAG------------- 332

Query: 105 VHELRGKISPSLLQLKDLEYLDLSLNNFKV-----------LDLSNNGFNSTLPHW---- 149
               +G++  ++ QL +L+ L    ++  V            D+S    +    H+    
Sbjct: 333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 150 LFNITNLLSLDLSSNDLQGD---IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQ 206
           L     L   DL  + +  +    P    S  SL+   +   +     +S+ +  L  LQ
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451

Query: 207 TLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWY 266
            +  + + F+ +             +         Y +   N  +S   LK+L  +EL+ 
Sbjct: 452 IIYFANSPFTYD-----------NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 267 NSFLGSIPPSLGNLTFLEELYLTSNQMNG---------KFPESFGQLSAIRVLELSDNQW 317
              +  +P  L +L  L+ L +  N+            +  +       I++  +  N  
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF----KLRYLVIRYYQLGPKF 373
           E F   A L+ +  L  L      ++ +        +  F    KL  L + Y Q+    
Sbjct: 561 EEFPASASLQKMVKLGLLDC---VHNKVRH------LEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 374 PTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT-LDELDVGGNHLSGRIPNTLVFRFPG 432
             +     ++  L  +   +   +P+ F   ++  +  +D   N +     N        
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 433 ------SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI-------NGSIPQSVGNLK 479
                 +V LS N  +       +  + +    + +S N +             +  N  
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPI--STIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 480 QLLTLVISNNNLSDMTNNNFSGEIPESI--GSLLTIRFLVLSNNHLSGEIPPSLKNCS-- 535
            L T+ +  N L+          + +     +L  +  + +S N  S   P    N S  
Sbjct: 729 LLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL 778

Query: 536 ----LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDL 591
               +    D   N++    P  I  + PSL  L++ SN     +  +L     L+ILD+
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDI 834

Query: 592 SHNNLL 597
           + N  +
Sbjct: 835 ADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (415), Expect = 1e-42
 Identities = 74/462 (16%), Positives = 153/462 (33%), Gaps = 50/462 (10%)

Query: 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP 171
           IS ++ +L  L+ +  + + F   +++                +    +        +  
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIA---------------VDWEDANSDYAKQYENEE 484

Query: 172 DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS---E 228
             +S+L  L  ++L     +  QL   L  L  LQ+L ++ N+         D      +
Sbjct: 485 LSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 229 CINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELY 287
                 +    +GYN L       SL  +  L  L+  +N        + G    L +L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLK 601

Query: 288 LTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSF 347
           L  NQ+     +       +  L  S N+ +      + +++  +  +        S   
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 348 NI--SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
           NI  S D         + + Y ++           + ++T++L++  ++    +     +
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 406 LT------LDELDVGGNHLSGRIPNTLVFRFPGS---VDLSSNRFEG-PIPLWS-SNLTK 454
                   L  +D+  N L+  + +            +D+S N F   P    + S L  
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 455 LYLRD-LDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTI 513
             +R   D   N I    P  +     L+ L I +N++          ++ E +   L I
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR---------KVDEKLTPQLYI 831

Query: 514 RFLVLSNNHL-SGEIPPSLKNCSL-MDSLDLGENQLSGNIPA 553
             L +++N   S ++          M  L   + Q      A
Sbjct: 832 --LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (401), Expect = 6e-41
 Identities = 73/507 (14%), Positives = 149/507 (29%), Gaps = 61/507 (12%)

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
            +   + +       L N   +  L L+    +G +PD    L  L++L    +S     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG 254
                  L    + +            F+D       S  L        ++      S  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG------------------- 295
            LK+ +   L   + +  I  ++  LT L+ +Y  ++                       
Sbjct: 424 SLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355
               S+  L  +  +EL +      + D  L +L  L+ L        +++ N       
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSL--------NIACN------- 525

Query: 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG 415
             +             +         ++    +   ++ +   S  LQ  + L  LD   
Sbjct: 526 --RGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 416 NHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ-- 473
           N +   +           + L  N+ E  IP      T   +  L  S N +   IP   
Sbjct: 583 NKVRH-LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQ-VEGLGFSHNKLK-YIPNIF 638

Query: 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKN 533
           +  ++  + ++  S N +     N             +    + LS N +          
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISC---SMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 534 CSLMDSLDLGENQLS-------GNIPAWIGESMPSLSILRLRSNHFNGTIPSEL--CKLS 584
            S + ++ L  N ++                +   L+ + LR N    ++  +     L 
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYK-NTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 585 ALHILDLSHNNLLGPIPYCVGDFSAMT 611
            L  +D+S+N      P    + S + 
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLK 779

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (367), Expect = 1e-36
 Identities = 53/434 (12%), Positives = 112/434 (25%), Gaps = 58/434 (13%)

Query: 194 QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL 253
           QL      + + + LK       G+   +  G       S         +       + L
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 254 GYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313
                +  L L      G +P ++G LT L+ L   ++           +     + E  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF 373
            ++         L     L    L++ + +                        ++ P  
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP---------------------EMKPIK 418

Query: 374 PTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGS 433
                +  +     L +      +     +L   L  +    +  +              
Sbjct: 419 KDSRISLKDTQIGNLTNRITF--ISKAIQRLT-KLQIIYFANSPFTYDNIAV----DWED 471

Query: 434 VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
            +    +      L  SNL    L D+++        +P  + +L +L +L I+ N    
Sbjct: 472 ANSDYAKQYENEELSWSNLKD--LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 494 MTNNNFS-GEIPESIGSLLTIRFLVLSNNHLSG-----------------------EIPP 529
                     + +   +   I+   +  N+L                             
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS--ELCKLSALH 587
           +      +  L L  NQ+   IP         +  L    N     IP+      +  + 
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647

Query: 588 ILDLSHNNLLGPIP 601
            +D S+N +     
Sbjct: 648 SVDFSYNKIGSEGR 661

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (335), Expect = 1e-32
 Identities = 71/498 (14%), Positives = 148/498 (29%), Gaps = 87/498 (17%)

Query: 129 LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188
              ++ LD  N  + S   +   +  N  + +   +           +   +  L L+G 
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID-GLSECINSSSLARLELGYNQLTG 247
              +G++   +G L  L+ L    +  +     F D  L+  ++     R+ + Y ++  
Sbjct: 334 G-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI 307
           +    L    +L    +  N  +  I           ++   +N++     ++  +L+ +
Sbjct: 393 DYDQRLNLS-DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKL 450

Query: 308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYY 367
           +++  +++              T                                   Y 
Sbjct: 451 QIIYFANSP------------FTYD---------------------NIAVDWEDANSDYA 477

Query: 368 QLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV 427
           +          N  +LT + L +      LP +   L   L  L++  N           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKAD 536

Query: 428 F-RFPGSV---------DLSSNRFEG-PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG 476
           + R               +  N  E  P       + KL    LD   N +     ++ G
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL--GLLDCVHNKV--RHLEAFG 592

Query: 477 NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLT-IRFLVLSNNHLSGEIPP--SLKN 533
              +L  L +  N +          EIPE   +    +  L  S+N L   IP   + K+
Sbjct: 593 TNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642

Query: 534 CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH 593
             +M S+D   N++       I  SM     +   +                   + LS+
Sbjct: 643 VYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINAST-------------------VTLSY 682

Query: 594 NNLLGPIPYCVGDFSAMT 611
           N +           S ++
Sbjct: 683 NEIQKFPTELFATGSPIS 700

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  206 bits (527), Expect = 6e-59
 Identities = 99/495 (20%), Positives = 161/495 (32%), Gaps = 38/495 (7%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189
            + K LDLS N       +  F+   L  LDLS  ++Q      + SL+ L  L L+GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-N 248
            ++         L +LQ L       +   +  I  L       +L  L + +N +    
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFK 140

Query: 249 LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE----ELYLTSNQMNGKFPESFGQL 304
           LP     L NL +L+L  N         L  L  +      L L+ N MN   P +F ++
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364
             +  L L +N     +    ++ L  LE   L+     +      FD      L  L I
Sbjct: 201 R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 365 RYYQL------GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHL 418
             ++L                 T +++  L S +I           N     L++     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF 316

Query: 419 SGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNL 478
                            L+    +G       +L  L   DL  +  S  G   QS    
Sbjct: 317 GQFPTLK----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 479 KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS-LKNCSLM 537
             L  L +S N +           +  +   L  +  L   +++L      S   +   +
Sbjct: 373 TSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNL 596
             LD+                + SL +L++  N F      +   +L  L  LDLS   L
Sbjct: 424 IYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 597 LGPIPYCVGDFSAMT 611
               P      S++ 
Sbjct: 483 EQLSPTAFNSLSSLQ 497

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (500), Expect = 3e-55
 Identities = 96/543 (17%), Positives = 167/543 (30%), Gaps = 67/543 (12%)

Query: 107 ELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFN 152
           E++     +   L  L  L L+ N                + L        S     + +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 153 ITNLLSLDLSSNDLQG-DIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 211
           +  L  L+++ N +Q   +P+ FS+L +L+ LDLS N  ++     +L  L  +  L LS
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181

Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFL 270
           L+     ++    G         L +L L  N  + N+    +  L  L    L    F 
Sbjct: 182 LDLSLNPMNFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 271 GS------IPPSLGNLTFLEELYLTSNQMN---GKFPESFGQLSAIRVLELSDNQWEGFI 321
                      +L  L  L         ++       + F  L+ +    L     E   
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 322 TDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL-VIRYYQLGPKFPTWLRNQ 380
             ++      LE +            N  F   P  KL+ L  + +            + 
Sbjct: 299 DFSYNFGWQHLELV------------NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 381 TELTTLVL--NSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSS 438
             L  L L  N  S              +L  LD+  N +     N L       +D   
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 439 NRFEGPIPLWS-SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----- 492
           +  +         +L  L    LDIS      +       L  L  L ++ N+       
Sbjct: 406 SNLKQMSEFSVFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 493 ------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 540
                       D++        P +  SL +++ L +S+N+         K  + +  L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE--LCKLSALHILDLSHNNLLG 598
           D   N +  +    +     SL+ L L  N F  T   +  L  +     L +    +  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 599 PIP 601
             P
Sbjct: 584 ATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (500), Expect = 4e-55
 Identities = 102/518 (19%), Positives = 175/518 (33%), Gaps = 68/518 (13%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNI 153
           LR   S S     +L+ LDLS                    L L+ N   S        +
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           ++L  L     +L          L +L+ L+++ N     +L      L NL+ L LS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
           +        +  L +         L+L  N +    P +   +  L  L L  N    ++
Sbjct: 160 KIQSIYCTDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216

Query: 274 PP-SLGNLTFLEELYLTSNQMNGKF------PESFGQLSAIRVLELSDNQWEGFITD--A 324
               +  L  LE   L   +   +         +   L  + + E      + ++ D   
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 325 HLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELT 384
               LT++   SL      S++     D+   F  ++L +   + G      L++   L 
Sbjct: 277 LFNCLTNVSSFSL-----VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LK 328

Query: 385 TLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGP 444
            L   S    +      L    +L+ LD+  N LS                     F+G 
Sbjct: 329 RLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLS---------------------FKGC 364

Query: 445 IPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIP 504
                   T   L+ LD+SFN +   +  +   L+QL  L   ++NL  M+         
Sbjct: 365 CSQSDFGTTS--LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-------F 414

Query: 505 ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 564
               SL  + +L +S+ H            S ++ L +  N    N    I   + +L+ 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602
           L L         P+    LS+L +L++SHNN      +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (348), Expect = 1e-34
 Identities = 75/438 (17%), Positives = 136/438 (31%), Gaps = 46/438 (10%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGD------I 170
            +  ++           L L NN  +  +       +  L    L   + + +       
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 171 PDGFSSLNSLQL--LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228
                 L +L +    L+   +    +      L N+ +  L               + +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------VKD 299

Query: 229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYL 288
              +     LEL   +      + L  LK L +      S  G    S  +L  LE L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDL 354

Query: 289 TSNQMN--GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
           + N ++  G   +S    ++++ L+LS N      ++     L  LE L      +S+L 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDF---QHSNLK 409

Query: 347 FNISFDWIPPFK-LRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
               F      + L YL I +      F       + L  L +   S  +          
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSV---DLSSNRFEGPIPLWSSNLTKLYLRDLDI 462
             L  LD+    L    P    F    S+   ++S N F          L  L  + LD 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL--QVLDY 525

Query: 463 SFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPES--IGSLLTIRFLVLSN 520
           S N I  S  Q + +    L  +       ++T N+F+        +  +   R L++  
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFL-------NLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 521 NHLSGEIPPSLKNCSLMD 538
             +    P   +   ++ 
Sbjct: 579 ERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 9e-29
 Identities = 69/377 (18%), Positives = 121/377 (32%), Gaps = 61/377 (16%)

Query: 105 VHELRGKISPSLLQLKDLEYLDLSLNNF------------KVLDLSNNGFNSTLPHWLFN 152
           +      I      L ++    L                 + L+L N  F       L +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 153 ITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF-LEGQLSRNLGTLCNLQTLKLS 211
           +       L+    +G        L SL+ LDLS N    +G  S++     +L+ L LS
Sbjct: 327 LKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS-LGYLKNLRYLELWYNSFL 270
            N      S+F       +    L  L+  ++ L      S    L+NL YL++ +    
Sbjct: 382 FNGVITMSSNF-------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 271 GSIPPSLGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
            +       L+ LE L +  N     F P+ F +L  +  L+LS  Q E     A   +L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSL 493

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
           +SL+ L        ++S N             L               +    L  L  +
Sbjct: 494 SSLQVL--------NMSHN---------NFFSL----------DTFPYKCLNSLQVLDYS 526

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRF---PGSVDLSSNRFEGPIP 446
              I  +          +L  L++  N  +    +    ++      + +   R E   P
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 447 LWSSNLTKLYLRDLDIS 463
                +    +  L+I+
Sbjct: 587 SDKQGMP---VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (297), Expect = 4e-28
 Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 16/252 (6%)

Query: 87  LNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTL 146
                       S +       +G  + S + L  LE+LDLS N           F    
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN--------GLSFKGCC 365

Query: 147 PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQ 206
               F  T+L  LDLS N +   +   F  L  L+ LD   ++  +        +L NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 207 TLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL-PISLGYLKNLRYLELW 265
            L +S        +   +GL      SSL  L++  N    N  P     L+NL +L+L 
Sbjct: 425 YLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
                   P +  +L+ L+ L ++ N         +  L++++VL+ S N          
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 326 LRNLTSLEELSL 337
               +SL  L+L
Sbjct: 539 QHFPSSLAFLNL 550

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (456), Expect = 1e-51
 Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 46/317 (14%)

Query: 39  CKEVEREALLQFKQNLTDPSGRLSSWVGE-DCC--SWRGVGCNNRT--GSIIMLNL-NNP 92
           C   +++ALLQ K++L +P+  LSSW+   DCC  +W GV C+  T    +  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 93  FRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF---------------KVLDL 137
                              I  SL  L  L +L +   N                  L +
Sbjct: 62  LPKP-------------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197
           ++   +  +P +L  I  L++LD S N L G +P   SSL +L  +   GN  + G +  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPD 167

Query: 198 NLGTLCNLQT-LKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL 256
           + G+   L T + +S N+ +G++      L       +LA ++L  N L G+  +  G  
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANL-------NLAFVDLSRNMLEGDASVLFGSD 220

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           KN + + L  NS    +   +G    L  L L +N++ G  P+   QL  +  L +S N 
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 317 WEGFI-TDAHLRNLTSL 332
             G I    +L+     
Sbjct: 280 LCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (410), Expect = 4e-45
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 21/244 (8%)

Query: 374 PTWLRNQTELTTLVLNSASIS--DTLPSWFLQLNLTLDELDVGG-NHLSGRIPNTLVFRF 430
                    +  L L+  ++     +PS    L   L+ L +GG N+L G IP  +  + 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAI-AKL 100

Query: 431 PG--SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISN 488
                + ++     G IP + S +  L    LD S+N+++G++P S+ +L  L+ +    
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTL--VTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 489 NNLSDMTNNNFSGEIPESIGSLLT-IRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 547
           N +S        G IP+S GS       + +S N L+G+IPP+  N +L   +DL  N L
Sbjct: 159 NRIS--------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML 209

Query: 548 SGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF 607
            G+     G S  +   + L  N     +   +     L+ LDL +N + G +P  +   
Sbjct: 210 EGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 608 SAMT 611
             + 
Sbjct: 268 KFLH 271

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 6e-43
 Identities = 76/356 (21%), Positives = 121/356 (33%), Gaps = 74/356 (20%)

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS--IPPSLGNLTFLEELYLT 289
           SS L   +       G L  +      +  L+L   +      IP SL NL +L  LY+ 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 290 S-NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348
             N + G  P +  +L+ +  L ++     G I                           
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--------------------------- 117

Query: 349 ISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTL 408
                                    P +L     L TL  +  ++S TLP     L   L
Sbjct: 118 -------------------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NL 151

Query: 409 DELDVGGNHLSGRIPNTLVFRFPGSV---DLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
             +   GN +SG IP++    F        +S NR  G IP   +NL    L  +D+S N
Sbjct: 152 VGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRN 207

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
            + G      G+ K    +         +  N+ + ++   +G    +  L L NN + G
Sbjct: 208 MLEGDASVLFGSDKNTQKI--------HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 526 EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC 581
            +P  L     + SL++  N L G IP   G ++    +    +N      P   C
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 2e-40
 Identities = 70/389 (17%), Positives = 120/389 (30%), Gaps = 118/389 (30%)

Query: 158 SLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF-LEGQLSRNLGTLCNLQTLKLSLNQFS 216
           + D  +    G + D  +    +  LDLSG +      +  +L  L  L  L +      
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG----- 84

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276
                                   G N L G +P ++  L  L YL + + +  G+IP  
Sbjct: 85  ------------------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336
           L  +  L  L  + N ++G  P S   L  +  +    N+  G I D+   + + L    
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKL---- 175

Query: 337 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDT 396
                                                          T++ ++   ++  
Sbjct: 176 ----------------------------------------------FTSMTISRNRLTGK 189

Query: 397 LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLY 456
           +P  F  LNL    +D+  N L G                              +     
Sbjct: 190 IPPTFANLNLA--FVDLSRNMLEGDASVLF-----------------------GSDKN-- 222

Query: 457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
            + + ++ NS+   +   VG  K L  L + NN +         G +P+ +  L  +  L
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI--------YGTLPQGLTQLKFLHSL 273

Query: 517 VLSNNHLSGEIPPSLKNCSLMDSLDLGEN 545
            +S N+L GEIP    N    D      N
Sbjct: 274 NVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (348), Expect = 2e-36
 Identities = 66/241 (27%), Positives = 95/241 (39%), Gaps = 28/241 (11%)

Query: 379 NQTELTTLVLNSASISD--TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV-- 434
           N  +   L+     + +  TL SW       L   D       G + +T        V  
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSW-------LPTTDCCNRTWLGVLCDTD--TQTYRVNN 54

Query: 435 -DLSSNRFEG--PIPLWSSNLTKLYLRDLDIS-FNSINGSIPQSVGNLKQLLTLVISNNN 490
            DLS        PIP   +NL   YL  L I   N++ G IP ++  L QL  L      
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPAIAKLTQLHYL------ 106

Query: 491 LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 550
              +T+ N SG IP+ +  + T+  L  S N LSG +PPS+ +   +  +    N++SG 
Sbjct: 107 --YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
           IP   G      + + +  N   G IP     L+ L  +DLS N L G      G     
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 611 T 611
            
Sbjct: 224 Q 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  183 bits (466), Expect = 2e-50
 Identities = 97/486 (19%), Positives = 161/486 (33%), Gaps = 31/486 (6%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
           K  +  N G N  +P  L N  +   L+ S N L       FS L +L  LDL+    + 
Sbjct: 15  KTYNCENLGLNE-IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IY 70

Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS 252
                   +   L TL L+ N         + G        +L  L      ++    I 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK------ALKHLFFIQTGISSIDFIP 124

Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
           L   K L  L L  N       P       L+ L   +N ++    E    L     L L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 313 --SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 370
             + N   G    A   +    + L+   T N  + F           L           
Sbjct: 185 NLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFK-GLKNSTIQSLWLGTFEDMDDE 241

Query: 371 --PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF 428
                      +  + ++ L      +   + F   +  L ELD+   HLS  +P+ L  
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGL-V 298

Query: 429 RFPG--SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI-PQSVGNLKQLLTLV 485
                  + LS+N+FE    + +SN   L    L I  N+    +    + NL+ L  L 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSL--THLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 545
           +S++++        S      + +L  ++ L LS N        + K C  ++ LDL   
Sbjct: 357 LSHDDIE------TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 546 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVG 605
           +L         +++  L +L L  +  + +       L AL  L+L  N+          
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 606 DFSAMT 611
               + 
Sbjct: 471 SLQTLG 476

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (459), Expect = 2e-49
 Identities = 99/530 (18%), Positives = 168/530 (31%), Gaps = 56/530 (10%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNI 153
           L    + +  +L +L +LDL+                    L L+ N         L   
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
             L  L      +         +  +L+ L L  N  +             L+ L    N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN 163

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
                  + +  L      ++   L L  N + G +          + L       L  I
Sbjct: 164 AIHYLSKEDMSSLQ----QATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 274 PPSLGNLTF--LEELYLTSNQMNGKFPESFGQLSA--IRVLELSDNQWEGFITDAHLRNL 329
              L N T   L              P  F  L    +  + L  + +    ++      
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCF 277

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
           + L+EL L   + + LS  +    +    L+ LV+   +          N   LT L + 
Sbjct: 278 SGLQELDL---TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGS---VDLSSNRFEGPIP 446
             +    L +  L+    L ELD+  + +       L  R       ++LS N       
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 447 LWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLS------------- 492
                  +  L  LD++F  +     QS   NL  L  L +S++ L              
Sbjct: 394 EAFKECPQ--LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 493 ---DMTNNNFSGEIPESIGS---LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQ 546
              ++  N+F     +   S   L  +  LVLS   LS     +  +  +M+ +DL  N+
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           L+          +  +  L L SNH +  +PS L  LS    ++L  N L
Sbjct: 512 LTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (428), Expect = 3e-45
 Identities = 99/510 (19%), Positives = 170/510 (33%), Gaps = 44/510 (8%)

Query: 108 LRGKISPSLLQLKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNI 153
           +       L   K LE L L                   KVLD  NN  +      + ++
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 154 TNL--LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKL 210
                LSL+L+ ND+ G I  G       Q L+  G   L          T+ +L     
Sbjct: 177 QQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 211 SLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 270
                        +GL E     S+  + L  +        +      L+ L+L     L
Sbjct: 236 EDMDDEDISPAVFEGLCE----MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-L 290

Query: 271 GSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
             +P  L  L+ L++L L++N+       S     ++  L +  N     +    L NL 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 331 SLEELSLIKTSNSSLSF-NISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
           +L EL L      +    N+    +    L+ L + Y +         +   +L  L L 
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPL 447
              +         Q    L  L++  + L       L    P    ++L  N F      
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 448 WSSNLTKL-YLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPES 506
            +++L  L  L  L +SF  ++     +  +LK +  + +S+N L+              
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT---------SSSIE 518

Query: 507 IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILR 566
             S L   +L L++NH+S  +P  L   S   +++L +N L          ++  L   +
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-----SNIYFLEWYK 573

Query: 567 LRSNHFNGTIPSELCKLSALHILDLSHNNL 596
                   T  +       L  + LS   L
Sbjct: 574 ENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 106 HELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLF 151
            +   + + SL  L  LE L LS  +                 +DLS+N   ++      
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEAL 520

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           +    + L+L+SN +   +P     L+  + ++L  N  
Sbjct: 521 SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  180 bits (460), Expect = 2e-49
 Identities = 102/516 (19%), Positives = 168/516 (32%), Gaps = 67/516 (12%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNI 153
           L+   S S     +L++LDLS                    L L+ N   S  P     +
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           T+L +L      L          L +L+ L+++ N     +L      L NL  + LS N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
                  + +  L E  N      L++  N +   +         L  L L  N    +I
Sbjct: 164 YIQTITVNDLQFLRE--NPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 274 PP-SLGNLTFLEELYLTSNQMNGKF------PESFGQLSAIRVLELSDNQ-WEGFITDAH 325
               L NL  L    L   +   +       P     L  + + E       +       
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTT 385
              L ++  +SL     + +S     D    FK + L I   QL       L     L +
Sbjct: 281 FHCLANVSAMSL-----AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKS 332

Query: 386 LVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPI 445
           L L     S +     L    +L  LD+  N LS     +                    
Sbjct: 333 LTLTMNKGSISFKKVALP---SLSYLDLSRNALSFSGCCSY------------------- 370

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
               S+L    LR LD+SFN     +  +   L++L  L   ++ L  +T          
Sbjct: 371 ----SDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE-------FS 418

Query: 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
           +  SL  + +L +S  +   +        + +++L +  N    N  + +  +  +L+ L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 566 RLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
            L               L  L +L++SHNNLL    
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 4e-46
 Identities = 87/481 (18%), Positives = 157/481 (32%), Gaps = 50/481 (10%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189
           ++ K +DLS N       +   N + L  LDLS  +++      +  L+ L  L L+GN 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-N 248
            ++     +   L +L+ L     + +   S  I  L       +L +L + +N +    
Sbjct: 92  -IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCK 144

Query: 249 LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT----FLEELYLTSNQMNGKFPESFGQL 304
           LP     L NL +++L YN         L  L         L ++ N ++    ++F  +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364
             +  L L  N     I    L+NL  L    LI            F+            
Sbjct: 205 K-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE------------ 251

Query: 365 RYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT-LDELDVGGNHLSGRIP 423
                    P+ +    ++T         +D          L  +  + + G  +   + 
Sbjct: 252 ---------PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE 301

Query: 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLT 483
           +        S+ +   + +    L    L  L L     + N    SI      L  L  
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL-----TMNKG--SISFKKVALPSLSY 354

Query: 484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 543
           L +S N LS     ++S           ++R L LS N     +  +      +  LD  
Sbjct: 355 LDLSRNALSFSGCCSYSD------LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 544 ENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603
            + L          S+  L  L +   +           L++L+ L ++ N+        
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 604 V 604
           V
Sbjct: 468 V 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 1e-39
 Identities = 88/488 (18%), Positives = 150/488 (30%), Gaps = 67/488 (13%)

Query: 108 LRGKISPSLLQLKDLEYLDLS---------------LNNFKVLDLSNNGFNSTLPHWLFN 152
           L    S  + QL  L+ L+++               L N   +DLS N   +   + L  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 153 ITNL----LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 208
           +       LSLD+S N +   I D       L  L L GN      +   L  L  L   
Sbjct: 176 LRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 209 KLSLNQFSGE--VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWY 266
           +L L +F  E  +  F   + E +   ++    L Y     +  +    L N+  + L  
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 267 NSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHL 326
            S        +      + L +   Q+          L  ++ L L+ N+          
Sbjct: 295 VSI--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNK---GSISFKK 346

Query: 327 RNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTL 386
             L SL  L L + + S      S+  +    LR+L + +               EL  L
Sbjct: 347 VALPSLSYLDLSRNALSFSG-CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404

Query: 387 VLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIP 446
               +++              L  LD+   +                             
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-------------------- 444

Query: 447 LWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
                LT L    L ++ NS   +   +V  N   L  L +S   L  ++   F      
Sbjct: 445 ---LGLTSL--NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---- 495

Query: 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
               L  ++ L +S+N+L             + +LD   N++       +     SL+  
Sbjct: 496 ----LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFF 550

Query: 566 RLRSNHFN 573
            L +N   
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  131 bits (331), Expect = 2e-32
 Identities = 77/439 (17%), Positives = 135/439 (30%), Gaps = 58/439 (13%)

Query: 183 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGY 242
                    +  +  ++ +  + + + LS N      S      S       L  L+L  
Sbjct: 16  YQCMDQKLSK--VPDDIPS--STKNIDLSFNPLKILKSYSFSNFS------ELQWLDLSR 65

Query: 243 NQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFG 302
            ++      +   L +L  L L  N      P S   LT LE L     ++        G
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
           QL  ++ L ++ N        A+  NLT+L  +         LS+N     I    L++L
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV--------DLSYN-YIQTITVNDLQFL 176

Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
                           N     +L ++   I       F  + L   EL + GN  S  I
Sbjct: 177 --------------RENPQVNLSLDMSLNPIDFIQDQAFQGIKLH--ELTLRGNFNSSNI 220

Query: 423 PNTLVFRFPGS--VDLSSNRFEGPIPLWS------SNLTKLYLRDLDISFNSINGSIPQS 474
             T +    G     L    F+    L          L  + + +  +++ +        
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 475 VGNLKQLLTLVISNNNLSDMTNNNFSGEIPE-----------SIGSLLTIRFLVLSNNHL 523
              L  +  + ++  ++  + +     +                  L  ++ L L+ N  
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG 340

Query: 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIP-AWIGESMPSLSILRLRSNHFNGTIPSELCK 582
           S  I         +  LDL  N LS +   ++      SL  L L  N     + +    
Sbjct: 341 S--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 583 LSALHILDLSHNNLLGPIP 601
           L  L  LD  H+ L     
Sbjct: 398 LEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (271), Expect = 8e-25
 Identities = 61/344 (17%), Positives = 116/344 (33%), Gaps = 30/344 (8%)

Query: 78  NNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDL 137
           + R   I   ++     D                       L ++  + L+  + K L+ 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302

Query: 138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197
                       +       SL +    L+   P     L  L+ L L+ N    G +S 
Sbjct: 303 ------------VPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNK---GSISF 344

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK 257
               L +L  L LS N  S             + ++SL  L+L +N     +  +   L+
Sbjct: 345 KKVALPSLSYLDLSRNALSF----SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 258 NLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
            L++L+  +++       S   +L  L  L ++       F   F  L+++  L+++ N 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 317 WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF-KLRYLVIRYYQLGPKFPT 375
           ++         N T+L  L L   S   L   IS+       +L+ L + +  L     +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDL---SKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 376 WLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLS 419
                  L+TL  +   I  T          +L   ++  N ++
Sbjct: 516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  155 bits (394), Expect = 7e-41
 Identities = 97/497 (19%), Positives = 171/497 (34%), Gaps = 54/497 (10%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
           K LDLS N       +  F+   L  LDLS  ++Q      + SL+ L  L L+GN  ++
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89

Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT-GNLPI 251
                    L +LQ L       +   +  I  L       +L  L + +N +    LP 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPE 143

Query: 252 SLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE----ELYLTSNQMNGKFPESFGQLSAI 307
               L NL +L+L  N         L  L  +      L L+ N MN   P +F ++  +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS-----FNISFDWIPPFKLRYL 362
             L L +N     +    ++ L  LE   L+     +          + + +    +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 363 VIRYYQL-GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR 421
            + Y               T +++  L S +I       +      L+ ++         
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 422 IPNTLVFRFPGSVDLSSNRFEGPIPLWS-SNLTKLYLRD--------------------- 459
              +L       +  +SN+           +L  L L                       
Sbjct: 323 KLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 460 LDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLS 519
           LD+SFN +  ++  +   L+QL  L   ++NL  M+  +          SL  + +L +S
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-------FLSLRNLIYLDIS 429

Query: 520 NNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 579
           + H            S ++ L +  N    N    I   + +L+ L L         P+ 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 580 LCKLSALHILDLSHNNL 596
              LS+L +L+++ N L
Sbjct: 490 FNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (327), Expect = 5e-32
 Identities = 93/491 (18%), Positives = 164/491 (33%), Gaps = 52/491 (10%)

Query: 115 SLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLSLD 160
           +   L  L  L L+ N                + L        S     + ++  L  L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 161 LSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEV 219
           ++ N +Q   +P+ FS+L +L+ LDLS N  ++     +L  L  +  L LSL+     +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGS---IPP 275
           +    G         L +L L  N  + N+    +  L  L    L    F         
Sbjct: 190 NFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 276 SLGNLTFLEELYLTSNQMNG------KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
               L  L  L +   ++           + F  L+ +    L     E     ++    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
             LE ++       +L             L+ L     + G  F     +   L  L L+
Sbjct: 307 QHLELVNCKFGQFPTLKLK---------SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLS 355

Query: 390 SASISD-TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLW 448
              +S     S       +L  LD+  N +     N L       +D   +  +      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 449 S-SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI 507
              +L  L    LDIS      +       L  L  L ++ N+  +         +P+  
Sbjct: 416 VFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------LPDIF 466

Query: 508 GSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
             L  + FL LS   L    P +  + S +  L++  NQL  ++P  I + + SL  + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

Query: 568 RSNHFNGTIPS 578
            +N ++ + P 
Sbjct: 526 HTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 2e-31
 Identities = 97/475 (20%), Positives = 159/475 (33%), Gaps = 52/475 (10%)

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           ++      +    IPD      S + LDLS N  L    S +  +   LQ L LS  +  
Sbjct: 10  ITYQCMELNFY-KIPDNLPF--STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276
                    L      S L+ L L  N +      +   L +L+ L     +        
Sbjct: 66  TIEDGAYQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 277 LGNLTFLEELYLTSNQMN-GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE-- 333
           +G+L  L+EL +  N +   K PE F  L+ +  L+LS N+ +  I    LR L  +   
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLL 178

Query: 334 ELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK-FPTWLRNQTELTTLVL---- 388
            LSL  + N      I        +L  L +R          T ++    L    L    
Sbjct: 179 NLSLDLSLNPMNF--IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 389 --NSASISDTLPSWFLQL-NLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEG 443
             N  ++     S    L NLT++E  +            L        S  L S   E 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 444 PIPL-WSSNLTKLY----------------LRDLDISFNSINGSIPQSVGNLKQLLTLVI 486
                ++     L                 L+ L  + N    +  +   +L  L  L +
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDL 354

Query: 487 SNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQ 546
           S N LS      F G   +S     ++++L LS N +   +  +      ++ LD   + 
Sbjct: 355 SRNGLS------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
           L       +  S+ +L  L +   H           LS+L +L ++ N+      
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 61/323 (18%), Positives = 111/323 (34%), Gaps = 32/323 (9%)

Query: 113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPD 172
                 L+ L  L +       LD   +     +      +TN+ S  L S  ++  + D
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDD----IIDLFNCLTNVSSFSLVSVTIER-VKD 299

Query: 173 G--FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI 230
                    L+L++     F   +L        +L+ L  + N+               +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLK-------SLKRLTFTSNK--------GGNAFSEV 344

Query: 231 NSSSLARLELGYNQLT--GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYL 288
           +  SL  L+L  N L+  G    S     +L+YL+L +N  + ++  +   L  LE L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF 403

Query: 289 TSNQMNGKFPES-FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSF 347
             + +      S F  L  +  L++S               L+SLE L +   + +S   
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKM---AGNSFQE 459

Query: 348 NISFDWIPPF-KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
           N   D       L +L +   QL    PT   + + L  L + S  +  ++P        
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLT 518

Query: 407 TLDELDVGGNHLSGRIPNTLVFR 429
           +L ++ +  N      P      
Sbjct: 519 SLQKIWLHTNPWDCSCPRIDYLS 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (377), Expect = 6e-38
 Identities = 107/497 (21%), Positives = 180/497 (36%), Gaps = 56/497 (11%)

Query: 129 LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSG 187
           LN  + L LS N   +        +  L  L+L S      I    F +L +L++LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 188 NSFLEGQLSRN-LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
           +      L  +    L +L  L+L         SD +       N  +L RL+L  NQ+ 
Sbjct: 83  SKIY--FLHPDAFQGLFHLFELRLYFCGL----SDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 247 G-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTF--LEELYLTSNQMNGKFPESFGQ 303
              L  S G L +L+ ++   N         L  L    L    L +N +  +    +G+
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 304 LS------AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN---SSLSFNI----- 349
                    + +L++S N W   IT      ++  +  SLI   +   +   F+      
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 350 --SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT 407
             +F  +    +R+L + +  +            +L  L L    I+      F  L+  
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-N 315

Query: 408 LDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
           L  L++  N L   + ++  +  P    +DL  N            L K  L+ LD+  N
Sbjct: 316 LQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK--LQTLDLRDN 372

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
           ++      ++  +  +  + +S N L  +   N +  +            + LS N L  
Sbjct: 373 ALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANL------------IHLSENRLEN 415

Query: 526 -EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCK-- 582
            +I   L     +  L L +N+ S           PSL  L L  N       +ELC   
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 583 ---LSALHILDLSHNNL 596
              LS L +L L+HN L
Sbjct: 476 FEGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (369), Expect = 7e-37
 Identities = 102/531 (19%), Positives = 181/531 (34%), Gaps = 72/531 (13%)

Query: 115 SLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFNITNLLSL 159
           S   L+ L+ L+L                    ++LDL ++      P     + +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 160 DLSSNDLQGDI--PDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG 217
            L    L   +     F +L +L  LDLS N      L  + G L +L+++  S NQ   
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 218 EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN------LRYLELWYNSFL- 270
                ++ L       +L+   L  N L   + +  G   N      L  L++  N +  
Sbjct: 163 VCEHELEPLQ----GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 271 -----------GSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL--SAIRVLELSDNQW 317
                       S   SL     +       + +      +F  L  S++R L+LS    
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL 377
              +       L  L+ L+L     + ++   +F  +    L+ L + Y  LG  + +  
Sbjct: 279 F-SLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLD--NLQVLNLSYNLLGELYSSNF 334

Query: 378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLS 437
               ++  + L    I+  +     +    L  LD+  N L+  I           + LS
Sbjct: 335 YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIP---DIFLS 389

Query: 438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSING-SIPQSVGNLKQLLTLVISNNNLSDMTN 496
            N+      +  +         + +S N +    I   +  +  L  L+++ N  S  + 
Sbjct: 390 GNKLVTLPKINLT------ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD-----SLDLGENQLSGNI 551
           +              ++  L L  N L       L             L L  N L+ ++
Sbjct: 444 DQT-------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SL 495

Query: 552 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602
           P  +   + +L  L L SN       ++L   + L ILD+S N LL P P 
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (295), Expect = 1e-27
 Identities = 86/478 (17%), Positives = 155/478 (32%), Gaps = 98/478 (20%)

Query: 119 LKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFNIT--NLLSLDL 161
           LK L  LDLS N                 K +D S+N       H L  +    L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 162 SSNDLQGDIPDGFSSLN------SLQLLDLSGNSF-----------LEGQLSRNLGTLCN 204
           ++N L   +   +           L++LD+SGN +           +    + +L    +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECI--------------------NSSSLARLELGYNQ 244
           +       +       +   GL+                           L  L L YN+
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 245 LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL 304
           +      +   L NL+ L L YN        +   L  +  + L  N +     ++F  L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364
             ++ L+L DN     +T   +  + S+ ++ L      +L                + +
Sbjct: 362 EKLQTLDLRDNA----LT--TIHFIPSIPDIFLSGNKLVTLPKI-------NLTANLIHL 408

Query: 365 RYYQL-GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
              +L       +L     L  L+LN    S          N +L++L +G N L     
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLT 483
                      +L  + F          L+   L+ L ++ N +N   P    +L  L  
Sbjct: 469 T----------ELCWDVF--------EGLSH--LQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 541
           L +++N L+ +++N+              +  L +S N L    P    + S++D   
Sbjct: 509 LSLNSNRLTVLSHNDLPA----------NLEILDISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 489 NNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548
             ++     N + ++P+ + +      L+LS N++      S      +  L+LG     
Sbjct: 6   GRIAFYRFCNLT-QVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             I      ++P+L IL L S+      P     L  L  L L    L
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 3e-36
 Identities = 94/502 (18%), Positives = 172/502 (34%), Gaps = 57/502 (11%)

Query: 115 SLLQLKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLD 160
            L    +L+ L L               L + + LDLS+N  +S    W   +++L  L+
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 161 LSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEV 219
           L  N  Q       F +L +LQ L +            +   L +L  L++         
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGN 279
           S  +  +        +  L L  ++    L I    L ++RYLEL   +        L  
Sbjct: 165 SQSLKSIR------DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339
                 +   + + +    ESF +L  +    L  ++ E    D  L  L          
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE--FDDCTLNGLGDFNPSESDV 276

Query: 340 TSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPS 399
            S       ++        +R L I  + L     T      ++  + + ++ +   +P 
Sbjct: 277 VSELGKVETVT--------IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327

Query: 400 WFLQLNLTLDELDVGGNHLSG-RIPNTLVFRFPGSV---DLSSNRFEGPIPLWSSNLTKL 455
            F Q   +L+ LD+  N +    + N+       S+    LS N     +      L  L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTL 386

Query: 456 -YLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514
             L  LDIS N+ +  +P S    +++  L +S+  +  +                 T+ 
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ-----------TLE 434

Query: 515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574
            L +SNN+L       L     +  L +  N+L   +P       P L ++++  N    
Sbjct: 435 VLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKS 487

Query: 575 TIPSELCKLSALHILDLSHNNL 596
                  +L++L  + L  N  
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (343), Expect = 4e-34
 Identities = 106/488 (21%), Positives = 169/488 (34%), Gaps = 55/488 (11%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
           K LDLS N         L    NL  L L S+ +     D F SL SL+ LDLS N  L 
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LS 87

Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-I 251
              S   G L +L+ L L  N +       +   S   N ++L  L +G  +    +  I
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQT-----LGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 252 SLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 311
               L +L  LE+   S       SL ++  +  L L  ++           LS++R LE
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 312 LSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ--- 368
           L D         + L        +  +    S L+ + SF+ +       L +   +   
Sbjct: 203 LRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLT-DESFNELLKLLRYILELSEVEFDD 260

Query: 369 --------LGPKFPTWLRNQTELTTLVLNSASISD----TLPSWFLQLNLTLDELDVGGN 416
                     P     +    ++ T+ +    I         S    L   +  + V  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 417 HLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWSSNLTKL-YLRDLDISFNSIN--GSI 471
            +   +P +          +DLS N         S+       L+ L +S N +      
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS---GEIP 528
            + +  LK L +L IS N             +P+S      +RFL LS+  +      IP
Sbjct: 380 GEILLTLKNLTSLDISRNTFH---------PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 529 PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588
            +L+       LD+  N L           +P L  L +  N    T+P        L +
Sbjct: 431 QTLE------VLDVSNNNLDS-----FSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLV 477

Query: 589 LDLSHNNL 596
           + +S N L
Sbjct: 478 MKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 7e-33
 Identities = 97/475 (20%), Positives = 168/475 (35%), Gaps = 38/475 (8%)

Query: 127 LSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
           LS +   V D  +  F S +P  L     + SLDLS N +         +  +LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 187 GNSFLEGQLSRN-LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQL 245
            +      +  +   +L +L+ L LS N  S   S +   L      SSL  L L  N  
Sbjct: 59  SSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL------SSLKYLNLMGNPY 110

Query: 246 TG-NLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQ 303
               +      L NL+ L +        I       LT L EL + +  +     +S   
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLV 363
           +  I  L L  ++   F+ +     L+S+  L L  T+ +   F+          ++ L 
Sbjct: 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 364 IRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
            R   L  +    L        L L+     D   +     N +  ++      +     
Sbjct: 230 FRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV----- 283

Query: 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLT 483
            T+  R    + +        +    S L K  ++ + +  + +         +LK L  
Sbjct: 284 ETVTIR---RLHIPQFYLFYDLSTVYSLLEK--VKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSLMDSLD 541
           L +S N + +    N +       G+  +++ LVLS NHL    +    L     + SLD
Sbjct: 339 LDLSENLMVEEYLKNSA-----CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           +  N       +        +  L L S      + + +     L +LD+S+NNL
Sbjct: 394 ISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 69/440 (15%), Positives = 142/440 (32%), Gaps = 73/440 (16%)

Query: 112 ISPSLLQLKDLEYLDLS---------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
           ++     L +L+ L +                L +   L++      +     L +I ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
             L L  ++    +      L+S++ L+L   +    Q S       +    KL+     
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGY-----------LKNLRYLELW 265
                F + L        L+ +E     L G    +                 +R L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ--WEGFITD 323
                  +      L  ++ + + ++++          L ++  L+LS+N    E     
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383
           A      SL+ L         LS N          LR +         K    L     L
Sbjct: 355 ACKGAWPSLQTL--------VLSQN---------HLRSM--------QKTGEILLTLKNL 389

Query: 384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG 443
           T+L ++  +      S      +    L++    +   +   +  +    +D+S+N    
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMR--FLNLSSTGIR-VVKTCI-PQTLEVLDVSNNN--- 442

Query: 444 PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI 503
            +  +S  L +  L++L IS N +  ++P +      LL + IS N L  + +  F    
Sbjct: 443 -LDSFSLFLPR--LQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFD--- 494

Query: 504 PESIGSLLTIRFLVLSNNHL 523
                 L +++ + L  N  
Sbjct: 495 -----RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 51/316 (16%), Positives = 97/316 (30%), Gaps = 27/316 (8%)

Query: 108 LRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
           L      S ++        L+  +F  L                + T     D + ++  
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 168 GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS 227
                G     +++ L +    +L   LS     L  ++ + +  ++       F   L 
Sbjct: 276 VVSELGKVETVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL- 333

Query: 228 ECINSSSLARLELGYNQLTGNL---PISLGYLKNLRYLELWYN--SFLGSIPPSLGNLTF 282
                 SL  L+L  N +           G   +L+ L L  N    +      L  L  
Sbjct: 334 -----KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN 342
           L  L ++ N  +   P+S      +R L LS       I         +LE L +   + 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG----IRVVKTCIPQTLEVLDVSNNNL 443

Query: 343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL 402
            S S  +        +L+ L I   +L    P        L  + ++   +  ++P    
Sbjct: 444 DSFSLFLP-------RLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK-SVPDGIF 493

Query: 403 QLNLTLDELDVGGNHL 418
               +L ++ +  N  
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 46/344 (13%), Positives = 95/344 (27%), Gaps = 49/344 (14%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
             SIP  L     ++ L L+ N++           + ++VL L  ++      DA   +L
Sbjct: 17  FTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSL 73

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
            SLE L L     SSLS                            +W    + L  L L 
Sbjct: 74  GSLEHLDLSDNHLSSLS---------------------------SSWFGPLSSLKYLNLM 106

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPL 447
                    +        L  L +G       I             +++ +         
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 448 WSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI 507
              ++  +    L +  +     +      L  +  L + + NL+    +    +   S 
Sbjct: 167 SLKSIRDI--HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 508 GSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
              L  R  VL++   + E+   L+    +  ++  +  L+G              +   
Sbjct: 225 MKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNG--------------LGDF 269

Query: 568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
             +  +        +   +  L +    L   +         + 
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 13/143 (9%)

Query: 460 LDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLS 519
            D    S   SIP  +     + +L +S N ++ + + +              ++ L+L 
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRA--------CANLQVLILK 58

Query: 520 NNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG-TIPS 578
           ++ ++     +  +   ++ LDL +N LS ++ +     + SL  L L  N +    + S
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 579 ELCKLSALHILDLSHNNLLGPIP 601
               L+ L  L + +      I 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIR 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 4e-34
 Identities = 117/479 (24%), Positives = 189/479 (39%), Gaps = 73/479 (15%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D +L       L       T+     ++  + +L      ++    DG   LN+L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 186 SGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYN 243
           S N     QL+    L  L  L  + ++ NQ +      I  L+   N   L  L L  N
Sbjct: 76  SNN-----QLTDITPLKNLTKLVDILMNNNQIAD-----ITPLANLTN---LTGLTLFNN 122

Query: 244 QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQ 303
           Q+T      L  L NL  LEL  N+   S   +L  LT L++L   +   +    +    
Sbjct: 123 QITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLAN 175

Query: 304 LSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
           L+ +  L++S N+    ++D + L  LT+LE L     +N+ +S       +    L  L
Sbjct: 176 LTTLERLDISSNK----VSDISVLAKLTNLESLIA---TNNQISDITPLGILT--NLDEL 226

Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
            +   QL  K    L + T LT L L +  IS+  P   L     L EL +G N +S   
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS 281

Query: 423 P----NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNL 478
           P      L      +++L+ N+ E   P+  SNL    L  L + FN+I+   P  V +L
Sbjct: 282 PLAGLTALT-----NLELNENQLEDISPI--SNLKN--LTYLTLYFNNISDISP--VSSL 330

Query: 479 KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD 538
            +L  L   NN +SD            S+ +L  I +L   +N +S   P  L N + + 
Sbjct: 331 TKLQRLFFYNNKVSD----------VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 539 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNL 596
            L L +   +            ++SI     N     I P+ +    +    D++ N  
Sbjct: 379 QLGLNDQAWTNAPV----NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 9e-27
 Identities = 98/468 (20%), Positives = 162/468 (34%), Gaps = 94/468 (20%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
             L  L  L  + ++ N    +              L N+TNL  L L +N +     D 
Sbjct: 84  TPLKNLTKLVDILMNNNQIADIT------------PLANLTNLTGLTLFNNQITD--IDP 129

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
             +L +L  L+LS N+  +      L  L +LQ L              +  L+      
Sbjct: 130 LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTD------LKPLANLTT-- 178

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
            L RL++  N+++      L  L NL  L    N      P  LG LT L+EL L  NQ+
Sbjct: 179 -LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDW 353
                 +   L+ +  L+L++NQ         L  LT L EL L     S++S       
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP------ 282

Query: 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDV 413
                                  L   T LT L LN   + D  P   L+    L  L +
Sbjct: 283 -----------------------LAGLTALTNLELNENQLEDISPISNLK---NLTYLTL 316

Query: 414 GGNHLSGRIP----NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING 469
             N++S   P      L       +   +N+      L  +NLT   +  L    N I+ 
Sbjct: 317 YFNNISDISPVSSLTKLQ-----RLFFYNNKVSDVSSL--ANLTN--INWLSAGHNQISD 367

Query: 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
             P  + NL ++  L +++   ++          P +  + ++I   V +        P 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTN---------APVNYKANVSIPNTVKNVTGAL-IAPA 415

Query: 530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 577
           ++ +       D+  N  S      +  +      +   +  F+GT+ 
Sbjct: 416 TISDGGSYTEPDITWNLPSYTNE--VSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 7e-12
 Identities = 60/294 (20%), Positives = 104/294 (35%), Gaps = 46/294 (15%)

Query: 312 LSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP 371
             D       TD  L       +  L KT+ +        D     ++  L      +  
Sbjct: 9   TQDTPINQIFTDTALAEKM---KTVLGKTNVTDTVSQTDLD-----QVTTLQADRLGI-- 58

Query: 372 KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP----NTLV 427
           K    +     LT +  ++  ++D  P   L+    L ++ +  N ++   P      L 
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLT 115

Query: 428 FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIS 487
                 + L +N+     PL   NLT   L  L++S N+I+     ++  L  L  L   
Sbjct: 116 -----GLTLFNNQITDIDPL--KNLTN--LNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 488 NNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 547
           N                + + +L T+  L +S+N +S      L   + ++SL    NQ+
Sbjct: 165 NQVTD-----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI 211

Query: 548 SGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
           S   P      + +L  L L  N         L  L+ L  LDL++N +    P
Sbjct: 212 SDITPL---GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (314), Expect = 2e-31
 Identities = 79/399 (19%), Positives = 142/399 (35%), Gaps = 70/399 (17%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D  L       L        +      + ++  L ++   +   I  G   L +L+ L+L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNL 73

Query: 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQL 245
           +GN   +      L  L  L  L +  N+        I  +S   N ++L  L L  + +
Sbjct: 74  NGNQITD---ISPLSNLVKLTNLYIGTNK--------ITDISALQNLTNLRELYLNEDNI 122

Query: 246 TGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLS 305
           +      L  L  +  L L  N    S    L N+T L  L +T +++          L+
Sbjct: 123 SD--ISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLT 177

Query: 306 AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIR 365
            +  L L+ NQ E       L +LTSL   +      + ++                   
Sbjct: 178 DLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP------------------ 216

Query: 366 YYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT 425
                      + N T L +L + +  I+D  P   L     L  L++G N +S  I   
Sbjct: 217 -----------VANMTRLNSLKIGNNKITDLSPLANLS---QLTWLEIGTNQISD-INAV 261

Query: 426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLV 485
                   +++ SN+      L  +NL++L    L ++ N +     + +G L  L TL 
Sbjct: 262 KDLTKLKMLNVGSNQISDISVL--NNLSQL--NSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS 524
           +S N+++D+            + SL  +     +N  + 
Sbjct: 318 LSQNHITDI----------RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 5e-29
 Identities = 96/414 (23%), Positives = 158/414 (38%), Gaps = 72/414 (17%)

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
           L       N   P    ++   +   L    +   +      L S+  L ++G      Q
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ 60

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG 254
               +  L NL+ L L+ NQ        I  +S   N   L  L +G N++T     +L 
Sbjct: 61  ---GIEYLTNLEYLNLNGNQ--------ITDISPLSNLVKLTNLYIGTNKITD--ISALQ 107

Query: 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314
            L NLR L L  ++ +  I P L NLT +  L L +N  N         ++ +  L +++
Sbjct: 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTE 164

Query: 315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 374
           ++ +       + NLT L  LSL   + + +        +    L Y      Q+     
Sbjct: 165 SKVKDVTP---IANLTDLYSLSL---NYNQIEDISPLASLT--SLHYFTAYVNQI--TDI 214

Query: 375 TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV 434
           T + N T L +L + +  I+D  P   L   LT                          +
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLS-QLT-------------------------WL 248

Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDM 494
           ++ +N+      +   +LTKL  + L++  N I+      + NL QL +L ++NN L + 
Sbjct: 249 EIGTNQISDINAV--KDLTKL--KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN- 301

Query: 495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548
                  E  E IG L  +  L LS NH++   P  L + S MDS D     + 
Sbjct: 302 -------EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (283), Expect = 2e-27
 Identities = 84/393 (21%), Positives = 151/393 (38%), Gaps = 72/393 (18%)

Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264
             TL              I+ +    + +   R  L    +T    ++   L+++  L +
Sbjct: 2   AATLATLPAP--------INQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVV 51

Query: 265 WYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD- 323
                + SI   +  LT LE L L  NQ+          L  +  L +  N+    ITD 
Sbjct: 52  AGEK-VASIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNK----ITDI 103

Query: 324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383
           + L+NLT+L EL L + + S +S                              L N T++
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP-----------------------------LANLTKM 134

Query: 384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG 443
            +L L +     +  S    +   L+ L V  + +   +          S+ L+ N+ E 
Sbjct: 135 YSLNLGANHNL-SDLSPLSNMT-GLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIED 191

Query: 444 PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI 503
             PL  ++LT L         N I    P  V N+ +L +L I NN ++D+         
Sbjct: 192 ISPL--ASLTSL--HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--------- 236

Query: 504 PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLS 563
              + +L  + +L +  N +S     ++K+ + +  L++G NQ+S +I      ++  L+
Sbjct: 237 -SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVL--NNLSQLN 290

Query: 564 ILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            L L +N         +  L+ L  L LS N++
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (252), Expect = 2e-23
 Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 114 PSLLQLKDLEYLDLS------------LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161
             +  L +LEYL+L+            L     L +  N    T    L N+TNL  L L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN--KITDISALQNLTNLRELYL 117

Query: 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSD 221
           + +++    P   ++L  +  L+L  N  L       L  +  L  L ++ ++       
Sbjct: 118 NEDNISDISP--LANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKD---- 169

Query: 222 FIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281
            +  ++   +   L  L L YNQ+       L  L +L Y   + N  +  I P + N+T
Sbjct: 170 -VTPIANLTD---LYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQ-ITDITP-VANMT 221

Query: 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSLIKT 340
            L  L + +N++          LS +  LE+  NQ    I+D   +++LT L+ L++   
Sbjct: 222 RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQ----ISDINAVKDLTKLKMLNV--- 272

Query: 341 SNSSLSFNISFDWIPPF----KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDT 396
            ++ +S       I       +L  L +   QLG +    +   T LTTL L+   I+D 
Sbjct: 273 GSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 397 LPSWFLQLNLTLDELDVGGNHLS 419
            P   L     +D  D     + 
Sbjct: 327 RP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 9e-14
 Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 26/225 (11%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
             +  E    VL  AS++D +    L+   ++ +L V G  ++  I           ++L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELE---SITKLVVAGEKVAS-IQGIEYLTNLEYLNL 73

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
           + N+     PL  SNL KL   +L I  N I  +   ++ NL  L  L ++ +N+SD+  
Sbjct: 74  NGNQITDISPL--SNLVKL--TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI-- 125

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
                     + +L  +  L L  NH   ++ P L N + ++ L + E+++    P    
Sbjct: 126 --------SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPI--- 173

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
            ++  L  L L  N      P  L  L++LH      N +    P
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 1e-28
 Identities = 103/495 (20%), Positives = 168/495 (33%), Gaps = 92/495 (18%)

Query: 107 ELRGKISPSLLQLKDLEYLDLS---LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS 163
           E      P   + +++    L          L+L+N G  S+LP       +L SL  S 
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE---LPPHLESLVASC 100

Query: 164 NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
           N L  ++P+   SL SL + + +        LS        L+ L +S NQ        +
Sbjct: 101 NSLT-ELPELPQSLKSLLVDNNNLK-----ALSDLPP---LLEYLGVSNNQ--------L 143

Query: 224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL 283
           + L E  NSS L  +++  N L   LP       +L ++    N       P L NL FL
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL--EELPELQNLPFL 197

Query: 284 EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS 343
             +Y  +N +  K P+    L     +   +N  E       L+NL  L  +        
Sbjct: 198 TAIYADNNSLK-KLPDLPLSL---ESIVAGNNILEEL---PELQNLPFLTTIYADNNLLK 250

Query: 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ 403
           +L             L  L +R   L    P   ++ T L       + +S+  P+    
Sbjct: 251 TLPDLPP-------SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN---- 298

Query: 404 LNLTLDELDVGGNHLSG--RIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLD 461
               L  L+   N +     +P +L       +++S+N+    +P     L +L      
Sbjct: 299 ----LYYLNASSNEIRSLCDLPPSLE-----ELNVSNNKLIE-LPALPPRLERLIASFNH 348

Query: 462 ISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN 521
           ++       +P+   NLKQL    +  N L          E P+   S+       L  N
Sbjct: 349 LA------EVPELPQNLKQL---HVEYNPLR---------EFPDIPESVED-----LRMN 385

Query: 522 HLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC 581
               E+P   +N      L +  N L    P        S+  LR+ S            
Sbjct: 386 SHLAEVPELPQNLK---QLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHE 437

Query: 582 KLSALHILDLSHNNL 596
               L      H++ 
Sbjct: 438 TTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 72/451 (15%), Positives = 136/451 (30%), Gaps = 108/451 (23%)

Query: 117 LQLKDLEYLDLSLNNF----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL 166
              +    L+L+              + L  S N   + LP    ++ +LL  + +   L
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKAL 126

Query: 167 QG----------------DIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKL 210
                              +P+   + + L+++D+  N      L +      +L+ +  
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAA 180

Query: 211 SLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 270
             NQ        ++ L E  N   L  +    N L   LP       +L  +    N   
Sbjct: 181 GNNQ--------LEELPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL- 227

Query: 271 GSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
               P L NL FL  +Y  +N +    P+    L     L + DN           ++LT
Sbjct: 228 -EELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLTDL--PELPQSLT 280

Query: 331 SLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNS 390
            L+    I +  S L          P  L YL     ++         +   L  L +++
Sbjct: 281 FLDVSENIFSGLSEL----------PPNLYYLNASSNEI-RSLCDLPPS---LEELNVSN 326

Query: 391 ASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGS---VDLSSNRFEGPIPL 447
             +   LP+   +L      L    NHL+  +P         +   + +  N      P 
Sbjct: 327 NKLI-ELPALPPRLE----RLIASFNHLA-EVPELP-----QNLKQLHVEYNPLRE-FPD 374

Query: 448 WSSNLTKLY--------------LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
              ++  L               L+ L +  N +    P    +++ L            
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL-----------R 422

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLS 524
           M +         +  +   +   V  ++H  
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 67/331 (20%), Positives = 112/331 (33%), Gaps = 57/331 (17%)

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
           ++S L  +P    N+    E Y   ++     P   G+   + V  L D           
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC---------- 68

Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTT 385
                   EL L     SSL             L  LV     L  + P   ++   L  
Sbjct: 69  --LDRQAHELELNNLGLSSLPELPP-------HLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 386 LVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPI 445
              N  ++SD  P         L+ L V  N L  ++P      F   +D+ +N  +  +
Sbjct: 119 DNNNLKALSDLPPL--------LEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK-L 168

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
           P    +L  +   +  +        +P  + NL  L  +   NN+L          ++P+
Sbjct: 169 PDLPPSLEFIAAGNNQLE------ELP-ELQNLPFLTAIYADNNSLK---------KLPD 212

Query: 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
              SL     +V  NN L     P L+N   + ++    N L   +P        SL  L
Sbjct: 213 LPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP----SLEAL 262

Query: 566 RLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            +R N+    +P     L+ L + +   + L
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 7e-17
 Identities = 77/394 (19%), Positives = 139/394 (35%), Gaps = 79/394 (20%)

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL--------- 280
           ++++ L       + LT  +P+    +K+       ++ +  + PP  G           
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 281 ----TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD--AHLRNLTSLEE 334
                   EL L +  ++   PE    L     L  S N     +T+     ++L SL  
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNS----LTELPELPQSLKSLLV 118

Query: 335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS 394
            +    + S L          P  L YL +   QL  K P  L+N + L  + +++ S+ 
Sbjct: 119 DNNNLKALSDL----------PPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK 166

Query: 395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTK 454
             LP     L      +  G N L   +P      F  ++   +N  +    L  S    
Sbjct: 167 -KLPDLPPSLE----FIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKLPDLPLS---- 216

Query: 455 LYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514
             L  +    N +       + NL  L T+   NN L           +P+   SL    
Sbjct: 217 --LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK---------TLPDLPPSL---E 260

Query: 515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP------------AWIGESMPSL 562
            L + +N+L+ ++P   ++ + +D  +   + LS   P              + +  PSL
Sbjct: 261 ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319

Query: 563 SILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             L + +N     +P+   +   L  L  S N+L
Sbjct: 320 EELNVSNNKLI-ELPALPPR---LERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 35/201 (17%)

Query: 111 KISPSLLQLKDLEYLDLSLNNF-------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSS 163
            +      L  L+  +   +           L+ S+N   S L        +L  L++S+
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSN 326

Query: 164 NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
           N L  ++P   +    L+ L  S N      L+       NL+ L +  N    E  D  
Sbjct: 327 NKLI-ELP---ALPPRLERLIASFN-----HLAEVPELPQNLKQLHVEYNPLR-EFPDIP 376

Query: 224 DGLSECINS----------SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
           + + +   +           +L +L +  N L    P       ++  L +     +   
Sbjct: 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPY 432

Query: 274 PPSLGNLTFLEELYLTSNQMN 294
             +      LE+     +  +
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 4e-28
 Identities = 66/479 (13%), Positives = 133/479 (27%), Gaps = 60/479 (12%)

Query: 125 LDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD 184
           +  + N +K+  ++++     L     +  N+  LDLS N L        +    L+LL+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ 244
           LS N   E   + +L +L  L+TL L+ N            + E +   S+  L    N 
Sbjct: 65  LSSNVLYE---TLDLESLSTLRTLDLNNNY-----------VQELLVGPSIETLHAANNN 110

Query: 245 LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG-KFPESFGQ 303
           ++    +S    +  + + L  N          G  + ++ L L  N+++   F E    
Sbjct: 111 ISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLV 363
              +  L L  N             L +L            LS N         KL ++ 
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTL-----------DLSSN---------KLAFM- 206

Query: 364 IRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
                         ++   +T + L +  +   +          L+  D+ GN       
Sbjct: 207 ----------GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTL 254

Query: 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLT 483
                +      ++    +          T   L                      +L+ 
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY-----GAYCCEDLPAPFADRLIA 309

Query: 484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 543
           L    + L     +     +     +    R +          I           +L+  
Sbjct: 310 LKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 544 ENQLSGNIPAWIGESMPSLSILRLRSNHFNG--TIPSELCKLSALHILDLSHNNLLGPI 600
           +  L     +    +   L     ++           E   L  L  +   +  +    
Sbjct: 369 KKALD-EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 7e-24
 Identities = 71/418 (16%), Positives = 126/418 (30%), Gaps = 45/418 (10%)

Query: 112 ISPSLLQ-LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDI 170
              SL Q   +++ LDLS N    +              L   T L  L+LSSN L  + 
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQIS----------AADLAPFTKLELLNLSSNVLY-ET 73

Query: 171 PDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSEC 229
            D   SL++L+ LDL+ N        + L    +++TL  + N  S    S         
Sbjct: 74  LD-LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRG------- 119

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG-SIPPSLGNLTFLEELYL 288
                   + L  N++T    +  G    ++YL+L  N     +      +   LE L L
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 289 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348
             N +     +     + ++ L+LS N+          ++   +  +SL    N+ L   
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISL---RNNKLV-L 228

Query: 349 ISFDWIPPFKLRYLVIRYYQL-GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT 407
           I         L +  +R           +      + T+   +             +   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 408 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI 467
                     L     + L+        L S +      L      +   R++D      
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 468 NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
              I Q     +  +TL      L +  +N        +   L       +    L  
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR-----AHAELDGTLQQAVGQIELQH 401

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.4 bits (245), Expect = 7e-22
 Identities = 53/399 (13%), Positives = 108/399 (27%), Gaps = 27/399 (6%)

Query: 114 PSLLQLKDLEYLDLSLNNF---------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSN 164
             L  L  L  LDL+ N           + L  +NN   S +           ++ L++N
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRVSCSRG--QGKKNIYLANN 130

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
            +           + +Q LDL  N       +    +   L+ L L  N         I 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--------IY 182

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE 284
            +   +  + L  L+L  N+L   +         + ++ L  N  L  I  +L     LE
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240

Query: 285 ELYLTSNQMN-GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS 343
              L  N  + G   + F +   ++ +     +      +      T           + 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG-HYGAYCCEDL 299

Query: 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ 403
              F      +   +   L  +  +   +      NQ     +         T+      
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYR-TVIDQVTL 357

Query: 404 LNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
                  L+     L  ++ N           L     +  +   +   + L L    + 
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 464 FNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGE 502
                  + Q       +    +  +  + +   N   +
Sbjct: 418 -RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLK 455

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 35/328 (10%)

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
           +I     N    +   +T + +             ++ L+LS N          L   T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTK 59

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
           LE L+L   S++ L   +  + +    LR L +    +       L     + TL   + 
Sbjct: 60  LELLNL---SSNVLYETLDLESLS--TLRTLDLNNNYV-----QELLVGPSIETLHAANN 109

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEG-PIPLW 448
           +IS    S           + +  N ++  + +           +DL  N  +       
Sbjct: 110 NISRVSCSRGQGKK----NIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 449 SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG 508
           +++     L  L++ +N I   +   V    +L TL +S+N L+          +     
Sbjct: 165 AASSDT--LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA---------FMGPEFQ 211

Query: 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 568
           S   + ++ L NN L   I  +L+    ++  DL  N                +  +  +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 569 SNHFNGTIPSELCKLSALHILDLSHNNL 596
           +         E C +    +        
Sbjct: 271 TVKKLTGQNEEECTV--PTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 28/243 (11%), Positives = 51/243 (20%), Gaps = 19/243 (7%)

Query: 111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGD- 169
            + P       + ++ L  N               +   L    NL   DL  N      
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-----------VLIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 170 IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229
           + D FS    +Q +       L GQ                         + F D L   
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECT---VPTLGHYGAYCCEDLPAPFADRLIA- 309

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLT 289
           +     A L    ++    L          R ++     +   I            L   
Sbjct: 310 LKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI 349
              ++ +        + +                      + L+ L  I      +    
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIEL--QHATEEQSPLQLLRAIVKRYEEMYVEQ 426

Query: 350 SFD 352
              
Sbjct: 427 QSV 429

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 533 NCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLS 592
           N +      + ++ L     A + +S  ++  L L  N  +    ++L   + L +L+LS
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 593 HNNLLGPIP 601
            N L   + 
Sbjct: 67  SNVLYETLD 75

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 7e-26
 Identities = 60/420 (14%), Positives = 112/420 (26%), Gaps = 95/420 (22%)

Query: 144 STLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLC 203
            +  H   + +   +L    +       D  S        D +                 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANSN 56

Query: 204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 263
           N Q    +        +D ++  +          LEL    L    P     L +L+++ 
Sbjct: 57  NPQIETRTGRALK-ATADLLEDAT----QPGRVALELRSVPLP-QFPDQAFRLSHLQHMT 110

Query: 264 LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD 323
           +     L  +P ++     LE L L  N +    P S   L+ +R L +           
Sbjct: 111 IDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP------- 161

Query: 324 AHLRNLTSL-EELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE 382
                LT L E L+                                         +    
Sbjct: 162 ----ELTELPEPLAST---------------------------------DASGEHQGLVN 184

Query: 383 LTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE 442
           L +L L    I  +LP+    L   L  L +  + LS  +   +                
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA-LGPAI---------------- 225

Query: 443 GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGE 502
                   +L K  L +LD+   +   + P   G    L  L++ +        +N    
Sbjct: 226 -------HHLPK--LEELDLRGCTALRNYPPIFGGRAPLKRLILKD-------CSNLL-T 268

Query: 503 IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 562
           +P  I  L  +  L L        +P  +        + +  +  +  +      + P+ 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 1e-24
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 32/228 (14%)

Query: 111 KISPSLLQLKDLEYLDLS-------------LNNFKVLDLSNNGFNSTLPHWLFNITNLL 157
           +      +L  L+++ +                  + L L+ N     LP  + ++  L 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLR 153

Query: 158 SLDLSSNDL---------QGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 208
            L + +              D       L +LQ L L         L  ++  L NL++L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSL 211

Query: 209 KLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS 268
           K+  +  S  +   I  L        L  L+L       N P   G    L+ L L   S
Sbjct: 212 KIRNSPLS-ALGPAIHHLP------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
            L ++P  +  LT LE+L L       + P    QL A  ++ +  + 
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 1e-23
 Identities = 62/351 (17%), Positives = 121/351 (34%), Gaps = 56/351 (15%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
           +GS      + +  E LY   +     + +   Q    +    +D             N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQW---QRHYNADRNRWHSAWR--QANS 55

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
            + +  +    +  + +  +     P      L +R   L P+FP      + L  + ++
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQP--GRVALELRSVPL-PQFPDQAFRLSHLQHMTID 112

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
           +A +   LP    Q    L+ L +  N L   +P ++                       
Sbjct: 113 AAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASI----------------------- 146

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGN---------LKQLLTLVISNNNLSDMTNNNFS 500
           ++L +L  R+L I        +P+ + +         L  L +L +    +         
Sbjct: 147 ASLNRL--RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------- 196

Query: 501 GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP 560
             +P SI +L  ++ L + N+ LS  + P++ +   ++ LDL       N P   G    
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRA 253

Query: 561 SLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611
            L  L L+      T+P ++ +L+ L  LDL     L  +P  +    A  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 51/420 (12%), Positives = 109/420 (25%), Gaps = 113/420 (26%)

Query: 177 LNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLA 236
            +  + L   G++ L       L           +                   NS++  
Sbjct: 11  SSGRENLYFQGSTALR-PYHDVLSQWQRHYNADRNRWHS----------AWRQANSNNPQ 59

Query: 237 RLELGYNQLTGNLPISLGYLK--NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
                   L       L          LEL     L   P     L+ L+ + + +  + 
Sbjct: 60  IETRTGRALK-ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWI 354
            + P++                               LE L+L   + + L         
Sbjct: 118 -ELPDTMQ-------------------------QFAGLETLTL---ARNPLR-------- 140

Query: 355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT------- 407
                              P  + +   L  L + +      LP      + +       
Sbjct: 141 -----------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 408 -LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNS 466
            L  L +    +   +P ++                       +NL  L  + L I  + 
Sbjct: 184 NLQSLRLEWTGIR-SLPASI-----------------------ANLQNL--KSLKIRNSP 217

Query: 467 INGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE 526
           ++ ++  ++ +L +L  L        D+         P   G    ++ L+L +      
Sbjct: 218 LS-ALGPAIHHLPKLEEL--------DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
           +P  +   + ++ LDL        +P+ I   +P+  I+ +  +              A 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 12/182 (6%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
            S+  L  L  L +     ++ +L     ++        + NL SL L    ++  +P  
Sbjct: 144 ASIASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
            ++L +L+ L +  +      L   +  L  L+ L L              G +      
Sbjct: 202 IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA------ 253

Query: 234 SLARLEL-GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
            L RL L   + L   LP+ +  L  L  L+L     L  +P  +  L     + +  + 
Sbjct: 254 PLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 293 MN 294
             
Sbjct: 313 QA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 61/343 (17%), Positives = 106/343 (30%), Gaps = 40/343 (11%)

Query: 103 DAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLS 162
              H   G+ +        L      L+ ++    ++     +   W    +N   ++  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA--WRQANSNNPQIETR 63

Query: 163 SNDLQGDIPDGFSSLNSLQL--LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS 220
           +        D            L+L        Q       L +LQ + +       E+ 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 221 DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL 280
           D +         + L  L L  N L   LP S+  L  LR L +     L  +P  L + 
Sbjct: 121 DTMQQF------AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 281 TF---------LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
                      L+ L L    +    P S   L  ++ L++ ++          + +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPK 230

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPF-----KLRYLVIRYYQLGPKFPTWLRNQTELTTL 386
           LEEL L     ++L         PP       L+ L+++        P  +   T+L  L
Sbjct: 231 LEELDL--RGCTALRN------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 387 VLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR 429
            L        LPS   QL      + V  +  +    +  V R
Sbjct: 283 DLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLDQHRPVAR 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 2e-25
 Identities = 86/364 (23%), Positives = 141/364 (38%), Gaps = 48/364 (13%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN--SF 190
           + +      F   +P  +   T    LDL  N ++    D F+S   L+ L+L+ N  S 
Sbjct: 14  RAVLCHRKRF-VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
           +E     NL    NL+TL L  N+          GL      S+L +L++  N++   L 
Sbjct: 71  VEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGL------SNLTKLDISENKIVILLD 121

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
                L NL+ LE+  N  L  I   +   L  LE+L L    +     E+   L  + V
Sbjct: 122 YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369
           L L        I D   + L  L+ L +   S+      ++ + +    L  L I +  L
Sbjct: 181 LRLRHLNIN-AIRDYSFKRLYRLKVLEI---SHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 370 GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR 429
                  +R+   L  L L+   IS    S   +L   L E+ + G  L+          
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLA---------- 285

Query: 430 FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISN 488
                 +    F G        L    LR L++S N +  ++ +SV  ++  L TL++ +
Sbjct: 286 -----VVEPYAFRG--------LNY--LRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329

Query: 489 NNLS 492
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 9e-24
 Identities = 70/315 (22%), Positives = 122/315 (38%), Gaps = 30/315 (9%)

Query: 121 DLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL 166
           +   LDL  N                + L+L+ N  ++  P    N+ NL +L L SN L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 167 QGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG 225
           +  IP G F+ L++L  LD+S N  +   L      L NL++L++  N           G
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLE 284
           L      +SL +L L    LT     +L +L  L  L L + + + +I   S   L  L+
Sbjct: 151 L------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLK 203

Query: 285 ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS 344
            L ++          +      +  L ++       +    +R+L  L  L+L     S+
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIST 262

Query: 345 LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQL 404
           +  +     +   +L+ + +   QL    P   R    L  L ++   ++ TL       
Sbjct: 263 IEGS-MLHELL--RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS 318

Query: 405 NLTLDELDVGGNHLS 419
              L+ L +  N L+
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 4e-23
 Identities = 69/368 (18%), Positives = 127/368 (34%), Gaps = 69/368 (18%)

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTS 290
            +    L+LG N++            +L  LEL  N  + ++ P +  NL  L  L L S
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           N++       F  LS +  L++S+N+    + D   ++L +L+ L +          N  
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV--------GDN-- 138

Query: 351 FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDE 410
                   L Y+                    L  L L   +++         L+  L  
Sbjct: 139 -------DLVYIS----------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIV 180

Query: 411 LDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS 470
           L +   +++                +    F+         L +L  + L+IS      +
Sbjct: 181 LRLRHLNIN---------------AIRDYSFKR--------LYRL--KVLEISHWPYLDT 215

Query: 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP- 529
           +  +      L +L I++ NL+ +               L+ +RFL LS N +S  I   
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--------LVYLRFLNLSYNPIS-TIEGS 266

Query: 530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCK-LSALHI 588
            L     +  + L   QL+  +  +    +  L +L +  N    T+   +   +  L  
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 589 LDLSHNNL 596
           L L  N L
Sbjct: 325 LILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 119 LKDLEYLDLSLNNFKV--------------LDLSNNGFNSTLPHWLFNITNLLSLDLSSN 164
           L +L  L L  N  K+              LD+S N     L +   ++ NL SL++  N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 165 DLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
           DL   I    FS LNSL+ L L   + L    +  L  L  L  L+L     +       
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTF 282
             L        L  LE+ +      +  +  Y  NL  L + + + L ++P  ++ +L +
Sbjct: 197 KRL------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVY 249

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
           L  L L+ N ++        +L  ++ ++L   Q    +     R L  L  L++
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNV 303

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 3e-21
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 24/222 (10%)

Query: 112 ISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
           +   + Q L +L+ L++               LN+ + L L      S     L ++  L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           + L L   ++       F  L  L++L++S   +L+  ++ N     NL +L ++    +
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLT 237

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP- 275
                 +  L        L  L L YN ++      L  L  L+ ++L     L  + P 
Sbjct: 238 AVPYLAVRHL------VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY 290

Query: 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           +   L +L  L ++ NQ+       F  +  +  L L  N  
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 18/202 (8%)

Query: 404 LNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWSSNLTKLYLRDLD 461
           +      LD+G N +   +       FP    ++L+ N      P   +NL  L  R L 
Sbjct: 30  IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL--RTLG 86

Query: 462 ISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN 520
           +  N +   IP  V   L  L  L IS N +  + +  F          L  ++ L + +
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD--------LYNLKSLEVGD 137

Query: 521 NHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 579
           N L   I   +    + ++ L L +  L+ +IP      +  L +LRLR  + N      
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 580 LCKLSALHILDLSHNNLLGPIP 601
             +L  L +L++SH   L  + 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMT 217

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 2e-24
 Identities = 89/480 (18%), Positives = 165/480 (34%), Gaps = 67/480 (13%)

Query: 134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEG 193
           ++D S NG    +P  L        L++S N +         SL+ L++L +S N     
Sbjct: 4   LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN----- 55

Query: 194 QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL 253
                      +Q L                   E      L  L+L +N+L     IS 
Sbjct: 56  ----------RIQYLD----------ISVFKFNQE------LEYLDLSHNKLVK---ISC 86

Query: 254 GYLKNLRYLELWYNSFLGSIPPS--LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 311
               NL++L+L +N+   ++P     GN++ L+ L L++  +          L+  +VL 
Sbjct: 87  HPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 312 LSDNQWEGFITDAHLRNLTSLE-ELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 370
           +    +        L++  +    +            ++S   +   +L  +        
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 371 PKF----PTWLRNQTELTTLVLNSASISDTLPSWFLQL--NLTLDELDVGGNHLSGRIPN 424
             +       L+   +L+ L LN+   +       LQL  + T+    +    L G++  
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 425 TLVFRFPGSV------DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNL 478
                   S+       + S+ F  P        + + +++  +S   +   +  S   +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS--KI 323

Query: 479 KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSL 536
              L L  SNN L+D    N           L  +  L+L  N L    +I         
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGH--------LTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           +  LD+ +N +S +          SL  L + SN    TI   L     + +LDL  N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 7e-22
 Identities = 87/454 (19%), Positives = 161/454 (35%), Gaps = 41/454 (9%)

Query: 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ 214
           +   +D S N L   +P   S      +L++S N   E   + ++ +L  L+ L +S N+
Sbjct: 1   SEFLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELW-TSDILSLSKLRILIISHNR 56

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274
                        E      L  L+L +N+L     IS     NL++L+L +N+   ++P
Sbjct: 57  IQYLDISVFKFNQE------LEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA-FDALP 106

Query: 275 PS--LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSL 332
                GN++ L+ L L++  +          L+  +VL +    +        L++    
Sbjct: 107 ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN-T 165

Query: 333 EELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSAS 392
           E L ++  +N    F +         L    I+      K   +L    +L T       
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN------ 219

Query: 393 ISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNL 452
                       NLTL+ ++   N    RI   +         +S+ + +G +     + 
Sbjct: 220 --------PKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 453 TKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLT 512
           +   L+ L I     +          +       SN N+ + T +            +  
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIF-----SNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 513 IRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG--ESMPSLSILRLRSN 570
              L  SNN L+  +  +  + + +++L L  NQL   +         M SL  L +  N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQN 384

Query: 571 HFNGTIPSELC-KLSALHILDLSHNNLLGPIPYC 603
             +       C    +L  L++S N L   I  C
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 85/483 (17%), Positives = 167/483 (34%), Gaps = 51/483 (10%)

Query: 120 KDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSN 164
           +    L++S N                ++L +S+N     L   +F     L  LDLS N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHN 79

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
            L   I        +L+ LDLS N+F    + +  G +  L+ L LS           I 
Sbjct: 80  KLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 225 GLSEC-----INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGN 279
            L+       +  +   + +    Q      + + +  N  +  +   S        L N
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL-- 337
           +  + E    S  ++           +   L   +  W  FI    L   T++   S+  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 338 --IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD 395
             ++       F+ S   +    +  +V   +     +       + +       +    
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI--YEIFSNMNIKNFTVSGTRM 314

Query: 396 TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV---DLSSNRFEGPIPLWSSNL 452
                  +++     LD   N L+  +           +    L  N+ +  +   +   
Sbjct: 315 VHMLCPSKIS-PFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKE-LSKIAEMT 370

Query: 453 TKLY-LRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510
           T++  L+ LDIS NS++    +      K LL+L +S+N L+D         I   +   
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--------TIFRCLPPR 422

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
           + +  L L +N +   IP  +     +  L++  NQL  ++P  I + + SL  + L +N
Sbjct: 423 IKV--LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 571 HFN 573
            ++
Sbjct: 479 PWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 85/436 (19%), Positives = 155/436 (35%), Gaps = 56/436 (12%)

Query: 118 QLKDLEYLDLSLN-----------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSND 165
             ++LEYLDLS N           N K LDLS N F++      F N++ L  L LS+  
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 166 LQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG 225
           L+       + LN  ++L + G ++ E +   +   L +  T  L +   + +   FI  
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKE---DPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI---------PPS 276
           +S     ++L    +            L  L  L+      N  L +I            
Sbjct: 184 VSVK-TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 277 LGNLTFLEELYLTSNQMNG-----KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
           L   T +    +++ ++ G      F  S   L A+ + ++  +   GF         ++
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-FGFPQSYIYEIFSN 301

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
           +   +   +    +               +L      L         + TEL TL+L   
Sbjct: 302 MNIKNFTVSGTRMVHML-CPSK--ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 392 SIS--DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV---DLSSNRF-EGPI 445
            +     +     Q+  +L +LD+  N +S          +  S+   ++SSN   +   
Sbjct: 359 QLKELSKIAEMTTQMK-SLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
                 +  L L       N I  SIP+ V  L+ L  L +++N L  + +  F      
Sbjct: 417 RCLPPRIKVLDL-----HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD----- 465

Query: 506 SIGSLLTIRFLVLSNN 521
               L +++ + L  N
Sbjct: 466 ---RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 9/236 (3%)

Query: 83  SIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGF 142
           SI  + L          Y   ++  L      S +      Y+    +N  + + + +G 
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE-GQLSRNLGT 201
                     I+  L LD S+N L   + +    L  L+ L L  N   E  +++     
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
           + +LQ L +S N  S +          C  + SL  L +  N LT  +   L     ++ 
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGD-----CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKV 425

Query: 262 LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           L+L  N  + SIP  +  L  L+EL + SNQ+       F +L++++ + L  N W
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 49/362 (13%), Positives = 104/362 (28%), Gaps = 15/362 (4%)

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           +    L +  N         + +L+ L  L ++ N++       F     +  L+LS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 317 WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
               +         +L+ L L   +  +L     F  +   +L++L +    L       
Sbjct: 81  ----LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS--QLKFLGLSTTHLEKSSVLP 134

Query: 377 LRNQTELT-TLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--- 432
           + +       LVL         P      N     +    N     I +  V        
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 433 ---SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNN 489
                 L  N+    + + +   T   L +L ++      +    +  L    T+   + 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 490 NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549
           +   +       +   S  SL  +    + ++          +  S M+  +   +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR- 313

Query: 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSA 609
            +       +     L   +N    T+      L+ L  L L  N  L  +       + 
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQ 372

Query: 610 MT 611
           M 
Sbjct: 373 MK 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 1e-23
 Identities = 74/394 (18%), Positives = 141/394 (35%), Gaps = 46/394 (11%)

Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSN 291
           + +  ++L  N +      S   L++L++L++   +    I   +   L+ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           Q       +F  L+ + VL L+        ++    + LTSLE L L   +   +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 351 FDWIPPFKLRYLVIRY-----------YQLGPKFPTWLRNQTELTTLVLNSASISDTLPS 399
           F  +   +   L + +                K  T LR  + +T   +N   +      
Sbjct: 150 FLNMR--RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS-ITLQDMNEYWLGWEKCG 206

Query: 400 WFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGS--------------VDLSSNRFEGPI 445
              +   ++  LD+ GN     +         G+                     F+ P 
Sbjct: 207 NPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIP 504
                 L    ++  D+S + I  ++ +SV  +   L  L ++ N ++ + +N F G   
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG--- 321

Query: 505 ESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLS 563
                L  +  L LS N L   I     +N   ++ LDL  N +   +       +P+L 
Sbjct: 322 -----LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 564 ILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNL 596
            L L +N    ++P     +L++L  + L  N  
Sbjct: 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 6e-23
 Identities = 73/400 (18%), Positives = 133/400 (33%), Gaps = 52/400 (13%)

Query: 204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI-SLGYLKNLRYL 262
           ++  + LSLN  +         L +      L  L++        +   +   L +L  L
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQD------LQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 263 ELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKF--PESFGQLSAIRVLELSDNQWEG 319
           +L YN     +       L  LE L LT   ++G       F  L+++ +L L DN  + 
Sbjct: 85  KLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 320 FITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL-- 377
               +   N+     L L      S+                L +    L      WL  
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 378 ------RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP 431
                    T +TTL L+     +++   F           +  ++              
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-------- 254

Query: 432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNN 490
                    F+ P       L    ++  D+S + I  ++ +SV  +   L  L ++ N 
Sbjct: 255 ---SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310

Query: 491 LSDMTNNNFSG---------------EIPESI-GSLLTIRFLVLSNNHLSGEIPP-SLKN 533
           ++ + +N F G                I   +  +L  +  L LS NH+   +   S   
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLG 369

Query: 534 CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573
              +  L L  NQL  ++P  I + + SL  + L +N ++
Sbjct: 370 LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 50/255 (19%), Positives = 89/255 (34%), Gaps = 38/255 (14%)

Query: 119 LKDLEYLDLSLNNF----------------KVLDLSNNGFNSTLPHWLF-NITNLLSLDL 161
           L +LE L L+  N                 ++L L +N      P   F N+     LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGT---------LCNLQTLKLSL 212
           + N ++    +   +        L  +S     ++                ++ TL LS 
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 213 NQFSGEVSDFIDGL-------SECINSSSLARLELGYNQLTGNLPISLGYLK--NLRYLE 263
           N F   ++             S  +++S       G+         +   L+   ++  +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 264 LWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT 322
           L  +  + ++  S+  + T LE+L L  N++N     +F  L+ +  L LS N     I 
Sbjct: 282 LSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-ID 339

Query: 323 DAHLRNLTSLEELSL 337
                NL  LE L L
Sbjct: 340 SRMFENLDKLEVLDL 354

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 61/253 (24%), Positives = 89/253 (35%), Gaps = 36/253 (14%)

Query: 119 LKDLEYLDLS---------------LNNFKVLDLSNNGFNSTLPHWLFNIT--NLLSLDL 161
           L  LE L L                +  F VLDL+ N   S     L N    +   L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 162 SSNDLQ--------GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           SS  LQ         +         S+  LDLSGN F E    R    +   +   L L+
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 214 QFSGEVSDF----IDGLSEC----INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265
                 S F               + +S +   +L  +++   L     +  +L  L L 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 266 YNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDA 324
            N  +  I   +   LT L +L L+ N +       F  L  + VL+LS N     + D 
Sbjct: 308 QNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ 365

Query: 325 HLRNLTSLEELSL 337
               L +L+EL+L
Sbjct: 366 SFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 23/238 (9%)

Query: 115 SLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGF 174
            LL  +   +  L L++  + D++            F  T++ +LDLS N  +  +   F
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 175 SSL---NSLQLLDLSGNSFLEGQLSRNLGTLC-----------NLQTLKLSLNQFSGEVS 220
                   +Q L LS +  +                        ++T  LS ++    + 
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 221 DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGN 279
                 ++      L +L L  N++      +   L +L  L L  N FLGSI      N
Sbjct: 293 SVFSHFTD------LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFEN 345

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
           L  LE L L+ N +     +SF  L  ++ L L  NQ +  + D     LTSL+++ L
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 58/338 (17%), Positives = 101/338 (29%), Gaps = 42/338 (12%)

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
            +P  +        + L+ N +      SF +L  ++ L++        I +   R L+S
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF--PTWLRNQTELTTLVLN 389
           L  L L       L     F+ +    L  L +    L        + +  T L  LVL 
Sbjct: 81  LIILKLDYNQFLQLETGA-FNGLA--NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
             +I    P+ F         LD+  N +                 +             
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SICEEDLLN---FQG 179

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGN---LKQLLTLVISNNNLSDMTNNNFSGEIPES 506
            + T L L  + +   +      +  GN      + TL +S N   +     F   I  +
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 507 IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD-------SLDLGENQLSGNIPAWIGESM 559
               L +       +           N +          + DL ++++   +   +    
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHF 298

Query: 560 PSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNL 596
             L  L L  N  N  I       L+ L  L+LS N L
Sbjct: 299 TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 107 ELRGKISPSLLQLKDLEYLDLSLNNFKVL---DLSNNGFNSTLPHWLFNITNLLSLDLSS 163
            L  +   +  +   +  LDLS N FK        +    + +   + + +  +      
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 164 NDLQGDIPDGFSSL--NSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSLNQFSGEVS 220
            + +      F  L  + ++  DLS +      L +++     +L+ L L+ N+ +    
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 221 DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGN 279
           +   GL      + L +L L  N L          L  L  L+L YN  + ++   S   
Sbjct: 317 NAFWGL------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLG 369

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           L  L+EL L +NQ+       F +L++++ + L  N W
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 2e-23
 Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 33/240 (13%)

Query: 119 LKDLEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
           L  LE L LS N             + L +  N            +  ++ ++L +N L+
Sbjct: 99  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 168 -GDIPDG-FSSLNSLQLLDLSGNSFLEGQLSR-NLGTLCNLQTLKLSLNQFSGEVSDFID 224
              I +G F  +  L  + ++        ++    G   +L  L L  N+ +   +  + 
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADT-----NITTIPQGLPPSLTELHLDGNKITKVDAASLK 213

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE 284
           GL      ++LA+L L +N ++     SL    +LR L L  N  L  +P  L +  +++
Sbjct: 214 GL------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQ 266

Query: 285 ELYLTSNQM----NGKF--PESFGQLSAIRVLELSDNQWEGF-ITDAHLRNLTSLEELSL 337
            +YL +N +    +  F  P    + ++   + L  N  + + I  +  R +     + L
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 70/320 (21%), Positives = 115/320 (35%), Gaps = 56/320 (17%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
            +LDL NN           N+ NL +L L +N +    P  F+ L  L+ L LS N    
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN---- 110

Query: 193 GQLSR-NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI 251
            QL          LQ L++  N+ +       +GL      + +  +ELG N L  +  I
Sbjct: 111 -QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL------NQMIVVELGTNPLK-SSGI 162

Query: 252 SLGY---LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308
             G    +K L Y+ +   + + +IP  L     L EL+L  N++      S   L+ + 
Sbjct: 163 ENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368
            L LS N     + +  L N   L EL L   +N+ L                       
Sbjct: 220 KLGLSFNSISA-VDNGSLANTPHLRELHL---NNNKLV---------------------- 253

Query: 369 LGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT-----LDELDVGGNHLS-GRI 422
              K P  L +   +  + L++ +IS    + F              + +  N +    I
Sbjct: 254 ---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 423 PNTLVFRFPG--SVDLSSNR 440
             +         +V L + +
Sbjct: 311 QPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 55/260 (21%), Positives = 88/260 (33%), Gaps = 53/260 (20%)

Query: 120 KDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSND 165
            D   LDL  N                  L L NN  +   P     +  L  L LS N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 166 LQG--------------------DIPDG-FSSLNSLQLLDLSGNSFLEGQLSRN-LGTLC 203
           L+                      +    F+ LN + +++L  N      +       + 
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 263
            L  ++++    +  +   +          SL  L L  N++T     SL  L NL  L 
Sbjct: 172 KLSYIRIADTNIT-TIPQGL--------PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 264 LWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ-----W 317
           L +NS + ++   SL N   L EL+L +N++  K P        I+V+ L +N       
Sbjct: 223 LSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 318 EGFITDAHLRNLTSLEELSL 337
             F    +     S   +SL
Sbjct: 281 NDFCPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 65/319 (20%), Positives = 122/319 (38%), Gaps = 45/319 (14%)

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTS 290
               A L+L  N++T         LKNL  L L  N  +  I P +   L  LE LYL+ 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSK 109

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           NQ+  + PE       ++ L + +N+    +  +    L  +  + L   +N      + 
Sbjct: 110 NQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL--GTN-----PLK 158

Query: 351 FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDE 410
              I                       +   +L+ + +   +I+ T+P        +L E
Sbjct: 159 SSGIE------------------NGAFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTE 196

Query: 411 LDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
           L + GN ++ ++    +        + LS N          +N     LR+L ++ N + 
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH--LRELHLNNNKLV 253

Query: 469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEI 527
             +P  + + K +  + + NNN+S + +N+F    P       +   + L +N +   EI
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 528 PPSLKNC-SLMDSLDLGEN 545
            PS   C  +  ++ LG  
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 65/334 (19%), Positives = 113/334 (33%), Gaps = 78/334 (23%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
           L  +P  L        L L +N++       F  L  +  L L +N+    I+      L
Sbjct: 43  LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPL 99

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
             LE L L   S + L        +P    +                      L  L ++
Sbjct: 100 VKLERLYL---SKNQLKE------LPEKMPK---------------------TLQELRVH 129

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
              I+    S F  LN  +  +++G N L              S  + +  F+G      
Sbjct: 130 ENEITKVRKSVFNGLN-QMIVVELGTNPLK-------------SSGIENGAFQG------ 169

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509
             + KL    + I+  +I  +IPQ  G    L  L +  N ++ +   +  G        
Sbjct: 170 --MKKL--SYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKG-------- 214

Query: 510 LLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 568
           L  +  L LS N +S  +   SL N   +  L L  N+L   +P  +      + ++ L 
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLH 271

Query: 569 SNHFNG------TIPSELCKLSALHILDLSHNNL 596
           +N+ +         P    K ++   + L  N +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 119 LKDLEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
           +K L Y+ ++  N              L L  N         L  + NL  L LS N + 
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 168 GDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL 226
             + +G  ++   L+ L L+ N  ++  +   L     +Q + L  N  S   S+     
Sbjct: 230 -AVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 227 SECINSSSLARLELGYNQLTGNL--PISLGYLKNLRYLELWYN 267
                 +S + + L  N +      P +   +     ++L   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 7e-23
 Identities = 73/434 (16%), Positives = 147/434 (33%), Gaps = 68/434 (15%)

Query: 170 IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229
           I            + +   +        ++ TL N + +    +      +  +D     
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFR-- 69

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYL 288
                +  L L   Q+      +  Y   ++ L + +N+ +  +PP    N+  L  L L
Sbjct: 70  ----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL 124

Query: 289 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348
             N ++      F     +  L +S+N  E  I D   +  TSL+ L L   S++ L+ +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL---SSNRLT-H 179

Query: 349 ISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTL 408
           +    IP   L +  + Y  L     + L     +  L  +  SI+       ++L    
Sbjct: 180 VDLSLIP--SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELT--- 229

Query: 409 DELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
             L +  N+L+              ++                     L ++D+S+N + 
Sbjct: 230 -ILKLQHNNLT---------DTAWLLNYPG------------------LVEVDLSYNELE 261

Query: 469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
             +      +++L  L ISNN L           +      + T++ L LS+NHL   + 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVA---------LNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 529 PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588
            +      +++L L  N +   +      +  +L  L L  N ++      L     +  
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRAL--FRNVAR 365

Query: 589 LDLSHNNLLGPIPY 602
             +   +    I Y
Sbjct: 366 PAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 69/455 (15%), Positives = 149/455 (32%), Gaps = 89/455 (19%)

Query: 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP 171
           + P   + K ++        F  + +     +         + N   +   ++ ++    
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 172 DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
               S   ++LL+L+     E                 +    F+               
Sbjct: 63  ALLDSFRQVELLNLNDLQIEE-----------------IDTYAFAY-------------- 91

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTS 290
           + ++ +L +G+N +    P     +  L  L L  N  L S+P  +  N   L  L +++
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSN 150

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           N +     ++F   ++++ L+LS N+    +T   L  + SL   ++     S+L+  I+
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206

Query: 351 FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDE 410
                                           +  L  +  SI+       ++L      
Sbjct: 207 --------------------------------VEELDASHNSINVVRGPVNVELT----I 230

Query: 411 LDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS 470
           L +  N+L+      L +     VDLS N  E  +      + +  L  L IS N +  +
Sbjct: 231 LKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR--LERLYISNNRLV-A 286

Query: 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS 530
           +      +  L  L +S+N+L           +  +      +  L L +N +   +  S
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL---------HVERNQPQFDRLENLYLDHNSIV-TLKLS 336

Query: 531 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
                 + +L L  N    N    +  ++   ++ 
Sbjct: 337 --THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 75/374 (20%), Positives = 124/374 (33%), Gaps = 40/374 (10%)

Query: 229 CINSSSLARLELGYNQLTGNLPISLG-----YLKNLRYLELWYNSFLGSIPPS-LGNLTF 282
           CI+S+           +               L N + +    ++ +  +P + L +   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQ 70

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN 342
           +E L L   Q+      +F     I+ L +  N    ++     +N+  L  L L +   
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL 402
           SSL   I F   P  KL  L +    L        +  T L  L L+S  ++    S   
Sbjct: 130 SSLPRGI-FHNTP--KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186

Query: 403 QLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDI 462
            L       +V  N LS  +   +       +D S N         +  LT L L     
Sbjct: 187 SLF----HANVSYNLLS-TLAIPIAVE---ELDASHNSINVVRGPVNVELTILKL----- 233

Query: 463 SFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH 522
             N++       + N   L+ + +S N L  +  + F          +  +  L +SNN 
Sbjct: 234 QHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK--------MQRLERLYISNNR 283

Query: 523 LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCK 582
           L   +    +    +  LDL  N L  ++          L  L L  N    T+      
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV-TLKLST-- 337

Query: 583 LSALHILDLSHNNL 596
              L  L LSHN+ 
Sbjct: 338 HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 65/369 (17%), Positives = 126/369 (34%), Gaps = 46/369 (12%)

Query: 113 SPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLS 158
               + L + + +    +                ++L+L++        +       +  
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSLNQFSG 217
           L +  N ++   P  F ++  L +L L  N      L R +      L TL +S N    
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLER 155

Query: 218 EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL 277
              D           +SL  L+L  N+LT    + L  + +L +  + YN        +L
Sbjct: 156 IEDDTFQAT------TSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STL 201

Query: 278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
                +EEL  + N +N        +L    +L+L  N        A L N   L E+ L
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNN---LTDTAWLLNYPGLVEVDL 255

Query: 338 IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL 397
              S + L   +   ++   +L  L I   +L      + +    L  L L+   +   +
Sbjct: 256 ---SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 398 PSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG-PIPLWSSNLTKLY 456
                Q +  L+ L +  N +   +  +       ++ LS N ++   +     N+ +  
Sbjct: 311 ERNQPQFD-RLENLYLDHNSIV-TLKLSTHHTLK-NLTLSHNDWDCNSLRALFRNVARPA 367

Query: 457 LRDLDISFN 465
           + D D    
Sbjct: 368 VDDADQHCK 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (254), Expect = 9e-23
 Identities = 68/371 (18%), Positives = 120/371 (32%), Gaps = 108/371 (29%)

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
           +  C+N+   A L +G + LT  LP  L    ++  L +  N+ L S+P     L     
Sbjct: 34  MRACLNNG-NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPALPPELR---T 85

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
           L ++ NQ+    P     L  + +                    + L +L +     +SL
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
                                       P        L  L ++   ++ +LP+   +L 
Sbjct: 137 ----------------------------PVLPPG---LQELSVSDNQLA-SLPALPSELC 164

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
               +L    N L+  +P                          S L +L +     S N
Sbjct: 165 ----KLWAYNNQLT-SLPMLP-----------------------SGLQELSV-----SDN 191

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
            +  S+P     L +L      NN L+          +P     L   + L++S N L+ 
Sbjct: 192 QLA-SLPTLPSELYKL---WAYNNRLT---------SLPALPSGL---KELIVSGNRLT- 234

Query: 526 EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSA 585
            +P        +  L +  N+L+ ++P         L  L +  N     +P  L  LS+
Sbjct: 235 SLPVLPSE---LKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 586 LHILDLSHNNL 596
              ++L  N L
Sbjct: 286 ETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 90/458 (19%), Positives = 144/458 (31%), Gaps = 118/458 (25%)

Query: 129 LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188
            N   VL++  +G  +TLP  L    ++ +L +  N+L   +P        L+ L++SGN
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGN 91

Query: 189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN 248
                 L      L  L      L                    S L +L +  NQLT +
Sbjct: 92  QLTS--LPVLPPGLLELSIFSNPLTHLPALP-------------SGLCKLWIFGNQLT-S 135

Query: 249 LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308
           LP+       L+ L +  N  L S+P     L    +L+  +NQ+    P     L   +
Sbjct: 136 LPVLPP---GLQELSVSDNQ-LASLPALPSELC---KLWAYNNQLT-SLPMLPSGL---Q 184

Query: 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368
            L +SDNQ            L SL  L                    P +L  L     +
Sbjct: 185 ELSVSDNQ------------LASLPTL--------------------PSELYKLWAYNNR 212

Query: 369 LGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF 428
           L    P        L  L+++   ++ +LP    +L     EL V GN L+         
Sbjct: 213 L-TSLPALPSG---LKELIVSGNRLT-SLPVLPSELK----ELMVSGNRLTS-------- 255

Query: 429 RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISN 488
                           +P+  S L  L +    ++       +P+S+ +L    T+ +  
Sbjct: 256 ----------------LPMLPSGLLSLSVYRNQLT------RLPESLIHLSSETTVNLEG 293

Query: 489 NNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548
           N LS         E        +T       +  +               +L L      
Sbjct: 294 NPLS---------ERTLQALREIT--SAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
             +PA  GE  P+                  L +LS  
Sbjct: 343 --VPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 58/253 (22%), Positives = 83/253 (32%), Gaps = 42/253 (16%)

Query: 111 KISPSLLQLKDLEYLDLSLN-------NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS 163
            +      L +L      L            L +  N   S LP        L  L +S 
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSD 150

Query: 164 NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
           N L   +P   S L  L   +         QL+        LQ L +S NQ +  +    
Sbjct: 151 NQLA-SLPALPSELCKLWAYNN--------QLTSLPMLPSGLQELSVSDNQLA-SLPTLP 200

Query: 224 DGLSE------CINS-----SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS 272
             L +       + S     S L  L +  N+LT +LP+       L+ L +  N  L S
Sbjct: 201 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS---ELKELMVSGN-RLTS 255

Query: 273 IPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSL 332
           +P     L     L +  NQ+  + PES   LS+   + L  N      T   LR +TS 
Sbjct: 256 LPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSA 310

Query: 333 EELSLIKTSNSSL 345
              S         
Sbjct: 311 PGYSGPIIRFDMA 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 1e-17
 Identities = 63/334 (18%), Positives = 108/334 (32%), Gaps = 50/334 (14%)

Query: 122 LEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQ 181
           L  L       + L++S N   ++LP     +  L         L        +  + L 
Sbjct: 73  LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLC 124

Query: 182 LLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELG 241
            L + GN     QL+        LQ L +S NQ        +  L      S L +L   
Sbjct: 125 KLWIFGN-----QLTSLPVLPPGLQELSVSDNQ--------LASLPALP--SELCKLWAY 169

Query: 242 YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESF 301
            NQLT +LP+       L+ L +  N  L S+P     L    +L+  +N++    P   
Sbjct: 170 NNQLT-SLPMLPS---GLQELSVSDNQ-LASLPTLPSELY---KLWAYNNRLT-SLPALP 220

Query: 302 GQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRY 361
             L   + L +S N+             + L+EL +     +SL    S        L  
Sbjct: 221 SGL---KELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPMLPS-------GLLS 265

Query: 362 LVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR 421
           L +   QL  + P  L + +  TT+ L    +S+   +      +T      G       
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE--RTLQALREITSAPGYSGPIIRFDM 322

Query: 422 IPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKL 455
              +           +++          +   + 
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 40/241 (16%)

Query: 118 QLKDLEYLDLSLNNF----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
               L+ L +S N              L   NN   S LP      + L  L +S N L 
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPM---LPSGLQELSVSDNQLA 194

Query: 168 GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS 227
             +P   S L  L   +    S               L+ L +S N+        +  L 
Sbjct: 195 -SLPTLPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGNR--------LTSLP 237

Query: 228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELY 287
                S L  L +  N+LT +LP+       L  L ++ N  L  +P SL +L+    + 
Sbjct: 238 VLP--SELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290

Query: 288 LTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDA--HLRNLTSLEELSLIKTSNSSL 345
           L  N ++ +  ++  ++++         +++     A    R L       L+       
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

Query: 346 S 346
           +
Sbjct: 351 A 351

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 69/301 (22%), Positives = 114/301 (37%), Gaps = 24/301 (7%)

Query: 127 LSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
           LS +   +   S+   NS +P  L     + SLDLS+N +            +LQ L L+
Sbjct: 28  LSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84

Query: 187 GN--SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ 244
            N  + +E     +LG   +L+ L LS N  S   S +   L      SSL  L L  N 
Sbjct: 85  SNGINTIEEDSFSSLG---SLEHLDLSYNYLSNLSSSWFKPL------SSLTFLNLLGNP 135

Query: 245 LTGNLPISL-GYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFG 302
                  SL  +L  L+ L +        I       LTFLEEL + ++ +    P+S  
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL----IKTSNSSLSFNISFDWIPP-F 357
            +  +  L L   Q    + +  +   +S+E L L    + T + S       + +   F
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH 417
             R + I    L  +    L   + L  L  +   +  ++P        +L ++ +  N 
Sbjct: 255 TFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312

Query: 418 L 418
            
Sbjct: 313 W 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 34/252 (13%)

Query: 111 KISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITN 155
            IS S LQ   +L+ L L+              L + + LDLS N  ++    W   +++
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 156 LLSLDLSSNDLQGDIPDG--FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           L  L+L  N  +  + +   FS L  LQ+L +           ++   L  L+ L++  +
Sbjct: 126 LTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF---- 269
                    +  +       +++ L L   Q    L I +    ++  LEL         
Sbjct: 185 DLQSYEPKSLKSI------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 270 LGSIPP----SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
              +      SL        + +T   +  +  +   Q+S +  LE S NQ +  + D  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

Query: 326 LRNLTSLEELSL 337
              LTSL+++ L
Sbjct: 297 FDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 32/223 (14%)

Query: 119 LKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSS 163
           L  LE+LDLS N              +   L+L  N + +     LF ++T L  L + +
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 164 NDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222
            D    I    F+ L  L+ L++  +     +  ++L ++ N+  L L + Q    +  F
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 223 IDGLSECINSSSLARLELGYNQLTGN--------LPISLGYLKNLRYLELWYNSFLGSIP 274
           +D  S      S+  LEL    L              SL      R +++   S L  + 
Sbjct: 218 VDVTS------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVM 270

Query: 275 PSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             L  ++ L EL  + NQ+       F +L++++ + L  N W
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 58/343 (16%), Positives = 112/343 (32%), Gaps = 80/343 (23%)

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTS 290
           + ++  L+L  N++T      L    NL+ L L  N  + +I   S  +L  LE L L+ 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSY 109

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           N ++      F  LS++  L L  N ++     +   +LT L+ L         +    +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR--------VGNMDT 161

Query: 351 FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDE 410
           F  I                          T L  L ++++ +    P     +   +  
Sbjct: 162 FTKIQR------------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSH 202

Query: 411 LDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS 470
           L +                      L     +      +S++  L LRD D+     +  
Sbjct: 203 LILHMKQHI---------------LLLEIFVDV-----TSSVECLELRDTDLDTFHFSEL 242

Query: 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS 530
                 +L +  T                              R + +++  L  ++   
Sbjct: 243 STGETNSLIKKFTF-----------------------------RNVKITDESLF-QVMKL 272

Query: 531 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573
           L   S +  L+   NQL  ++P  I + + SL  + L +N ++
Sbjct: 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 27/229 (11%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV---DLS 437
             + +L L++  I+    S   +    L  L +  N ++  I     F   GS+   DLS
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGIN-TIEED-SFSSLGSLEHLDLS 108

Query: 438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNN-LSDMT 495
            N        W   L+ L    L++  N        S+  +L +L  L + N +  + + 
Sbjct: 109 YNYLSNLSSSWFKPLSSL--TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 496 NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI 555
             +F+G        L  +  L +  + L    P SLK+   +  L L   Q    +    
Sbjct: 167 RKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 556 GESMPSLSILRLRSNHFNGTIPSELC--------KLSALHILDLSHNNL 596
            +   S+  L LR    +    SEL         K      + ++  +L
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 55/288 (19%), Positives = 99/288 (34%), Gaps = 37/288 (12%)

Query: 125 LDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD 184
           +  + N +K+  ++++     L     +  N+  LDLS N L        +    L+LL+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ 244
           LS N   E   + +L +L  L+TL L+ N            + E +   S+  L    N 
Sbjct: 65  LSSNVLYE---TLDLESLSTLRTLDLNNNY-----------VQELLVGPSIETLHAANNN 110

Query: 245 LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG-KFPESFGQ 303
           ++    +S    +  + + L  N          G  + ++ L L  N+++   F E    
Sbjct: 111 ISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP-----FK 358
              +  L L  N             L +L            LS N    ++ P       
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTL-----------DLSSN-KLAFMGPEFQSAAG 215

Query: 359 LRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS-DTLPSWFLQLN 405
           + ++ +R  +L       LR    L    L        TL  +F +  
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 39/213 (18%), Positives = 70/213 (32%), Gaps = 23/213 (10%)

Query: 114 PSLLQLKDLEYLDLSLNNF---------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSN 164
             L  L  L  LDL+ N           + L  +NN   S +           ++ L++N
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRVSCSRG--QGKKNIYLANN 130

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
            +           + +Q LDL  N       +    +   L+ L L  N         I 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--------IY 182

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE 284
            +   +  + L  L+L  N+L   +         + ++ L  N  L  I  +L     LE
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240

Query: 285 ELYLTSNQMN-GKFPESFGQLSAIRVLELSDNQ 316
              L  N  + G   + F +   ++ +     +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 40/244 (16%)

Query: 111 KISPSLLQ-LKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITN 155
           +   SL Q   +++ LDLS N                ++L+LS+N    TL   L +++ 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81

Query: 156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR-NLGTLCNLQTLKLSLNQ 214
           L +LDL++N +Q           S++ L  + N      +SR +       + + L+ N+
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANN-----NISRVSCSRGQGKKNIYLANNK 131

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSI 273
            +                S +  L+L  N++   N          L +L L YN  +  +
Sbjct: 132 ITMLRDLDEGCR------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184

Query: 274 PPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE 333
              +     L+ L L+SN++       F   + +  + L +N+      +  LR   +LE
Sbjct: 185 KGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLE 240

Query: 334 ELSL 337
              L
Sbjct: 241 HFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 49/335 (14%), Positives = 107/335 (31%), Gaps = 59/335 (17%)

Query: 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315
               +  ++  +S   ++     +   ++EL L+ N ++          + + +L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 316 QWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 374
                + +   L +L++L  L L        + N                    +     
Sbjct: 69  V----LYETLDLESLSTLRTLDL--------NNN-------------------YV----- 92

Query: 375 TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG-- 432
             L     + TL   + +IS  +     Q       + +  N ++  + +          
Sbjct: 93  QELLVGPSIETLHAANNNIS-RVSCSRGQG---KKNIYLANNKIT-MLRDLDEGCRSRVQ 147

Query: 433 SVDLSSNRFEG-PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNL 491
            +DL  N  +       +++   L    L++ +N I   +   V    +L TL +S+N L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTL--EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

Query: 492 SDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI 551
           +          +     S   + ++ L NN L   I  +L+    ++  DL  N      
Sbjct: 204 A---------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 552 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
                     +  +  ++         E C +  L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 9e-17
 Identities = 55/403 (13%), Positives = 115/403 (28%), Gaps = 89/403 (22%)

Query: 170 IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229
           I +   + N  ++  ++ +S L+  L+    +  N++ L LS N  S   +  +      
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--- 57

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLT 289
              + L  L L  N L     + L  L  LR L+L  N         L     +E L+  
Sbjct: 58  ---TKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI 349
           +N ++             + + L++N+    + D      + ++ L         L  N 
Sbjct: 108 NNNISRVSCSRGQGK---KNIYLANNKITM-LRDLDEGCRSRVQYL--------DLKLN- 154

Query: 350 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLD 409
                   ++  +          F     +   L  L L    I D            L 
Sbjct: 155 --------EIDTV---------NFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLK 194

Query: 410 ELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING 469
            LD+  N L+  +                            +     +  + +  N +  
Sbjct: 195 TLDLSSNKLA-FMGPEF-----------------------QSAAG--VTWISLRNNKLV- 227

Query: 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
            I +++   + L    +  N                        R   ++   +      
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 572
           + + C++      G      ++PA          ++ L  +H 
Sbjct: 279 NEEECTVPTLGHYGAYCCE-DLPAPFA-----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 26/221 (11%)

Query: 378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVD 435
           +N        +  +S+     +   Q    + ELD+ GN LS +I    +  F     ++
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLN 64

Query: 436 LSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMT 495
           LSSN     + L   +L+ L  R LD++ N +     Q +     + TL  +NNN+S   
Sbjct: 65  LSSNVLYETLDL--ESLSTL--RTLDLNNNYV-----QELLVGPSIETLHAANNNIS--- 112

Query: 496 NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI 555
                  +  S G     + + L+NN ++          S +  LDL  N++     A +
Sbjct: 113 ------RVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 556 GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             S  +L  L L+ N     +  ++   + L  LDLS N L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 12/91 (13%)

Query: 111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGD- 169
            + P       + ++ L  N               +   L    NL   DL  N      
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-----------VLIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 170 IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG 200
           + D FS    +Q +       L GQ      
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
           I    +N +      + ++ L     A + +S  ++  L L  N  +    ++L   + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 587 HILDLSHNNL 596
            +L+LS N L
Sbjct: 61  ELLNLSSNVL 70

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 6e-22
 Identities = 88/502 (17%), Positives = 167/502 (33%), Gaps = 76/502 (15%)

Query: 127 LSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
            S     ++D SN      +P  L       +L LS N +        S L+ L++L LS
Sbjct: 28  FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLS 84

Query: 187 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
            N                +++L         +   F            L  L++ +N+L 
Sbjct: 85  HN---------------RIRSL---------DFHVF-LFN------QDLEYLDVSHNRLQ 113

Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPS--LGNLTFLEELYLTSNQMNGKFPESFGQL 304
               IS   + +LR+L+L +N F   +P     GNLT L  L L++ +           L
Sbjct: 114 N---ISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 305 SAIRV-LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLV 363
               + L+L     +G  T++     T++  L     S  S+  N+S + +   +L  + 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 364 IRYYQLG--PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQL--NLTLDELDVGGNHLS 419
           +          F + L     L  + L     +        Q      ++ L++    ++
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 420 GRIPNTLVFRFPGSV------DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473
            RI          ++       + +  F        S   ++ ++ L IS       +  
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 474 SVGNLKQLLTLVISNNNLSDMTNNNFSG---------------EIPESIGSLLTIRFLVL 518
              +      L  + N  +D      S                   +       +  L  
Sbjct: 350 --PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 519 SNNHL----SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574
            +  L    S     +      +  L+L  N L+G++   +    P + +L L +N    
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM- 463

Query: 575 TIPSELCKLSALHILDLSHNNL 596
           +IP ++  L AL  L+++ N L
Sbjct: 464 SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 97/487 (19%), Positives = 175/487 (35%), Gaps = 50/487 (10%)

Query: 118 QLKDLEYLDL-SLNNFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDGFS 175
            + +L   D+  L+  +VL LS+N    +L   +F    +L  LD+S N LQ  I     
Sbjct: 63  SISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQN-IS--CC 118

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
            + SL+ LDLS N F    + +  G L  L  L LS  +F       +  L       S 
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL-----SC 173

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
             L+L    + G    SL    N   L L ++           ++  L  L L++ ++N 
Sbjct: 174 ILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355
           +  +                          L N+T    L  I+T+         F W  
Sbjct: 233 ENCQRL------------MTFLSELTRGPTLLNVT----LQHIETTWKCSVKLFQFFWPR 276

Query: 356 PFKLRYLVIRYYQLG--PKFPTWLRNQTELTTLVLNSASISD--TLPSWFLQLNLTLDEL 411
           P  + YL I    +        +  ++T L +L++                 +   ++  
Sbjct: 277 P--VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 412 DVGGNHLSGRIPNTLVFRFPGS---VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
            +  +       + +    P S   ++ + N F   +    S L +L    L +  N + 
Sbjct: 335 MLSISDTP--FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT--LILQRNGLK 390

Query: 469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
            +  +     K + +L   + +L+ +     S     +     +I  L LS+N L+G + 
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLN----SHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 529 PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588
             L     +  LDL  N++  +IP  +   + +L  L + SN           +L++L  
Sbjct: 446 RCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQY 501

Query: 589 LDLSHNN 595
           + L  N 
Sbjct: 502 IWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 80/468 (17%), Positives = 159/468 (33%), Gaps = 69/468 (14%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG--FS 175
             +DLEYLD+S N  + +                 + +L  LDLS ND    +P    F 
Sbjct: 98  FNQDLEYLDVSHNRLQNISCC-------------PMASLRHLDLSFNDFD-VLPVCKEFG 143

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
           +L  L  L LS   F       +L  + +L    + L+  S  +        +  N++ L
Sbjct: 144 NLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 236 ARLELGYNQLTGNLPISLGYLKNL--RYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
             +    +  +  + +S+  L +L    ++L   +    +            L +T   +
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 294 NGKFPE-----SFGQLSAIRVLELSDNQWEGFITDAHLRN-LTSLEELSLIKTSNSSLSF 347
              +        F     +  L + +      I         T+L+ L +    N    F
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 348 NIS--FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
           +    +       ++ L I              + +  T L       +D++      L 
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCP--PSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
             L  L +  N L              +    +            N++ L    LD+S N
Sbjct: 378 -RLQTLILQRNGLK-------------NFFKVALMT--------KNMSSLET--LDVSLN 413

Query: 466 SI-NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS 524
           S+ + +  ++    + +L L +S+N L+          +   +   + +  L L NN + 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGS--------VFRCLPPKVKV--LDLHNNRIM 463

Query: 525 GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 572
             IP  + +   +  L++  NQL  ++P  + + + SL  + L  N +
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 7/235 (2%)

Query: 83  SIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGF 142
           +I  L +         +Y + A+  L  +   + + L   E L        +  LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTL 202
                    + ++   L+ + N     +  G S+L  LQ L L  N        +     
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFKVALMT 399

Query: 203 CNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 262
            N+ +L+      +   S   D    C  + S+  L L  N LTG++   L     ++ L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRT--CAWAESILVLNLSSNMLTGSVFRCL--PPKVKVL 455

Query: 263 ELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           +L  N  + SIP  + +L  L+EL + SNQ+       F +L++++ + L DN W
Sbjct: 456 DLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 112 ISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
           I     + L  LE L L               L +   L+L +N            ++ L
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149

Query: 157 LSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQ 214
             L L +N ++  IP   F+ + SL  LDL     LE  +S      L NL+ L L +  
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCN 207

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274
              ++ +             L  LE+  N      P S   L +L+ L +  +  +  I 
Sbjct: 208 IK-DMPNLT-------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE 258

Query: 275 P-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             +   L  L EL L  N ++    + F  L  +  L L  N W
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 33/236 (13%)

Query: 121 DLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL 166
           +  YL+L  NN               +VL L  N            + +L +L+L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 167 QGDIPDG-FSSLNSLQLLDLSGN--SFLEGQLSRNLGTLCNLQTLKLS-LNQFSGEVSDF 222
              IP G F  L+ L+ L L  N    +       +    +L  L L  L +        
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP---SLMRLDLGELKKLEYISEGA 191

Query: 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLT 281
            +GL       +L  L LG   +  ++P +L  L  L  LE+  N     I P S   L+
Sbjct: 192 FEGLF------NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLS 242

Query: 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
            L++L++ ++Q++     +F  L+++  L L+ N     +       L  L EL L
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 8e-20
 Identities = 66/290 (22%), Positives = 103/290 (35%), Gaps = 46/290 (15%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN- 188
           N F  +  +  G  S +P  +   +N   L+L  N++Q    D F  L+ L++L L  N 
Sbjct: 54  NQFSKVVCTRRGL-SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 189 -SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG 247
              +E      L    +L TL+L  N  +   S   + L      S L  L L  N +  
Sbjct: 111 IRQIEVGAFNGLA---SLNTLELFDNWLTVIPSGAFEYL------SKLRELWLRNNPIES 161

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
               +   + +L  L+L     L  I   +   L  L+ L L    +  K   +   L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVG 219

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 366
           +  LE+S N +   I       L+SL++L +    NS +S       I       L    
Sbjct: 220 LEELEMSGNHFP-EIRPGSFHGLSSLKKLWV---MNSQVSL------IERNAFDGL---- 265

Query: 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGN 416
                           L  L L   ++S +LP         L EL +  N
Sbjct: 266 --------------ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 431 PGSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNN 489
              V  +       +P    SN   L L       N+I      +  +L  L  L +  N
Sbjct: 56  FSKVVCTRRGLSE-VPQGIPSNTRYLNL-----MENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 490 NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLS 548
           ++  +    F+G        L ++  L L +N L+  IP  + +  S +  L L  N + 
Sbjct: 110 SIRQIEVGAFNG--------LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

Query: 549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNL 596
            +IP++    +PSL  L L        I       L  L  L+L   N+
Sbjct: 161 -SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 22/225 (9%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SV 434
            R+   L  L L   SI       F  L  +L+ L++  N L+  IP+           +
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLT-VIPSGAFEYLSKLREL 152

Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDIS-FNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
            L +N  E       + +  L    LD+     +      +   L  L  L +   N+ D
Sbjct: 153 WLRNNPIESIPSYAFNRVPSL--MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIP 552
           M   N +         L+ +  L +S NH   EI P S    S +  L +  +Q+S  I 
Sbjct: 211 M--PNLTP--------LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 553 AWIGESMPSLSILRLRSNHFNGTIPSELCK-LSALHILDLSHNNL 596
               + + SL  L L  N+ + ++P +L   L  L  L L HN  
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 449 SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG 508
           S+  +K+      +S       +PQ +        L +  NN+  +  + F         
Sbjct: 53  SNQFSKVVCTRRGLS------EVPQGI--PSNTRYLNLMENNIQMIQADTFRH------- 97

Query: 509 SLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
            L  +  L L  N +  +I   +    + +++L+L +N L+  IP+   E +  L  L L
Sbjct: 98  -LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154

Query: 568 RSNHFNGTIPSE-LCKLSALHILDLSHNNLLGPIP 601
           R+N    +IPS    ++ +L  LDL     L  I 
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.1 bits (244), Expect = 1e-21
 Identities = 69/420 (16%), Positives = 149/420 (35%), Gaps = 67/420 (15%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFS--SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 211
            + +  D+  +    D+  GF   +LN+ +++    ++ +    +  L +   ++ L L+
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLN 83

Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271
             Q     +             ++ +L +G+N +    P     +  L  L L  N  L 
Sbjct: 84  DLQIEEIDTYAFAYA------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LS 136

Query: 272 SIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
           S+P  +  N   L  L +++N +     ++F   ++++ L+LS N+    +T   L  + 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIP 192

Query: 331 SLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNS 390
           SL   ++     S+L+  I+                                +  L  + 
Sbjct: 193 SLFHANVSYNLLSTLAIPIA--------------------------------VEELDASH 220

Query: 391 ASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSS 450
            SI+       ++L      L +  N+L+      L +     VDLS N  E  +     
Sbjct: 221 NSINVVRGPVNVELT----ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 451 NLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510
            + +  L  L IS N +  ++      +  L  L +S+N+L           +  +    
Sbjct: 276 KMQR--LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL---------HVERNQPQF 323

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             +  L L +N +   +  S      + +L L  N    N    +  ++   ++     +
Sbjct: 324 DRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.4 bits (237), Expect = 1e-20
 Identities = 76/472 (16%), Positives = 157/472 (33%), Gaps = 53/472 (11%)

Query: 113 SPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLS 158
               + L + + +    +                ++L+L++        +       +  
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSLNQFSG 217
           L +  N ++   P  F ++  L +L L  N      L R +      L TL +S N    
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLER 161

Query: 218 EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL 277
              D           +SL  L+L  N+LT    + L  + +L +  + YN        +L
Sbjct: 162 IEDDTFQAT------TSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STL 207

Query: 278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
                +EEL  + N +N        +L    +L+L  N        A L N   L E+ L
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNN---LTDTAWLLNYPGLVEVDL 261

Query: 338 IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL 397
              S + L   +   ++   +L  L I   +L      + +    L  L L+   +   +
Sbjct: 262 ---SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 398 PSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG-PIPLWSSNLTKLY 456
                Q +  L+ L +  N +   +  +       ++ LS N ++   +     N+ +  
Sbjct: 317 ERNQPQFD-RLENLYLDHNSIV-TLKLSTHHTLK-NLTLSHNDWDCNSLRALFRNVARPA 373

Query: 457 LRDLDISFN--SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514
           + D D                 + K  L  ++    L+ +              +  TI 
Sbjct: 374 VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK--VQRAQGRCSATDTIN 431

Query: 515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILR 566
            +   +++++ +    L+       L+   N+L   +     E +    +L+
Sbjct: 432 SVQSLSHYITQQGGVPLQGNE---QLEAEVNELRAEVQQLTNEQIQQEQLLQ 480

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 63/329 (19%), Positives = 121/329 (36%), Gaps = 33/329 (10%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
              I  +L       ++++     +  F      L+  +++   ++     +  A L + 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSF 74

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
             +E L+L       +     F +     ++ L + +  +    P   +N   LT LVL 
Sbjct: 75  RQVELLNLNDLQIEEIDTYA-FAYAH--TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGPIPL 447
              +S +LP         L  L +  N+L  RI +          ++ LSSNR    + L
Sbjct: 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDL 188

Query: 448 WSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI 507
             S +    L   ++S+N +      ++     +  L  S+N+++ +             
Sbjct: 189 --SLIPS--LFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVE------ 233

Query: 508 GSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
                +  L L +N+L+      L N   +  +DL  N+L   I       M  L  L +
Sbjct: 234 -----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 285

Query: 568 RSNHFNGTIPSELCKLSALHILDLSHNNL 596
            +N     +      +  L +LDLSHN+L
Sbjct: 286 SNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 121 DLEYLDLSLNNF--------------KVLDLSNNG--FNSTLPHWLFNITNLLSLDLSSN 164
               L+L  N                  L LS+NG  F        F  T+L  LDLS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
            +   +   F  L  L+ LD   ++  +        +L NL  L +S        +   +
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 225 GLSECINSSSLARLELGYNQLTGNL-PISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTF 282
           GL      SSL  L++  N    N  P     L+NL +L+L     L  + P +  +L+ 
Sbjct: 148 GL------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 200

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
           L+ L ++ N         +  L++++VL+ S N              +SL  L+L
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 51/291 (17%), Positives = 96/291 (32%), Gaps = 39/291 (13%)

Query: 131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           +   +  ++ G  S +P  +   ++   L+L SN LQ      F  L  L  L LS N  
Sbjct: 8   SGTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-- 62

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
                         L           G              ++SL  L+L +N +   + 
Sbjct: 63  -------------GLSFKGCCSQSDFG--------------TTSLKYLDLSFNGVI-TMS 94

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPPS--LGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308
            +   L+ L +L+  +++ L  +       +L  L  L ++       F   F  LS++ 
Sbjct: 95  SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368
           VL+++ N ++          L +L  L L +     LS            L+ L + +  
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQVLNMSHNN 210

Query: 369 LGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLS 419
                    +    L  L  +   I  +          +L  L++  N  +
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 113 SPSLLQLKDLEYLDLSLNNF-------------KVLDLSNNGFNSTLPHWLF-NITNLLS 158
           S S      L+YLDLS N               + LD  ++         +F ++ NL+ 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE 218
           LD+S    +      F+ L+SL++L ++GNSF E  L      L NL  L LS  Q    
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 219 VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL- 277
                + L      SSL  L + +N            L +L+ L+   N  + +      
Sbjct: 191 SPTAFNSL------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 243

Query: 278 -GNLTFLEELYLTSNQ 292
               + L  L LT N 
Sbjct: 244 QHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV---DLS 437
           +  T L L S  +       F +L   L +L +  N LS +   +       S+   DLS
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTN 496
            N     +      L +L    LD   +++      SV  +L+ L+ L IS+ +     N
Sbjct: 87  FNGVIT-MSSNFLGLEQL--EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWI 555
             F+G        L ++  L ++ N       P        +  LDL + QL   +    
Sbjct: 144 GIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 556 GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             S+ SL +L +  N+F          L++L +LD S N++
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 55/272 (20%), Positives = 92/272 (33%), Gaps = 44/272 (16%)

Query: 258 NLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKF--PESFGQLSAIRVLELSD 314
           +   LEL  N  L S+P      LT L +L L+SN ++ K    +S    ++++ L+LS 
Sbjct: 29  SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 315 NQWEGFITD--AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK 372
           N     +    ++   L  LE L    ++   +S    F  +    L YL I +      
Sbjct: 88  NG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRVA 141

Query: 373 FPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPG 432
           F       + L  L +   S  +            L  LD+    L              
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------------- 188

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
              LS   F        ++L+ L  + L++S N+           L  L  L  S N++ 
Sbjct: 189 --QLSPTAF--------NSLSSL--QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS 524
                              ++ FL L+ N  +
Sbjct: 237 TSKKQELQ-------HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 62/294 (21%), Positives = 103/294 (35%), Gaps = 67/294 (22%)

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 366
              LEL  N+ +  +       LT L +LSL  +SN      +SF               
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSL--SSN-----GLSFKGCCSQSDFGT---- 77

Query: 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
                         T L  L L+   +  T+ S FL L   L+ LD   ++L  ++    
Sbjct: 78  --------------TSLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLK-QMSEFS 120

Query: 427 VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLV 485
           VF                      +L  L    LDIS           +   L  L  L 
Sbjct: 121 VFL---------------------SLRNL--IYLDISHTHTR-VAFNGIFNGLSSLEVLK 156

Query: 486 ISNNN-LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLG 543
           ++ N+   +   + F+         L  + FL LS   L  ++ P +  + S +  L++ 
Sbjct: 157 MAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 544 ENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL-SALHILDLSHNNL 596
            N    ++  +  + + SL +L    NH   +   EL    S+L  L+L+ N+ 
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
              L++  N +          L QL  L +S+N LS      F G   +S     ++++L
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS------FKGCCSQSDFGTTSLKYL 83

Query: 517 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI 576
            LS N +   +  +      ++ LD   + L       +  S+ +L  L +   H     
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 577 PSELCKLSALHILDLSHNNLLGPIP 601
                 LS+L +L ++ N+      
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFL 167

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 5e-21
 Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 29/224 (12%)

Query: 112 ISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
           I  +  + L+ LE L LS              L N   L+L +N   +        ++ L
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138

Query: 157 LSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQ 214
             L L +N ++  IP   F+ + SL+ LDL     L   +S      L NL+ L L++  
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCN 196

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274
              E+ +             L  L+L  N L+   P S   L +L+ L +  +  +  I 
Sbjct: 197 LR-EIPNLT-------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIE 247

Query: 275 P-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             +  NL  L E+ L  N +     + F  L  +  + L  N W
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 58/290 (20%), Positives = 94/290 (32%), Gaps = 46/290 (15%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN- 188
           N F  +          +P  +   TN   L+L  N +Q    + F  L  L++L LS N 
Sbjct: 43  NQFSKVICVRKNL-REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 189 -SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG 247
              +E      L    NL TL+L  N+ +   +     L      S L  L L  N +  
Sbjct: 100 IRTIEIGAFNGLA---NLNTLELFDNRLTTIPNGAFVYL------SKLKELWLRNNPIES 150

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
               +   + +LR L+L     L  I   +   L+ L  L L    +      +   L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIK 208

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 366
           +  L+LS N     I     + L  L++L +     S +        I       L    
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWM---IQSQIQ------VIERNAFDNL---- 254

Query: 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGN 416
                           L  + L   +++  LP         L+ + +  N
Sbjct: 255 --------------QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 65/324 (20%), Positives = 112/324 (34%), Gaps = 72/324 (22%)

Query: 227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEE 285
           S C  S+  +++      L   +P  +    N R L L  N  +  I   S  +L  LE 
Sbjct: 37  SVCSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEI 92

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
           L L+ N +      +F  L+ +  LEL DN+    I +     L+ L+EL L    N+ +
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL---RNNPI 148

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
                   IP +    +                    L  L L        +     +  
Sbjct: 149 ES------IPSYAFNRI------------------PSLRRLDLGELKRLSYISEGAFE-G 183

Query: 406 LT-LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF 464
           L+ L  L++   +L   IPN                         + L KL   +LD+S 
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN----------------L--------TPLIKL--DELDLSG 216

Query: 465 NSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS 524
           N ++   P S   L  L  L +  + +  +  N F          L ++  + L++N+L+
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN--------LQSLVEINLAHNNLT 268

Query: 525 GEIPPS-LKNCSLMDSLDLGENQL 547
             +P         ++ + L  N  
Sbjct: 269 -LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 431 PGSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNN 489
              V          +P   S+N   L L       N I      S  +L+ L  L +S N
Sbjct: 45  FSKVICVRKNLRE-VPDGISTNTRLLNL-----HENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 490 NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLS 548
           ++  +    F+G        L  +  L L +N L+  IP  +    S +  L L  N + 
Sbjct: 99  HIRTIEIGAFNG--------LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

Query: 549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNL 596
            +IP++    +PSL  L L        I       LS L  L+L+  NL
Sbjct: 150 -SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 51/215 (23%), Positives = 74/215 (34%), Gaps = 28/215 (13%)

Query: 121 DLEYLDLSLNNF--------------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL 166
             + + L  N                 +L L +N            +  L  LDLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 167 QGDIPDG-FSSLNSLQLLDLSGN--SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
              +    F  L  L  L L       L   L R L     LQ L L  N       D  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA---ALQYLYLQDNALQALPDDTF 149

Query: 224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTF 282
             L       +L  L L  N+++     +   L +L  L L  N  +  + P +  +L  
Sbjct: 150 RDL------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGR 202

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           L  LYL +N ++    E+   L A++ L L+DN W
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 56/206 (27%), Positives = 77/206 (37%), Gaps = 9/206 (4%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
           + + L  N  +           NL  L L SN L       F+ L  L+ LDLS N+ L 
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS 252
                    L  L TL L              GL      ++L  L L  N L      +
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL------AALQYLYLQDNALQALPDDT 148

Query: 253 LGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 311
              L NL +L L  N  + S+P  +   L  L+ L L  N++    P +F  L  +  L 
Sbjct: 149 FRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 312 LSDNQWEGFITDAHLRNLTSLEELSL 337
           L  N      T+A L  L +L+ L L
Sbjct: 208 LFANNLSALPTEA-LAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 20/215 (9%)

Query: 128 SLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSG 187
                        G  + +P  +        + L  N +       F +  +L +L L  
Sbjct: 9   YNEPKVTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 188 N--SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI-DGLSECINSSSLARLELGYNQ 244
           N  + ++      L     L+ L LS N     V      GL        L  L L    
Sbjct: 66  NVLARIDAAAFTGLA---LLEQLDLSDNAQLRSVDPATFHGL------GRLHTLHLDRCG 116

Query: 245 LTGNLPI-SLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFG 302
           L   L       L  L+YL L  N+ L ++P  +  +L  L  L+L  N+++     +F 
Sbjct: 117 LQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
            L ++  L L  N+    +     R+L  L  L L
Sbjct: 175 GLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
            + + +  N I+     S    + L  L + +N L+ +    F+G        L  +  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQL 85

Query: 517 VLSNNHLSGEIPPS-LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575
            LS+N     + P+       + +L L    L   +   +   + +L  L L+ N     
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 576 IPSE-LCKLSALHILDLSHNNL 596
           +P +    L  L  L L  N +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 24/225 (10%)

Query: 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG 415
           P   + + +   ++        R    LT L L+S  ++    + F  L   L++LD+  
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSD 89

Query: 416 NHLSGRIPNTLVFRFPG-----SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS 470
           N     +       F G     ++ L     +   P     L  L  + L +  N++  +
Sbjct: 90  NAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAAL--QYLYLQDNALQ-A 143

Query: 471 IPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
           +P     +L  L  L +  N +S +    F G        L ++  L+L  N ++  + P
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--------LHSLDRLLLHQNRVA-HVHP 194

Query: 530 -SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573
            + ++   + +L L  N LS  +P      + +L  LRL  N + 
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 112 ISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
           + P L + L  L+YL L               L N   L L  N  +S        + +L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN--SFLEGQLSRNLGTLCNLQTLKLSLNQ 214
             L L  N +    P  F  L  L  L L  N  S L  +    L     LQ L+L+ N 
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR---ALQYLRLNDNP 236

Query: 215 F 215
           +
Sbjct: 237 W 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 2e-19
 Identities = 62/293 (21%), Positives = 108/293 (36%), Gaps = 36/293 (12%)

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLK 209
                +  +L    +   +    + LNS+  +  + +      +     +  L N+  L 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLF 71

Query: 210 LSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
           L+ N+ +      I  L+   N   L  L L  N++  +L  SL  LK L+ L L +N  
Sbjct: 72  LNGNKLTD-----IKPLTNLKN---LGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNG- 120

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRN 328
           +  I   L +L  LE LYL +N++         +L+ +  L L DNQ    I+D   L  
Sbjct: 121 ISDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ----ISDIVPLAG 173

Query: 329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388
           LT L+ L L K   S L             L  L +   +   K      N     T+  
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLK-----NLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 389 NSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRF 441
              S+        +  +   ++ +V  +        + +F  P ++  +  RF
Sbjct: 229 TDGSLV---TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.9 bits (212), Expect = 9e-18
 Identities = 56/269 (20%), Positives = 95/269 (35%), Gaps = 39/269 (14%)

Query: 114 PSLLQLKDLEYLDLS------------LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161
            +  +L  ++ +  +            L N   L L+ N      P  L N+ NL  L L
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94

Query: 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEV 219
             N ++ D+      L  L+ L L  N      +S    L  L  L++L L  N+    +
Sbjct: 95  DENKIK-DL-SSLKDLKKLKSLSLEHN-----GISDINGLVHLPQLESLYLGNNK----I 143

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGN 279
           +D I  LS       L  L L  NQ++ ++   L  L  L+ L L  N  +  +   L  
Sbjct: 144 TD-ITVLSRLTK---LDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH-ISDLRA-LAG 195

Query: 280 LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339
           L  L+ L L S +   K       L     ++ +D         +   +         +K
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN----VK 251

Query: 340 TSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368
                 +  +SF +  P  +     R++ 
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 56/297 (18%), Positives = 89/297 (29%), Gaps = 78/297 (26%)

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK 257
                       L            +         +S+ ++    + +  ++   + YL 
Sbjct: 16  PDDAFAETIKDNLKKKS--------VTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLP 65

Query: 258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           N+  L L  N  L  I P L NL  L  L+L  N++      S   L  ++ L L  N  
Sbjct: 66  NVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNG- 120

Query: 318 EGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
              I+D   L +L  LE L L     + ++                              
Sbjct: 121 ---ISDINGLVHLPQLESLYLGNNKITDITV----------------------------- 148

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
           L   T+L TL L    ISD +P   L     L  L +  NH+S               DL
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS---------------DL 190

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
            +           + L  L    L++              NL    T+  ++ +L  
Sbjct: 191 RAL----------AGLKNL--DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 58/321 (18%), Positives = 108/321 (33%), Gaps = 81/321 (25%)

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN 342
           + E    S  +   FP+     +      L        +T      L S++++    +  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI 55

Query: 343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL 402
            S+                               ++    +T L LN   ++D  P   L
Sbjct: 56  KSVQG-----------------------------IQYLPNVTKLFLNGNKLTDIKP---L 83

Query: 403 QLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDI 462
                L  L +  N +                DLS         L   +L KL  + L +
Sbjct: 84  TNLKNLGWLFLDENKIK---------------DLS--------SL--KDLKKL--KSLSL 116

Query: 463 SFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH 522
             N I+  I   + +L QL +L + NN ++D+T           +  L  +  L L +N 
Sbjct: 117 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV----------LSRLTKLDTLSLEDNQ 164

Query: 523 LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCK 582
           +S +I P L   + + +L L +N +S ++ A     + +L +L L S        +    
Sbjct: 165 IS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 583 LSALHILDLSHNNLLGPIPYC 603
           L   + +  +  +L+ P    
Sbjct: 220 LVVPNTVKNTDGSLVTPEIIS 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 32/239 (13%)

Query: 119 LKDLEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQ 167
           L+ L+ L +S N+              L + +N            + N+  +++  N L+
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 168 GD-IPDGFSSLNSLQLLDLSGNSFLEGQLSR-NLGTLCNLQTLKLSLNQFSGEVSDFIDG 225
                 G      L  L +S       +L+         L  L L  N+      + +  
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEA-----KLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
                  S L RL LG+NQ+      SL +L  LR L L  N  L  +P  L +L  L+ 
Sbjct: 216 Y------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQV 268

Query: 286 LYLTSNQMNGKFPESF------GQLSAIRVLELSDNQWEGF-ITDAHLRNLTSLEELSL 337
           +YL +N +       F       + +    + L +N    + +  A  R +T    +  
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 65/291 (22%), Positives = 100/291 (34%), Gaps = 47/291 (16%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
            +LDL NN  +         + +L +L L +N +       FS L  LQ L +S N    
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN---- 112

Query: 193 GQLSR-NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI 251
             L         +L  L++  N+          GL       ++  +E+G N L  N   
Sbjct: 113 -HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGL------RNMNCIEMGGNPLE-NSGF 164

Query: 252 SLGYLK--NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
             G      L YL +     L  IP  L     L EL+L  N++     E   + S +  
Sbjct: 165 EPGAFDGLKLNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369
           L L  NQ    I +  L  L +L EL L    N+ LS                       
Sbjct: 222 LGLGHNQIR-MIENGSLSFLPTLRELHL---DNNKLS----------------------- 254

Query: 370 GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG 420
             + P  L +   L  + L++ +I+    + F  +   +      G  L  
Sbjct: 255 --RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 55/371 (14%), Positives = 111/371 (29%), Gaps = 84/371 (22%)

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQ 292
            L  ++     L   +P  +    +   L+L  N  +  +       L  L  L L +N+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK 89

Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFD 352
           ++    ++F  L  ++ L +S N     + +      +SL EL +       +       
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIRKVP------ 139

Query: 353 WIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELD 412
                                         +  + +    + ++         L L+ L 
Sbjct: 140 ---------------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 413 VGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP 472
           +    L+  IP  L                         L +L+L    I       +I 
Sbjct: 179 ISEAKLT-GIPKDLP----------------------ETLNELHLDHNKIQ------AIE 209

Query: 473 QSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL 531
                   +L  L + +N +  + N + S         L T+R L L NN LS  +P  L
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKLS-RVPAGL 260

Query: 532 KNCSLMDSLDLGENQLSGNIPA------WIGESMPSLSILRLRSNHFNGTI--PSELCKL 583
            +  L+  + L  N ++  +          G      + + L +N        P+    +
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 584 SALHILDLSHN 594
           +    +   + 
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 66/385 (17%), Positives = 130/385 (33%), Gaps = 57/385 (14%)

Query: 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224
           D +    +  S +  L  L  + ++             C+L+ ++ S       V   I 
Sbjct: 1   DEEASGAETTSGIPDLDSLPPTYSAMCPFGCH------CHLRVVQCSDLGLK-AVPKEI- 52

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFL 283
                  S     L+L  N ++         L++L  L L  N  +  I   +   L  L
Sbjct: 53  -------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKL 104

Query: 284 EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS 343
           ++LY++ N +  + P      S++  L + DN+    +       L ++  + +    N 
Sbjct: 105 QKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEM--GGNP 158

Query: 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ 403
             +           KL YL I   +L             L  L L+   I        L+
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLR 215

Query: 404 LNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
            +  L  L +G N +                 + +           S L  L  R+L + 
Sbjct: 216 YS-KLYRLGLGHNQIR---------------MIENGSL--------SFLPTL--RELHLD 249

Query: 464 FNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHL 523
            N ++  +P  + +LK L  + +  NN++ +  N+F         +      + L NN +
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY--NGISLFNNPV 306

Query: 524 S-GEIPPSL-KNCSLMDSLDLGENQ 546
              E+ P+  +  +   ++  G  +
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 17/170 (10%)

Query: 112 ISPSLLQLKDLEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLD 160
             P       L YL +S                 L L +N   +     L   + L  L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 161 LSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEV 219
           L  N ++  I +G  S L +L+ L L  N      +   L  L  LQ + L  N  +   
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNL--PISLGYLKNLRYLELWYN 267
            +    +   +  +    + L  N +      P +   + +   ++    
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
            +    L  LVL +  IS      F  L   L +L +  NHL   IP  L       + +
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLV-EIPPNL-PSSLVELRI 130

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSI-NGSIPQSVGNLKQLLTLVISNNNLSDMT 495
             NR         S L  +    +++  N + N        +  +L  L IS   L+ + 
Sbjct: 131 HDNRIRKVPKGVFSGLRNM--NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188

Query: 496 NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAW 554
            +              T+  L L +N +   I    L   S +  L LG NQ+   I   
Sbjct: 189 KDLPE-----------TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENG 235

Query: 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
               +P+L  L L +N  +  +P+ L  L  L ++ L  NN+
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 502 EIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMP 560
            +P+ I        L L NN +S E+     K    + +L L  N++S  I       + 
Sbjct: 47  AVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102

Query: 561 SLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            L  L +  NH    IP  L   S+L  L +  N +
Sbjct: 103 KLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRI 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 73/439 (16%), Positives = 136/439 (30%), Gaps = 69/439 (15%)

Query: 117 LQLKDLEYLDLS-LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
            +++  + +    L     LD  N+         +  +T L  L  +SN++   +    S
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT-TLD--LS 82

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
              +L  L    N       + ++  L  L  L    N+ +           +   +  L
Sbjct: 83  QNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTK---------LDVSQNPLL 129

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
             L    N LT    I + +   L  L+   N  +  +   +   T L  L  + N++  
Sbjct: 130 TYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355
                  Q   +  L    N     IT   L     L  L     S++ L+     D  P
Sbjct: 185 ---LDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDC---SSNKLT---EIDVTP 231

Query: 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG 415
             +L Y       L  +        ++LTTL      + +   +   QL          G
Sbjct: 232 LTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLI----YFQAEG 284

Query: 416 NHLSGRIP---NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP 472
                 +    NT ++     +D  +      + L  S   K  L  L ++   +   + 
Sbjct: 285 CRKIKELDVTHNTQLY----LLDCQAAGIT-ELDL--SQNPK--LVYLYLNNTELT-ELD 334

Query: 473 QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLK 532
             V +  +L +L   N ++ D +          S+G +  +     +          +L 
Sbjct: 335 --VSHNTKLKSLSCVNAHIQDFS----------SVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 533 NCSLMDSLDLGENQLSGNI 551
           N SL  ++        GN 
Sbjct: 383 NNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 76/448 (16%), Positives = 143/448 (31%), Gaps = 70/448 (15%)

Query: 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ 214
           N  S   ++ ++Q         L +L  LD   +S  +      +  L  L  L  + N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNN 75

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274
            +      +D LS+  N   L  L    N+LT    + +  L  L YL    N  L  + 
Sbjct: 76  ITT-----LD-LSQNTN---LTYLACDSNKLTN---LDVTPLTKLTYLNCDTNK-LTKLD 122

Query: 275 PSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEE 334
            S      L  L    N +           + +  L+   N+    IT   +   T L  
Sbjct: 123 VS--QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNK---KITKLDVTPQTQLTT 174

Query: 335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS 394
           L       + L  +          L  L      +  K    L    +LT L  +S  ++
Sbjct: 175 LDCSFNKITELDVS------QNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLT 225

Query: 395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTK 454
             +    +     L   D   N L+  +  + + +   ++          I L  ++ T+
Sbjct: 226 -EID---VTPLTQLTYFDCSVNPLT-ELDVSTLSKLT-TLHCIQTDLLE-IDL--THNTQ 276

Query: 455 LYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514
           L    +              V +  QL  L      ++++            +     + 
Sbjct: 277 L----IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-----------DLSQNPKLV 321

Query: 515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574
           +L L+N  L+ E+   + + + + SL      +  +  +     +P+L+           
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSV--GKIPALNNNFEAEGQTI- 374

Query: 575 TIPSELCKLSALHI------LDLSHNNL 596
           T+P E    ++L I      LD   N +
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 43/235 (18%)

Query: 113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPD 172
              +     L  LD S N    LD+S N               L  L+  +N++   +  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQN-------------KLLNRLNCDTNNIT-KLD- 207

Query: 173 GFSSLNSLQLLDLSGNSFLEGQLSR-NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
             +    L  LD S N     +L+  ++  L  L     S+N         +  L     
Sbjct: 208 -LNQNIQLTFLDCSSN-----KLTEIDVTPLTQLTYFDCSVNP--------LTELDVSTL 253

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
            S L  L      L     I L +   L Y +      +  +   + + T L  L   + 
Sbjct: 254 -SKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA 307

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
            +         Q   +  L L++ +    +T+  + + T L+ LS +       S
Sbjct: 308 GIT---ELDLSQNPKLVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHIQDFS 355

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 60/376 (15%), Positives = 110/376 (29%), Gaps = 94/376 (25%)

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
            ++     + A       ++     IS   L  L  L+   +S +  +   +  LT L +
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTG-IEKLTGLTK 68

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
           L  TSN +         Q + +  L    N+    +T+  +  LT L  L+      + L
Sbjct: 69  LICTSNNITTL---DLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
             +                                  LT L     ++++   S   QL 
Sbjct: 122 DVS------------------------------QNPLLTYLNCARNTLTEIDVSHNTQLT 151

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
                                       +D   N+    + +  +  T+L    LD SFN
Sbjct: 152 ---------------------------ELDCHLNKKITKLDV--TPQTQL--TTLDCSFN 180

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
            I       V   K L  L    NN++ +            +   + + FL  S+N L+ 
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNKLT- 225

Query: 526 EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSA 585
           EI   +   + +   D   N L+  +      ++  L+ L          I   L   + 
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL-EID--LTHNTQ 276

Query: 586 LHILDLSHNNLLGPIP 601
           L          +  + 
Sbjct: 277 LIYFQAEGCRKIKELD 292

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF--LEGQLSRNLGTLCNLQTLK 209
                L+  L  +    +I    + +NSL  + L+  +   L G     +    N++ L 
Sbjct: 21  TFKAYLNGLLGQSSTA-NIT--EAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLT 72

Query: 210 LSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
           ++    +       + +S   N   L RL +    +T +   +L  L +L  L++ +++ 
Sbjct: 73  INNIHATN-----YNPISGLSN---LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRN 328
             SI   +  L  +  + L+ N            L  ++ L +  +     + D   + +
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDG----VHDYRGIED 179

Query: 329 LTSLEELSL 337
              L +L  
Sbjct: 180 FPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 32/189 (16%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 107 ELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL 166
             +  ++  L Q       +  +N+   + L+N          +    N+  L +++   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA 78

Query: 167 QGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL 226
             +  +  S L++L+ L + G      ++  NL  L +L  L +S +     +   I+ L
Sbjct: 79  T-NY-NPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEEL 286
                   +  ++L YN    ++   L  L  L+ L + ++  +      + +   L +L
Sbjct: 136 ------PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG-IEDFPKLNQL 186

Query: 287 YLTSNQMNG 295
           Y  S  + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 18/165 (10%), Positives = 58/165 (35%), Gaps = 22/165 (13%)

Query: 446 PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMT---------- 495
            +  + +  L    + ++  ++   +   +     +  L I+N + ++            
Sbjct: 37  NITEAQMNSL--TYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLER 92

Query: 496 ----NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI 551
                 + + +   ++  L ++  L +S++     I   +     ++S+DL  N    +I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 552 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
                +++P L  L ++ +  +      +     L+ L      +
Sbjct: 153 MPL--KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 22/141 (15%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
            +         + +   +   +  L  + ++N N++D+T           I     I+ L
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG----------IEYAHNIKDL 71

Query: 517 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI 576
            ++N H +    P +   S ++ L +    ++ +    +   + SL++L +  +  + +I
Sbjct: 72  TINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSI 128

Query: 577 PSELCKLSALHILDLSHNNLL 597
            +++  L  ++ +DLS+N  +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 111 KISPSLLQLKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLFNITNL 156
             +P +  L +LE L +               L +  +LD+S++  + ++   +  +  +
Sbjct: 80  NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS--RNLGTLCNLQTLKLSLNQ 214
            S+DLS N    DI     +L  L+ L++  +      +   R +     L  L      
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFD-----GVHDYRGIEDFPKLNQLYAFSQT 192

Query: 215 FSGE 218
             G+
Sbjct: 193 IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 39/212 (18%)

Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSLIKTS 341
            +         +     +  Q++++  + L++      +TD   +    ++++L++    
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLTINNIH 77

Query: 342 NSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWF 401
            ++ +            L  L I    +       L   T LT L ++ ++  D++ +  
Sbjct: 78  ATNYNPISGLS-----NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 402 LQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLD 461
             L   ++ +D+  N     I                             L +  L+ L+
Sbjct: 133 NTLP-KVNSIDLSYNGAITDIMPL------------------------KTLPE--LKSLN 165

Query: 462 ISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
           I F+ ++      + +  +L  L   +  +  
Sbjct: 166 IQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 20/195 (10%)

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLT 289
           I  S+      G    +    I+   + +L Y+ L   + +  +   +     +++L + 
Sbjct: 17  IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTIN 74

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI 349
           +             LS +  L +             L  LTSL  L +  +         
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-------AH 124

Query: 350 SFDWIPPF----KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
               +       K+  + + Y          L+   EL +L +    + D      ++  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG---IEDF 180

Query: 406 LTLDELDVGGNHLSG 420
             L++L      + G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 41/170 (24%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNR 440
             +  L +N+   ++  P   +     L+ L + G  ++      L              
Sbjct: 66  HNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNL-------------- 108

Query: 441 FEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNN-LSDMTNNNF 499
                    S LT L    LDIS ++ + SI   +  L ++ ++ +S N  ++D      
Sbjct: 109 ---------SGLTSL--TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD------ 151

Query: 500 SGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549
                  + +L  ++ L +  + +       +++   ++ L      + G
Sbjct: 152 ----IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 133 KVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
           K LDL +N   S+LP   F  +T L  L L+ N LQ  +P G F  L +L+ L ++ N  
Sbjct: 40  KKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 191 LEGQLSRNLGT-LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
               L   +   L NL  L+L  NQ         D L+       L  L LGYN+L  +L
Sbjct: 98  QA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQ-SL 148

Query: 250 PISL-GYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAI 307
           P  +   L +L+ L L+ N  L  +P      LT L+ L L +NQ+      +F  L  +
Sbjct: 149 PKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 308 RVLELSDNQW 317
           ++L+L +N W
Sbjct: 208 KMLQLQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSL 212
            +   LDL SN L       F  L  L+LL L+ N      L   +   L NL+TL ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTD 94

Query: 213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLG 271
           N+         D L       +LA L L  NQL  +LP  +   L  L YL L YN  L 
Sbjct: 95  NKLQALPIGVFDQL------VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQ 146

Query: 272 SIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330
           S+P  +   LT L+EL L +NQ+      +F +L+ ++ L+L +NQ +     A   +L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-FDSLE 205

Query: 331 SLEELSL 337
            L+ L L
Sbjct: 206 KLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 21/167 (12%)

Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSD 493
           DL SN+           LTKL  R L ++ N +  ++P  +   LK L TL +++N L  
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKL--RLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP----SLKNCSLMDSLDLGENQLSG 549
           +    F          L+ +  L L  N L   +PP    SL     +  L LG N+L  
Sbjct: 100 LPIGVFDQ--------LVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ- 146

Query: 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           ++P  + + + SL  LRL +N           KL+ L  L L +N L
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 35/202 (17%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP--GSVDLSS 438
            +   L L S  +S      F +L   L  L +  N L   +P  +        ++ ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTD 94

Query: 439 NR--------FEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNN 489
           N+        F+        NL +L L       N +  S+P  V  +L +L  L +  N
Sbjct: 95  NKLQALPIGVFDQL-----VNLAELRLDR-----NQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 490 NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-KNCSLMDSLDLGENQLS 548
            L  +    F          L +++ L L NN L   +P       + + +L L  NQL 
Sbjct: 144 ELQSLPKGVFDK--------LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

Query: 549 GNIPAWIGESMPSLSILRLRSN 570
             +P    +S+  L +L+L+ N
Sbjct: 195 -RVPEGAFDSLEKLKMLQLQEN 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 128 SLNNFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDL 185
           S    +VLDLS      T+    + ++++L +L L+ N +Q  +  G FS L+SLQ L  
Sbjct: 50  SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQF-SGEVSDFIDGLSECINSSSLARLELGYNQ 244
              + L    +  +G L  L+ L ++ N   S ++ ++   L+      +L  L+L  N+
Sbjct: 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDLSSNK 160

Query: 245 LTGNLPISLGYLKNLRY----LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPES 300
           +       L  L  +      L+L  N  +  I P       L+EL L +NQ+       
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 301 FGQLSAIRVLELSDNQW 317
           F +L++++ + L  N W
Sbjct: 220 FDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 20/192 (10%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN--SFLEGQLSRNLGTLCNLQTLKLS 211
            +  +LDLS N L+      F S   LQ+LDLS      +E    ++L    +L TL L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS---HLSTLILT 84

Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271
            N           GL      SSL +L      L       +G+LK L+ L + +N  + 
Sbjct: 85  GNPIQSLALGAFSGL------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQ 137

Query: 272 SIPPS--LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV----LELSDNQWEGFITDAH 325
           S        NLT LE L L+SN++   +      L  + +    L+LS N          
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPG 195

Query: 326 LRNLTSLEELSL 337
                 L+EL+L
Sbjct: 196 AFKEIRLKELAL 207

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 457 LRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF 515
            ++LD+SFN +   +      +  +L  L +S   +  + +  +          L  +  
Sbjct: 30  TKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLST 80

Query: 516 LVLSNNHLSGEIPPSL-KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574
           L+L+ N +   +        S +  L   E  L+ ++  +    + +L  L +  N    
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 575 TIPSE--LCKLSALHILDLSHNNL 596
           +         L+ L  LDLS N +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG 415
           PF  + L + +  L         +  EL  L L+   I       +  L+  L  L + G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTG 85

Query: 416 NHLSGRIPNTLVFRFPGS---VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP 472
           N +   +     F    S   +                +L  L  ++L+++ N I     
Sbjct: 86  NPIQ-SLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTL--KELNVAHNLIQSFKL 141

Query: 473 QSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF-LVLSNNHLSGEIPPS 530
                NL  L  L +S+N +  +   +        +  +  +   L LS N ++  I P 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-----LHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 531 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
                 +  L L  NQL  ++P  I + + SL  + L +N
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 43/222 (19%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNR 440
                L L+   +       F      L  LD+    +                 +    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ---------------TIEDGA 71

Query: 441 FEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNF 499
           ++       S+L+ L L       N I  S+       L  L  LV    NL+ + N   
Sbjct: 72  YQS-----LSHLSTLILTG-----NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 500 SGEIPESIGSLLTIRFLVLSNNHL-SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGES 558
                     L T++ L +++N + S ++P    N + ++ LDL  N++  +I       
Sbjct: 121 GH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171

Query: 559 MPSLSI----LRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           +  + +    L L  N  N  I     K   L  L L  N L
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 21/90 (23%)

Query: 118 QLKDLEYLDLSLNNFKV------------------LDLSNNGFNSTLPHWLFNITNLLSL 159
            L +LE+LDLS N  +                   LDLS N  N  +    F    L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKEL 205

Query: 160 DLSSNDLQGDIPDG-FSSLNSLQLLDLSGN 188
            L +N L+  +PDG F  L SLQ + L  N
Sbjct: 206 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 46/184 (25%), Positives = 68/184 (36%), Gaps = 17/184 (9%)

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
           ++       + LP  L    +   L LS N L             L  L+L      + Q
Sbjct: 15  VNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL- 253
           +   L     L TL LS NQ    +      L        L  L++ +N+LT +LP+   
Sbjct: 72  VDGTLP---VLGTLDLSHNQLQ-SLPLLGQTLPA------LTVLDVSFNRLT-SLPLGAL 120

Query: 254 GYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
             L  L+ L L  N  L ++PP L      LE+L L +N +          L  +  L L
Sbjct: 121 RGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 313 SDNQ 316
            +N 
Sbjct: 180 QENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 9e-16
 Identities = 52/187 (27%), Positives = 68/187 (36%), Gaps = 15/187 (8%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE 192
            +L LS N   +     L   T L  L+L   +L         +L  L  LDLS N    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQL-- 89

Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS 252
             L     TL  L  L +S N+ +      + GL E      L  L L  N+L   LP  
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELK-TLPPG 142

Query: 253 L-GYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
           L      L  L L  N+ L  +P  L   L  L+ L L  N +    P+ F     +   
Sbjct: 143 LLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 311 ELSDNQW 317
            L  N W
Sbjct: 201 FLHGNPW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
            S + S   ++    +     L  +L    +   L LS N         +   +      
Sbjct: 6   VSKVASHLEVNCDKRNL--TALPPDLPK--DTTILHLSENLLYTFSLATLMPYT------ 55

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
            L +L L   +LT  L +    L  L  L+L +N  L S+P     L  L  L ++ N++
Sbjct: 56  RLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL 112

Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
                 +   L  ++ L L  N+ +       L     LE+LSL
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSL 155

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 433 SVDLSSNRFE---GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNN 489
            V+            +P    + T L+L +     N +      ++    +L  L +   
Sbjct: 14  EVNCDKRNLTALPPDLP---KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 490 NLS--------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-KNC 534
            L+              D+++N     +P    +L  +  L +S N L+  +P    +  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL 123

Query: 535 SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-KLSALHILDLSH 593
             +  L L  N+L   +P  +    P L  L L +N+    +P+ L   L  L  L L  
Sbjct: 124 GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 594 NNL 596
           N+L
Sbjct: 182 NSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 51/247 (20%)

Query: 327 RNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTL 386
             + S  E++  K + ++L  ++      P     L +    L       L   T LT L
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL------PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 387 VLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIP 446
            L+ A ++  L      L   L  LD+  N L                          +P
Sbjct: 61  NLDRAELT-KLQV-DGTLP-VLGTLDLSHNQLQS------------------------LP 93

Query: 447 LWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505
           L    L    L  LD+SFN +  S+P      L +L  L +  N L           +P 
Sbjct: 94  LLGQTLPA--LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK---------TLPP 141

Query: 506 SIGSLLT-IRFLVLSNNHLSGEIPPSL-KNCSLMDSLDLGENQLSGNIPAWIGESMPSLS 563
            + +    +  L L+NN+L+ E+P  L      +D+L L EN L   IP     S   L 
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS-HLLP 198

Query: 564 ILRLRSN 570
              L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 17/86 (19%)

Query: 118 QLKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLS 162
            L +L+ L L  N                + L L+NN     LP  L   + NL +L L 
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQ 180

Query: 163 SNDLQGDIPDGFSSLNSLQLLDLSGN 188
            N L   IP GF   + L    L GN
Sbjct: 181 ENSLYT-IPKGFFGSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 5e-16
 Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 54/249 (21%)

Query: 114 PSLLQLKDLEYLDLSLNNF-----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLS 162
                +     L L+  N             VL+++ N    +LP       +L  LD  
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNAL-ISLPE---LPASLEYLDAC 108

Query: 163 SNDLQGDIPDGFSSLNSLQL-----------------LDLSGNSFLEGQLSRNLGTLCNL 205
            N L   +P+  +SL  L +                 ++   N     QL+       +L
Sbjct: 109 DNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNN-----QLTMLPELPTSL 162

Query: 206 QTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR----Y 261
           + L +  NQ        +  L E     SL  L++  N L  +LP       +      +
Sbjct: 163 EVLSVRNNQ--------LTFLPELP--ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 262 LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFI 321
                N  +  IP ++ +L     + L  N ++ +  ES  Q +A          +    
Sbjct: 212 FRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 322 TDAHLRNLT 330
              +  +  
Sbjct: 271 GQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 7e-16
 Identities = 49/271 (18%), Positives = 83/271 (30%), Gaps = 54/271 (19%)

Query: 85  IMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQ-LKDLEYLDLSLNNFKVLDLSNNGFN 143
           IML +NN F     S   ++ +                 E   L   N        N   
Sbjct: 3   IMLPINNNF-----SLSQNSFYNTISGTYADYFSAWDKWEKQALPGEN-------RNEAV 50

Query: 144 STLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLC 203
           S L   L        L L+  +L   +PD       + +L+++ N      L        
Sbjct: 51  SLLKECLI--NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN-----ALISLPELPA 100

Query: 204 NLQTLKLSLNQFSGEVSDFIDGLSECINS-----------SSLARLELGYNQLTGNLPIS 252
           +L+ L    N+ S  + +    L                 + L  +    NQLT  LP  
Sbjct: 101 SLEYLDACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPEL 158

Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL----SAIR 308
                +L  L +  N  L  +P    +   LE L +++N +    P    +         
Sbjct: 159 PT---SLEVLSVRNNQ-LTFLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEI 210

Query: 309 VLELSDNQWEGFITD--AHLRNLTSLEELSL 337
                +N+    IT    ++ +L     + L
Sbjct: 211 FFRCRENR----ITHIPENILSLDPTCTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 46/247 (18%)

Query: 368 QLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV 427
                + +      +      N       L    +       EL +   +LS  +P+ L 
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLS-SLPDNL- 78

Query: 428 FRFPGSVDLSSNRFEGPIPLWSSNLTKLY---------------LRDLDISFNSINGSIP 472
                 ++++ N     +P   ++L  L                L+ LD+  N +   +P
Sbjct: 79  PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLT-MLP 136

Query: 473 QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLK 532
           +    L+    +   NN L+          +PE   SL     L + NN L+  +P   +
Sbjct: 137 ELPALLE---YINADNNQLT---------MLPELPTSL---EVLSVRNNQLT-FLPELPE 180

Query: 533 NCSLMDSLDLGENQLSGNIPAWIGE---SMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589
           +   +++LD+  N L  ++PA       S  +    R R N     IP  +  L     +
Sbjct: 181 S---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 590 DLSHNNL 596
            L  N L
Sbjct: 236 ILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 9e-14
 Identities = 62/344 (18%), Positives = 103/344 (29%), Gaps = 41/344 (11%)

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           LS +   N + G   D FS+ +  +   L G +  E         +     L+L+     
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-- 70

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276
                 +  L + +    +  LE+  N L  +LP       +L YL+   N  L ++P  
Sbjct: 71  ------LSSLPDNL-PPQITVLEITQNALI-SLPELPA---SLEYLDACDNR-LSTLPEL 118

Query: 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336
             +L     L + +NQ+    PE    L     +   +NQ             TSLE LS
Sbjct: 119 PASLK---HLDVDNNQLT-MLPELPALL---EYINADNNQLTML-----PELPTSLEVLS 166

Query: 337 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG--PKFPTWLRNQTEL-TTLVLNSASI 393
           +     + L             L  L +    L   P  P    +  E           I
Sbjct: 167 VRNNQLTFLPELPE-------SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLT 453
           +  +P   L L+     + +  N LS R     + +     D    R    +     N  
Sbjct: 220 T-HIPENILSLD-PTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 454 KLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNN 497
             +    D        +    V  +          N  S   + 
Sbjct: 277 --HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 7e-12
 Identities = 62/336 (18%), Positives = 100/336 (29%), Gaps = 68/336 (20%)

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
           SI   + N   L +     N ++G + + F          L        ++      +  
Sbjct: 2   SIMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
             EL L + + SSL  N+      P ++  L I    L    P    +   L  L     
Sbjct: 61  FSELQLNRLNLSSLPDNL------PPQITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSN 451
            +S TLP     L      LDV  N L+           P    L               
Sbjct: 111 RLS-TLPELPASLK----HLDVDNNQLT---------MLPELPAL--------------- 141

Query: 452 LTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLL 511
                L  ++   N +   +P+   +L+    L + NN L+          +PE   SL 
Sbjct: 142 -----LEYINADNNQLT-MLPELPTSLE---VLSVRNNQLT---------FLPELPESL- 182

Query: 512 TIRFLVLSNNHLSGEIPPSLKNC----SLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567
               L +S N L   +P                   EN+++ +IP  I  S+     + L
Sbjct: 183 --EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIIL 237

Query: 568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603
             N  +  I   L + +A                  
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 47/193 (24%), Positives = 66/193 (34%), Gaps = 41/193 (21%)

Query: 133 KVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
            +LDLS+N  +     W    +TNL SL LS N L   I    F  + +L+ LDLS N  
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN-- 98

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
                        +L TL                 L       +L  L L  N +     
Sbjct: 99  -------------HLHTLD----------EFLFSDLQ------ALEVLLLYNNHIVVVDR 129

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPP----SLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
            +   +  L+ L L  N  +   P         L  L  L L+SN++         +L A
Sbjct: 130 NAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 307 I--RVLELSDNQW 317
                L L +N  
Sbjct: 189 WVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 4/160 (2%)

Query: 232 SSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLT 289
            S  A L+L +N L+      +   L NL  L L +N  L  I   +   +  L  L L+
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI 349
           SN ++      F  L A+ VL L +N     +      ++  L++L L +   S     +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 350 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
             D     KL  L +   +L     T L+         L 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 24/146 (16%)

Query: 119 LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSS 163
           L +L  L LS              + N + LDLS+N  ++ L  +LF ++  L  L L +
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYN 121

Query: 164 NDLQGDIPDG-FSSLNSLQLLDLSGN--SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS 220
           N +   +    F  +  LQ L LS N  S    +L ++   L  L  L LS N+      
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 221 DFIDGLSECINSSSLARLELGYNQLT 246
             +  L     +     L L  N L 
Sbjct: 181 TDLQKLP----AWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 17/143 (11%)

Query: 460 LDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL 518
           LD+S N+++    +     L  L +L++S+N+L+ +++  F          +  +R+L L
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNLRYLDL 95

Query: 519 SNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 577
           S+NHL   +      +   ++ L L  N +   +     E M  L  L L  N  +   P
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 578 SE----LCKLSALHILDLSHNNL 596
            E      KL  L +LDLS N L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 20/168 (11%)

Query: 435 DLSSNRFEGPIPLWS-SNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLS 492
           DLS N        W+ + LT L    L +S N +N  I       +  L  L +S+N+L 
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNL--HSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNI 551
            +    FS         L  +  L+L NNH+   +   + ++ + +  L L +NQ+S   
Sbjct: 102 TLDEFLFSD--------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 552 PAWI---GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLS-HNN 595
           P  +   G  +P L +L L SN       ++L KL A     L  HNN
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 43/200 (21%)

Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNR 440
           +    L L+  ++S     W       L  L +  NHL+  I +   F            
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE-AFV----------- 85

Query: 441 FEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNF 499
                      +    LR LD+S N ++ ++ + +  +L+ L  L++ NN++  +  N F
Sbjct: 86  ----------PVPN--LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 500 SGEIPESIGSLLTIRFLVLSNNHLSGEIPP----SLKNCSLMDSLDLGENQLSGNIPAWI 555
                     +  ++ L LS N +S   P            +  LDL  N+L   +P   
Sbjct: 133 ED--------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

Query: 556 GESMPSLS--ILRLRSNHFN 573
            + +P+     L L +N   
Sbjct: 183 LQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNN-FSGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
           ++PQS+ +   LL L  S+NNLS +      +         L  +  L+LS+NHL+  I 
Sbjct: 32  NVPQSLPSYTALLDL--SHNNLSRLRAEWTPTR--------LTNLHSLLLSHNHLN-FIS 80

Query: 529 P-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSAL 586
             +      +  LDL  N L   +  ++   + +L +L L +NH    +       ++ L
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQL 138

Query: 587 HILDLSHNNL 596
             L LS N +
Sbjct: 139 QKLYLSQNQI 148

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 96/508 (18%), Positives = 167/508 (32%), Gaps = 112/508 (22%)

Query: 120 KDLEYLDLSLNNF---------------KVLDLSNNGFNST----LPHWLFNITNLLSLD 160
            D++ LD+                    +V+ L + G        +   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 161 LSSNDLQGD----IPDGFSSLN-SLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSL 212
           L SN+L       +  G  + +  +Q L L          G LS  L TL  LQ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 213 NQFSGE-VSDFIDGLSECINSSSLARLELGYNQLT----GNLPISLGYLKNLRYLELWYN 267
           N      +    +GL +      L +L+L Y  L+      L   L    + + L +  N
Sbjct: 123 NLLGDAGLQLLCEGLLD--PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 268 SF----LGSIPPSLGNLTF-LEELYLTSNQMNGK----FPESFGQLSAIRVLELSDNQWE 318
                 +  +   L +    LE L L S  +               +++R L L  N+  
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-- 238

Query: 319 GFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK----FP 374
             + D  +  L        +   +S               LR L I    +  K      
Sbjct: 239 --LGDVGMAEL-----CPGLLHPSSR--------------LRTLWIWECGITAKGCGDLC 277

Query: 375 TWLRNQTELTTLVLNSASISDT----LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRF 430
             LR +  L  L L    + D     L    L+    L+ L V     +           
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--------- 328

Query: 431 PGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG-----NLKQLLTLV 485
                 SS        + + N     L +L IS N +  +  + +          L  L 
Sbjct: 329 -CCSHFSS--------VLAQNRF---LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLK-NCSLMDSL 540
           +++ ++SD + ++ +     ++ +  ++R L LSNN L       +  S++    L++ L
Sbjct: 377 LADCDVSDSSCSSLA----ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 541 DLGENQLSGNIPAWIGE---SMPSLSIL 565
            L +   S  +   +       PSL ++
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 75/464 (16%), Positives = 146/464 (31%), Gaps = 74/464 (15%)

Query: 179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLAR 237
            +Q LD+      + + +  L  L   Q ++L     +     D    L       +LA 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---PALAE 60

Query: 238 LELGYNQLTGNLPISLGY-LKN----LRYLELWYNSF----LGSIPPSLGNLTFLEELYL 288
           L L  N+L       +   L+     ++ L L          G +  +L  L  L+EL+L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 289 TSNQMNGKFPESFGQL-----SAIRVLELSDNQWEGFITDAH-------LRNLTSLEELS 336
           + N +     +   +        +  L+L        ++ A        LR     +EL+
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS----LSAASCEPLASVLRAKPDFKELT 176

Query: 337 LIKTSNSSLSFNISFDWI--PPFKLRYLVIRYYQLGPK----FPTWLRNQTELTTLVLNS 390
           +     +     +    +   P +L  L +    +           + ++  L  L L S
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 391 ASISDT----LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIP 446
             + D     L    L  +  L  L +    ++ +          G  DL        + 
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK----------GCGDLCR------VL 280

Query: 447 LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPES 506
               +L +L L   ++            +    QL +L + + + +    ++FS      
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS----SV 336

Query: 507 IGSLLTIRFLVLSNNHLSGE----IPPSLK--NCSLMDSLDLGENQLSGNIPAWIGESM- 559
           +     +  L +SNN L       +   L      L   L L +  +S +  + +  ++ 
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL-RVLWLADCDVSDSSCSSLAATLL 395

Query: 560 --PSLSILRLRSNHFNGTIPSELCKL-----SALHILDLSHNNL 596
              SL  L L +N        +L +        L  L L     
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 78/375 (20%), Positives = 121/375 (32%), Gaps = 78/375 (20%)

Query: 112 ISPSLLQLKDLEYLDLSLNNF-------------------KVLDLSNNGFNST----LPH 148
           IS +L     L  L+L  N                     + L L N          L  
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 149 WLFNITNLLSLDLSSNDLQGD----IPDGFSSLNS-LQLLDLSGNSFLE---GQLSRNLG 200
            L  +  L  L LS N L       + +G       L+ L L   S        L+  L 
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 201 TLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLT----GNLPISLGY 255
              + + L +S N  +   V     GL +  +   L  L+L    +T     +L   +  
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 256 LKNLRYLELWYNSFLGS-----IPPSLGNLTFLEELYLTSNQMNGKFPESFGQL----SA 306
             +LR L L  N           P  L   + L  L++    +  K      ++     +
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 307 IRVLELSDNQ--WEG--FITDAHLRNLTSLEELSLIKTS---------NSSLSFNISFDW 353
           ++ L L+ N+   EG   + +  L     LE L +   S         +S L+ N     
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--- 342

Query: 354 IPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLVLNSASISDT----LPSWFLQL 404
                L  L I   +L       L     +  + L  L L    +SD+    L +  L  
Sbjct: 343 -----LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL-AATLLA 396

Query: 405 NLTLDELDVGGNHLS 419
           N +L ELD+  N L 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 112 ISPSLLQLKDLEYLDLSLNNF-------------------KVLDLSNNGFNST----LPH 148
           +   L   + L+ L L+ N                     + L + +  F +        
Sbjct: 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335

Query: 149 WLFNITNLLSLDLSSNDLQGD----IPDGFSSLNS-LQLLDLSGNSFLE---GQLSRNLG 200
            L     LL L +S+N L+      +  G     S L++L L+     +     L+  L 
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 201 TLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLT 246
              +L+ L LS N      +   ++ + +      L +L L     +
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 46/239 (19%)

Query: 404 LNLTLDELDVGGNHLSGRIPNTLVFRFPGS--VDLSSNRF--EGPIPLWSSNLTKLYLRD 459
           ++L +  LD+    LS      L+        V L            + S+      L +
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 460 LDISFNSINGSIPQSVGN-LK----QLLTLVISNNNLS--------------------DM 494
           L++  N +       V   L+    ++  L + N  L+                     +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 495 TNNNFSGEIPESIGSLL-----TIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGEN 545
           ++N       + +   L      +  L L    LS      +   L+       L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 546 QLSG----NIPAWIGESMPSLSILRLRSNHFN----GTIPSELCKLSALHILDLSHNNL 596
            ++      +   + +S   L  L+L S          +   +   ++L  L L  N L
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 65/321 (20%), Positives = 120/321 (37%), Gaps = 38/321 (11%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D +L N   +    +    T+     ++  + +L      +   I  G   LN+L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 186 SGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYN 243
             N     Q++    L  L  +  L+LS N         +  ++   +   +  L+L   
Sbjct: 71  KDN-----QITDLAPLKNLTKITELELSGNPLKN-----VSAIAGLQS---IKTLDLTST 117

Query: 244 QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQ 303
           Q+T   P++   L NL+ L L  N  + +I P L  LT L+ L + + Q++         
Sbjct: 118 QITDVTPLA--GLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD--LTPLAN 171

Query: 304 LSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
           LS +  L+  DN+    I+D + L +L +L E+ L     S +S   +        L  +
Sbjct: 172 LSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNNQISDVSPLANTS-----NLFIV 222

Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
            +    +         N   +   V+   S +   P+     N T    ++  N  S   
Sbjct: 223 TLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISD-NGTYASPNLTWNLTSFIN 279

Query: 423 PNTLVFRFPGSVDLSSNRFEG 443
             +  F    +   ++  F G
Sbjct: 280 NVSYTFNQSVTFKNTTVPFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
            +   L  +  L           +            +  + NL+ L+L  N +  D+   
Sbjct: 35  VTQADLDGITTLSAFGTGVT--TIEG----------VQYLNNLIGLELKDNQIT-DLA-P 80

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
             +L  +  L+LSGN      L     +  L +++TL L+  Q +      +  L+   N
Sbjct: 81  LKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDLTSTQITD-----VTPLAGLSN 130

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
              L  L L  NQ+T N+   L  L NL+YL +     +  + P L NL+ L  L    N
Sbjct: 131 ---LQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN 183

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSL 337
           +++         L  +  + L +NQ    I+D + L N ++L  ++L
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 35/232 (15%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
             +  L +L  L+L  N     DL+           L N+T +  L+LS N L+ ++   
Sbjct: 57  EGVQYLNNLIGLELKDNQIT--DLAP----------LKNLTKITELELSGNPLK-NV-SA 102

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
            + L S++ LDL+     +      L  L NLQ L L LNQ +      I  L+   N  
Sbjct: 103 IAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITN-----ISPLAGLTN-- 152

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
            L  L +G  Q++ +L   L  L  L  L+   N  +  I P L +L  L E++L +NQ+
Sbjct: 153 -LQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQI 207

Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
           +          S + ++ L++      IT+  +    +L   +++K  + + 
Sbjct: 208 SDV--SPLANTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 37/255 (14%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
             L  L  +  L+LS N  K  ++S           +  + ++ +LDL+S  +  D+   
Sbjct: 79  APLKNLTKITELELSGNPLK--NVSA----------IAGLQSIKTLDLTSTQIT-DVT-P 124

Query: 174 FSSLNSLQLLDLSGNSFLEGQLS--RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
            + L++LQ+L L  N     Q++    L  L NLQ L +   Q S      +  L+    
Sbjct: 125 LAGLSNLQVLYLDLN-----QITNISPLAGLTNLQYLSIGNAQVSD-----LTPLANLSK 174

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
              L  L+   N+++ ++   L  L NL  + L  N  +  + P L N + L  + LT+ 
Sbjct: 175 ---LTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQ 227

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF 351
            +  +       L    V++         I  A + +  +    + +  + +S   N+S+
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGA---PIAPATISDNGTYASPN-LTWNLTSFINNVSY 283

Query: 352 DWIPPFKLRYLVIRY 366
            +      +   + +
Sbjct: 284 TFNQSVTFKNTTVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 28/268 (10%)

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
           +  ++  G + +T    ++   L  +  L  +    + +I   +  L  L  L L  NQ+
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI 75

Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFD 352
                     L+ I  LELS N     + + + +  L S++ L L  T  + ++      
Sbjct: 76  TD--LAPLKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 353 WIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELD 412
                 L+ L +   Q+     + L   T L  L + +A +SD  P   L     L  L 
Sbjct: 130 -----NLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLK 179

Query: 413 VGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP 472
              N +S  I           V L +N+     PL  +N +   L  + ++  +I     
Sbjct: 180 ADDNKISD-ISPLASLPNLIEVHLKNNQISDVSPL--ANTSN--LFIVTLTNQTITNQPV 234

Query: 473 QSVGNLKQLLTLVISNNNLSDMTNNNFS 500
               NL       +   + + +     S
Sbjct: 235 FYNNNLVVPNV--VKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 42/220 (19%), Positives = 92/220 (41%), Gaps = 27/220 (12%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
             +   +TTL      ++       +Q    L  L++  N ++  +           ++L
Sbjct: 37  QADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELEL 92

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
           S N  +    +  + L  +  + LD++   I    P +   L  L  L +  N +++++ 
Sbjct: 93  SGNPLKNVSAI--AGLQSI--KTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP 146

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
                     +  L  +++L + N  +S ++ P L N S + +L   +N++S +I     
Sbjct: 147 ----------LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DISPL-- 191

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            S+P+L  + L++N    +  S L   S L I+ L++  +
Sbjct: 192 ASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 27/220 (12%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
                    +    ++++DT+    L     +  L   G  ++  I           ++L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVT-TIEGVQYLNNLIGLEL 70

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
             N+     PL   NLTK+   +L++S N +      ++  L+ + TL +++  ++D+T 
Sbjct: 71  KDNQITDLAPL--KNLTKI--TELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
                     +  L  ++ L L  N ++  I P L   + +  L +G  Q+S ++     
Sbjct: 125 ----------LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP--L 169

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            ++  L+ L+   N    +  S L  L  L  + L +N +
Sbjct: 170 ANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQI 207

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.5 bits (190), Expect = 4e-15
 Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 21/257 (8%)

Query: 95  DSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNIT 154
           D  +      + +L        L       +    ++ K   L  +              
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDE 349

Query: 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL------------EGQLSRNLGTL 202
            L   +LS       +     S   LQ L+      L                   L   
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 203 CNLQTL-KLSLNQFSGEVSDFIDGLSECINSSSLAR-LELGYNQLTGNLPISLGYLKNLR 260
             L+ +  +         S F+   S      +  R L L +  LT  +   L  L  + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVT 466

Query: 261 YLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320
           +L+L +N  L ++PP+L  L  LE L  + N +  +  +    L  ++ L L +N+ +  
Sbjct: 467 HLDLSHNR-LRALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQS 523

Query: 321 ITDAHLRNLTSLEELSL 337
                L +   L  L+L
Sbjct: 524 AAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSS 176
             L  L +L+  L     LDLS+N     LP  L  +  L  L  S N L+ ++  G ++
Sbjct: 451 KDLTVLCHLE-QLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 177 LNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           L  LQ L L  N   +    + L +   L  L L  N   
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 16/214 (7%)

Query: 393 ISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNR-FEGPIPLWS-S 450
           +           + +  E  +  +       ++         +LS  +       L S  
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCK 372

Query: 451 NLTKLYLRDLDISFNSING--------SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGE 502
            L +L   +       I             +++     L  +        D   + F  E
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 503 IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 562
                     +R L L++  L+  +   L+   L+  LDL  N+L   +P  +  ++  L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCL 488

Query: 563 SILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
            +L+   N         +  L  L  L L +N L
Sbjct: 489 EVLQASDNAL--ENVDGVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 115 SLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGF 174
           +L     L+ +D     +     S     +++    +   ++  L L+  DL   +    
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLT--VLCHL 459

Query: 175 SSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS 234
             L  +  LDLS N      L   L  L  L+ L+ S N         +DG++       
Sbjct: 460 EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-----NVDGVANL---PR 509

Query: 235 LARLELGYNQLTGNLP--ISLGYLKNLRYLELWYN 267
           L  L L  N+L         L     L  L L  N
Sbjct: 510 LQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 44/280 (15%)

Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369
               ++Q              S +E  L+K        + +       +L    +   + 
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA----TDEQLFRCELSVEKS 361

Query: 370 GPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL------------TLDELD----- 412
                + L +  EL  L   +     T+      L+             TL  +D     
Sbjct: 362 -TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 413 ----VGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
               +    L       + +     + L+         L    L  +    LD+S N + 
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL--EQLLLV--THLDLSHNRLR 476

Query: 469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG-EI 527
            ++P ++  L+ L  L  S+N L ++          + + +L  ++ L+L NN L     
Sbjct: 477 -ALPPALAALRCLEVLQASDNALENV----------DGVANLPRLQELLLCNNRLQQSAA 525

Query: 528 PPSLKNCSLMDSLDLGENQLSG--NIPAWIGESMPSLSIL 565
              L +C  +  L+L  N L     I   + E +PS+S +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 451 NLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510
            +  +    LD   +               +  L +++ +L+ +            +  L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL----------CHLEQL 462

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
           L +  L LS+N L   +PP+L     ++ L   +N L  N+      ++P L  L L +N
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGV--ANLPRLQELLLCNN 518

Query: 571 HFNG-TIPSELCKLSALHILDLSHNNLLGPIPY 602
                     L     L +L+L  N+L      
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 114 PSLLQLKDLEYLDLS-------------LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLD 160
             L QL  + +LDLS             L   +VL  S+N     +   + N+  L  L 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQELL 514

Query: 161 LSSNDLQG-DIPDGFSSLNSLQLLDLSGN 188
           L +N LQ         S   L LL+L GN
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 11/236 (4%)

Query: 368 QLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQL--NLTLDELDVGGNHLSGRIPNT 425
           +      T +     L  L + +A I   +    L++     L EL +    ++G  P  
Sbjct: 55  EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114

Query: 426 LVFRFPGSV---DLSSNRFEGPIPLWS--SNLTKLYLRDLDISFNSINGSIPQSVGNLKQ 480
           L+      +   +L +  +       +      K  L+ L I+         + V     
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 540
           L TL +S+N          +   P    +L  +          SG           +  L
Sbjct: 175 LSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
           DL  N L     A   +    L+ L L        +P  L   + L +LDLS+N L
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 45/205 (21%), Positives = 59/205 (28%), Gaps = 34/205 (16%)

Query: 112 ISPSLLQLKDLEYLDLS------------------LNNFKVLDLSNNGFNSTLPHWLFNI 153
                    DL  L+L                       KVL ++     +     +   
Sbjct: 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172

Query: 154 TNLLSLDLSSNDLQGDIPDGFS----SLNSLQLLDLSGNSF--LEGQLSRNLGTLCNLQT 207
             L +LDLS N   G+     +       +LQ+L L         G  S        LQ 
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 208 LKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN 267
           L LS N           G   C   S L  L L +  L     +  G    L  L+L YN
Sbjct: 233 LDLSHNSLRD-----AAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYN 284

Query: 268 SFLGSIPPSLGNLTFLEELYLTSNQ 292
                  PS   L  +  L L  N 
Sbjct: 285 RL--DRNPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 435 DLSSNRFEGPIPLWSSNLTKL-YLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSD 493
            + + R    I   +  +  +  L++L +    + G+ P  +         +++  N+S 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 494 MTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP- 552
            T + +  E+ +       ++ L ++  H        ++    + +LDL +N   G    
Sbjct: 134 ATRDAWLAELQQW--LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 553 --AWIGESMPSLSILRLRSNHFN---GTIPSELCKLSALHILDLSHNNLLGPIP 601
             A      P+L +L LR+       G   +       L  LDLSHN+L     
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 14/160 (8%)

Query: 113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPD 172
              +     L  LDLS N            ++  P     +  L   +       G    
Sbjct: 166 CEQVRVFPALSTLDLSDNPELG---ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 173 GFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS 232
             ++   LQ LDLS NS  +   + +      L +L LS           +  + + +  
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG--------LKQVPKGL-P 273

Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS 272
           + L+ L+L YN+L    P     L  +  L L  N FL S
Sbjct: 274 AKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 11/231 (4%)

Query: 117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS- 175
           L   D+E      +   +L   +   +      +    +L  L + +  +   I  G   
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 176 --SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
              ++ LQ L L     + G     L          L+L   S    D      +     
Sbjct: 91  VLGISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS----LGNLTFLEELYLT 289
            L  L +            +     L  L+L  N  LG               L+ L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 290 SNQMN---GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
           +  M    G           ++ L+LS N              + L  L+L
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 13/180 (7%)

Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLK-QLLTLVISNNNLS- 492
           +  S  F  P P WSS    L   D+++     +        + +  L        +LS 
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 493 ---DMTNNNFSGEIPESIGSLLT---IRFLVLSNNHLSGEIPPSLKNCSL--MDSLDLGE 544
               +        I      +L    ++ L L N  ++G  PP L   +   ++ L+L  
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 545 NQLSGN---IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
              +     +        P L +L +   H       ++    AL  LDLS N  LG   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 31/230 (13%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSL 177
            +  +      L N    +L        +      ++ + + +  ++++Q  +  G    
Sbjct: 8   PINQVFPDP-GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFF 62

Query: 178 NSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
            +L+ L LS N     Q+S    L  L  L+ L ++ N+        ++G+        L
Sbjct: 63  TNLKELHLSHN-----QISDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSA----CL 108

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
           +RL L  N+L     +   +LKNL  L +  N  L SI   LG L+ LE L L  N++  
Sbjct: 109 SRLFLDNNELRDTDSLI--HLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEI-- 162

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
                  +L  +  ++L+  +      +  ++    L   + +K  +   
Sbjct: 163 TNTGGLTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 22/147 (14%)

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509
             L        ++   S+   + Q    L  +      N+N+  +            +  
Sbjct: 16  PGLANA--VKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG----------MQF 61

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
              ++ L LS+N +S ++ P LK+ + ++ L +  N+L  N+    G     LS L L +
Sbjct: 62  FTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDN 115

Query: 570 NHFNGTIPSELCKLSALHILDLSHNNL 596
           N         L  L  L IL + +N L
Sbjct: 116 NEL--RDTDSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 36/196 (18%)

Query: 116 LLQLKDLEYLDLS------------LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS 163
           +    +L+ L LS            L   + L ++ N   +           L  L L +
Sbjct: 59  MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDN 115

Query: 164 NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS--RNLGTLCNLQTLKLSLNQFSGEVSD 221
           N+L+ D  D    L +L++L +  N     +L     LG L  L+ L L  N+       
Sbjct: 116 NELR-DT-DSLIHLKNLEILSIRNN-----KLKSIVMLGFLSKLEVLDLHGNE------- 161

Query: 222 FIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNL 280
            I           +  ++L   +   N P+   Y   L       +     I P  + N 
Sbjct: 162 -ITNTGGLTRLKKVNWIDLTGQKCV-NEPVK--YQPELYITNTVKDPDGRWISPYYISNG 217

Query: 281 TFLEELYLTSNQMNGK 296
               +  +        
Sbjct: 218 GSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
            +  + +     ++++I        +Q    L EL +  N +S  +           + +
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSV 92

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
           + NR +       + +    L  L +  N +      S+ +LK L  L I NN L  +  
Sbjct: 93  NRNRLKNL-----NGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM 145

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548
                     +G L  +  L L  N ++      L     ++ +DL   +  
Sbjct: 146 ----------LGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCV 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 28/251 (11%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSL 177
            +K ++ +   L N   L L+ N      P  L N+ NL  L L  N ++ D+      L
Sbjct: 57  DIKSVQGIQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDL 111

Query: 178 NSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
             L+ L L  N      +S    L  L  L++L L  N+ +      I  LS     + L
Sbjct: 112 KKLKSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD-----ITVLS---RLTKL 158

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
             L L  NQ++ ++   L  L  L+ L L  N  +  +   L  L  L+ L L S +   
Sbjct: 159 DTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN 214

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355
           K       L     ++ +D      +T   + +    E+ ++        +  +SF +  
Sbjct: 215 KPINHQSNLVVPNTVKNTDGS---LVTPEIISDDGDYEKPNVKWHLPEFTN-EVSFIFYQ 270

Query: 356 PFKLRYLVIRY 366
           P  +     R+
Sbjct: 271 PVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 33/247 (13%)

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLK 209
                +  +L    +   +    + LNS+  +  + +      +     +  L N+  L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLF 74

Query: 210 LSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
           L+ N+ +      I  L+   N   L  L L  N++  +L  SL  LK L+ L L +N  
Sbjct: 75  LNGNKLTD-----IKPLANLKN---LGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNG- 123

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRN 328
           +  I   L +L  LE LYL +N++         +L+ +  L L DNQ    I+D   L  
Sbjct: 124 ISDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ----ISDIVPLAG 176

Query: 329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388
           LT L+ L L K   S L             L  L +   +   K      N     T+  
Sbjct: 177 LTKLQNLYLSKNHISDLRALAGLK-----NLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 389 NSASISD 395
              S+  
Sbjct: 232 TDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 59/307 (19%), Positives = 92/307 (29%), Gaps = 78/307 (25%)

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK 257
           +           L            +         +S+ ++    + +     I   YL 
Sbjct: 19  SDDAFAETIKDNLKKKS--------VTDAVTQNELNSIDQIIANNSDIKSVQGIQ--YLP 68

Query: 258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           N+  L L  N  L  I P L NL  L  L+L  N++  K   S   L  ++ L L  N  
Sbjct: 69  NVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNG- 123

Query: 318 EGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
              I+D   L +L  LE L L     + ++                              
Sbjct: 124 ---ISDINGLVHLPQLESLYLGNNKITDITV----------------------------- 151

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
           L   T+L TL L    ISD +P   L     L  L +  NH+S               DL
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS---------------DL 193

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
            +           + L  L    L++              NL    T+  ++ +L     
Sbjct: 194 RAL----------AGLKNL--DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 497 NNFSGEI 503
            +  G+ 
Sbjct: 242 ISDDGDY 248

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
                E     L   S++D +         ++D++    + +   +           + L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFL 75

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
           + N+     PL  +NL  L    L +  N +   +  S+ +LK+L +L + +N +SD+  
Sbjct: 76  NGNKLTDIKPL--ANLKNL--GWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDI-- 127

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
                     +  L  +  L L NN ++ +I   L   + +D+L L +NQ+S +I     
Sbjct: 128 --------NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPL-- 174

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602
             +  L  L L  NH   +    L  L  L +L+L     L     
Sbjct: 175 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 25/223 (11%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
                 +  ++ N++ I        +Q    + +L + GN L+  I      +  G + L
Sbjct: 42  QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFL 97

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
             N+ +    L   +L KL  + L +  N I  S    + +L QL +L + NN ++D+T 
Sbjct: 98  DENKVKDLSSL--KDLKKL--KSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITV 151

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
                     +  L  +  L L +N +S +I P L   + + +L L +N +S ++ A   
Sbjct: 152 ----------LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRAL-- 196

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGP 599
             + +L +L L S        +    L   + +  +  +L+ P
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 6e-13
 Identities = 78/474 (16%), Positives = 144/474 (30%), Gaps = 142/474 (29%)

Query: 42  VER-EALLQFKQNLT--DPSGRLS---------SWVGEDCCS-------------WRGVG 76
           V R +  L+ +Q L    P+  +          +WV  D C              W  + 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 77  CNNRTGSII--MLNLNNPFRDSFDSYEDDA------VHELRGKISPSLLQLKDLE--YLD 126
             N   +++  +  L      ++ S  D +      +H ++ ++   LL+ K  E   L 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLV 249

Query: 127 LS-------LNNF----KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           L         N F    K+L  +              +T+ LS   +++          +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFK----------QVTDFLSAATTTHISLDHHSMTLT 299

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLK--------LSLNQFSGEVSDFI---- 223
                 L            L + L   C  Q L           L+  +  + D +    
Sbjct: 300 PDEVKSL------------LLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 224 -------DGLSECINSSSLARLELG-----YNQLT---GNLPISLGYLKNL--------- 259
                  D L+  I  SSL  LE       +++L+    +  I    L  +         
Sbjct: 346 NWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 260 --------RY--LELWYNSFLGSIPPSLGNLTFLEELYLTSN--QMNGKFPESFGQLSAI 307
                   +Y  +E        SI PS+    +LE      N   ++    + +      
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-PSI----YLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 308 RVLELSDNQWEGFITDA---HLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364
              +L     + +       HL+N+   E ++L +     +  +  F ++   K+R+   
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLD--FRFLEQ-KIRHDST 512

Query: 365 RYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHL 418
            +   G    T       L  L      I D  P +   +N  LD L     +L
Sbjct: 513 AWNASGSILNT-------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 13/160 (8%)

Query: 160 DLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEV 219
           D S+  L   IP+          L L+ N F   + +     L  L+ +  S N+ +   
Sbjct: 17  DCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE 73

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPP-SL 277
               +G S       +  + L  N+L  N+   +   L++L+ L L  N  +  +   S 
Sbjct: 74  EGAFEGASG------VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNR-ITCVGNDSF 125

Query: 278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             L+ +  L L  NQ+    P +F  L ++  L L  N +
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 133 KVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
             L L+NN F       +F  +  L  ++ S+N +  DI +G F   + +  + L+ N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
           LE    +    L +L+TL L  N+ +   +D   GL      SS+  L L  NQ+T   P
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL------SSVRLLSLYDNQITTVAP 146

Query: 251 ISLGYLKNLRYLELWYNSF 269
            +   L +L  L L  N F
Sbjct: 147 GAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 435 DLSSNRFEG-PIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLS 492
            L++N F           L +L  R ++ S N I   I +        +  +++++N L 
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQL--RKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNI 551
           ++ +  F G        L +++ L+L +N ++  +   S    S +  L L +NQ++  +
Sbjct: 95  NVQHKMFKG--------LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TV 144

Query: 552 PAWIGESMPSLSILRLRSNHFN 573
                +++ SLS L L +N FN
Sbjct: 145 APGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 118 QLKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLS 162
               +  + L+ N              + K L L +N     + +  F  ++++  L L 
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLY 137

Query: 163 SNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
            N +   +  G F +L+SL  L+L  N F
Sbjct: 138 DNQITT-VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 493 DMTNNNFSGEIPESIGSLLT-IRFLVLSNNHLSGEIPP----SLKNCSLMDSLDLGENQL 547
            + NN F+      I   L  +R +  SNN ++ +I             ++ + L  N+L
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG---VNEILLTSNRL 93

Query: 548 SGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSALHILDLSHNNL 596
             N+   + + + SL  L LRSN     + ++    LS++ +L L  N +
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 13/167 (7%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSL 212
            +   LDL S  L       F  L  L  L+L  N      LS  +   L  L TL L+ 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLAN 92

Query: 213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLG 271
           NQ +       D L++      L +L LG NQL   LP  +   L  L+ L L  N  L 
Sbjct: 93  NQLASLPLGVFDHLTQ------LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ-LQ 144

Query: 272 SIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           SIP      LT L+ L L++NQ+      +F +L  ++ + L  NQ+
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 67/290 (23%)

Query: 112 ISPSLLQLKDLEYLDLSLNNF------------------KVLDLSNNGFN---------- 143
           +   LL+   ++ + LS N                    ++ + S+              
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 144 STLPHWLFNITNLLSLDLSSNDLQGD----IPDGFSSLNSLQLLDLSGNSF--------- 190
             L   L     L ++ LS N         + D  S    L+ L L  N           
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 191 ---LEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLT 246
               E  +++       L+++    N+     + ++            L  +++  N + 
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIR 200

Query: 247 -----GNLPISLGYLKNLRYLELWYNSF----LGSIPPSLGNLTFLEELYLTSNQMNGKF 297
                  L   L Y + L+ L+L  N+F      ++  +L +   L EL L    ++ + 
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 298 PESFGQL------SAIRVLELSDNQWEG----FITDAHLRNLTSLEELSL 337
             +            ++ L L  N+ E      +       +  L  L L
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 50/262 (19%), Positives = 80/262 (30%), Gaps = 58/262 (22%)

Query: 83  SIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF---------- 132
            + +   ++ F         +A+  L      +LL+   L  + LS N F          
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLL----LQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 133 --------KVLDLSNNGF-------------NSTLPHWLFNITNLLSLDLSSNDLQGD-- 169
                   + L L NNG                 +     N   L S+    N L+    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 170 --IPDGFSSLNSLQLLDLSGNSF----LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223
                 F S   L  + +  N      +E  L   L     L+ L L  N F+   S  +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 224 -DGLSECINSSSLARLELGYNQLT--GNLPIS--LGYLKN--LRYLELWYNSF----LGS 272
              L       +L  L L    L+  G   +      L+N  L+ L L YN      + +
Sbjct: 237 AIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 273 IPPSLG-NLTFLEELYLTSNQM 293
           +   +   +  L  L L  N+ 
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 29/193 (15%)

Query: 433 SVDLSSNRF--EGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNN 490
            + LS N    E    L  +  +K  L   + S         +    L+ LL  ++    
Sbjct: 36  EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95

Query: 491 LS--DMTNNNFSGEIPESIGSLL----TIRFLVLSNNHLSGE-------------IPPSL 531
           L    +++N F     E +   L     +  L L NN L  +             +    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 532 KNCSLMDSLDLGENQLSGNIPAWIGE---SMPSLSILRLRSNHFN-----GTIPSELCKL 583
           KN   + S+  G N+L         +   S   L  +++  N          +   L   
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 584 SALHILDLSHNNL 596
             L +LDL  N  
Sbjct: 216 QELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 52/362 (14%), Positives = 105/362 (29%), Gaps = 96/362 (26%)

Query: 179 SLQLLDLSGNSF-LEG--QLSRNLGTLCNLQTLKLSLNQFSGEVSDFI-DGLSECINSSS 234
           S++   L  ++   E    +   L    +++ + LS N    E + ++ + ++       
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK---KD 61

Query: 235 LARLELGYNQLTGNLPI----------SLGYLKNLRYLELWYNSF----LGSIPPSLGNL 280
           L   E                      +L     L  + L  N+F       +   L   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 281 TFLEELYLTSNQM-------------NGKFPESFGQLSAIRVLELSDNQWEGFITDA--- 324
           T LE LYL +N +                  +       +R +    N+    + +    
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR----LENGSMK 177

Query: 325 ----HLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ 380
                 ++   L  + +++                        IR   +       L   
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNG----------------------IRPEGIEHLLLEGLAYC 215

Query: 381 TELTTLVLNSASISDT----LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
            EL  L L   + +      L +  L+    L EL +    LS R          G+  +
Sbjct: 216 QELKVLDLQDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSAR----------GAAAV 264

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSING----SIPQSVG-NLKQLLTLVISNNNL 491
                +        N+    L+ L + +N I      ++   +   +  LL L ++ N  
Sbjct: 265 VDAFSKL------ENIG---LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

Query: 492 SD 493
           S+
Sbjct: 316 SE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 56/389 (14%), Positives = 110/389 (28%), Gaps = 104/389 (26%)

Query: 234 SLARLELGYNQLTG----NLPISLGYLKNLRYLELWYNSF----LGSIPPSLGNLTFLEE 285
           S+    L  + +T     ++   L    +++ + L  N+        +  ++ +   LE 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
              +         E    L  +                A L     L  + L        
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL--------------LQA-LLKCPKLHTVRL-------- 101

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPK----FPTWLRNQTELTTLVLNSASISD------ 395
           S N                     GP        +L   T L  L L++  +        
Sbjct: 102 SDN-------------------AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 396 ------TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
                    +   +    L  +  G N L                + +            
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLEN----------GSMKEWAK------TFQSH 186

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSG--EIPESI 507
             L  + +    I    I   + + +   ++L  L + +N  +        G   +  ++
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------LGSSALAIAL 240

Query: 508 GSLLTIRFLVLSNNHLS-------GEIPPSLKNCSLMDSLDLGENQLSGN----IPAWIG 556
            S   +R L L++  LS        +    L+N  L  +L L  N++  +    +   I 
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVID 299

Query: 557 ESMPSLSILRLRSNHFN--GTIPSELCKL 583
           E MP L  L L  N F+    +  E+ ++
Sbjct: 300 EKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 25/211 (11%)

Query: 121 DLEYLDLSLNNFKV--------------LDLSNNGFNSTLPHWLF-NITNLLSLDLSSND 165
             + L L   + +               + +S +     L    F N++ +  +++ +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 166 LQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS-DFI 223
               I       L  L+ L +             + +      L+++ N +   +  +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL--GNLT 281
            GL      +    L+L  N  T ++         L  + L  N +L  I      G  +
Sbjct: 152 QGL-----CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
               L ++   +     +    L  +     
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNN-LSDMTNNNFSGEIPESI 507
           SNL  +    + +S +     +      NL ++  + I N   L+ +  +          
Sbjct: 52  SNLPNI--SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE------ 103

Query: 508 GSLLTIRFLVLSNNHLSGEIPP--SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI- 564
             L  ++FL + N  L    P    + +  +   L++ +N    +IP    + + + ++ 
Sbjct: 104 --LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
           L+L +N F  ++       + L  + L+ N  L  I 
Sbjct: 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 42/301 (13%), Positives = 87/301 (28%), Gaps = 92/301 (30%)

Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTS 331
           S+PPS       + L L    +      +F  L  I  + +S +     +      NL+ 
Sbjct: 28  SLPPST------QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 332 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA 391
           +  + +   +  +L++      I P                    L+    L  L + + 
Sbjct: 82  VTHIEI--RNTRNLTY------IDP------------------DALKELPLLKFLGIFNT 115

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSN 451
            +        +        L++  N     IP               N F+G        
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIP--------------VNAFQG-------- 153

Query: 452 LTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNN-LSDMTNNNFSGEIPESIGSL 510
           L       L +  N    S+     N  +L  + ++ N  L+ +  + F G     + S 
Sbjct: 154 LCNE-TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-----VYSG 206

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
            ++                          LD+ +  ++  +P+   + +  L  L  R+ 
Sbjct: 207 PSL--------------------------LDVSQTSVT-ALPS---KGLEHLKELIARNT 236

Query: 571 H 571
            
Sbjct: 237 W 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 39/238 (16%)

Query: 258 NLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDN 315
           + + L+L     L +IP  +  NL  +  +Y++ +    +    SF  LS +  +E+ + 
Sbjct: 32  STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 316 QWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT 375
           +   +I    L+ L  L+ L +    N+ L         P                   T
Sbjct: 91  RNLTYIDPDALKELPLLKFLGI---FNTGLKM------FPDL-----------------T 124

Query: 376 WLRNQTELTTLVLNSASISDTLPSW-FLQLNLTLDELDVGGNHLSGRIPNTLVFRFP--G 432
            + +      L +       ++P   F  L      L +  N  +  +     F      
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY-AFNGTKLD 182

Query: 433 SVDLSSNRFEGPIPLWS-SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNN 489
           +V L+ N++   I   +   +       LD+S  S+  ++P     L+ L  L+  N 
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSG-PSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG 508
            NL+K+    ++I        I       L  L  L I N  L    +          + 
Sbjct: 77  YNLSKV--THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK-------VY 127

Query: 509 SLLTIRFLVLSNNHLSGEIPPSL--KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILR 566
           S      L +++N     IP +     C+   +L L  N  + ++  +       L  + 
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185

Query: 567 LRSNHFNGTIPSELCK--LSALHILDLSHNNL 596
           L  N +   I  +      S   +LD+S  ++
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 42/172 (24%)

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNN- 490
              ++    +  IP    +   L L +  +       +IP     NL  +  + +S +  
Sbjct: 15  DFRVTCKDIQR-IPSLPPSTQTLKLIETHLR------TIPSHAFSNLPNISRIYVSIDVT 67

Query: 491 LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQLSG 549
           L  + +++F          L  +  + + N      I P  LK   L+  L +    L  
Sbjct: 68  LQQLESHSFYN--------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118

Query: 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
                     P L+ +                      IL+++ N  +  IP
Sbjct: 119 --------MFPDLTKVYS---------------TDIFFILEITDNPYMTSIP 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 35/167 (20%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
             +  + L  N ++   P  FS    L+ +DLS N                +  L     
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---------------ISEL----- 71

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGS 272
                   F  GL        L  L L  N++T  LP SL   L +L+ L L  N  +  
Sbjct: 72  ----APDAF-QGLRS------LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK-INC 118

Query: 273 IPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
           +   +  +L  L  L L  N++      +F  L AI+ + L+ N + 
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 133 KVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
             + L  N     +P   F     L  +DLS+N +  ++    F  L SL  L L GN  
Sbjct: 35  TEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK- 91

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
           +          L +LQ L L+ N+ +    D    L       +L  L L  N+L     
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL------HNLNLLSLYDNKLQTIAK 145

Query: 251 ISLGYLKNLRYLELWYNSF 269
            +   L+ ++ + L  N F
Sbjct: 146 GTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 26/125 (20%)

Query: 111 KISPSLLQ-LKDLEYLDLS--------------LNNFKVLDLSNNGFNSTLPHWLF-NIT 154
            I P      K L  +DLS              L +   L L  N   + LP  LF  + 
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLF 104

Query: 155 NLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGN---SFLEGQLSRNLGTLCNLQTLKL 210
           +L  L L++N +   +    F  L++L LL L  N   +  +G  S     L  +QT+ L
Sbjct: 105 SLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP----LRAIQTMHL 159

Query: 211 SLNQF 215
           + N F
Sbjct: 160 AQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 458 RDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
            ++ +  N+I   IP       K+L  + +SNN +S++  + F G        L ++  L
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSLNSL 85

Query: 517 VLSNNHLSGEIPPSL-KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575
           VL  N ++ E+P SL +    +  L L  N+++  +     + + +L++L L  N     
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 576 IPSELCKLSALHILDLSHN 594
                  L A+  + L+ N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 435 DLSSNRFEGPIPLWS-SNLTKLYLRDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLS 492
            L  N  +  IP  + S   KL  R +D+S N I+  +       L+ L +LV+  N ++
Sbjct: 38  RLEQNTIKV-IPPGAFSPYKKL--RRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNI 551
           ++  + F G        L +++ L+L+ N ++  +   + ++   ++ L L +N+L   I
Sbjct: 94  ELPKSLFEG--------LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TI 143

Query: 552 PAWIGESMPSLSILRLRSNHFN 573
                  + ++  + L  N F 
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 19/119 (15%)

Query: 483 TLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP----SLKNCSLMD 538
            + +  N +  +    FS            +R + LSNN +S E+ P     L++   ++
Sbjct: 36  EIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQIS-ELAPDAFQGLRS---LN 83

Query: 539 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSALHILDLSHNNL 596
           SL L  N+++  +P  + E + SL +L L +N  N  +  +    L  L++L L  N L
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 119 LKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLF-NITNLLSLDLS 162
             DLE +++S N+                  + +        +    F N+ NL  L +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 163 SNDLQGDIPDG-FSSLNSLQLLDLSGNSFLEGQLSRNL--GTLCNLQTLKLSLNQFSGEV 219
           +  ++  +PD          LLD+  N  +   + RN   G       L L+ N      
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 220 SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLG 278
           +   +G                 N L                L++     + S+P   L 
Sbjct: 171 NSAFNGT------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLE 223

Query: 279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315
           NL  L      + +   K P +  +L A+    L+  
Sbjct: 224 NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 23/224 (10%)

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDV-GGNHLSGRIPNTLVFRFPG--S 433
                +L  + ++   + + + +        L E+ +   N+L   I        P    
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 108

Query: 434 VDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV--GNLKQLLTLVISNNNL 491
           + +S+   +    +   +  +     LDI  N    +I ++   G   + + L ++ N +
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQK--VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 492 SDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGN 550
            ++ N+ F+G               +  NN+L  E+P       S    LD+   ++  +
Sbjct: 167 QEIHNSAFNG--------TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-S 216

Query: 551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 594
           +P++  E++  L      +      +P+ L KL AL    L++ 
Sbjct: 217 LPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 14/149 (9%)

Query: 457 LRDLDISFNSINGSIPQSV-GNLKQLLTLVISN-NNLSDMTNNNFSGEIPESIGSLLTIR 514
           L  ++IS N +   I   V  NL +L  + I   NNL  +    F          L  ++
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN--------LPNLQ 107

Query: 515 FLVLSNNHLSGEIPPSLKNCSL-MDSLDLGENQLSGNIPAWIGESMPS-LSILRLRSNHF 572
           +L++SN  +   +P   K  SL    LD+ +N     I       +     IL L  N  
Sbjct: 108 YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 573 NGTIPSELCKLSALHILDLSHNNLLGPIP 601
              I +     + L  L+LS NN L  +P
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELP 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 15/135 (11%)

Query: 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
            IP  +   +  + L      L  +    FSG           +  + +S N +   I  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSG--------FGDLEKIEISQNDVLEVIEA 72

Query: 530 S-LKNCSLMDSLDL-GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSAL 586
               N   +  + +   N L   I     +++P+L  L + +      +P          
Sbjct: 73  DVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQK 130

Query: 587 HILDLSHNNLLGPIP 601
            +LD+  N  +  I 
Sbjct: 131 VLLDIQDNINIHTIE 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
            +  +L  ++ +  + ++ K +     G             N+  L L  N L  DI   
Sbjct: 35  VTQNELNSIDQIIANNSDIKSV----QGIQYL--------PNVRYLALGGNKLH-DIS-A 80

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS 232
              L +L  L L+GN      L   +   L NL+ L L  NQ         D L+     
Sbjct: 81  LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---- 134

Query: 233 SSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTS 290
             L  L L +NQL  +LP  +   L NL  L+L YN  L S+P  +   LT L++L L  
Sbjct: 135 --LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQW 317
           NQ+       F +L++++ + L DN W
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDNPW 217

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
              +  +L    +   +    + LNS+  +  + +     +  + +  L N++ L L  N
Sbjct: 19  AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVRYLALGGN 73

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
           +   ++S     L+       L  L L  NQL          L NL+ L L  N  L S+
Sbjct: 74  KLH-DISAL-KELTN------LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124

Query: 274 PPSLGN-LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           P  + + LT L  L L  NQ+       F +L+ +  L+LS NQ
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 34/165 (20%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           TN   L L  N +    P  F SL +L+ L L  N                L  L     
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---------------LGAL----- 79

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGS 272
                V  F D L++      L  L+LG NQLT  LP ++   L +L+ L +  N  L  
Sbjct: 80  ----PVGVF-DSLTQ------LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNK-LTE 126

Query: 273 IPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           +P  +  LT L  L L  NQ+      +F +LS++    L  N W
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 118 QLKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS 163
            L  L  LDL  N              + K L +  N     LP  +  +T+L  L L  
Sbjct: 86  SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQ 144

Query: 164 NDLQGDIPDG-FSSLNSLQLLDLSGN 188
           N L+  IP G F  L+SL    L GN
Sbjct: 145 NQLKS-IPHGAFDRLSSLTHAYLFGN 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 7e-08
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
           +    L   +NL  L +     L  +    L  L  L  L +  + +    P++F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 307 IRVLELSDNQ 316
           +  L LS N 
Sbjct: 82  LSRLNLSFNA 91

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRN 328
                  L     L ELY+ + Q            L  +R L +  +    F+       
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHF 78

Query: 329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364
              L  L+L   S ++L   +S+  +    L+ LV+
Sbjct: 79  TPRLSRLNL---SFNALES-LSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 114 PSLLQLKDLEYLDLSLNNF---------------KVLDLSNNGFNSTLPHWLFNITNLLS 158
             L   ++L  L +                    + L +  +G     P        L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           L+LS N L+         L SLQ L LSGN  
Sbjct: 85  LNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGN--SFLEGQLSRNLGT 201
              H L    NL  L + +      +       L  L+ L +  +   F+          
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP- 80

Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
              L  L LS N         + GL       SL  L L  N L 
Sbjct: 81  --RLSRLNLSFNALESLSWKTVQGL-------SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 470 SIPQSVGNLKQLLTLVISNNN-LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
                +   + L  L I N   L  +   +  G        L  +R L +  + L   + 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKSGLR-FVA 72

Query: 529 P-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573
           P +      +  L+L  N L       +     SL  L L  N  +
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTV--QGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 163 SNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222
           + D   D         +L  L +     L+    R+L  L  L+ L +  +       D 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
                       L+RL L +N L  +L        +L+ L L  N  
Sbjct: 76  FHFT------PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 20/149 (13%)

Query: 156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLN 213
            + L      ++  +    S+L + + L LS N      + +  +L  + NL+ L L  N
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRN 80

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273
                    I+ L    ++  L  L + YNQ+  +L   +  L NLR L +  N  + + 
Sbjct: 81  LIKK-----IENLDAVADT--LEELWISYNQIA-SLS-GIEKLVNLRVLYMSNN-KITNW 130

Query: 274 PP--SLGNLTFLEELYLTSNQMNGKFPES 300
                L  L  LE+L L  N +   + E+
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 111 KISPSLLQLKDLEYLDLSLN------------NFKVLDLSNNGFNSTLPHWLFNITNLLS 158
           K+  +L  LK  ++L LS N            N ++L L  N     + +       L  
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEE 97

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE 218
           L +S N +   +  G   L +L++L +S N          L  L  L+ L L+ N    +
Sbjct: 98  LWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 219 VS 220
             
Sbjct: 156 YK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS-LGYL 256
              ++   +  K+ L+     +      LS          L L  N +     IS L  +
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKA---CKHLALSTNNIEK---ISSLSGM 69

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           +NLR L L  N  +  I         LEEL+++ NQ+         +L  +RVL +S+N+
Sbjct: 70  ENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNK 126

Query: 317 WEGFITDAHLRNLTSLEELSL 337
              +     L  L  LE+L L
Sbjct: 127 ITNWGEIDKLAALDKLEDLLL 147

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 237 RLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNG 295
            L L  NQ T  +P  L   K+L  ++L  N  + ++      N+T L  L L+ N++  
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
             P +F  L ++R+L L  N     + +    +L++L  L++
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFL 191
             L L  N F + +P  L N  +L  +DLS+N +   + +  FS++  L  L LS N   
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN--- 88

Query: 192 EGQLS----RNLGTLCNLQTLKLSLNQ 214
             +L     R    L +L+ L L  N 
Sbjct: 89  --RLRCIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 36/140 (25%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
            ++  L L  N     +P   S+   L L+DLS N     ++S             LS  
Sbjct: 31  RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNN-----RIS------------TLSNQ 72

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGS 272
            F          +++      L  L L YN+L   +P      LK+LR L L  N  +  
Sbjct: 73  SF--------SNMTQ------LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGND-ISV 116

Query: 273 IPP-SLGNLTFLEELYLTSN 291
           +P  +  +L+ L  L + +N
Sbjct: 117 VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 260 RYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319
             L L  N     +P  L N   L  + L++N+++    +SF  ++ +  L LS N+   
Sbjct: 34  TELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 320 FITDAHLRNLTSLEELSL 337
            I       L SL  LSL
Sbjct: 93  -IPPRTFDGLKSLRLLSL 109

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 67/364 (18%), Positives = 114/364 (31%), Gaps = 80/364 (21%)

Query: 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGD-- 169
           +         +  LDLSLNN     L +      +  +     ++ SL+LS N L     
Sbjct: 14  VEEFTSIPHGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68

Query: 170 --IPDGFSSLN-SLQLLDLSGNSFLEG---QLSRNL-GTLCNLQTLKLSLNQFSGE-VSD 221
             +    +++  ++  L+LSGN        +L + L      +  L L  N FS +  S+
Sbjct: 69  DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128

Query: 222 FIDGLSECINSSSLARLELGYNQLTGNLPISLGYL-----KNLRYLELWYNSF------- 269
           F    S     +S+  L L  N L       L  +      N+  L L  N+        
Sbjct: 129 FKQAFSNL--PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186

Query: 270 ----LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL-----SAIRVLELSDNQWEGF 320
               L SIP S      +  L L++N +  K       +     + +  L L  N     
Sbjct: 187 LAKFLASIPAS------VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC---- 236

Query: 321 ITDAHLRNLTSLEELSLIKTSNSSL-SFNISFDWIPPF----------------KLRYLV 363
           +         SLE L L+K S   L +  + +D +                   K+  + 
Sbjct: 237 LHGP------SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 364 IRYYQLGPKFPTWL-----RNQTELTTLVLNSASISDT----LPSWFLQLNLTLDELDVG 414
               ++ P     +         +     L +  +            L +   L E    
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 415 GNHL 418
              L
Sbjct: 351 CKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 40/289 (13%), Positives = 83/289 (28%), Gaps = 65/289 (22%)

Query: 358 KLRYLVIRYYQLGPK-----FPTWLRNQTELTTLVLNSASISDT----LPSWFLQLNLTL 408
            +  L +    L           +      +T+L L+  S+       L      +   +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 409 DELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468
             L++ GN LS +           S +L        +      +T L L   D S  S +
Sbjct: 83  TSLNLSGNFLSYK----------SSDELVKT-----LAAIPFTITVLDLGWNDFSSKSSS 127

Query: 469 GSIPQSVGNLKQLLTLVISNNNLSD---------------------MTNNNFSGEIPESI 507
                       + +L +  N+L                       +  NN + +    +
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187

Query: 508 GSLL-----TIRFLVLSNNHLSGE----IPPSLKNC-SLMDSLDLGENQLSGNIPAWIGE 557
              L     ++  L LS N L  +    +     +  + + SL+L  N L G     +  
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 558 SM---PSLSILRLRSNHFNGT-------IPSELCKLSALHILDLSHNNL 596
                  L  + L  +            + +    +  + ++D +   +
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 206 QTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLEL 264
             L+L  N+         D L++      L +L L  NQ+  +LP  +   L  L  L L
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQ------LTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83

Query: 265 WYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             N  L S+P  +   LT L+EL L +NQ+       F +L++++ + L  N W
Sbjct: 84  HENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 18/87 (20%)

Query: 118 QLKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLS 162
           +L  L  L LS N                 +L L  N   S LP+ +F  +T L  L L 
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108

Query: 163 SNDLQGDIPDG-FSSLNSLQLLDLSGN 188
           +N L+  +PDG F  L SLQ + L  N
Sbjct: 109 TNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
           + + ++ L L  +   EG+L         L+ L       +      I  L +      L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKLNK---L 66

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF--LGSIPPSLGNLTFLEELYLTSN 291
            +LEL  N+++G L +      NL +L L  N    L +I P L  L  L+ L L + 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 231 NSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLT 289
             S +  L L  ++   G L       + L +L       L SI  +L  L  L++L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA-NLPKLNKLKKLELS 72

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI 338
            N+++G       +   +  L LS N+ +   T   L+ L +L+ L L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509
           S++ +L L +   +     G +       ++L  L   N  L+ + N          +  
Sbjct: 17  SDVKELVLDNSRSN----EGKLEGLTDEFEELEFLSTINVGLTSIAN----------LPK 62

Query: 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
           L  ++ L LS+N +SG +    + C  +  L+L  N++         + + +L  L L +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 570 N 570
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 103 DAVHELRGKISPSLLQLKDLEYLDLS------------LNNFKVLDLSNNGFNSTLPHWL 150
           D      GK+     + ++LE+L               LN  K L+LS+N  +  L    
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 151 FNITNLLSLDLSSNDLQG-DIPDGFSSLNSLQLLDLSGN 188
               NL  L+LS N ++     +    L +L+ LDL   
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQ 214
           L LD S ++  G +         L+ L           L+   NL  L  L+ L+LS N+
Sbjct: 22  LVLDNSRSNE-GKLEGLTDEFEELEFLSTINV-----GLTSIANLPKLNKLKKLELSDNR 75

Query: 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYN 267
            SG +    +         +L  L L  N++   +    L  L+NL+ L+L+  
Sbjct: 76  VSGGLEVLAEKC------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235
           +  +++ L L      +G++        NL+ L L            +  L +      L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPK---L 73

Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF--LGSIPPSLGNLTFLEELYLTSN 291
            +LEL  N++ G L +    L NL +L L  N    + ++ P L  L  L+ L L + 
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 231 NSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLT 289
             +++  L L   +   G +        NL +L L     L S+   L  L  L++L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSN-LPKLPKLKKLELS 79

Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
            N++ G       +L  +  L LS N+ +   T   L+ L  L+ L L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 477 NLKQLLTLVISNNNLSDMT------NNNFSGEIPESIGSLLTIRFLVLSNNHLSG-EIPP 529
           ++K+ + L + N   + +         +  G+I       + + FL L N  L      P
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP 68

Query: 530 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN--GTIPSELCKLSALH 587
            L        L+L EN++       + E +P+L+ L L  N      T+   L KL  L 
Sbjct: 69  KLPKLK---KLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLK 123

Query: 588 ILDLSHN 594
            LDL + 
Sbjct: 124 SLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 103 DAVHELRGKISPSLLQLKDLEYLDLS------------LNNFKVLDLSNNGFNSTLPHWL 150
           D      GKI     +  +LE+L L             L   K L+LS N     L    
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 151 FNITNLLSLDLSSNDLQ--GDIPDGFSSLNSLQLLDLSGN 188
             + NL  L+LS N L+    + +    L  L+ LDL   
Sbjct: 92  EKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 457 LRDLDISFNSIN-GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF 515
           +R+L +     N G I         L  L + N  L  ++N          +  L  ++ 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----------LPKLPKLKK 75

Query: 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
           L LS N + G +    +    +  L+L  N+L         + +  L  L L + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNS--TLPHWLFNITNLLSLDLSSNDLQGDIPDGFS 175
           ++  +E L  +L+ F  +D S+N        P     +  L +L +++N +         
Sbjct: 30  KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNNNRICRIGEGLDQ 85

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
           +L  L  L L+ NS +E      L +L +L  L +  N
Sbjct: 86  ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 159 LDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR--NLGTLC-NLQTLKLSLNQF 215
           + L++  ++      +++    + LDL G      ++    NLG        +  S N+ 
Sbjct: 2   VKLTAELIE-QAA-QYTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEI 54

Query: 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN--SFLGSI 273
                  +DG         L  L +  N++          L +L  L L  N    LG +
Sbjct: 55  RK-----LDGFPLLRR---LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106

Query: 274 PPSLGNLTFLEELYLTSN 291
            P L +L  L  L +  N
Sbjct: 107 DP-LASLKSLTYLCILRN 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 37/221 (16%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSL--------NSLQLLDLSGNSFLEGQLSRNLGTLCNL 205
           ++L  L+L+   +    P   + +        ++L  ++L+        L   L      
Sbjct: 72  SSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 206 QTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGN----LPISLGYLKNLR 260
           + L L LN    E   D  D L    +   +  L L  N LT      L   L    ++ 
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLH--DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 261 YLELWYNSF----LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL----SAIRVLEL 312
           +L L +       L  +   L     L+EL +  N        +  +      ++ +L L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 313 SDNQWEGFITDA-------HLRNLTSLEELSLIKTSNSSLS 346
             N+    ++                   + +  T  +++S
Sbjct: 247 YFNE----LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/256 (16%), Positives = 74/256 (28%), Gaps = 50/256 (19%)

Query: 120 KDLEYLDLSLNNF---------------KVLDLSNNGFN--------STLPHWLFNITNL 156
             L+ ++L+                   + L L  N             L H   +   +
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH---DQCQI 157

Query: 157 LSLDLSSNDLQGD----IPDGFSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLK 209
            +L LS+N L       + +G +   S+  L L      +     L+  L     LQ L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 210 LSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGN----LPISLGYLKNLRYLEL 264
           ++ N                     SL  L L +N+L+      L    G  +    + +
Sbjct: 218 VAYNGAGDTAALALARAAR---EHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274

Query: 265 WYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ--WEGFIT 322
              S       S      L E+    N  +    +   +L    + +L D++        
Sbjct: 275 ---SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL---LRDLEDSRGATLNPWR 328

Query: 323 DAH-LRNLTSLEELSL 337
            A  LR    +  L  
Sbjct: 329 KAQLLRVEGEVRALLE 344

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 35/166 (21%)

Query: 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213
                LDL +N L+      F  L SL  L L GN                LQ+L     
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---------------LQSLP---- 68

Query: 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGS 272
                 +   + L+       L  L L  NQL  +LP  +   L  L+ L L  N  L S
Sbjct: 69  ------NGVFNKLTS------LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQ-LQS 114

Query: 273 IPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
           +P  +   LT L++L L  NQ+       F +L++++ + L DN W
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 49/163 (30%), Positives = 65/163 (39%), Gaps = 37/163 (22%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFL 191
             LDL  N   S        +T+L  L L  N LQ  +P+G F+ L SL  L+LS N   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN--- 86

Query: 192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI 251
             QL              L    F        D L++      L  L L  NQL  +LP 
Sbjct: 87  --QLQ------------SLPNGVF--------DKLTQ------LKELALNTNQLQ-SLPD 117

Query: 252 SL-GYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQ 292
            +   L  L+ L L+ N  L S+P      LT L+ ++L  N 
Sbjct: 118 GVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 133 KVLDLSNNGFNSTLPHWLFN-ITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
             L L++N         LF  + +L+ L+L  N L   I    F   + +Q L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGEN-- 88

Query: 191 LEGQLS----RNLGTLCNLQTLKLSLNQ 214
              ++     +    L  L+TL L  NQ
Sbjct: 89  ---KIKEISNKMFLGLHQLKTLNLYDNQ 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 206 QTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264
             L L+ N+            L        L +LEL  NQLTG  P +     +++ L+L
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPH------LVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 265 WYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
             N  +  I   +   L  L+ L L  NQ++   P SF  L+++  L L+ N +
Sbjct: 86  GENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 118 QLKDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLFN-ITNLLSLDLS 162
           +L  L  L+L  N              + + L L  N     + + +F  +  L +L+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLY 110

Query: 163 SNDLQGDIPDG-FSSLNSLQLLDLSGNSF 190
            N +   +  G F  LNSL  L+L+ N F
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 181 QLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLEL 240
             L L+ N           G L +L  L+L  NQ +G   +  +G S       +  L+L
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH------IQELQL 85

Query: 241 GYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSN 291
           G N++   +   +   L  L+ L L+ N  +  + P S  +L  L  L L SN
Sbjct: 86  GENKIK-EISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 58/288 (20%), Positives = 110/288 (38%), Gaps = 24/288 (8%)

Query: 69  CCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLS 128
           C  W  +  +      + L   N   D         V   R   S     L +      S
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH----FS 91

Query: 129 LNNFKVLDLSNNGFN-STLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSG 187
               + +DLSN+    STL   L   + L +L L    L   I +  +  ++L  L+LSG
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 188 NSFLEGQLSRNLGTLC-NLQTLKLSLNQFSGEVSDFIDGLSECI--NSSSLARLEL-GYN 243
            S       + L + C  L  L LS   +  + ++    +   +   S ++ +L L GY 
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLS---WCFDFTE--KHVQVAVAHVSETITQLNLSGYR 206

Query: 244 QLTGNLPIS--LGYLKNLRYLELWYNSFLGSIP-PSLGNLTFLEELYLTS-NQMNGKFPE 299
           +      +S  +    NL +L+L  +  L +        L +L+ L L+    +  +   
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 300 SFGQLSAIRVLELSDNQWEGFITDAHLRNL-TSLEELSLIKTSNSSLS 346
             G++  ++ L++      G + D  L+ L  +L  L +  +  ++++
Sbjct: 267 ELGEIPTLKTLQVF-----GIVPDGTLQLLKEALPHLQINCSHFTTIA 309

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 81/472 (17%), Positives = 151/472 (31%), Gaps = 73/472 (15%)

Query: 121 DLEYLDLSLNNFKVLDLSN-NGFNST-LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSL- 177
            LE +  S  NFKVL LS+  GF++  L        NL  LDL  +D+        S   
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 178 ---NSLQLLDLSGNSFLEGQLS-RNLGTLC-NLQTLKLSLNQFSGEVSDFIDGLSECINS 232
               SL  L++S  +      +   L T C NL++LKL+    +  +      L      
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN---RAVPLEKLATLLQRA--- 234

Query: 233 SSLARLELGY------NQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEEL 286
             L  L  G         +   L ++L   K LR L  ++++    +P      + L  L
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 287 YLTSNQMNGKFPESFGQ-LSAIRVLELSDNQWEGFITDAHL----RNLTSLEELSLIKTS 341
            L+   +              ++ L + D      I DA L         L EL +  + 
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----IEDAGLEVLASTCKDLRELRVFPSE 349

Query: 342 NSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWF 401
              +  N++        +                      +L +++     +++      
Sbjct: 350 PFVMEPNVALTEQGLVSV-----------------SMGCPKLESVLYFCRQMTNAALITI 392

Query: 402 LQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDL- 460
            +    +    +           TL     G   +  +           +L +L L  L 
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH---------CKDLRRLSLSGLL 443

Query: 461 -DISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLS 519
            D  F  I           K++  L ++    SD+        +   +    ++R L + 
Sbjct: 444 TDKVFEYI-------GTYAKKMEMLSVAFAGDSDLG-------MHHVLSGCDSLRKLEIR 489

Query: 520 NNHLSGE-IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
           +     + +  +      M SL +    +S      +G+ MP L++  +   
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 74/492 (15%), Positives = 143/492 (29%), Gaps = 58/492 (11%)

Query: 122 LEYLDLSLN-NFKVLDLSNNGFNSTLPHWLFNI----TNLLSLDLSSNDLQGDIPDGFS- 175
           +  ++L    +F   +L  +G+   +  W+  +    T L  + L    +  D  +  + 
Sbjct: 68  VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK 127

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLC-NLQTLKLSLNQFSGEVSDFIDGLSECINSSS 234
           S  + ++L LS            +   C NL+ L L  +        ++    +    +S
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--TYTS 185

Query: 235 LARLEL-GYNQLTGNLPIS--LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYL--- 288
           L  L +           +   +    NL+ L+L     L  +   L     LEEL     
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 289 ---TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
                  +      +      +R L    +    ++  A     + L  L+L   +  S 
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQSY 304

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
                        L  L              L    +L  L +    I D          
Sbjct: 305 D------------LVKL--------------LCQCPKLQRLWVLD-YIEDAGLEVLASTC 337

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
             L EL V  +      PN  +    G V +S              L  +      ++  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMG---------CPKLESVLYFCRQMTNA 387

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSG 525
           ++  +I ++  N+ +    +I       +T           +     +R L LS      
Sbjct: 388 ALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK 446

Query: 526 EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS-NHFNGTIPSELCKLS 584
                      M+ L +     S      +     SL  L +R     +  + +   KL 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 585 ALHILDLSHNNL 596
            +  L +S  ++
Sbjct: 507 TMRSLWMSSCSV 518

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHW-----LFNITNLLSLDLSSNDLQGDIPD 172
            L +LE L L +         + GF+  +  +          NL  L +   + Q  + +
Sbjct: 217 DLPNLEKLVLYVGV------EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270

Query: 173 GFSS---LNSLQLLDLSGNSFLEG---QLSRNLGTLCNLQTLKLSLNQFSGE 218
            F     L  L+ +D+S     +     L  ++  + +L+ + +  N  S E
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 7e-05
 Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 20/161 (12%)

Query: 449 SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG 508
            ++   L+  D+D     I      S      L  ++ +   L+++     +  +     
Sbjct: 138 FAHFEGLFWGDIDFEEQEI------SWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGKK 190

Query: 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSL--MDSLDL--------GENQLSGNIPAWIGES 558
               ++ L + +  L   +   +    L  ++ L L         +  ++   P +  + 
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 559 MPSLSILRLRSNHFNGTIPSELCK---LSALHILDLSHNNL 596
            P+L  L +        +     +   L  L  +D+S   L
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 25/197 (12%), Positives = 63/197 (31%), Gaps = 31/197 (15%)

Query: 408 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI 467
             ++D     +S      L         L++ + +G   L      +  L+ L+I    +
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 468 NGSIPQSVG-----NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH 522
             S+ + +      NL++L+  V   +   D   N F      S      +++L + +  
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF--SKDRFPNLKWLGIVDAE 263

Query: 523 LSGEIPPSLKNCSLMD---SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 579
               +        ++    ++D+    L+      + + +                    
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD------------------- 304

Query: 580 LCKLSALHILDLSHNNL 596
             K+  L  +++ +N L
Sbjct: 305 --KIKHLKFINMKYNYL 319

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 70/493 (14%), Positives = 145/493 (29%), Gaps = 68/493 (13%)

Query: 122 LEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNI--TNLLSLDLSSNDLQGDIPDGFSSL-- 177
           +  +  +L   K +       +      L      +L +L L          DG  S+  
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT--DGLLSIVT 161

Query: 178 --NSLQLLDLSGNSFLE--GQLSRNLGTLC-NLQTLKLSLNQFSGEVSDFIDGLSECINS 232
               ++ L +  +SF E  G+    L     +L+ L   + +F+      ++ ++   N 
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--NC 219

Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
            SL  +++G  ++   +        NL        +    +P    NL F  +L      
Sbjct: 220 RSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 293 MNGK--FPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT-SNSSLSFNI 349
             G    P  F   + IR L+L     E       ++   +LE L       +  L    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338

Query: 350 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLD 409
            +      +L+ L              +    +   +      +S        Q    L+
Sbjct: 339 QY----CKQLKRLR-------------IERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381

Query: 410 ELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLD----ISFN 465
            + V  + ++     ++                        NL    L  LD    I+  
Sbjct: 382 YMAVYVSDITNESLESIGTYLK-------------------NLCDFRLVLLDREERITDL 422

Query: 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLL-TIRFLVLSNNHLS 524
            ++  +   +   K+L                  +      IG     +R+++L     S
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAFYLRQ------GGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 525 GE-IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL--- 580
            E +    + C  +  L++     S    A     +PSL  L ++    + T    +   
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536

Query: 581 CKLSALHILDLSH 593
                + ++    
Sbjct: 537 RPYWNIELIPSRR 549

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 128 SLNNFKVLDLSNNGFNSTLPHWLFN-ITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDL 185
            L     LDL NN     LP  +F+ +T L  L L+ N L+  IP G F +L SL  + L
Sbjct: 52  RLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWL 109

Query: 186 SGN 188
             N
Sbjct: 110 LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSN 291
           ++   L L  NQ+T   P     L  L  L+L  N  L  +P  +   LT L +L L  N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN 88

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQW 317
           Q+      +F  L ++  + L +N W
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWLLNNPW 114

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 128 SLNNFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDL 185
            L N + L  ++N   + +P  +F  +T L  LDL+ N L+  IP G F +L SL  + L
Sbjct: 55  HLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYL 112

Query: 186 SGN 188
             N
Sbjct: 113 YNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSN 291
           +   RL L  NQ+T   P    +L NL+ L    N  L +IP  +   LT L +L L  N
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQW 317
            +      +F  L ++  + L +N W
Sbjct: 92  HLKSIPRGAFDNLKSLTHIYLYNNPW 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	611
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.5

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-73  Score=641.84  Aligned_cols=547  Identities=33%  Similarity=0.460  Sum_probs=426.4

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEeCCCCCCCC--------------------
Q 047139           38 GCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDS--------------------   96 (611)
Q Consensus        38 ~~~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~--------------------   96 (611)
                      .+.++|++||++||+++.||. .+++| .+.+||+|+||+|+  +|||++|++++....+                    
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            346899999999999999998 89999 68899999999998  6999999998753321                    


Q ss_pred             ----------------CCcccccccccceeeeCc--cccCCCCCCEEECCCC---------------CCCeEEccCCcCc
Q 047139           97 ----------------FDSYEDDAVHELRGKISP--SLLQLKDLEYLDLSLN---------------NFKVLDLSNNGFN  143 (611)
Q Consensus        97 ----------------~~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~ls~n---------------~l~~L~L~~n~l~  143 (611)
                                      .++.++++.+.+.|.+|.  .++++++|++|++++|               ++++|++++|.++
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                            134456666777777776  7777777777777766               2447777777777


Q ss_pred             cCCCcc---ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc
Q 047139          144 STLPHW---LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS  220 (611)
Q Consensus       144 ~~~p~~---l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  220 (611)
                      +..|..   +.++++|++|++++|.+.+..|.  .++++|++|++++|. +.+.+|. ++++++|++|++++|.+++.+|
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence            766665   66677777777777776655443  677788888888887 5555665 7888888888888888888888


Q ss_pred             hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc-ccCceEEecCCccccCCCc
Q 047139          221 DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL-TFLEELYLTSNQMNGKFPE  299 (611)
Q Consensus       221 ~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~  299 (611)
                      ..+..++      +|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|.
T Consensus       241 ~~l~~l~------~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~  312 (768)
T 3rgz_A          241 RAISTCT------ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP  312 (768)
T ss_dssp             HHTTTCS------SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred             HHHhcCC------CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence            7777776      7777777777776666554  66667777777777766666666554 6777777777777766777


Q ss_pred             CCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC----------------------CceeeccCCCCC--
Q 047139          300 SFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS----------------------SLSFNISFDWIP--  355 (611)
Q Consensus       300 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~--  355 (611)
                      .++++++|++|++++|.+.+.+|...+..+++|++|++++|...                      .+.+..+.....  
T Consensus       313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~  392 (768)
T 3rgz_A          313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP  392 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred             HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence            67777777777777777766666655666777777766664221                      122223333333  


Q ss_pred             CcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceE
Q 047139          356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSV  434 (611)
Q Consensus       356 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l  434 (611)
                      +++|++|++++|.+.+.+|.++..+++|++|++++|++++.+|..+... ++|++|++++|++.+.+|..+... .++.+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            5678888888888888899999999999999999999999888887764 789999999999999999888755 89999


Q ss_pred             EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC----------------CCCCCc
Q 047139          435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNNN  498 (611)
Q Consensus       435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~----------------~l~~n~  498 (611)
                      ++++|++++.+|..+..++.|  ++|++++|++++.+|.+++.+++|++|++++|+++                +++.|.
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNL--NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTC--CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EecCCcccCcCCHHHhcCCCC--CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            999999999999887777665  66777999988888888888888888888888776                566777


Q ss_pred             ccccCcccc----------------------------------------------------------------------c
Q 047139          499 FSGEIPESI----------------------------------------------------------------------G  508 (611)
Q Consensus       499 ~~g~ip~~~----------------------------------------------------------------------~  508 (611)
                      ++|.+|..+                                                                      +
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            776666543                                                                      3


Q ss_pred             CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCE
Q 047139          509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI  588 (611)
Q Consensus       509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  588 (611)
                      .+++|++|||++|+++|.+|..+++++.|+.|+|++|+++|.+|..++. +++|++|+|++|+++|.+|..+..+++|++
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            4577889999999999999999999999999999999999999998886 999999999999999999999999999999


Q ss_pred             eeccCCcCccCCCcc
Q 047139          589 LDLSHNNLLGPIPYC  603 (611)
Q Consensus       589 L~ls~n~l~g~iP~~  603 (611)
                      ||+++|+++|.||..
T Consensus       709 L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEM  723 (768)
T ss_dssp             EECCSSEEEEECCSS
T ss_pred             EECcCCcccccCCCc
Confidence            999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.6e-62  Score=551.79  Aligned_cols=499  Identities=31%  Similarity=0.453  Sum_probs=342.9

Q ss_pred             CcEEEEeCCCCCCC-----------CCCcccccccccceeeeCcc---ccCCCCCCEEECCCC------------CCCeE
Q 047139           82 GSIIMLNLNNPFRD-----------SFDSYEDDAVHELRGKISPS---LLQLKDLEYLDLSLN------------NFKVL  135 (611)
Q Consensus        82 ~~v~~l~l~~~~~~-----------~~~~~~~~~~~~l~~~~~~~---l~~l~~L~~L~ls~n------------~l~~L  135 (611)
                      .+++.|++++....           ..++.+++..+.+.+..+..   +.++++|++|++++|            ++++|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  205 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL  205 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence            36788888874221           11455667777787777766   778888888888877            34588


Q ss_pred             EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139          136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF  215 (611)
Q Consensus       136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  215 (611)
                      ++++|.+++.+|. ++++++|++|++++|.+++.+|..++++++|++|++++|. +.+.+|..  .+++|++|++++|.+
T Consensus       206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~--~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGPIPPL--PLKSLQYLSLAENKF  281 (768)
T ss_dssp             ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEESCCCC--CCTTCCEEECCSSEE
T ss_pred             ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCccCcc--ccCCCCEEECcCCcc
Confidence            8888888887776 8888888888888888888888888888888888888887 45555543  566666666666666


Q ss_pred             CCccchhhhcC-cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCcc
Q 047139          216 SGEVSDFIDGL-SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQM  293 (611)
Q Consensus       216 ~~~~~~~l~~l-~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  293 (611)
                      ++.+|..+... +      +|++|++++|++++.+|..++++++|++|++++|.+++.+|.. +.++++|++|++++|.+
T Consensus       282 ~~~ip~~~~~~~~------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          282 TGEIPDFLSGACD------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             EESCCCCSCTTCT------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CCccCHHHHhhcC------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            66666555443 3      6666666666666666666666666666666666666555554 56666666666666666


Q ss_pred             ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcC--CCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccC
Q 047139          294 NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRN--LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG  370 (611)
Q Consensus       294 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  370 (611)
                      ++.+|..+..++ +|++|++++|.+.+.++. .+..  +++|++|++++  + .+.+..+..+..+++|+.|++++|.+.
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~--n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQN--N-GFTGKIPPTLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCS--S-EEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCC--C-ccccccCHHHhcCCCCCEEECcCCccc
Confidence            655665555554 556666666555555444 2322  45566666655  2 334444555555556666666666666


Q ss_pred             cccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCCC
Q 047139          371 PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLWS  449 (611)
Q Consensus       371 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~~  449 (611)
                      +.+|..+..+++|++|++++|.+.+.+|..+... ++|++|++++|++++.+|..+... .++.|++++|++++.+|.++
T Consensus       432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            6666666666666666666666666555555442 456666666666665555555433 56666666666666666555


Q ss_pred             CCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC-------------------------------------
Q 047139          450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS-------------------------------------  492 (611)
Q Consensus       450 ~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-------------------------------------  492 (611)
                      ..+..|  ++|++++|++++.+|..++++++|++|++++|+++                                     
T Consensus       511 ~~l~~L--~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          511 GRLENL--AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GGCTTC--CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             hcCCCC--CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence            544443  44555666666666666666666666666555331                                     


Q ss_pred             -------------------------------------------------CCCCCcccccCcccccCcCCCCEEECcCCcc
Q 047139          493 -------------------------------------------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHL  523 (611)
Q Consensus       493 -------------------------------------------------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l  523 (611)
                                                                       +++.|.++|.+|..++++++|+.|+|++|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence                                                             4567788899999999999999999999999


Q ss_pred             cccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc-CccC
Q 047139          524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN-LLGP  599 (611)
Q Consensus       524 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~g~  599 (611)
                      +|.+|..++++++|++|||++|+++|.+|..+.. +++|++|++++|+++|.+|+. ..+..+....+.+|+ +.|.
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            9999999999999999999999999999999986 999999999999999999976 456667777788886 6764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.6e-55  Score=483.59  Aligned_cols=456  Identities=21%  Similarity=0.344  Sum_probs=300.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCC--------CCCC-CCCCCCCc---ccEEecCCCCcEEEEeCCCCCCCCCCcccccccc
Q 047139           39 CKEVEREALLQFKQNLTDPSGR--------LSSW-VGEDCCSW---RGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVH  106 (611)
Q Consensus        39 ~~~~~~~~ll~~k~~~~~~~~~--------~~~W-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~  106 (611)
                      ....|++||.++++++.+|...        ..+| .+.+||.|   .||+|+.. |||++|+|++              +
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------------~   91 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------------F   91 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTT--------------S
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecC--------------c
Confidence            3457999999999998765432        2379 67899999   99999864 9999999999              8


Q ss_pred             cceeeeCccccCCCCCCEEECCCCCCC-----------------------eEEcc-------------------------
Q 047139          107 ELRGKISPSLLQLKDLEYLDLSLNNFK-----------------------VLDLS-------------------------  138 (611)
Q Consensus       107 ~l~~~~~~~l~~l~~L~~L~ls~n~l~-----------------------~L~L~-------------------------  138 (611)
                      ++.|.+|++++++++|++|++++|+++                       .++++                         
T Consensus        92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~  171 (636)
T 4eco_A           92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ  171 (636)
T ss_dssp             CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred             ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence            999999999999999999999999651                       01111                         


Q ss_pred             --------------------CCcCccCCCccccCCCCCCEEEccCCCCCCC-----------------CCccCC--CCCC
Q 047139          139 --------------------NNGFNSTLPHWLFNITNLLSLDLSSNDLQGD-----------------IPDGFS--SLNS  179 (611)
Q Consensus       139 --------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~  179 (611)
                                          .|.+++ +|..++++++|++|++++|.+++.                 +|+.++  ++++
T Consensus       172 ~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~  250 (636)
T 4eco_A          172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD  250 (636)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred             ccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence                                445555 666666666666666666666654                 666666  6666


Q ss_pred             CCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCc--ccCC
Q 047139          180 LQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPI--SLGY  255 (611)
Q Consensus       180 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~--~l~~  255 (611)
                      |++|++++|. +.+.+|..++++++|++|++++|+ +++ .+|..++.+.....+++|++|++++|+++ .+|.  .+++
T Consensus       251 L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~  328 (636)
T 4eco_A          251 LTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK  328 (636)
T ss_dssp             CCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred             CCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence            6666666666 455666666666666666666666 666 56666555411112226666666666666 5665  6666


Q ss_pred             CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC-CCEEEccCCccccccChhhhcCCCCCCE
Q 047139          256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA-IRVLELSDNQWEGFITDAHLRNLTSLEE  334 (611)
Q Consensus       256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~L~~  334 (611)
                      +++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|. .+..      
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~------  398 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDA------  398 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCT------
T ss_pred             CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhh------
Confidence            6666666666666666666 5666666666666666666 55655666666 666666666655 2332 1111      


Q ss_pred             EEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc-------CCCCCCEEEccCcccccccchhHHhcCCC
Q 047139          335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR-------NQTELTTLVLNSASISDTLPSWFLQLNLT  407 (611)
Q Consensus       335 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  407 (611)
                                         ..+++|+.|++++|.+.+..|..+.       .+++|++|++++|+++ .+|..++..+++
T Consensus       399 -------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~  458 (636)
T 4eco_A          399 -------------------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP  458 (636)
T ss_dssp             -------------------TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred             -------------------cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC
Confidence                               1123678888888888888888887       7788999999999988 677777766678


Q ss_pred             CCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh--ccCCCCeEE
Q 047139          408 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG--NLKQLLTLV  485 (611)
Q Consensus       408 L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~  485 (611)
                      |++|++++|+++ .+|......               .+..+.+++.  |++|++++|.++ .+|..+.  .+++|++|+
T Consensus       459 L~~L~Ls~N~l~-~i~~~~~~~---------------~~~~~~~l~~--L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~  519 (636)
T 4eco_A          459 LSSINLMGNMLT-EIPKNSLKD---------------ENENFKNTYL--LTSIDLRFNKLT-KLSDDFRATTLPYLVGID  519 (636)
T ss_dssp             CSEEECCSSCCS-BCCSSSSEE---------------TTEECTTGGG--CCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred             CCEEECCCCCCC-CcCHHHhcc---------------ccccccccCC--ccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence            888888888887 555432110               0000011112  244455777666 5666665  677777777


Q ss_pred             CcCCCCCCCCCCcccccCcccccCcCCCCEEEC------cCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcC
Q 047139          486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL------SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM  559 (611)
Q Consensus       486 L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l  559 (611)
                      +++|+++         .+|..++.+++|++|++      ++|++.+.+|..+.++++|++|++++|++ +.+|..+   .
T Consensus       520 Ls~N~l~---------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~---~  586 (636)
T 4eco_A          520 LSYNSFS---------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI---T  586 (636)
T ss_dssp             CCSSCCS---------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---C
T ss_pred             CCCCCCC---------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH---h
Confidence            7766554         25666666777777777      34555666666666666666666666666 3566553   2


Q ss_pred             CCCcEEECcCCcCcc
Q 047139          560 PSLSILRLRSNHFNG  574 (611)
Q Consensus       560 ~~L~~L~ls~n~l~~  574 (611)
                      ++|++|++++|++..
T Consensus       587 ~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          587 PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TTCCEEECCSCTTCE
T ss_pred             CcCCEEECcCCCCcc
Confidence            566666666665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-53  Score=479.50  Aligned_cols=472  Identities=19%  Similarity=0.284  Sum_probs=282.8

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCC------CCCC--CCc------------ccEEecCCCCcEEEEeCCCCCCCC
Q 047139           37 SGCKEVEREALLQFKQNLTDPSGRLSSWV------GEDC--CSW------------RGVGCNNRTGSIIMLNLNNPFRDS   96 (611)
Q Consensus        37 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~------~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~   96 (611)
                      +++..+|++||++||+++.+|     +|.      ..+|  |.|            .||+|+. .+||++|+|++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----  332 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----  332 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence            445678999999999999887     562      2355  999            9999986 69999999999     


Q ss_pred             CCcccccccccceeeeCccccCCCCCCEEEC-CCCCCCe-----------------------------------------
Q 047139           97 FDSYEDDAVHELRGKISPSLLQLKDLEYLDL-SLNNFKV-----------------------------------------  134 (611)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l-s~n~l~~-----------------------------------------  134 (611)
                               +++.|.+|++++++++|++|+| ++|.+..                                         
T Consensus       333 ---------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          333 ---------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             ---------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             ---------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence                     8999999999999999999999 7664310                                         


Q ss_pred             ------------------------EEc--cCCcCccCCCccccCCCCCCEEEccCCCCCC-----------------CCC
Q 047139          135 ------------------------LDL--SNNGFNSTLPHWLFNITNLLSLDLSSNDLQG-----------------DIP  171 (611)
Q Consensus       135 ------------------------L~L--~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p  171 (611)
                                              +.+  ..|.+++ +|..++++++|++|+|++|.+++                 .+|
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                                    000  1233443 44445555555555555555554                 144


Q ss_pred             ccCC--CCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCC-ccchhhhcCc-ccCCCCCCcEEEccCCCCC
Q 047139          172 DGFS--SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSG-EVSDFIDGLS-ECINSSSLARLELGYNQLT  246 (611)
Q Consensus       172 ~~l~--~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-~~~~~~~L~~L~Ls~n~l~  246 (611)
                      +.++  ++++|++|++++|. +.+.+|..++++++|++|++++|+ +++ .+|..++.++ .+..+++|++|++++|+++
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            4444  45555555555554 344444445555555555555554 444 4444444332 2233334444444444444


Q ss_pred             ccCCc--ccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC-CCEEEccCCccccccCh
Q 047139          247 GNLPI--SLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA-IRVLELSDNQWEGFITD  323 (611)
Q Consensus       247 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~  323 (611)
                       .+|.  .++++++|++|++++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+| 
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-  635 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-  635 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-
Confidence             4444  4444444444444444444 444 4444444444444444444 44444444444 444444444443 222 


Q ss_pred             hhhcCCCCCCEEEcCccCCCCceeeccCCCCCC--cceeEEEecccccCcccchhc---c--CCCCCCEEEccCcccccc
Q 047139          324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP--FKLRYLVIRYYQLGPKFPTWL---R--NQTELTTLVLNSASISDT  396 (611)
Q Consensus       324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~l---~--~~~~L~~L~l~~n~l~~~  396 (611)
                                                 ..+...  ++|+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .
T Consensus       636 ---------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~  687 (876)
T 4ecn_A          636 ---------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K  687 (876)
T ss_dssp             ---------------------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S
T ss_pred             ---------------------------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c
Confidence                                       222222  347777777777776555322   2  3357888888888888 6


Q ss_pred             cchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh
Q 047139          397 LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG  476 (611)
Q Consensus       397 ~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~  476 (611)
                      +|..++..+++|+.|++++|++. .+|......               .+..+.+++.|  ++|+|++|+++ .+|..+.
T Consensus       688 lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~---------------~~~~l~nl~~L--~~L~Ls~N~L~-~lp~~l~  748 (876)
T 4ecn_A          688 FPTELFATGSPISTIILSNNLMT-SIPENSLKP---------------KDGNYKNTYLL--TTIDLRFNKLT-SLSDDFR  748 (876)
T ss_dssp             CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC---------------TTSCCTTGGGC--CEEECCSSCCC-CCCGGGS
T ss_pred             cCHHHHccCCCCCEEECCCCcCC-ccChHHhcc---------------ccccccccCCc--cEEECCCCCCc-cchHHhh
Confidence            77777766678888888888887 555433210               00001111222  44555777776 5666665


Q ss_pred             --ccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC------CcccccCcccccCCCCCCEEECCCCcCc
Q 047139          477 --NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN------NHLSGEIPPSLKNCSLMDSLDLGENQLS  548 (611)
Q Consensus       477 --~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  548 (611)
                        .+++|+.|+|++|+++         .+|..++.+++|+.|+|++      |++.+.+|..+.++++|+.|+|++|++ 
T Consensus       749 ~~~l~~L~~L~Ls~N~L~---------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-  818 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFS---------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-  818 (876)
T ss_dssp             TTTCTTCCEEECCSSCCS---------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             hccCCCcCEEEeCCCCCC---------ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence              6777777777776654         2566666777777777755      666667777777777777777777777 


Q ss_pred             ccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcC
Q 047139          549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL  596 (611)
Q Consensus       549 ~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  596 (611)
                      +.+|..+   .++|+.|+|++|++...-+..++....+..+.+.+|++
T Consensus       819 ~~Ip~~l---~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          819 RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CBCCSCC---CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CccCHhh---cCCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            4677663   35777777777777765555555554555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.4e-51  Score=456.81  Aligned_cols=513  Identities=24%  Similarity=0.245  Sum_probs=375.7

Q ss_pred             CCcccEEecC---------CCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCC---------
Q 047139           70 CSWRGVGCNN---------RTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNN---------  131 (611)
Q Consensus        70 c~w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~---------  131 (611)
                      |.++.|.|..         ...+++.|++++              +.+++..+..+.++++|++|++++|.         
T Consensus         4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   69 (680)
T 1ziw_A            4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTH--------------NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC   69 (680)
T ss_dssp             CBSSEEECCSSCCSSCCSCSCTTCSEEECCS--------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred             eECCeeECCCCCccccccccCCCCcEEECCC--------------CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence            4455566642         124677777777              78888777789999999999999885         


Q ss_pred             -----CCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCC
Q 047139          132 -----FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQ  206 (611)
Q Consensus       132 -----l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  206 (611)
                           +++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|. +.+..|..++++++|+
T Consensus        70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCC
T ss_pred             hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCC
Confidence                 3589999999987666689999999999999999997777889999999999999999 6777788899999999


Q ss_pred             EEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC---------------------------CCC
Q 047139          207 TLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL---------------------------KNL  259 (611)
Q Consensus       207 ~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---------------------------~~L  259 (611)
                      +|++++|.+++..+..+..+.    +++|++|++++|.+++..|..+..+                           ++|
T Consensus       149 ~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L  224 (680)
T 1ziw_A          149 ELLLSNNKIQALKSEELDIFA----NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI  224 (680)
T ss_dssp             EEECCSSCCCCBCHHHHGGGT----TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred             EEEccCCcccccCHHHhhccc----cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence            999999999988887765331    2289999999999998777766543                           567


Q ss_pred             cEEEccCCcccccCCCCccCccc--CceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEc
Q 047139          260 RYLELWYNSFLGSIPPSLGNLTF--LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL  337 (611)
Q Consensus       260 ~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  337 (611)
                      ++|++++|.+++..|.++..++.  |++|++++|.+++..|..++.+++|++|++++|.+.+..+. .+.++++|+.|++
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  303 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNL  303 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEEC
T ss_pred             cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEec
Confidence            88888889898888888888765  99999999999988888899999999999999999886665 7899999999999


Q ss_pred             CccCCCC------ceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc-chh-HHhc-CCCC
Q 047139          338 IKTSNSS------LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL-PSW-FLQL-NLTL  408 (611)
Q Consensus       338 ~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~-~~~~-~~~L  408 (611)
                      +++....      +.......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.... +.. +... .++|
T Consensus       304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L  383 (680)
T 1ziw_A          304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL  383 (680)
T ss_dssp             TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred             cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence            8743211      11111225567889999999999999988888999999999999988754332 221 1111 2478


Q ss_pred             CEEEccCcccccccCcccccC-CCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEEC
Q 047139          409 DELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVI  486 (611)
Q Consensus       409 ~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  486 (611)
                      +.|++++|++++..|..+... .++.+++++|.+++.+| ..+..+..|  ++|++++|++.+..+..|..+++|++|++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI--FEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC--CEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc--cEEecCCCCcceeChhhhhcCcccccchh
Confidence            888888888887777666544 78888888888877665 344444444  55666777777766677777777777777


Q ss_pred             cCCCCC------------------CCCCCcccccCcccccCcCCCCEEECcCCcccccCc--------ccccCCCCCCEE
Q 047139          487 SNNNLS------------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP--------PSLKNCSLMDSL  540 (611)
Q Consensus       487 ~~n~i~------------------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L  540 (611)
                      ++|.+.                  +++.|.+++..|..+..+++|++|++++|++++..+        ..+.++++|++|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            776653                  223333443333445556666666666666653211        125566666666


Q ss_pred             ECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccc
Q 047139          541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVG  605 (611)
Q Consensus       541 ~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~  605 (611)
                      ++++|+++ .+|...+..+++|++|++++|++++..+..|..+++|++|++++|++++..|..++
T Consensus       542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             ECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            66666666 45554333466666666666666654444556666677777777766666555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.1e-51  Score=455.70  Aligned_cols=500  Identities=22%  Similarity=0.209  Sum_probs=367.2

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCC--------------CeEEccCCcCccCCC
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLP  147 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l--------------~~L~L~~n~l~~~~p  147 (611)
                      .+++.|++++              +.+.+..|..+.++++|++|++++|++              ++|++++|.+++..|
T Consensus        49 ~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           49 SQLTSLDVGF--------------NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             TTCSEEECCS--------------SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred             CcCcEEECCC--------------CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence            4677788877              677777777888888888888887743              478888888887777


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC--CCCCCCEEEcccccCCCccchhhhc
Q 047139          148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG--TLCNLQTLKLSLNQFSGEVSDFIDG  225 (611)
Q Consensus       148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~  225 (611)
                      ..|+++++|++|++++|.+++..|..++++++|++|++++|. +++..+..+.  .+++|++|++++|.+++..|..+..
T Consensus       115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence            788889999999999998888888888888999999999888 4555555443  5578888888888888777766655


Q ss_pred             CcccC---------------------CCCCCcEEEccCCCCCccCCcccCCCCC--CcEEEccCCcccccCCCCccCccc
Q 047139          226 LSECI---------------------NSSSLARLELGYNQLTGNLPISLGYLKN--LRYLELWYNSFLGSIPPSLGNLTF  282 (611)
Q Consensus       226 l~~~~---------------------~~~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~  282 (611)
                      +..+.                     ..++|++|++++|.+++..|..+..++.  |++|++++|.+++..|..++.+++
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ  273 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence            43221                     0124455555555555444444444432  555555555555444444555555


Q ss_pred             CceEEecCCccccCCCc---------------------------------CCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139          283 LEELYLTSNQMNGKFPE---------------------------------SFGQLSAIRVLELSDNQWEGFITDAHLRNL  329 (611)
Q Consensus       283 L~~L~L~~n~l~~~~~~---------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  329 (611)
                      |++|++++|.+.+..|.                                 .+..+++|++|++++|.+.+..+. .+.++
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l  352 (680)
T 1ziw_A          274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGL  352 (680)
T ss_dssp             CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTC
T ss_pred             ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-Hhccc
Confidence            55555555544444333                                 345556666666666666654333 56667


Q ss_pred             CCCCEEEcCccCCCCceeeccCCC--CCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCC
Q 047139          330 TSLEELSLIKTSNSSLSFNISFDW--IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT  407 (611)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  407 (611)
                      ++|++|++++|.. .........+  .....|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|...+..+++
T Consensus       353 ~~L~~L~Ls~n~~-~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~  431 (680)
T 1ziw_A          353 INLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN  431 (680)
T ss_dssp             TTCCEEECTTCBS-CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred             cCCcEEECCCCch-hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence            7777777776432 1111111111  122578888888888888888889999999999999999988887555555689


Q ss_pred             CCEEEccCcccccccCcccccC-CCceEEccCCccc--ccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139          408 LDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFE--GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL  484 (611)
Q Consensus       408 L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~--~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L  484 (611)
                      |++|++++|++.+..+..+... .++.+++++|.+.  +.+|..+..++.|  ++|++++|++++..+..|..+++|++|
T Consensus       432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L--~~L~Ls~N~l~~i~~~~~~~l~~L~~L  509 (680)
T 1ziw_A          432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL--TILDLSNNNIANINDDMLEGLEKLEIL  509 (680)
T ss_dssp             CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC--CEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC--CEEECCCCCCCcCChhhhccccccCEE
Confidence            9999999999987777666644 8999999999887  5677777777766  778889999998888889999999999


Q ss_pred             ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139          485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI  564 (611)
Q Consensus       485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~  564 (611)
                      ++++|+++.+....+.+..+..+..+++|++|+|++|+++...+..|..+++|+.|++++|+++ .+|...+..+++|++
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKS  588 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCE
Confidence            9999998866554444444445788999999999999999544457999999999999999999 677766556999999


Q ss_pred             EECcCCcCcccCCcccc-CCCCCCEeeccCCcCccCCC
Q 047139          565 LRLRSNHFNGTIPSELC-KLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       565 L~ls~n~l~~~~p~~l~-~l~~L~~L~ls~n~l~g~iP  601 (611)
                      |++++|++++..|..+. .+++|+++++++|++....+
T Consensus       589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             EECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999988777777 78999999999999988766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-51  Score=449.63  Aligned_cols=484  Identities=20%  Similarity=0.149  Sum_probs=323.6

Q ss_pred             cccEEecCC---------CCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcC
Q 047139           72 WRGVGCNNR---------TGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGF  142 (611)
Q Consensus        72 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l  142 (611)
                      +..|.|...         ...++.|++++              +.+++..|..+.++++|++|++++|+++         
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------   70 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSF--------------NVLPTIQNTTFSRLINLTFLDLTRCQIY---------   70 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTT--------------CCCSEECTTTSTTCTTCSEEECTTCCCC---------
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccC--------------CccCcCChhHhccCccceEEECCCCccc---------
Confidence            556777532         23567777777              8898888889999999999999988653         


Q ss_pred             ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139          143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF  222 (611)
Q Consensus       143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  222 (611)
                       +..|..|.++++|++|++++|.+++..|..|+++++|++|++++|+ +.+..+..++++++|++|++++|.+++.....
T Consensus        71 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (606)
T 3t6q_A           71 -WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK  148 (606)
T ss_dssp             -EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred             -eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCccc
Confidence             2334445555555555555555554445555555555555555555 33333444555555555555555554432222


Q ss_pred             hhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCc--EEEccCCcccccCCCCccC---------------------
Q 047139          223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR--YLELWYNSFLGSIPPSLGN---------------------  279 (611)
Q Consensus       223 l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~---------------------  279 (611)
                      +..++      +|++|++++|.+++..|..++.+++|+  .|++++|.+++..|..+..                     
T Consensus       149 ~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  222 (606)
T 3t6q_A          149 GFPTE------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL  222 (606)
T ss_dssp             TCCCT------TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHT
T ss_pred             ccCCc------ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhc
Confidence            22233      555555555555544444455555555  4555555554443333221                     


Q ss_pred             ----------------------------cc--cCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139          280 ----------------------------LT--FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL  329 (611)
Q Consensus       280 ----------------------------l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  329 (611)
                                                  +.  +|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+
T Consensus       223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l  300 (606)
T 3t6q_A          223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGL  300 (606)
T ss_dssp             TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSC
T ss_pred             cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhccc
Confidence                                        11  5777788888877766666788888888888888876 3555 57778


Q ss_pred             CCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccch-hccCCCCCCEEEccCccccccc--chhHHhcCC
Q 047139          330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTL--PSWFLQLNL  406 (611)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~  406 (611)
                      ++|++|++++|..   ....+..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++..  |..+.. ++
T Consensus       301 ~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~  376 (606)
T 3t6q_A          301 STLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LS  376 (606)
T ss_dssp             TTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CT
T ss_pred             ccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CC
Confidence            8888888887433   333344556677888888888877765554 4777888888888888887655  444443 46


Q ss_pred             CCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCC-CCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139          407 TLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL  484 (611)
Q Consensus       407 ~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~-~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L  484 (611)
                      +|++|++++|++.+..|..+... .++.+++++|.+++..|.. +..+..|  ++|++++|.+++..|..+..+++|++|
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL--KVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC--CEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC--CEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            88888888888877777666543 7888888888887765543 5555544  556668888887778888888888888


Q ss_pred             ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139          485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI  564 (611)
Q Consensus       485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~  564 (611)
                      ++++|++.+..     -..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.. ++.| +
T Consensus       455 ~L~~n~l~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~  527 (606)
T 3t6q_A          455 NLQGNHFPKGN-----IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-Y  527 (606)
T ss_dssp             ECTTCBCGGGE-----ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-E
T ss_pred             ECCCCCCCccc-----cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc-cccc-E
Confidence            88887664210     012345677888888888888888777888888888888888888888777777765 8888 8


Q ss_pred             EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139          565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP  601 (611)
                      |++++|++++..|..+..+++|++|++++|++.+..+
T Consensus       528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8888888887777778888888888888888887665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.3e-50  Score=443.78  Aligned_cols=465  Identities=20%  Similarity=0.164  Sum_probs=391.9

Q ss_pred             eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 047139          111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF  190 (611)
Q Consensus       111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~  190 (611)
                      .+|..+..  ++++|++++|          .+++..|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|+ 
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n----------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-   92 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFN----------VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-   92 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTC----------CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred             cCcCCCCC--cCcEEEccCC----------ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc-
Confidence            35554433  4555555555          5556678899999999999999999998899999999999999999999 


Q ss_pred             CcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc
Q 047139          191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL  270 (611)
Q Consensus       191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  270 (611)
                      +.+..|..++++++|++|++++|.+++..+..++.++      +|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             ccccChhhhcccccccEeeccccCcccCCcchhccCC------cccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence            6777889999999999999999999988788888777      9999999999999755455556999999999999999


Q ss_pred             ccCCCCccCcccCc--eEEecCCccccCCCcCCCCC--------------------------------------------
Q 047139          271 GSIPPSLGNLTFLE--ELYLTSNQMNGKFPESFGQL--------------------------------------------  304 (611)
Q Consensus       271 ~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l--------------------------------------------  304 (611)
                      +..|..++.+++|+  +|++++|.+++..|..+...                                            
T Consensus       167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~  246 (606)
T 3t6q_A          167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA  246 (606)
T ss_dssp             EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred             ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence            88888899999999  89999999998776655431                                            


Q ss_pred             -------CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhc
Q 047139          305 -------SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL  377 (611)
Q Consensus       305 -------~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  377 (611)
                             .+|+.|++++|.+.+..+ ..++++++|++|++++|...    .++..+..+++|++|++++|.+.+..|..+
T Consensus       247 ~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             GGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             HhchhhcCceeEEEeecCccCccCH-HHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCcCcCchhhh
Confidence                   157788888888876444 47899999999999996542    456667778899999999999998888899


Q ss_pred             cCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCccccccc--CcccccC-CCceEEccCCcccccCCCCCCCcce
Q 047139          378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI--PNTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTK  454 (611)
Q Consensus       378 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~  454 (611)
                      ..+++|++|++++|.+.+.+|......+++|++|++++|++.+..  +..+... .++.+++++|.+.+..|..+..+..
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            999999999999999988887765555689999999999998765  5555543 8999999999999888888777765


Q ss_pred             eecCcccCCCCeeecccccc-hhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc---Cccc
Q 047139          455 LYLRDLDISFNSINGSIPQS-VGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE---IPPS  530 (611)
Q Consensus       455 L~l~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~---~p~~  530 (611)
                      |  ++|++++|.+.+..+.. +..+++|++|++++|.+.        +..|..+..+++|++|++++|++++.   .+..
T Consensus       402 L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  471 (606)
T 3t6q_A          402 L--ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--------ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS  471 (606)
T ss_dssp             C--SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB--------TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred             C--CeEECCCCcCCCcccchhhhCcccCCEEECCCCccC--------CcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence            5  77888999999876654 889999999999988765        34566777899999999999999873   3367


Q ss_pred             ccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCC
Q 047139          531 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM  610 (611)
Q Consensus       531 l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l  610 (611)
                      +..+++|+.|++++|++++..|..+.. +++|++|++++|++++..|+.+.+++.| +|++++|++++.+|..++.+++|
T Consensus       472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L  549 (606)
T 3t6q_A          472 LQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ  549 (606)
T ss_dssp             GGGCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred             hccCCCccEEECCCCccCccChhhhcc-ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC
Confidence            899999999999999999877877775 9999999999999999999999999999 99999999999988888777665


Q ss_pred             C
Q 047139          611 T  611 (611)
Q Consensus       611 ~  611 (611)
                      +
T Consensus       550 ~  550 (606)
T 3t6q_A          550 R  550 (606)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-49  Score=439.64  Aligned_cols=478  Identities=19%  Similarity=0.140  Sum_probs=343.5

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCC--------------eEEccCCcCccCCC
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFK--------------VLDLSNNGFNSTLP  147 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~--------------~L~L~~n~l~~~~p  147 (611)
                      .+++.|++++              +.+.+..+..+.++++|++|++++|+++              +|++++|.+++..|
T Consensus        32 ~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p   97 (606)
T 3vq2_A           32 SSTKNIDLSF--------------NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP   97 (606)
T ss_dssp             TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred             CCcCEEECCC--------------CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence            4677888887              8888888889999999999999988553              55555555555555


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCc
Q 047139          148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS  227 (611)
Q Consensus       148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  227 (611)
                      ..|+++++|++|++++|.+++..|..++++++|++|++++|.+....+|..++++++|++|++++|.+++..+..++.+.
T Consensus        98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  177 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR  177 (606)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred             hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence            55666666666666666655444455566666666666666532234555566666666666666665555555544443


Q ss_pred             ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc-ccCCCCccCcccCceEEe------------------
Q 047139          228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL-GSIPPSLGNLTFLEELYL------------------  288 (611)
Q Consensus       228 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L------------------  288 (611)
                      .+..  .+++|++++|.+++..+..+... +|++|++++|.+. +..|..+.++++|+.+++                  
T Consensus       178 ~L~~--~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~  254 (606)
T 3vq2_A          178 ENPQ--VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI  254 (606)
T ss_dssp             HCTT--CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred             cccc--ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence            1100  13356666666554333333322 5666666665554 123333333443333333                  


Q ss_pred             ---------------cCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCC
Q 047139          289 ---------------TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDW  353 (611)
Q Consensus       289 ---------------~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  353 (611)
                                     ..+.+.+.+|. +..+++|+.|++++|.+.. ++  .+..+++|++|++++|..    ..++ .+
T Consensus       255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l----~~lp-~~  325 (606)
T 3vq2_A          255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL----KQFP-TL  325 (606)
T ss_dssp             GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC----SSCC-CC
T ss_pred             hhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC----cccc-cC
Confidence                           33444555555 7778889999999998865 44  578888999999998544    3334 34


Q ss_pred             CCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc--chhHHhcCCCCCEEEccCcccccccCccccc-CC
Q 047139          354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL--PSWFLQLNLTLDELDVGGNHLSGRIPNTLVF-RF  430 (611)
Q Consensus       354 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~  430 (611)
                       .+++|+.|++++|...+.+  .+..+++|++|++++|.+++..  |..+.. +++|++|++++|.+.+ +|..+.. ..
T Consensus       326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~  400 (606)
T 3vq2_A          326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEE  400 (606)
T ss_dssp             -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred             -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCC
Confidence             7789999999999655444  5678899999999999988763  666554 5799999999999885 4444443 48


Q ss_pred             CceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccc-cCccccc
Q 047139          431 PGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSG-EIPESIG  508 (611)
Q Consensus       431 l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g-~ip~~~~  508 (611)
                      ++.+++++|.+.+..| ..+..+..|  ++|++++|.+++..|..+..+++|++|++++|+++        + .+|..++
T Consensus       401 L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~  470 (606)
T 3vq2_A          401 LQHLDFQHSTLKRVTEFSAFLSLEKL--LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK--------DNTLSNVFA  470 (606)
T ss_dssp             CCEEECTTSEEESTTTTTTTTTCTTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--------GGEECSCCT
T ss_pred             CCeeECCCCccCCccChhhhhccccC--CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC--------CcchHHhhc
Confidence            9999999999998877 566666655  66777999999999999999999999999887654        4 3677888


Q ss_pred             CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCC-CCC
Q 047139          509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLS-ALH  587 (611)
Q Consensus       509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~  587 (611)
                      .+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+.. +++|++|++++|+++ .+|..+..++ +|+
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE-TSKGILQHFPKSLA  548 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence            8999999999999999988999999999999999999999888888776 999999999999999 6888888886 599


Q ss_pred             EeeccCCcCccCCCc
Q 047139          588 ILDLSHNNLLGPIPY  602 (611)
Q Consensus       588 ~L~ls~n~l~g~iP~  602 (611)
                      +|++++|++.+..|.
T Consensus       549 ~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          549 FFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECCSCCCCCSSTT
T ss_pred             EEEccCCCcccCCcc
Confidence            999999999887663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-48  Score=431.69  Aligned_cols=458  Identities=22%  Similarity=0.207  Sum_probs=334.6

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      .+++ .+|..+.  +++++|++++|++          ++..+..|.++++|++|++++|.+++..|.+|+++++|++|++
T Consensus        21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           21 QKLS-KVPDDIP--SSTKNIDLSFNPL----------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             SCCS-SCCTTSC--TTCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcc-cCCCCCC--CCcCEEECCCCCc----------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            4444 3454443  6677777766654          4455667777888888888888887777777888888888888


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEc
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLEL  264 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L  264 (611)
                      ++|. +.+..|..++++++|++|++++|.+++..+..++.++      +|++|++++|.+++ .+|..++++++|++|++
T Consensus        88 s~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L  160 (606)
T 3vq2_A           88 TGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL  160 (606)
T ss_dssp             TTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred             CCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence            8887 5566677788888888888888887777666677666      78888888888775 56777888888888888


Q ss_pred             cCCcccccCCCCccCcccCc----eEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhh---------------
Q 047139          265 WYNSFLGSIPPSLGNLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH---------------  325 (611)
Q Consensus       265 ~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---------------  325 (611)
                      ++|.+++..|..++.+++|+    +|++++|.+++..+..+.. .+|++|++++|.+.+......               
T Consensus       161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~  239 (606)
T 3vq2_A          161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG  239 (606)
T ss_dssp             CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             cCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence            88887777777777666654    6788888777554444443 377777777776653222223               


Q ss_pred             -----------------------------------------hcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEe
Q 047139          326 -----------------------------------------LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI  364 (611)
Q Consensus       326 -----------------------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  364 (611)
                                                               +..+++|+.|+++++....    ++ .+..+++|+.|++
T Consensus       240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----l~-~l~~~~~L~~L~l  314 (606)
T 3vq2_A          240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY----LE-DVPKHFKWQSLSI  314 (606)
T ss_dssp             CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC----CC-CCCTTCCCSEEEE
T ss_pred             ccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh----hh-hccccccCCEEEc
Confidence                                                     3445555666665533321    12 4445567777777


Q ss_pred             cccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccc--cCcccccC-CCceEEccCCcc
Q 047139          365 RYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR--IPNTLVFR-FPGSVDLSSNRF  441 (611)
Q Consensus       365 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~-~l~~l~ls~n~~  441 (611)
                      ++|.+ +.+|.+  .+++|++|++++|...+..+.  . .+++|++|++++|++++.  +|..+... .++.+++++|.+
T Consensus       315 ~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          315 IRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFKK--V-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA  388 (606)
T ss_dssp             ESCCC-SSCCCC--CCSSCCEEEEESCSSCEECCC--C-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred             ccccC-cccccC--CCCccceeeccCCcCccchhh--c-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence            77777 566633  777777777777755444321  1 346788888888887765  25554433 788888888887


Q ss_pred             cccCCCCCCCcceeecCcccCCCCeeecccc-cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC
Q 047139          442 EGPIPLWSSNLTKLYLRDLDISFNSINGSIP-QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN  520 (611)
Q Consensus       442 ~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~  520 (611)
                      ++ +|..+..+..|  ++|++++|.+.+..| ..+..+++|++|++++|++        .+.+|..++.+++|++|++++
T Consensus       389 ~~-~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          389 II-MSANFMGLEEL--QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT--------KIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             EE-ECCCCTTCTTC--CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC--------EECCTTTTTTCTTCCEEECTT
T ss_pred             cc-chhhccCCCCC--CeeECCCCccCCccChhhhhccccCCEEECcCCCC--------CccchhhhcCCCCCCEEECCC
Confidence            75 44555555554  667778888887777 6788888888888887765        446677788899999999999


Q ss_pred             Ccccc-cCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccC
Q 047139          521 NHLSG-EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGP  599 (611)
Q Consensus       521 n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~  599 (611)
                      |++++ .+|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++.+|..+..+++|++|++++|+++ .
T Consensus       458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~  535 (606)
T 3vq2_A          458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT-LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-T  535 (606)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-C
T ss_pred             CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-c
Confidence            99998 47889999999999999999999877877765 999999999999999999999999999999999999998 7


Q ss_pred             CCccccccC
Q 047139          600 IPYCVGDFS  608 (611)
Q Consensus       600 iP~~~~~~~  608 (611)
                      +|..+..++
T Consensus       536 ~p~~~~~l~  544 (606)
T 3vq2_A          536 SKGILQHFP  544 (606)
T ss_dssp             EESCGGGSC
T ss_pred             cCHhHhhhc
Confidence            888787765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-48  Score=440.29  Aligned_cols=488  Identities=21%  Similarity=0.246  Sum_probs=316.7

Q ss_pred             CCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCC---------------CCCe
Q 047139           70 CSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLN---------------NFKV  134 (611)
Q Consensus        70 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n---------------~l~~  134 (611)
                      |.|.+|-+  ...+++.|++++              +.+++..+..+.++++|++|++++|               ++++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~--------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF--------------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES--------------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred             CCCCCCCC--CCCCcCEEECCC--------------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence            45666665  456888888888              8899888999999999999999988               2457


Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCcc--CCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccc
Q 047139          135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG--FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL  212 (611)
Q Consensus       135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~  212 (611)
                      |+|++|.+++..|..|.++++|++|++++|.+++.+|..  ++++++|++|++++|.+.....+..++++++|++|++++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            888888888777888888888888888888887766654  788888888888888743322335678888888888888


Q ss_pred             ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCC------CcEEEccCCcccccCCCCccC-------
Q 047139          213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN------LRYLELWYNSFLGSIPPSLGN-------  279 (611)
Q Consensus       213 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~-------  279 (611)
                      |.+++..+..+..+..    ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++..|..+..       
T Consensus       158 N~i~~~~~~~l~~l~~----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQG----KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             SCCCCCCSGGGHHHHH----CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             CcCCeeCHHHcccccC----CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            8888777777766510    17888888888888777777666655      888888888776655544332       


Q ss_pred             -------------------------------cccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcC
Q 047139          280 -------------------------------LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRN  328 (611)
Q Consensus       280 -------------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~  328 (611)
                                                     .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+.+
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~  312 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYG  312 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTT
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcC
Confidence                                           14566666666666655566666666666666666666654443 5666


Q ss_pred             CCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCC
Q 047139          329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTL  408 (611)
Q Consensus       329 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L  408 (611)
                      +++|++|++++|.   +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. +.     .++|
T Consensus       313 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~-----~~~L  383 (844)
T 3j0a_A          313 LDNLQVLNLSYNL---LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF-----IPSI  383 (844)
T ss_dssp             CSSCCEEEEESCC---CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS-----CCSC
T ss_pred             CCCCCEEECCCCC---CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC-----CCCc
Confidence            6666666666632   2233334445555666666666666555555566666666666666666532 21     3556


Q ss_pred             CEEEccCcccccccCcccccCCCceEEccCCcccccCCC-CCCCcceeecCcccCCCCeeeccccc-chhccCCCCeEEC
Q 047139          409 DELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPL-WSSNLTKLYLRDLDISFNSINGSIPQ-SVGNLKQLLTLVI  486 (611)
Q Consensus       409 ~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~-~~~~l~~L~l~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L  486 (611)
                      +.+++++|+++ .+|..  ...++.+++++|++++.... .+..+..|  ++|++++|++++..+. .+..+++|++|++
T Consensus       384 ~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          384 PDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDILYFLLRVPHL--QILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             SEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTC--CEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             chhccCCCCcc-ccccc--ccccceeecccCccccCchhhhhhcCCcc--ceeeCCCCcccccccccccccCCccccccC
Confidence            66666666665 33332  22456666666666543111 11122222  3344466666643332 2344566667776


Q ss_pred             cCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEE
Q 047139          487 SNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILR  566 (611)
Q Consensus       487 ~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~  566 (611)
                      ++|.++.+..   .+..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++ +|...+  .++|+.|+
T Consensus       459 s~N~l~~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--~~~L~~L~  532 (844)
T 3j0a_A          459 GENMLQLAWE---TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDL--PANLEILD  532 (844)
T ss_dssp             ESCCCSSSCC---SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCC--CSCCCEEE
T ss_pred             CCCccccccc---cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhh--hccccEEE
Confidence            6666553221   12334455667777777777777777767777777777777777777774 333322  26777777


Q ss_pred             CcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139          567 LRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       567 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP  601 (611)
                      +++|++++.+|..+   .+|+.|++++|++....+
T Consensus       533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             CCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            77777777776554   367777777777766544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.9e-47  Score=415.25  Aligned_cols=479  Identities=21%  Similarity=0.221  Sum_probs=381.1

Q ss_pred             CCCcccEEecCCC-----------CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEc
Q 047139           69 CCSWRGVGCNNRT-----------GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDL  137 (611)
Q Consensus        69 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L  137 (611)
                      .|.|.|+ |+...           .+++.|++++              +.+++..|..+..+++|++|++++|+++    
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----   63 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------NKITYIGHGDLRACANLQVLILKSSRIN----   63 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------SCCCEECSSTTSSCTTCCEEECTTSCCC----
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcC--------------CccCccChhhhhcCCcccEEECCCCCcC----
Confidence            4889888 86432           2566666666              8888888888999999998888877664    


Q ss_pred             cCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC
Q 047139          138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG  217 (611)
Q Consensus       138 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  217 (611)
                            +..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.....|..++++++|++|++++|.+.+
T Consensus        64 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  137 (549)
T 2z81_A           64 ------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS  137 (549)
T ss_dssp             ------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             ------ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence                  55677899999999999999999988787899999999999999995333567889999999999999998544


Q ss_pred             cc-chhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCcccc
Q 047139          218 EV-SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNG  295 (611)
Q Consensus       218 ~~-~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~  295 (611)
                      .+ +..+..++      +|++|++++|.+++..|..+..+++|++|++++|.+. .+|.+ +..+++|++|++++|.+++
T Consensus       138 ~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          138 EIRRIDFAGLT------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EECTTTTTTCC------EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ccCHhhhhccc------ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            44 46777777      9999999999999999999999999999999999876 44444 3568999999999999987


Q ss_pred             CC--C-cCCCCCCCCCEEEccCCccccccChh---hhcCCCCCCEEEcCccCCCCceee---ccCCCCCCcceeEEEecc
Q 047139          296 KF--P-ESFGQLSAIRVLELSDNQWEGFITDA---HLRNLTSLEELSLIKTSNSSLSFN---ISFDWIPPFKLRYLVIRY  366 (611)
Q Consensus       296 ~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~  366 (611)
                      ..  | .....+++|+.|++++|.+.+..+..   .+..+++|+.+++++|........   .........+++.+.+.+
T Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  290 (549)
T 2z81_A          211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR  290 (549)
T ss_dssp             CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred             ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence            42  2 22346789999999999988754432   346788999999998644222111   112234567899999988


Q ss_pred             cccCcc-----cchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcc---cc-cCCCceEEcc
Q 047139          367 YQLGPK-----FPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT---LV-FRFPGSVDLS  437 (611)
Q Consensus       367 ~~l~~~-----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~-~~~l~~l~ls  437 (611)
                      +.+...     ++..+...++|++|++++|++. .+|..++..+++|++|++++|++++.+|..   +. ...++.|+++
T Consensus       291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls  369 (549)
T 2z81_A          291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS  369 (549)
T ss_dssp             CBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred             cccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence            876532     2333455689999999999986 788888766789999999999999876532   33 2489999999


Q ss_pred             CCcccccCC--CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCE
Q 047139          438 SNRFEGPIP--LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF  515 (611)
Q Consensus       438 ~n~~~~~~p--~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~  515 (611)
                      +|++++..+  ..+..+..|  ++|++++|+++ .+|..+..+++|++|++++|+++.+.     +.+|      ++|++
T Consensus       370 ~N~l~~~~~~~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-----~~~~------~~L~~  435 (549)
T 2z81_A          370 QNHLRSMQKTGEILLTLKNL--TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-----TCIP------QTLEV  435 (549)
T ss_dssp             TSCCCCHHHHHHHGGGCTTC--CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-----TTSC------TTCSE
T ss_pred             CCcccccccchhhhhcCCCC--CEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-----chhc------CCceE
Confidence            999976432  223344433  55666999998 68888999999999999999987433     2232      48999


Q ss_pred             EECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139          516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN  595 (611)
Q Consensus       516 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  595 (611)
                      |++++|++++.+    ..+++|++|++++|+++ .+|.. . .+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus       436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            999999999653    57899999999999999 78874 3 39999999999999999888889999999999999999


Q ss_pred             CccCCC
Q 047139          596 LLGPIP  601 (611)
Q Consensus       596 l~g~iP  601 (611)
                      +.+.+|
T Consensus       509 ~~~~~~  514 (549)
T 2z81_A          509 WDCSCP  514 (549)
T ss_dssp             BCCCHH
T ss_pred             ccCCCc
Confidence            999888

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=411.09  Aligned_cols=424  Identities=23%  Similarity=0.229  Sum_probs=268.0

Q ss_pred             CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139          147 PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL  226 (611)
Q Consensus       147 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  226 (611)
                      +..|.++++|++|++++|++++..|..|+++++|++|++++|+ +.+..|..|+++++|++|++++|.+++..+..++.+
T Consensus        45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccc
Confidence            3344444444445554444444444444444444555544444 233333444444444445444444444333333333


Q ss_pred             cccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcccC----ceEEecCCccccCCCcCC
Q 047139          227 SECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL----EELYLTSNQMNGKFPESF  301 (611)
Q Consensus       227 ~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~l  301 (611)
                      +      +|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++|    +++++++|.+.+..|..+
T Consensus       124 ~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~  197 (570)
T 2z63_A          124 K------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  197 (570)
T ss_dssp             T------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             c------cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence            3      44444444444443 234444444444445444444444444444444444    444444444444433333


Q ss_pred             CCCCCCCEEEccCC----------------------------------------------------------ccccccCh
Q 047139          302 GQLSAIRVLELSDN----------------------------------------------------------QWEGFITD  323 (611)
Q Consensus       302 ~~l~~L~~L~L~~n----------------------------------------------------------~l~~~~~~  323 (611)
                      ... +|+.|++++|                                                          .+.+..+.
T Consensus       198 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  276 (570)
T 2z63_A          198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID  276 (570)
T ss_dssp             TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred             ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence            332 3444444443                                                          33333333


Q ss_pred             hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHh
Q 047139          324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ  403 (611)
Q Consensus       324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  403 (611)
                       .+..+++|++|++++|...    .++...... +|+.|++++|.+. .+|.  ..+++|++|++++|.+.+..+.   .
T Consensus       277 -~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~  344 (570)
T 2z63_A          277 -LFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---V  344 (570)
T ss_dssp             -TTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---C
T ss_pred             -hhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---c
Confidence             5666777777777774332    334444445 7777777777766 4444  3667778888888877766655   3


Q ss_pred             cCCCCCEEEccCccccccc--Cccccc-CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccc-cchhccC
Q 047139          404 LNLTLDELDVGGNHLSGRI--PNTLVF-RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP-QSVGNLK  479 (611)
Q Consensus       404 ~~~~L~~L~ls~n~l~~~~--~~~~~~-~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~-~~l~~l~  479 (611)
                      .+++|++|++++|++++..  +..+.. ..++.+++++|.+++..+. +..+..|  ++|++++|.+.+..| ..+.+++
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL--EHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC--CEEECTTSEEESCTTSCTTTTCT
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC--CEEEccCCccccccchhhhhcCC
Confidence            4577888888888877543  333333 3788888888887765443 4444433  566668888887665 4678888


Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCEEECCCCcCcccChhHHhhc
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGES  558 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~  558 (611)
                      +|++|++++|++.        +.+|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+.. 
T Consensus       422 ~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-  492 (570)
T 2z63_A          422 NLIYLDISHTHTR--------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-  492 (570)
T ss_dssp             TCCEEECTTSCCE--------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-
T ss_pred             CCCEEeCcCCccc--------ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-
Confidence            8888888877654        456677778999999999999997 578899999999999999999999877887775 


Q ss_pred             CCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139          559 MPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY  602 (611)
Q Consensus       559 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~  602 (611)
                      +++|++|++++|++++..|..+.++++|++|++++|++++.+|.
T Consensus       493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999988888889999999999999999999885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=396.54  Aligned_cols=442  Identities=21%  Similarity=0.240  Sum_probs=329.8

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL  161 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  161 (611)
                      .+++.|++++              +.+++..+.++..+++|++|++++|+++          +..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----------~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A           28 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             SSCCEEECCS--------------CCCCEECTTTTTTCSSCCEEECTTCCCC----------EECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccC--------------CccCccChhHhhCCCCceEEECCCCcCC----------ccCcccccCchhCCEEeC
Confidence            4677888887              7888888889999999999999888654          233445556666666666


Q ss_pred             cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEc
Q 047139          162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLEL  240 (611)
Q Consensus       162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L  240 (611)
                      ++|.+++..|..|+++++|++|++++|. +.+..+..++++++|++|++++|.+++ .+|..++.++      +|++|++
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L~l  156 (570)
T 2z63_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDL  156 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEEC
T ss_pred             cCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEEeC
Confidence            6666655555556666666666666665 333222345566666666666666555 2455555555      6666666


Q ss_pred             cCCCCCccCCcccCCCCCC----cEEEccCCcccccCCCCccCcccCceEEecCC-------------------------
Q 047139          241 GYNQLTGNLPISLGYLKNL----RYLELWYNSFLGSIPPSLGNLTFLEELYLTSN-------------------------  291 (611)
Q Consensus       241 s~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-------------------------  291 (611)
                      ++|++++..+..++.+++|    +++++++|.+.+..|..+... +|++|++++|                         
T Consensus       157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  235 (570)
T 2z63_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  235 (570)
T ss_dssp             TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred             cCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence            6666665555555555555    556666666655544444333 4555555444                         


Q ss_pred             ---------------------------------ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcC
Q 047139          292 ---------------------------------QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI  338 (611)
Q Consensus       292 ---------------------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  338 (611)
                                                       .+.+..|..+..+++|++|++++|.+.+ +|. .+..+ +|++|+++
T Consensus       236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~  312 (570)
T 2z63_A          236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELV  312 (570)
T ss_dssp             ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEE
T ss_pred             cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeec
Confidence                                             5556677788889999999999999875 665 56777 99999999


Q ss_pred             ccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc--chhHHhcCCCCCEEEccCc
Q 047139          339 KTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL--PSWFLQLNLTLDELDVGGN  416 (611)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~ls~n  416 (611)
                      +|...    .++.  ..+++|+.|++.+|.+.+..+.  ..+++|++|++++|.+++..  |..+.. +++|++|++++|
T Consensus       313 ~n~~~----~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n  383 (570)
T 2z63_A          313 NCKFG----QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFN  383 (570)
T ss_dssp             SCBCS----SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSC
T ss_pred             cCccc----ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCC
Confidence            96553    2222  3567999999999998877665  78899999999999998664  666665 589999999999


Q ss_pred             ccccccCcccc-cCCCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCC
Q 047139          417 HLSGRIPNTLV-FRFPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDM  494 (611)
Q Consensus       417 ~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l  494 (611)
                      .+.+..+. +. ...++.+++++|.+.+..| ..+..++.|  ++|++++|.+.+..|..+..+++|++|++++|++.  
T Consensus       384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--  458 (570)
T 2z63_A          384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--  458 (570)
T ss_dssp             SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--
T ss_pred             cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC--CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc--
Confidence            99876555 44 3489999999999998766 345666655  66777999999999999999999999999988653  


Q ss_pred             CCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139          495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG  574 (611)
Q Consensus       495 ~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~  574 (611)
                           .+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++
T Consensus       459 -----~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          459 -----ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             -----GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCC
T ss_pred             -----cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc-ccCCcEEEecCCcccC
Confidence                 1468888999999999999999999988999999999999999999999766655554 9999999999999998


Q ss_pred             cCCc
Q 047139          575 TIPS  578 (611)
Q Consensus       575 ~~p~  578 (611)
                      ..|.
T Consensus       533 ~~~~  536 (570)
T 2z63_A          533 SCPR  536 (570)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            8774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=401.71  Aligned_cols=447  Identities=20%  Similarity=0.232  Sum_probs=367.4

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      ++++ .+|..+.  ++|++|++++|++          ++..|..|.++++|++|++++|++++..|..|+++++|++|++
T Consensus        10 n~l~-~ip~~~~--~~L~~L~Ls~n~i----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B           10 NGLI-HVPKDLS--QKTTILNISQNYI----------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             SCCS-SCCCSCC--TTCSEEECCSSCC----------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             CCcc-ccccccc--ccccEEECCCCcc----------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            6777 4676665  6777777666654          5566678999999999999999999888999999999999999


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCC--cEE
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL--RYL  262 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L  262 (611)
                      ++|++ + .+|..  .+++|++|++++|.+++ .+|..++.++      +|++|++++|.+++   ..+..+++|  ++|
T Consensus        77 s~N~l-~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~---~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           77 SHNKL-V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK---SSVLPIAHLNISKV  143 (520)
T ss_dssp             CSSCC-C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred             CCCce-e-ecCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch---hhccccccceeeEE
Confidence            99995 4 57766  89999999999999998 5788999888      99999999999986   456667777  999


Q ss_pred             EccCCcc--cccCCCCccCcc-cCceEEecCCccccCCCc-CCCCCCCCCEEEccCCc-------cccccChhhhcCCCC
Q 047139          263 ELWYNSF--LGSIPPSLGNLT-FLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQ-------WEGFITDAHLRNLTS  331 (611)
Q Consensus       263 ~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~~l~~l~~  331 (611)
                      ++++|.+  .+..|..+..++ +...+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++  .+..+++
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~  221 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPK  221 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTT
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccc
Confidence            9999999  788888887765 344678888888776654 56789999999999997       666554  5889999


Q ss_pred             CCEEEcCccCCCCceeeccCC---CCCCcceeEEEecccccCcccchhc-----cCCCCCCEEEccCcccccccc-hhHH
Q 047139          332 LEELSLIKTSNSSLSFNISFD---WIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLVLNSASISDTLP-SWFL  402 (611)
Q Consensus       332 L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~p-~~~~  402 (611)
                      |+.|+++++..   .+.....   .....+|+.|++++|.+.+.+|.++     ..+++|+.+++++|.+  .+| .++.
T Consensus       222 L~~L~l~~~~l---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~  296 (520)
T 2z7x_B          222 LSNLTLNNIET---TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY  296 (520)
T ss_dssp             CCEEEEEEEEE---EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred             hhhcccccccc---CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence            99999988432   2211111   1113489999999999999999998     8999999999999999  666 4554


Q ss_pred             hcC--CCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec--ccccchhcc
Q 047139          403 QLN--LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING--SIPQSVGNL  478 (611)
Q Consensus       403 ~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~--~~~~~l~~l  478 (611)
                      ...  .+|+.|++++|++.+.. .......++.+++++|++++.+|..+..+..|  ++|++++|++++  .+|..+..+
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~N~l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL--ETLILQMNQLKELSKIAEMTTQM  373 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC--CEEECCSSCCCBHHHHHHHHTTC
T ss_pred             cccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCC--CEEEccCCccCccccchHHHhhC
Confidence            432  47999999999987432 11223479999999999999899888777765  778889999997  667889999


Q ss_pred             CCCCeEECcCCCCCCCCCCcccccCccc-ccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139          479 KQLLTLVISNNNLSDMTNNNFSGEIPES-IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE  557 (611)
Q Consensus       479 ~~L~~L~L~~n~i~~l~~n~~~g~ip~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  557 (611)
                      ++|++|++++|+++.        .+|.. +..+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+|.+++.
T Consensus       374 ~~L~~L~Ls~N~l~~--------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          374 KSLQQLDISQNSVSY--------DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             TTCCEEECCSSCCBC--------CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             CCCCEEECCCCcCCc--------ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence            999999999988763        35543 56689999999999999988887765  79999999999999 89998885


Q ss_pred             cCCCCcEEECcCCcCcccCCcc-ccCCCCCCEeeccCCcCccCCC
Q 047139          558 SMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       558 ~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~g~iP  601 (611)
                       +++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus       443 -l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          443 -LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             -CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence             999999999999999 57765 8899999999999999998765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-44  Score=413.37  Aligned_cols=447  Identities=23%  Similarity=0.230  Sum_probs=348.3

Q ss_pred             CCCeEEccCCcCccCC-CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc--CCCCCCCCE
Q 047139          131 NFKVLDLSNNGFNSTL-PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN--LGTLCNLQT  207 (611)
Q Consensus       131 ~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~--l~~l~~L~~  207 (611)
                      ++++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|++++|. +.+.+|..  ++++++|++
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCE
Confidence            6789999999776666 6788999999999999999988888899999999999999998 56555554  888999999


Q ss_pred             EEcccccCCCccc-hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC--CCCcEEEccCCcccccCCCCccCccc--
Q 047139          208 LKLSLNQFSGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL--KNLRYLELWYNSFLGSIPPSLGNLTF--  282 (611)
Q Consensus       208 L~l~~n~l~~~~~-~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~--  282 (611)
                      |++++|.+++..+ ..++.++      +|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..|..++.+++  
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~------~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLN------SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCS------SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             EECCCCcccccccchhHhhCC------CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            9999999887755 5677777      89999999999988888888776  88999999999998888877776665  


Q ss_pred             ----CceEEecCCccccCCCcCCC------------------------------------C--CCCCCEEEccCCccccc
Q 047139          283 ----LEELYLTSNQMNGKFPESFG------------------------------------Q--LSAIRVLELSDNQWEGF  320 (611)
Q Consensus       283 ----L~~L~L~~n~l~~~~~~~l~------------------------------------~--l~~L~~L~L~~n~l~~~  320 (611)
                          |++|++++|.+++..+..+.                                    .  .++|+.|++++|.+.+.
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                89999999877665543322                                    1  26789999999988876


Q ss_pred             cChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchh
Q 047139          321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSW  400 (611)
Q Consensus       321 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~  400 (611)
                      .+. .+..+++|+.|++++|   .+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus       282 ~~~-~~~~l~~L~~L~L~~n---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          282 NSR-VFETLKDLKVLNLAYN---KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CSC-CSSSCCCCCEEEEESC---CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             Chh-hhhcCCCCCEEECCCC---cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence            554 7888999999999984   444555566777889999999999988888888999999999999999887665554


Q ss_pred             HHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccc-ccchhccC
Q 047139          401 FLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI-PQSVGNLK  479 (611)
Q Consensus       401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~-~~~l~~l~  479 (611)
                      +.. +++|++|++++|.+++ ++.   ...++.+++++|+++ .+|.....++.+     ++++|.+++.. +..+.+++
T Consensus       358 ~~~-l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L-----~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          358 FKF-LEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNKLV-TLPKINLTANLI-----HLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             SCS-CCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCCCC-CCCCCCTTCCEE-----ECCSCCCCSSTTHHHHTTCT
T ss_pred             hcC-CCCCCEEECCCCCCCc-ccC---CCCcchhccCCCCcc-ccccccccccee-----ecccCccccCchhhhhhcCC
Confidence            443 5789999999998874 222   346888999999888 456554444444     44888887642 23356888


Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-----ccCcccccCCCCCCEEECCCCcCcccChhH
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-----GEIPPSLKNCSLMDSLDLGENQLSGNIPAW  554 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  554 (611)
                      +|++|++++|+++.+...       ..+..+++|+.|++++|.++     +..+..|..+++|+.|+|++|++++..|..
T Consensus       427 ~L~~L~Ls~N~l~~~~~~-------~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  499 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGD-------QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV  499 (844)
T ss_dssp             TCCEEEEESCCCCCCCSS-------SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred             ccceeeCCCCcccccccc-------cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence            999999999887644321       12233678999999999886     344567888899999999999998655555


Q ss_pred             HhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCC
Q 047139          555 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSA  609 (611)
Q Consensus       555 l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~  609 (611)
                      +. .+++|++|+|++|++++..|..+.  ++|++|++++|++++.+|..|.++..
T Consensus       500 ~~-~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~  551 (844)
T 3j0a_A          500 FS-HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV  551 (844)
T ss_dssp             SS-SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred             cc-chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence            54 489999999999999976666654  78999999999999999888776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-46  Score=415.50  Aligned_cols=431  Identities=19%  Similarity=0.271  Sum_probs=333.5

Q ss_pred             CCCeEEccCCcCccCCCccccCCCCCCEEEccCCCC------CC------CCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139          131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL------QG------DIPDGFSSLNSLQLLDLSGNSFLEGQLSRN  198 (611)
Q Consensus       131 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (611)
                      .++.|+|+++.+.|.+|..++++++|++|+|++|.+      .+      .+|...  +.+|+ ++++++. ..+.+|..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~-l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTF-VDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHH-TCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhh-hccCchhh
Confidence            455667777778899999999999999999999976      22      333333  45667 7777776 56677766


Q ss_pred             CCCC---------C----------CCCEEEcc--cccCCCccchhhhcCcccCCCCCCcEEEccCCCCCcc---------
Q 047139          199 LGTL---------C----------NLQTLKLS--LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN---------  248 (611)
Q Consensus       199 l~~l---------~----------~L~~L~l~--~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~---------  248 (611)
                      +..+         .          .++.+.+.  .|.+++ +|..++.++      +|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT------KLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhccc------CCCEEECcCCcccccccccccccc
Confidence            6521         1          11112221  567777 788888887      899999999999875         


Q ss_pred             --------CCcccC--CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc-ccc-CCCcCCCCC------CCCCEE
Q 047139          249 --------LPISLG--YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ-MNG-KFPESFGQL------SAIRVL  310 (611)
Q Consensus       249 --------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L  310 (611)
                              +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    888888  89999999999999888999889999999999999998 887 788877765      889999


Q ss_pred             EccCCccccccCh-hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCC-CCEEEc
Q 047139          311 ELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLVL  388 (611)
Q Consensus       311 ~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l  388 (611)
                      ++++|.++ .+|. ..++++++|++|++++|   .+.+.++ .+..+++|+.|++++|.+. .+|.++..+++ |++|++
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N---~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYN---QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSC---CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCC---cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence            99999988 5664 36888999999999884   5566666 7777888999999999888 78888888888 999999


Q ss_pred             cCcccccccchhHHhc-CCCCCEEEccCcccccccCcccc-------cC-CCceEEccCCcccccCCCC-CCCcceeecC
Q 047139          389 NSASISDTLPSWFLQL-NLTLDELDVGGNHLSGRIPNTLV-------FR-FPGSVDLSSNRFEGPIPLW-SSNLTKLYLR  458 (611)
Q Consensus       389 ~~n~l~~~~p~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~-------~~-~l~~l~ls~n~~~~~~p~~-~~~l~~L~l~  458 (611)
                      ++|.++ .+|..+... .++|++|++++|++.+.+|..+.       .. .++.|++++|.++ .+|.. +..++.|  +
T Consensus       385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L--~  460 (636)
T 4eco_A          385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL--S  460 (636)
T ss_dssp             CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC--S
T ss_pred             cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC--C
Confidence            999988 777755432 24788999999999888877665       22 6888899999888 44443 2233333  5


Q ss_pred             cccCCCCeeecccccchhc--------cCCCCeEECcCCCCCCCCCCcccccCccccc--CcCCCCEEECcCCcccccCc
Q 047139          459 DLDISFNSINGSIPQSVGN--------LKQLLTLVISNNNLSDMTNNNFSGEIPESIG--SLLTIRFLVLSNNHLSGEIP  528 (611)
Q Consensus       459 ~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p  528 (611)
                      +|++++|.++ .+|..+..        +++|++|++++|+++         .+|..+.  .+++|++|+|++|++++ +|
T Consensus       461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip  529 (636)
T 4eco_A          461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFSK-FP  529 (636)
T ss_dssp             EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence            5666888888 55544332        238889988888765         5677776  78899999999999986 88


Q ss_pred             ccccCCCCCCEEEC------CCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139          529 PSLKNCSLMDSLDL------GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       529 ~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      ..+.++++|+.|++      ++|++.+.+|..+.. +++|++|++++|++ +.+|..+.  ++|++||+++|++.
T Consensus       530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             hhhhcCCCCCEEECCCCcccccCcccccChHHHhc-CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            88888999999998      567788888888876 89999999999999 57888765  78999999999664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.6e-44  Score=390.79  Aligned_cols=456  Identities=22%  Similarity=0.225  Sum_probs=350.2

Q ss_pred             eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 047139          111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF  190 (611)
Q Consensus       111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~  190 (611)
                      .+|..+.  ++|++|++++|          .+++..|..+.++++|++|++++|++++..|.+|+++++|++|++++|+ 
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-   85 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFN----------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-   85 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSS----------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred             cccccCC--CCccEEECcCC----------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-
Confidence            3454443  55666555555          4455667788999999999999999998888889999999999999998 


Q ss_pred             CcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCc
Q 047139          191 LEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNS  268 (611)
Q Consensus       191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~  268 (611)
                      +.+..+..++++++|++|++++|.+++. .|..++.++      +|++|++++|.+.+.+| ..+.++++|++|++++|.
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC------CccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            5666666789999999999999998863 566677776      89999999998544554 678889999999999999


Q ss_pred             ccccCCCCccCcccCceEEecCCccccCCCcC-CCCCCCCCEEEccCCcccccc--ChhhhcCCCCCCEEEcCccCCCCc
Q 047139          269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPES-FGQLSAIRVLELSDNQWEGFI--TDAHLRNLTSLEELSLIKTSNSSL  345 (611)
Q Consensus       269 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~~~~~~~  345 (611)
                      +++..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++.+..  +......+++|+.|++++|.   +
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~---l  235 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV---L  235 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE---E
T ss_pred             ccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc---c
Confidence            998888889999999999999888753 3433 346788999999999887742  22234567889999998843   2


Q ss_pred             eeec----cCCCCCCcceeEEEecccccCcc------cchhccCCCCCCEEEccCccccccc----chhHHhcCCCCCEE
Q 047139          346 SFNI----SFDWIPPFKLRYLVIRYYQLGPK------FPTWLRNQTELTTLVLNSASISDTL----PSWFLQLNLTLDEL  411 (611)
Q Consensus       346 ~~~~----~~~~~~~~~L~~L~l~~~~l~~~------~~~~l~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~~L~~L  411 (611)
                      .+..    ........+++.+++++|.+.+.      ....+..+++++.|++.++.+....    ...+....++|+.+
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L  315 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI  315 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence            2221    12234456889999998877652      1233567788999999888765421    11223445799999


Q ss_pred             EccCcccccccCcccc--cCCCceEEccCCcccccCC---CCCCCcceeecCcccCCCCeeecccc--cchhccCCCCeE
Q 047139          412 DVGGNHLSGRIPNTLV--FRFPGSVDLSSNRFEGPIP---LWSSNLTKLYLRDLDISFNSINGSIP--QSVGNLKQLLTL  484 (611)
Q Consensus       412 ~ls~n~l~~~~~~~~~--~~~l~~l~ls~n~~~~~~p---~~~~~l~~L~l~~L~Ls~n~l~~~~~--~~l~~l~~L~~L  484 (611)
                      ++++|++. .+|..+.  ...++.+++++|++++.+|   ..+..+..|  ++|++++|++++..+  ..+..+++|++|
T Consensus       316 ~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL--QTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             EEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC--CEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             EeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC--cEEEccCCcccccccchhhhhcCCCCCEE
Confidence            99999987 7777663  4589999999999998764   234444444  566779999986543  568899999999


Q ss_pred             ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139          485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI  564 (611)
Q Consensus       485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~  564 (611)
                      ++++|+++         .+|..+..+++|++|++++|+++ .+|..+  .++|++|++++|++++.+     ..+++|++
T Consensus       393 ~Ls~N~l~---------~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-----~~l~~L~~  455 (549)
T 2z81_A          393 DISRNTFH---------PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-----LFLPRLQE  455 (549)
T ss_dssp             ECTTCCCC---------CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-----CCCTTCCE
T ss_pred             ECCCCCCc---------cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-----ccCChhcE
Confidence            99999876         57778888999999999999998 455444  268999999999999643     24899999


Q ss_pred             EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139          565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT  611 (611)
Q Consensus       565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~  611 (611)
                      |++++|+++ .+|. ...+++|++|++++|++++.+|..++++++|+
T Consensus       456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            999999999 7886 46789999999999999999998888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-45  Score=396.15  Aligned_cols=443  Identities=20%  Similarity=0.235  Sum_probs=363.4

Q ss_pred             eEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccc
Q 047139          134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN  213 (611)
Q Consensus       134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n  213 (611)
                      ++|+++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|+ +.+..|..++++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC
Confidence            4666666666 5777665  899999999999998888899999999999999999 67777899999999999999999


Q ss_pred             cCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcccC--ceEEecC
Q 047139          214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL--EELYLTS  290 (611)
Q Consensus       214 ~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~  290 (611)
                      .++. +|..  .++      +|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++
T Consensus        80 ~l~~-lp~~--~l~------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           80 KLVK-ISCH--PTV------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             CCCE-EECC--CCC------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             ceee-cCcc--ccC------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            9984 4544  455      99999999999997 578999999999999999999986   357778888  9999999


Q ss_pred             Ccc--ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcCCCCCCEEEcCccC----CCCceeeccCCCCCCcceeEEE
Q 047139          291 NQM--NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS----NSSLSFNISFDWIPPFKLRYLV  363 (611)
Q Consensus       291 n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~  363 (611)
                      |.+  .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.    ...+.+..+ .+..+++|+.|+
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~  226 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT  226 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence            999  788888887765 345678889999888888788999999999999853    111333333 566778999999


Q ss_pred             ecccccCcccchhcc---CCCCCCEEEccCcccccccchhHH----hcCCCCCEEEccCcccccccCc-ccc----cCCC
Q 047139          364 IRYYQLGPKFPTWLR---NQTELTTLVLNSASISDTLPSWFL----QLNLTLDELDVGGNHLSGRIPN-TLV----FRFP  431 (611)
Q Consensus       364 l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~p~~~~----~~~~~L~~L~ls~n~l~~~~~~-~~~----~~~l  431 (611)
                      ++++.+.+..+..+.   ..++|++|++++|+++|.+|.+++    ..+++|+.+++++|.+  .+|. .+.    ...+
T Consensus       227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L  304 (520)
T 2z7x_B          227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI  304 (520)
T ss_dssp             EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred             ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence            999988764333221   246999999999999999998773    3357899999999998  5662 222    2369


Q ss_pred             ceEEccCCcccccC-CCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139          432 GSVDLSSNRFEGPI-PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL  510 (611)
Q Consensus       432 ~~l~ls~n~~~~~~-p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l  510 (611)
                      +.+++++|.+.+.. +..+.++     ++|++++|.+++.+|..++.+++|++|++++|+++.++      .+|..++.+
T Consensus       305 ~~L~l~~n~l~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~~~l  373 (520)
T 2z7x_B          305 KNFTVSGTRMVHMLCPSKISPF-----LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------KIAEMTTQM  373 (520)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCC-----CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------HHHHHHTTC
T ss_pred             eEEEcCCCccccccchhhCCcc-----cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------cchHHHhhC
Confidence            99999999987543 2333444     55666999999999999999999999999999876322      566778889


Q ss_pred             CCCCEEECcCCcccccCccc-ccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139          511 LTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL  589 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  589 (611)
                      ++|++|++++|++++.+|.. +..+++|++|++++|++++.+|..+   .++|++|++++|+++ .+|..+..+++|++|
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            99999999999999867764 8899999999999999998888754   279999999999999 899988899999999


Q ss_pred             eccCCcCccCCCcc-ccccCCCC
Q 047139          590 DLSHNNLLGPIPYC-VGDFSAMT  611 (611)
Q Consensus       590 ~ls~n~l~g~iP~~-~~~~~~l~  611 (611)
                      ++++|+++ .+|.. +.+++.|+
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQ  471 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ECCCCcCC-ccCHHHhccCCccc
Confidence            99999998 67876 77777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.4e-45  Score=411.85  Aligned_cols=438  Identities=20%  Similarity=0.241  Sum_probs=267.7

Q ss_pred             CCCCeEEccCCcCccCCCccccCCCCCCEEEc-cCCCCCCCCCccCCCCC-CCCE----------------EE-------
Q 047139          130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL-SSNDLQGDIPDGFSSLN-SLQL----------------LD-------  184 (611)
Q Consensus       130 n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~~~~~~p~~l~~l~-~L~~----------------L~-------  184 (611)
                      ..++.|+|+++.+.|.+|+.++++++|++|+| ++|.+.|..|-...... .+..                .+       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            35667788888888999999999999999999 88877665332211000 0000                00       


Q ss_pred             -----ccCCCCCcccccccCCCCCCCCEEEccc--ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc----------
Q 047139          185 -----LSGNSFLEGQLSRNLGTLCNLQTLKLSL--NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG----------  247 (611)
Q Consensus       185 -----Ls~n~~~~~~~~~~l~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~----------  247 (611)
                           +..+.   ...+........++.+.+..  |.+++ +|..++.++      +|++|+|++|++++          
T Consensus       403 l~~~~l~~~~---~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~------~L~~L~Ls~N~Lsg~~i~~~~~~~  472 (876)
T 4ecn_A          403 LLQDAINRNP---EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLT------KLQIIYFANSPFTYDNIAVDWEDA  472 (876)
T ss_dssp             HHHHHHHTCT---TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHhhhCc---cccccccccccchhhceeccccCcccc-hhHHHhcCC------CCCEEECcCCcCCCCccccccccc
Confidence                 00000   00000001111222222222  34444 444444444      44444444444444          


Q ss_pred             -------cCCcccC--CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc-ccc-CCCcCCC-------CCCCCCE
Q 047139          248 -------NLPISLG--YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ-MNG-KFPESFG-------QLSAIRV  309 (611)
Q Consensus       248 -------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~-------~l~~L~~  309 (611)
                             .+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++       .+++|++
T Consensus       473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~  552 (876)
T 4ecn_A          473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI  552 (876)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred             ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence                   2555554  55555555555555555555555555555555555554 554 4444332       2335555


Q ss_pred             EEccCCccccccCh-hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCC-CCEEE
Q 047139          310 LELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLV  387 (611)
Q Consensus       310 L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~  387 (611)
                      |++++|.+. .+|. ..+.++++|+.|++++|..   . .++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|+
T Consensus       553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l---~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV---R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC---C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred             EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc---c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence            555555555 3443 2455555555555555332   1 233 4455556666666666666 56666666666 77777


Q ss_pred             ccCcccccccchhHHhcC-CCCCEEEccCcccccccCccc------ccCCCceEEccCCcccccCCCCC-CCcceeecCc
Q 047139          388 LNSASISDTLPSWFLQLN-LTLDELDVGGNHLSGRIPNTL------VFRFPGSVDLSSNRFEGPIPLWS-SNLTKLYLRD  459 (611)
Q Consensus       388 l~~n~l~~~~p~~~~~~~-~~L~~L~ls~n~l~~~~~~~~------~~~~l~~l~ls~n~~~~~~p~~~-~~l~~L~l~~  459 (611)
                      +++|.++ .+|..+.... ++|+.|++++|++.+.+|...      ....++.|++++|.++ .+|..+ ..+..|  ++
T Consensus       626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L--~~  701 (876)
T 4ecn_A          626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI--ST  701 (876)
T ss_dssp             CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC--SE
T ss_pred             CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC--CE
Confidence            7777766 5555443321 236777777777766555322      1125667777777776 344322 223332  44


Q ss_pred             ccCCCCeeecccccchh--------ccCCCCeEECcCCCCCCCCCCcccccCccccc--CcCCCCEEECcCCcccccCcc
Q 047139          460 LDISFNSINGSIPQSVG--------NLKQLLTLVISNNNLSDMTNNNFSGEIPESIG--SLLTIRFLVLSNNHLSGEIPP  529 (611)
Q Consensus       460 L~Ls~n~l~~~~~~~l~--------~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p~  529 (611)
                      |++++|.++ .+|..+.        ++++|++|+|++|+++         .+|..+.  .+++|+.|+|++|++++ +|.
T Consensus       702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred             EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc---------cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence            555777777 5555433        3448999999999876         5777776  89999999999999997 899


Q ss_pred             cccCCCCCCEEECCC------CcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139          530 SLKNCSLMDSLDLGE------NQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC  603 (611)
Q Consensus       530 ~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~  603 (611)
                      .+..+++|+.|+|++      |++.+.+|..+.. +++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-+..
T Consensus       771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred             hhhcCCCCCEEECCCCCCcccccccccChHHHhc-CCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence            999999999999976      8888999999886 99999999999999 68998876  69999999999987554443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.3e-43  Score=381.07  Aligned_cols=458  Identities=20%  Similarity=0.213  Sum_probs=359.8

Q ss_pred             EEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCC
Q 047139           85 IMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSN  164 (611)
Q Consensus        85 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  164 (611)
                      +.+++++              +++++ +|..+.  ++|++|++++|++          ++..|..|.++++|++|++++|
T Consensus        34 ~~l~ls~--------------~~L~~-ip~~~~--~~L~~L~Ls~N~i----------~~~~~~~~~~l~~L~~L~Ls~N   86 (562)
T 3a79_B           34 SMVDYSN--------------RNLTH-VPKDLP--PRTKALSLSQNSI----------SELRMPDISFLSELRVLRLSHN   86 (562)
T ss_dssp             CEEECTT--------------SCCCS-CCTTSC--TTCCEEECCSSCC----------CCCCGGGTTTCTTCCEEECCSC
T ss_pred             cEEEcCC--------------CCCcc-CCCCCC--CCcCEEECCCCCc----------cccChhhhccCCCccEEECCCC
Confidence            5677777              66765 666554  6677766666554          5566779999999999999999


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEccCC
Q 047139          165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYN  243 (611)
Q Consensus       165 ~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n  243 (611)
                      ++++..|+.|+++++|++|++++|++ + .+|..  .+++|++|++++|.+++. .|..++.++      +|++|++++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n  156 (562)
T 3a79_B           87 RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT------KLTFLGLSAA  156 (562)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT------TCCEEEEECS
T ss_pred             CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCEEECCCCCccccCchHhhcccC------cccEEecCCC
Confidence            99988899999999999999999995 4 57766  899999999999999984 578898888      9999999999


Q ss_pred             CCCccCCcccCCCCCC--cEEEccCCcc--cccCCCCccCcc-cCceEEecCCccccCCCc-CCCCCCCCCEEEccCCc-
Q 047139          244 QLTGNLPISLGYLKNL--RYLELWYNSF--LGSIPPSLGNLT-FLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQ-  316 (611)
Q Consensus       244 ~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-  316 (611)
                      ++++.   .+..+++|  ++|++++|.+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. 
T Consensus       157 ~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          157 KFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             BCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             ccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence            99864   34445555  9999999999  888888877654 122568889988876554 35678899999999985 


Q ss_pred             ----cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhc-----cCCCCCCEEE
Q 047139          317 ----WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLV  387 (611)
Q Consensus       317 ----l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~  387 (611)
                          +.+.+  ..+..+++|+.+++.++.................+|++|++++|.+.+.+|..+     ..++.|+.++
T Consensus       234 ~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~  311 (562)
T 3a79_B          234 NCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH  311 (562)
T ss_dssp             THHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred             ccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence                22322  257888999999988743211000000011123489999999999999999887     7777777778


Q ss_pred             ccCcccccccc-hhHHhc--CCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCC
Q 047139          388 LNSASISDTLP-SWFLQL--NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF  464 (611)
Q Consensus       388 l~~n~l~~~~p-~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~  464 (611)
                      +..+.+  .+| .++...  ..+++.|++++|.+..... ......++.+++++|.+++.+|..+..+..|  ++|++++
T Consensus       312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~  386 (562)
T 3a79_B          312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL--QTLILQR  386 (562)
T ss_dssp             EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSC--CEEECCS
T ss_pred             ccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCC--CEEECCC
Confidence            888777  555 333332  2579999999999863321 1123479999999999999899888777766  7788899


Q ss_pred             Ceeec--ccccchhccCCCCeEECcCCCCCCCCCCcccccCcc-cccCcCCCCEEECcCCcccccCcccccCCCCCCEEE
Q 047139          465 NSING--SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE-SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD  541 (611)
Q Consensus       465 n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  541 (611)
                      |++++  .+|..+..+++|++|++++|+++.        .+|. .+..+++|++|++++|++++.+|..+.  ++|++|+
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~  456 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNS--------HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD  456 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBS--------CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCC--------ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence            99997  446778999999999999998763        2443 255689999999999999988887665  7999999


Q ss_pred             CCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcc-ccCCCCCCEeeccCCcCccCCCc
Q 047139          542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLLGPIPY  602 (611)
Q Consensus       542 Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~g~iP~  602 (611)
                      +++|+++ .+|.+++ .+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus       457 L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          457 LHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            9999999 8999888 4999999999999999 57766 89999999999999999987763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-41  Score=373.82  Aligned_cols=454  Identities=22%  Similarity=0.179  Sum_probs=256.4

Q ss_pred             CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139          121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG  200 (611)
Q Consensus       121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  200 (611)
                      .+++|||++|++          ++..|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|+ +++..+..|.
T Consensus        53 ~~~~LdLs~N~i----------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~  121 (635)
T 4g8a_A           53 STKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS  121 (635)
T ss_dssp             TCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred             CCCEEEeeCCCC----------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence            455555555544          44455678888888888888888887777778888888888888888 4554456678


Q ss_pred             CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccC
Q 047139          201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGN  279 (611)
Q Consensus       201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  279 (611)
                      ++++|++|++++|++++..+..++.++      +|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            888888888888888877777777776      88888888888764 35677778888888888888888777776665


Q ss_pred             cccC----ceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCC-------------
Q 047139          280 LTFL----EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN-------------  342 (611)
Q Consensus       280 l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~-------------  342 (611)
                      +.++    ..++++.|.+....+.. .....++.+++.+|.....+....+..+..++...+.....             
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            5444    35777777777544433 33445677777777655444444555565555444432111             


Q ss_pred             -----------------CCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHH---
Q 047139          343 -----------------SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL---  402 (611)
Q Consensus       343 -----------------~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~---  402 (611)
                                       ..........+....+++.+.+..+.+...  ..+.....++.|++.+|.+.+..+..+.   
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~  352 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLK  352 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhh
Confidence                             000011111112222344444444333221  1123334455555555444322211100   


Q ss_pred             ---------------hcCCCCCEEEccCcccccc--cCccccc-CCCceEEccCCcccccCCCCCCCcceeecCcccCCC
Q 047139          403 ---------------QLNLTLDELDVGGNHLSGR--IPNTLVF-RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF  464 (611)
Q Consensus       403 ---------------~~~~~L~~L~ls~n~l~~~--~~~~~~~-~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~  464 (611)
                                     ...++|+.+++++|.+...  .+..... ..++.+++..|...+..+ .+..+..+  +.++++.
T Consensus       353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L--~~l~l~~  429 (635)
T 4g8a_A          353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQL--EHLDFQH  429 (635)
T ss_dssp             EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTC--CEEECTT
T ss_pred             hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccccc--cchhhhh
Confidence                           0135666666666666432  2222222 256666666666554332 22223222  3344455


Q ss_pred             Ceeecccc-cchhccCCCCeEECcCCCCC----------------CCCCCcc-cccCcccccCcCCCCEEECcCCccccc
Q 047139          465 NSINGSIP-QSVGNLKQLLTLVISNNNLS----------------DMTNNNF-SGEIPESIGSLLTIRFLVLSNNHLSGE  526 (611)
Q Consensus       465 n~l~~~~~-~~l~~l~~L~~L~L~~n~i~----------------~l~~n~~-~g~ip~~~~~l~~L~~L~Ls~n~l~~~  526 (611)
                      ++.....+ ..+..+++++.+++++|.+.                +++.|.+ .+.+|..+..+++|++|+|++|++++.
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l  509 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  509 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence            55544333 33455666666666655543                1222221 223444555556666666666666655


Q ss_pred             CcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCC-CCCCEeeccCCcCcc
Q 047139          527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL-SALHILDLSHNNLLG  598 (611)
Q Consensus       527 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~g  598 (611)
                      .|..|.++++|++|+|++|+|++..|..+. .+++|++|+|++|++++..|..+..+ ++|++|++++|++.-
T Consensus       510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             ChHHHcCCCCCCEEECCCCcCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            555566666666666666666543333333 25666666666666665555555555 456666666665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.7e-42  Score=375.49  Aligned_cols=443  Identities=19%  Similarity=0.200  Sum_probs=344.4

Q ss_pred             CEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCC
Q 047139          123 EYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTL  202 (611)
Q Consensus       123 ~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  202 (611)
                      +++|+++|++          + .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|+ +++..|..|+++
T Consensus        34 ~~l~ls~~~L----------~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l   99 (562)
T 3a79_B           34 SMVDYSNRNL----------T-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFN   99 (562)
T ss_dssp             CEEECTTSCC----------C-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred             cEEEcCCCCC----------c-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCC
Confidence            5566655554          4 4676554  899999999999998888899999999999999999 677778899999


Q ss_pred             CCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139          203 CNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT  281 (611)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  281 (611)
                      ++|++|++++|.++. +|..  .++      +|++|++++|++++ .+|..++++++|++|++++|.+++.   .+..++
T Consensus       100 ~~L~~L~Ls~N~l~~-lp~~--~l~------~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~  167 (562)
T 3a79_B          100 QDLEYLDVSHNRLQN-ISCC--PMA------SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA  167 (562)
T ss_dssp             TTCCEEECTTSCCCE-ECSC--CCT------TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT
T ss_pred             CCCCEEECCCCcCCc-cCcc--ccc------cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh
Confidence            999999999999984 4443  455      99999999999996 4568999999999999999999863   455666


Q ss_pred             cC--ceEEecCCcc--ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC--CceeeccCCCC
Q 047139          282 FL--EELYLTSNQM--NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS--SLSFNISFDWI  354 (611)
Q Consensus       282 ~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~  354 (611)
                      +|  ++|++++|.+  ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|...  .+.+ ....+.
T Consensus       168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~  246 (562)
T 3a79_B          168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELT  246 (562)
T ss_dssp             TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHH
T ss_pred             hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHh
Confidence            66  9999999999  888887777654 12266888999988888777888999999999985310  0111 111234


Q ss_pred             CCcceeEEEecccccCcc----cchhccCCCCCCEEEccCcccccccchhHH----hcCCCCCEEEccCcccccccCccc
Q 047139          355 PPFKLRYLVIRYYQLGPK----FPTWLRNQTELTTLVLNSASISDTLPSWFL----QLNLTLDELDVGGNHLSGRIPNTL  426 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~----~~~~~L~~L~ls~n~l~~~~~~~~  426 (611)
                      ..+.++.+++.++.+.+.    ++..+ ..++|++|++++|.++|.+|..++    ..++.|+.++++.+.+  .+|...
T Consensus       247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~  323 (562)
T 3a79_B          247 RGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEA  323 (562)
T ss_dssp             SCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHH
T ss_pred             ccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhh
Confidence            456788888888776642    22222 235999999999999998888763    2224444555555554  344221


Q ss_pred             -----ccCCCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCccc
Q 047139          427 -----VFRFPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFS  500 (611)
Q Consensus       427 -----~~~~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~  500 (611)
                           ....++.+++++|.+..... ..+.++     ++|++++|.+++..|..+.++++|++|++++|+++.+.     
T Consensus       324 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----  393 (562)
T 3a79_B          324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-----TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-----  393 (562)
T ss_dssp             HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC-----CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-----
T ss_pred             hhhhhccCcceEEEccCCCcccccCccCCCCc-----eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-----
Confidence                 22369999999999865332 233334     55666999999999999999999999999999887433     


Q ss_pred             ccCcccccCcCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcc
Q 047139          501 GEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE  579 (611)
Q Consensus       501 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~  579 (611)
                       .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.   ++|++|++++|+++ .+|..
T Consensus       394 -~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          394 -KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             -HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTT
T ss_pred             -cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChh
Confidence             4556778899999999999999985665 588999999999999999988776432   69999999999999 78988


Q ss_pred             ccCCCCCCEeeccCCcCccCCCcc-ccccCCCC
Q 047139          580 LCKLSALHILDLSHNNLLGPIPYC-VGDFSAMT  611 (611)
Q Consensus       580 l~~l~~L~~L~ls~n~l~g~iP~~-~~~~~~l~  611 (611)
                      +..+++|++|++++|+++ .+|.. ++.++.|+
T Consensus       469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  500 (562)
T 3a79_B          469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ  500 (562)
T ss_dssp             TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence            889999999999999999 67776 77777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9e-40  Score=362.38  Aligned_cols=446  Identities=21%  Similarity=0.191  Sum_probs=284.4

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL  161 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  161 (611)
                      ..++.|+|++              +.+++..+.+|.++++|++|||++|+++          +..|.+|.++++|++|+|
T Consensus        52 ~~~~~LdLs~--------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----------~i~~~~f~~L~~L~~L~L  107 (635)
T 4g8a_A           52 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLIL  107 (635)
T ss_dssp             TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEEeeC--------------CCCCCCCHHHHhCCCCCCEEECCCCcCC----------CcChhHhcCCCCCCEEEc
Confidence            3567777777              8999888889999999999999988664          233445666666666666


Q ss_pred             cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEc
Q 047139          162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLEL  240 (611)
Q Consensus       162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L  240 (611)
                      ++|++++..+..|+++++|++|++++|+ +++..+..|+++++|++|++++|.+++. .|..++.++      +|++|++
T Consensus       108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------~L~~L~L  180 (635)
T 4g8a_A          108 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDL  180 (635)
T ss_dssp             TTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEEC
T ss_pred             cCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccch------hhhhhcc
Confidence            6666665555566666666666666666 3444444566666666666666666543 455555555      6666666


Q ss_pred             cCCCCCccCCcccCCCCCC----cEEEccCCcccccCCCCccCcccCceEEecCCcccc---------------------
Q 047139          241 GYNQLTGNLPISLGYLKNL----RYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG---------------------  295 (611)
Q Consensus       241 s~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------------------  295 (611)
                      ++|++++..+..+..+.++    ..++++.|.+....+..+ ....++.+++.+|....                     
T Consensus       181 ~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  259 (635)
T 4g8a_A          181 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  259 (635)
T ss_dssp             CSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             cCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence            6666665555555433322    245555555543222221 22223333333321110                     


Q ss_pred             -------------------------------------CCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcC
Q 047139          296 -------------------------------------KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI  338 (611)
Q Consensus       296 -------------------------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  338 (611)
                                                           ..+..+..+.+++.+++.++.+....   .+.....++.|++.
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~  336 (635)
T 4g8a_A          260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELV  336 (635)
T ss_dssp             CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEE
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcc
Confidence                                                 01111222334444554444443321   23344455555555


Q ss_pred             ccCCCCcee----------------eccCCCCCCcceeEEEecccccCc--ccchhccCCCCCCEEEccCcccccccchh
Q 047139          339 KTSNSSLSF----------------NISFDWIPPFKLRYLVIRYYQLGP--KFPTWLRNQTELTTLVLNSASISDTLPSW  400 (611)
Q Consensus       339 ~~~~~~~~~----------------~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~  400 (611)
                      ++....+..                ........+++|+.++++.|.+..  ..+..+..+.+|+.+++..+......+ .
T Consensus       337 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~  415 (635)
T 4g8a_A          337 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-N  415 (635)
T ss_dssp             SCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-C
T ss_pred             cccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-c
Confidence            432211110                011122345566777777666542  344555566677777777766554322 2


Q ss_pred             HHhcCCCCCEEEccCcccccccCcccc--cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee-cccccchhc
Q 047139          401 FLQLNLTLDELDVGGNHLSGRIPNTLV--FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN-GSIPQSVGN  477 (611)
Q Consensus       401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~-~~~~~~l~~  477 (611)
                      +. ..++|+.++++.+......+....  ...++.++++.|.+.+..+..+..+..+  +.|++++|.+. +..|..|..
T Consensus       416 ~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--~~L~Ls~N~~~~~~~~~~~~~  492 (635)
T 4g8a_A          416 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLPDIFTE  492 (635)
T ss_dssp             CT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--CEEECTTCEEGGGEECSCCTT
T ss_pred             cc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh--hhhhhhhcccccccCchhhhh
Confidence            22 246778888877777655543332  2268888999998888887776666655  56777999754 457788999


Q ss_pred             cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139          478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE  557 (611)
Q Consensus       478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  557 (611)
                      +++|++|+|++|+++        +..|..++.+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..
T Consensus       493 l~~L~~L~Ls~N~L~--------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             CTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             ccccCEEECCCCccC--------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            999999999988765        345667778999999999999999888899999999999999999999888877765


Q ss_pred             cC-CCCcEEECcCCcCccc
Q 047139          558 SM-PSLSILRLRSNHFNGT  575 (611)
Q Consensus       558 ~l-~~L~~L~ls~n~l~~~  575 (611)
                       + ++|++|++++|++.+.
T Consensus       565 -l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          565 -FPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             -CCTTCCEEECTTCCBCCS
T ss_pred             -hhCcCCEEEeeCCCCccc
Confidence             5 6899999999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-40  Score=354.47  Aligned_cols=376  Identities=21%  Similarity=0.216  Sum_probs=245.6

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc-cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL-SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~  232 (611)
                      ++|++|++++|.+++..|..|+++++|++|++++|. ..+.+ +..+.++++|++|++++|.+++..|..++.++     
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-----  103 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-----
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhccCcc-----
Confidence            566666666666666666666666666666666666 33233 44566666666666666666666666666555     


Q ss_pred             CCCcEEEccCCCCCccCCcc--cCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCccccCCCcCCCCC--CCC
Q 047139          233 SSLARLELGYNQLTGNLPIS--LGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKFPESFGQL--SAI  307 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L  307 (611)
                       +|++|++++|++++..|..  +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+  .++
T Consensus       104 -~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          104 -NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             -TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             -cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence             6666666666666544433  666667777777777766655554 5666777777777777666666555544  456


Q ss_pred             CEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEE
Q 047139          308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLV  387 (611)
Q Consensus       308 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  387 (611)
                      +.|++++|.+.+..+. .+.                   .                        .....+..+++|++|+
T Consensus       183 ~~L~l~~n~l~~~~~~-~~~-------------------~------------------------~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          183 TLLRLSSITLQDMNEY-WLG-------------------W------------------------EKCGNPFKNTSITTLD  218 (455)
T ss_dssp             EEEECTTCBCTTCSTT-CTT-------------------H------------------------HHHCCTTTTCEEEEEE
T ss_pred             cccccccCcccccchh-hcc-------------------c------------------------cccccccccceeeeEe
Confidence            6666666665442211 000                   0                        0001122335566666


Q ss_pred             ccCcccccccchhHHhc--CCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCC
Q 047139          388 LNSASISDTLPSWFLQL--NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN  465 (611)
Q Consensus       388 l~~n~l~~~~p~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n  465 (611)
                      +++|++++..|..+...  .++++.+++++|...+...             ..+.+.+..+..+..+..-.+++|++++|
T Consensus       219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred             cCCCcccccchhhhhccccccceeeEeecccccccccc-------------chhhhccCcccccccccccCceEEEecCc
Confidence            66666666666655543  2567777777766543211             11122222222222222223466666888


Q ss_pred             eeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 047139          466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN  545 (611)
Q Consensus       466 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  545 (611)
                      .+++..|..++.+++|++|++++|+++        +..|..++.+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEIN--------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred             cccccchhhcccCCCCCEEECCCCccc--------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence            888888888888889999988887765        344556677888999999999888777888888899999999999


Q ss_pred             cCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139          546 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY  602 (611)
Q Consensus       546 ~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~  602 (611)
                      ++++..|..+.. +++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       358 ~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          358 HIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccccChhhccc-cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            988777777765 88999999999999876666678888999999999999888883

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.8e-41  Score=336.70  Aligned_cols=293  Identities=27%  Similarity=0.445  Sum_probs=242.3

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEeCCCCCCCCCCccccccccccee--
Q 047139           38 GCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCS--WRGVGCNNRT--GSIIMLNLNNPFRDSFDSYEDDAVHELRG--  110 (611)
Q Consensus        38 ~~~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~l~~--  110 (611)
                      .|.++|++||++||+++.+|. .+.+| .+.+||.  |.||.|+..+  ++|++|++++              +.+.+  
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------------~~l~~~~   66 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC--------------CCccCCc
Confidence            589999999999999998886 68899 5678998  9999998655  8999999999              78888  


Q ss_pred             eeCccccCCCCCCEEECCC-CCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139          111 KISPSLLQLKDLEYLDLSL-NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS  189 (611)
Q Consensus       111 ~~~~~l~~l~~L~~L~ls~-n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  189 (611)
                      .+|..+.++++|++|++++ |          .+.+.+|..++++++|++|++++|.+++.+|..|+++++|++|++++|.
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n----------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGIN----------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEET----------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ccChhHhCCCCCCeeeCCCCC----------cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence            8899999999988887763 4          4457888889999999999999999988889889999999999999998


Q ss_pred             CCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcc
Q 047139          190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF  269 (611)
Q Consensus       190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  269 (611)
                       +.+.+|..++++++|++|++++|.+++.+|..+..++     ++|++|++++|.+++.+|..+..++ |++|++++|.+
T Consensus       137 -l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          137 -LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             -EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             -cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence             6777888888899999999999998888888877664     2688888888888888888888887 88888888888


Q ss_pred             cccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeec
Q 047139          270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI  349 (611)
Q Consensus       270 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  349 (611)
                      ++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|. .+..+++|++|++++|         
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N---------  278 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFN---------  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSS---------
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCC---------
Confidence            888888888888888888888888866665 77788888888888888877776 6777777777777763         


Q ss_pred             cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcc
Q 047139          350 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSAS  392 (611)
Q Consensus       350 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  392 (611)
                                        .+.+.+|.. ..+++|+.+++++|.
T Consensus       279 ------------------~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 ------------------NLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ------------------EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ------------------cccccCCCC-ccccccChHHhcCCC
Confidence                              334444443 556667777777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.2e-40  Score=347.06  Aligned_cols=389  Identities=24%  Similarity=0.335  Sum_probs=237.2

Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCC-------------CEEEccCCCCCcccccccCCC
Q 047139          135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSL-------------QLLDLSGNSFLEGQLSRNLGT  201 (611)
Q Consensus       135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L-------------~~L~Ls~n~~~~~~~~~~l~~  201 (611)
                      |++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++|             ++|++++|.+ ++ +|..   
T Consensus        16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~-lp~~---   89 (454)
T 1jl5_A           16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS-LPEL---   89 (454)
T ss_dssp             -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-CCSC---
T ss_pred             hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-CCCC---
Confidence            33344444 5788888888888888888888888888888888764             8888888884 33 4442   


Q ss_pred             CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139          202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT  281 (611)
Q Consensus       202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  281 (611)
                      .++|++|++++|.+++ +|..+   +      +|++|++++|++++ +|..   .++|++|++++|++++ +| .+++++
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~~---~------~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPELP---Q------SLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCCC---T------TCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             cCCCCEEEccCCcCCc-ccccc---C------CCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            3688888888888887 45322   2      88888888888874 3322   2688888888888885 67 588888


Q ss_pred             cCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeE
Q 047139          282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRY  361 (611)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  361 (611)
                      +|++|++++|++++ +|..+   ++|++|++++|.+.+ +|  .++++++|++|++++|....+.    .   ...+|++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~----~---~~~~L~~  219 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP----D---LPLSLES  219 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC----C---CCTTCCE
T ss_pred             CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC----C---CcCcccE
Confidence            88888888888875 55443   478888888888877 45  4788888888888886543211    1   1247888


Q ss_pred             EEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcc
Q 047139          362 LVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRF  441 (611)
Q Consensus       362 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~  441 (611)
                      |++++|.+. .+|. +..+++|++|++++|++++ +|.    ..++|++|++++|++++ +|...  ..++.+++++|++
T Consensus       220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~~--~~L~~L~ls~N~l  289 (454)
T 1jl5_A          220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPELP--QSLTFLDVSENIF  289 (454)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCC
T ss_pred             EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCccc--CcCCEEECcCCcc
Confidence            888888877 5664 7788888888888888875 443    23688888888888875 45432  4678888888888


Q ss_pred             cccCCCCCCCcceeecCcccCCCCeeecccccchhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC
Q 047139          442 EGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN  520 (611)
Q Consensus       442 ~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~  520 (611)
                      ++. |....+++.     |++++|.+++ ++    .+ ++|++|++++|+++.         +|..   +++|++|++++
T Consensus       290 ~~l-~~~~~~L~~-----L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~---------lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          290 SGL-SELPPNLYY-----LNASSNEIRS-LC----DLPPSLEELNVSNNKLIE---------LPAL---PPRLERLIASF  346 (454)
T ss_dssp             SEE-SCCCTTCCE-----EECCSSCCSE-EC----CCCTTCCEEECCSSCCSC---------CCCC---CTTCCEEECCS
T ss_pred             Ccc-cCcCCcCCE-----EECcCCcCCc-cc----CCcCcCCEEECCCCcccc---------cccc---CCcCCEEECCC
Confidence            762 222234444     4448887775 22    22 478888888777652         3332   46788888888


Q ss_pred             CcccccCcccccCCCCCCEEECCCCcCcc--cChhHHhhcC-------------CCCcEEECcCCcCcc--cCCccccCC
Q 047139          521 NHLSGEIPPSLKNCSLMDSLDLGENQLSG--NIPAWIGESM-------------PSLSILRLRSNHFNG--TIPSELCKL  583 (611)
Q Consensus       521 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~~l-------------~~L~~L~ls~n~l~~--~~p~~l~~l  583 (611)
                      |+++ .+|.   .+++|++|++++|++++  .+|.++.. +             ++|++|++++|++++  .+|.     
T Consensus       347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----  416 (454)
T 1jl5_A          347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----  416 (454)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-EECCC-----------------------------------
T ss_pred             Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-hhhcccccccccccCcCCEEECCCCcCCccccchh-----
Confidence            8887 4665   46778888888888887  66665543 3             556666666666654  3442     


Q ss_pred             CCCCEeeccCCcCccCCCcc
Q 047139          584 SALHILDLSHNNLLGPIPYC  603 (611)
Q Consensus       584 ~~L~~L~ls~n~l~g~iP~~  603 (611)
                       +++.|.+.+|.+.+.+|..
T Consensus       417 -sl~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          417 -SVEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             --------------------
T ss_pred             -hHhheeCcCcccCCccccC
Confidence             2344455566655555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.4e-39  Score=342.19  Aligned_cols=365  Identities=23%  Similarity=0.232  Sum_probs=264.6

Q ss_pred             CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCC-CccCCCCCCCCEEEccCCCCCccccccc
Q 047139          120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDI-PDGFSSLNSLQLLDLSGNSFLEGQLSRN  198 (611)
Q Consensus       120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (611)
                      ++|++|++++|.          +++..|..+.++++|++|++++|.+.+.+ |..|.++++|++|++++|+ +.+..|..
T Consensus        30 ~~l~~L~Ls~n~----------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~   98 (455)
T 3v47_A           30 AHVNYVDLSLNS----------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGA   98 (455)
T ss_dssp             TTCCEEECCSSC----------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTT
T ss_pred             CccCEEEecCCc----------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhh
Confidence            566666666554          45567888999999999999999987555 5679999999999999999 66777889


Q ss_pred             CCCCCCCCEEEcccccCCCccchh--hhcCcccCCCCCCcEEEccCCCCCccCCcc-cCCCCCCcEEEccCCcccccCCC
Q 047139          199 LGTLCNLQTLKLSLNQFSGEVSDF--IDGLSECINSSSLARLELGYNQLTGNLPIS-LGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      ++++++|++|++++|.+++..+..  +..++      +|++|++++|.+++..|.. +.++++|++|++++|.+++..|.
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLT------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCT------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcc------cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence            999999999999999998865554  77776      9999999999999887776 78999999999999999988888


Q ss_pred             CccCc--ccCceEEecCCccccCCCcC--------CCCCCCCCEEEccCCccccccChhhhcC---CCCCCEEEcCccCC
Q 047139          276 SLGNL--TFLEELYLTSNQMNGKFPES--------FGQLSAIRVLELSDNQWEGFITDAHLRN---LTSLEELSLIKTSN  342 (611)
Q Consensus       276 ~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~l~~---l~~L~~L~l~~~~~  342 (611)
                      .+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+.+..+.. +..   .++|+.|++++|..
T Consensus       173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTT
T ss_pred             hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccc
Confidence            88776  78999999999998654443        335678999999999888766652 322   24555555554322


Q ss_pred             CCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHh-cCCCCCEEEccCcccccc
Q 047139          343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ-LNLTLDELDVGGNHLSGR  421 (611)
Q Consensus       343 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~~L~~L~ls~n~l~~~  421 (611)
                                                 .+..              +..+.+.+..+..+.. ..++|+++++++|++.  
T Consensus       252 ---------------------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--  288 (455)
T 3v47_A          252 ---------------------------MGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF--  288 (455)
T ss_dssp             ---------------------------TSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC--
T ss_pred             ---------------------------cccc--------------cchhhhccCcccccccccccCceEEEecCcccc--
Confidence                                       1110              0000111110100000 0134555555555444  


Q ss_pred             cCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccc
Q 047139          422 IPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSG  501 (611)
Q Consensus       422 ~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g  501 (611)
                                           +..|..+..++.|  ++|++++|.+++..|..|..+++|++|++++|+++        +
T Consensus       289 ---------------------~~~~~~~~~l~~L--~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~  337 (455)
T 3v47_A          289 ---------------------ALLKSVFSHFTDL--EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--------S  337 (455)
T ss_dssp             ---------------------EECTTTTTTCTTC--CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------E
T ss_pred             ---------------------ccchhhcccCCCC--CEEECCCCcccccChhHhcCcccCCEEECCCCccC--------C
Confidence                                 4444444444443  55666888888777778888888888888887654        2


Q ss_pred             cCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCC
Q 047139          502 EIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP  577 (611)
Q Consensus       502 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p  577 (611)
                      ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|...+..+++|++|++++|++++.+|
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence            345666778888888888888887778888888888888888888884 555444458888888888888888777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.4e-39  Score=340.81  Aligned_cols=384  Identities=21%  Similarity=0.227  Sum_probs=269.6

Q ss_pred             CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCC-------------CEEEcccccCCCc
Q 047139          152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL-------------QTLKLSLNQFSGE  218 (611)
Q Consensus       152 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~  218 (611)
                      +.++|++|++++|.+ +.+|++++++++|++|++++|. +.+.+|..++++++|             ++|++++|.+++.
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence            468999999999999 7999999999999999999999 788999999998875             9999999998863


Q ss_pred             cchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC
Q 047139          219 VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP  298 (611)
Q Consensus       219 ~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  298 (611)
                       |..   .+      +|++|++++|.+++ +|..   .++|++|++++|++++ +|..   .++|++|++++|.+++ +|
T Consensus        87 -p~~---~~------~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           87 -PEL---PP------HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             -CSC---CT------TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC
T ss_pred             -CCC---cC------CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc
Confidence             221   12      89999999999996 6654   4789999999999985 4432   2689999999999996 77


Q ss_pred             cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc
Q 047139          299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR  378 (611)
Q Consensus       299 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  378 (611)
                       .++++++|++|++++|++++ +|.    ..++|++|++++|....    ++ .+..+++|+.|++++|.+.+ +|..  
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~----l~-~~~~l~~L~~L~l~~N~l~~-l~~~--  213 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE----LP-ELQNLPFLTAIYADNNSLKK-LPDL--  213 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred             -ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc----Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence             59999999999999999987 453    23699999999965533    23 57788999999999999886 4443  


Q ss_pred             CCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecC
Q 047139          379 NQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLR  458 (611)
Q Consensus       379 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~  458 (611)
                       .++|++|++++|.++ .+|. +. .+++|++|++++|++++ +|...  ..++.+++++|++++ +|..+.+++.+++ 
T Consensus       214 -~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~N~l~~-l~~~~~~L~~L~l-  284 (454)
T 1jl5_A          214 -PLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLP--PSLEALNVRDNYLTD-LPELPQSLTFLDV-  284 (454)
T ss_dssp             -CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCC--TTCCEEECCSSCCSC-CCCCCTTCCEEEC-
T ss_pred             -cCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccc--cccCEEECCCCcccc-cCcccCcCCEEEC-
Confidence             258999999999998 6775 33 46899999999999985 55432  579999999999987 6666655555544 


Q ss_pred             cccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCC
Q 047139          459 DLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD  538 (611)
Q Consensus       459 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  538 (611)
                          ++|.+++. |..   .++|++|++++|+++.+         +..   .++|++|++++|++++ +|..   +++|+
T Consensus       285 ----s~N~l~~l-~~~---~~~L~~L~l~~N~l~~i---------~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~  340 (454)
T 1jl5_A          285 ----SENIFSGL-SEL---PPNLYYLNASSNEIRSL---------CDL---PPSLEELNVSNNKLIE-LPAL---PPRLE  340 (454)
T ss_dssp             ----CSSCCSEE-SCC---CTTCCEEECCSSCCSEE---------CCC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             ----cCCccCcc-cCc---CCcCCEEECcCCcCCcc---------cCC---cCcCCEEECCCCcccc-cccc---CCcCC
Confidence                99999862 221   26899999999987632         210   1489999999999996 6654   58999


Q ss_pred             EEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc--cCCccccCC-------------CCCCEeeccCCcCcc--CCC
Q 047139          539 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG--TIPSELCKL-------------SALHILDLSHNNLLG--PIP  601 (611)
Q Consensus       539 ~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~n~l~g--~iP  601 (611)
                      +|++++|+++ .+|.    .+++|++|++++|++++  .+|.++..+             ++|++|++++|+++|  .||
T Consensus       341 ~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP  415 (454)
T 1jl5_A          341 RLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP  415 (454)
T ss_dssp             EEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred             EEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence            9999999999 6887    28999999999999999  789888877             889999999999998  999


Q ss_pred             ccccccC
Q 047139          602 YCVGDFS  608 (611)
Q Consensus       602 ~~~~~~~  608 (611)
                      .++.++.
T Consensus       416 ~sl~~L~  422 (454)
T 1jl5_A          416 ESVEDLR  422 (454)
T ss_dssp             -------
T ss_pred             hhHhhee
Confidence            9887664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-37  Score=327.19  Aligned_cols=365  Identities=18%  Similarity=0.154  Sum_probs=240.1

Q ss_pred             eeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCC
Q 047139          109 RGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN  188 (611)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n  188 (611)
                      .+..+.+++++++|++|++++|.++          + +| .+..+++|++|++++|.+++. |  ++.+++|++|++++|
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~----------~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSIT----------D-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSN   95 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCC----------C-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS
T ss_pred             CcccccChhHcCCCCEEEccCCCcc----------c-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCC
Confidence            3334446677777777777776554          2 34 577788888888888888753 3  778888888888888


Q ss_pred             CCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCc
Q 047139          189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS  268 (611)
Q Consensus       189 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  268 (611)
                      + +++ ++  ++++++|++|++++|.+++. +  ++.++      +|++|++++|++++. +  ++.+++|++|++++|+
T Consensus        96 ~-l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~------~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           96 K-LTN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNP------LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             C-CSC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCT------TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred             C-Cce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCC------cCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence            7 343 33  77788888888888877763 2  44444      778888888877753 2  6677777788877775


Q ss_pred             ccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceee
Q 047139          269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN  348 (611)
Q Consensus       269 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  348 (611)
                      ..+.+  .+..+++|++|++++|.+++ +|  +..+++|++|++++|.+++.    .++.+++|+.|++++         
T Consensus       160 ~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~---------  221 (457)
T 3bz5_A          160 KITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSS---------  221 (457)
T ss_dssp             CCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCS---------
T ss_pred             ccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcC---------
Confidence            55454  36677777777777777775 33  66777777777777777653    255556666666555         


Q ss_pred             ccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCccccc
Q 047139          349 ISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF  428 (611)
Q Consensus       349 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  428 (611)
                                        |.+.+ +|  +..+++|+.|++++|++++..+.    .+++|+.+++++|+           
T Consensus       222 ------------------N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~-----------  265 (457)
T 3bz5_A          222 ------------------NKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTD-----------  265 (457)
T ss_dssp             ------------------SCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCC-----------
T ss_pred             ------------------Ccccc-cC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCC-----------
Confidence                              33343 33  45566666666666666654322    23566666666553           


Q ss_pred             CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCccccc
Q 047139          429 RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG  508 (611)
Q Consensus       429 ~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~  508 (611)
                        ++.+++++|.+.+.+|.  ..+..|  ++|++++|...+.+|.   ..++|+.|++++                    
T Consensus       266 --L~~L~l~~n~~~~~~~~--~~l~~L--~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~--------------------  316 (457)
T 3bz5_A          266 --LLEIDLTHNTQLIYFQA--EGCRKI--KELDVTHNTQLYLLDC---QAAGITELDLSQ--------------------  316 (457)
T ss_dssp             --CSCCCCTTCTTCCEEEC--TTCTTC--CCCCCTTCTTCCEEEC---TTCCCSCCCCTT--------------------
T ss_pred             --CCEEECCCCccCCcccc--cccccC--CEEECCCCcccceecc---CCCcceEechhh--------------------
Confidence              33556666666666552  233333  4555577776666663   334555555544                    


Q ss_pred             CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCE
Q 047139          509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI  588 (611)
Q Consensus       509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  588 (611)
                       +++|++|++++|++++. +  +.++++|+.|++++|++++         ++.|+.|++++|.+.|.     +.+..|+.
T Consensus       317 -~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~  378 (457)
T 3bz5_A          317 -NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPK  378 (457)
T ss_dssp             -CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred             -cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCc
Confidence             34788888888888863 3  7788888888888888874         34556667788888775     24456777


Q ss_pred             eeccCCcCccCCCcccc
Q 047139          589 LDLSHNNLLGPIPYCVG  605 (611)
Q Consensus       589 L~ls~n~l~g~iP~~~~  605 (611)
                      +++++|+++|.||..+.
T Consensus       379 l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             BCCBTTBEEEECCTTCB
T ss_pred             cccccCcEEEEcChhHh
Confidence            78888888888887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-35  Score=315.35  Aligned_cols=378  Identities=27%  Similarity=0.350  Sum_probs=231.6

Q ss_pred             CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139          119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN  198 (611)
Q Consensus       119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (611)
                      +++++.|+++++.++           .+| .+..+++|++|++++|.+++. |. ++++++|++|++++|. +.+.. . 
T Consensus        45 l~~l~~L~l~~~~i~-----------~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~-~-  107 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-----------SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQ-IADIT-P-  107 (466)
T ss_dssp             HHTCCEEECCSSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC-CCCCG-G-
T ss_pred             hccccEEecCCCCCc-----------cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCc-cccCh-h-
Confidence            445666666555443           233 266677777777777777643 33 7777777777777776 33322 2 


Q ss_pred             CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139          199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG  278 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  278 (611)
                      ++++++|++|++++|.+++..+  +..++      +|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+.
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~  174 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP--LKNLT------NLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLA  174 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCT------TCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGT
T ss_pred             hcCCCCCCEEECCCCCCCCChH--HcCCC------CCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhc
Confidence            6677777777777776665433  44444      66677776666653 22 36666667776665 333322 2 266


Q ss_pred             CcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcc
Q 047139          279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFK  358 (611)
Q Consensus       279 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  358 (611)
                      ++++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+   ++.+++|++|++++|..                
T Consensus       175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l----------------  233 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL----------------  233 (466)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC----------------
T ss_pred             cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc----------------
Confidence            666666666666666532  235566666666666666655332   44455555555555322                


Q ss_pred             eeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccC
Q 047139          359 LRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSS  438 (611)
Q Consensus       359 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~  438 (611)
                                 .+.  ..+..+++|++|++++|.+.+..|   ...+++|+.|++++|++++..+               
T Consensus       234 -----------~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---------------  282 (466)
T 1o6v_A          234 -----------KDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP---------------  282 (466)
T ss_dssp             -----------CCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG---------------
T ss_pred             -----------ccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc---------------
Confidence                       211  234555666666666666655443   2223566666666665553221               


Q ss_pred             CcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEEC
Q 047139          439 NRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL  518 (611)
Q Consensus       439 n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~L  518 (611)
                                +..+..|  ++|++++|.+++..+  +..+++|++|++++|+++++         ++ +..+++|++|++
T Consensus       283 ----------~~~l~~L--~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---------~~-~~~l~~L~~L~l  338 (466)
T 1o6v_A          283 ----------LAGLTAL--TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---------SP-VSSLTKLQRLFF  338 (466)
T ss_dssp             ----------GTTCTTC--SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---------GG-GGGCTTCCEEEC
T ss_pred             ----------ccCCCcc--CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---------hh-hccCccCCEeEC
Confidence                      1122222  444457777765444  78899999999999887632         22 567899999999


Q ss_pred             cCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-------CCCCCCEeec
Q 047139          519 SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-------KLSALHILDL  591 (611)
Q Consensus       519 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-------~l~~L~~L~l  591 (611)
                      ++|++++.  ..+..+++|+.|++++|++++..|  +. .+++|++|++++|++++ +|..+.       .+..+....+
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~~~  412 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI  412 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC-CCBCCCSEEEEECCCBCTTSCBC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh-cCCCCCEEeccCCcccC-CchhhcccceecccccccCCCee
Confidence            99999865  478899999999999999997776  44 49999999999999986 343321       1233344455


Q ss_pred             cCCcCcc----CCCccccccC
Q 047139          592 SHNNLLG----PIPYCVGDFS  608 (611)
Q Consensus       592 s~n~l~g----~iP~~~~~~~  608 (611)
                      +.+.++.    .+|.++.++.
T Consensus       413 ~~~~is~~g~~~~~~~~w~~~  433 (466)
T 1o6v_A          413 APATISDGGSYTEPDITWNLP  433 (466)
T ss_dssp             CCSEESTTCEEETTEEEEECC
T ss_pred             cCceecCCcEEeCCceEECCC
Confidence            5555543    4666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-36  Score=320.33  Aligned_cols=408  Identities=18%  Similarity=0.158  Sum_probs=303.7

Q ss_pred             CCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEE
Q 047139           81 TGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLD  160 (611)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~  160 (611)
                      -.+++.+++++              +.+.+. | .+..+++|++|++++|+++.           +|  ++.+++|++|+
T Consensus        41 l~~L~~L~Ls~--------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-----------~~--~~~l~~L~~L~   91 (457)
T 3bz5_A           41 LATLTSLDCHN--------------SSITDM-T-GIEKLTGLTKLICTSNNITT-----------LD--LSQNTNLTYLA   91 (457)
T ss_dssp             HTTCCEEECCS--------------SCCCCC-T-TGGGCTTCSEEECCSSCCSC-----------CC--CTTCTTCSEEE
T ss_pred             cCCCCEEEccC--------------CCcccC-h-hhcccCCCCEEEccCCcCCe-----------Ec--cccCCCCCEEE
Confidence            35788889888              778764 4 79999999999999887752           33  78899999999


Q ss_pred             ccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEc
Q 047139          161 LSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLEL  240 (611)
Q Consensus       161 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L  240 (611)
                      +++|.+++. |  ++++++|++|++++|++ ++ ++  ++++++|++|++++|.+++. +  ++.++      +|++|++
T Consensus        92 Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l-~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~------~L~~L~l  155 (457)
T 3bz5_A           92 CDSNKLTNL-D--VTPLTKLTYLNCDTNKL-TK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNT------QLTELDC  155 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTTCCEEECCSSCC-SC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCT------TCCEEEC
T ss_pred             CcCCCCcee-e--cCCCCcCCEEECCCCcC-Ce-ec--CCCCCcCCEEECCCCcccee-c--cccCC------cCCEEEC
Confidence            999999964 4  89999999999999994 44 44  89999999999999999985 2  55555      9999999


Q ss_pred             cCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139          241 GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF  320 (611)
Q Consensus       241 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  320 (611)
                      ++|+..+.+  .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++.   .++.+++|++|++++|++++ 
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence            999766666  57889999999999999996 45  88999999999999999875   38899999999999999998 


Q ss_pred             cChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchh
Q 047139          321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSW  400 (611)
Q Consensus       321 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~  400 (611)
                      +|   +..+++|+.|++++|.....      ....+++|+.|+++++              +|+.|++++|.+.+.+|. 
T Consensus       227 ip---~~~l~~L~~L~l~~N~l~~~------~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~-  282 (457)
T 3bz5_A          227 ID---VTPLTQLTYFDCSVNPLTEL------DVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA-  282 (457)
T ss_dssp             CC---CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC-
T ss_pred             cC---ccccCCCCEEEeeCCcCCCc------CHHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc-
Confidence            44   78899999999999654322      1334567777776654              567778888887777773 


Q ss_pred             HHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCC
Q 047139          401 FLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQ  480 (611)
Q Consensus       401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~  480 (611)
                        ..+++|+.|++++|...+.+|..  ...++.+++++|          .++     ++|++++|++++. +  ++++++
T Consensus       283 --~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L~l~~~----------~~L-----~~L~L~~N~l~~l-~--l~~l~~  340 (457)
T 3bz5_A          283 --EGCRKIKELDVTHNTQLYLLDCQ--AAGITELDLSQN----------PKL-----VYLYLNNTELTEL-D--VSHNTK  340 (457)
T ss_dssp             --TTCTTCCCCCCTTCTTCCEEECT--TCCCSCCCCTTC----------TTC-----CEEECTTCCCSCC-C--CTTCTT
T ss_pred             --cccccCCEEECCCCcccceeccC--CCcceEechhhc----------ccC-----CEEECCCCccccc-c--cccCCc
Confidence              23478888888888877777642  235666666655          223     5556699999874 3  888999


Q ss_pred             CCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCC
Q 047139          481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP  560 (611)
Q Consensus       481 L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~  560 (611)
                      |+.|++++|++++                ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.....
T Consensus       341 L~~L~l~~N~l~~----------------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~  399 (457)
T 3bz5_A          341 LKSLSCVNAHIQD----------------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFG  399 (457)
T ss_dssp             CSEEECCSSCCCB----------------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred             CcEEECCCCCCCC----------------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccC
Confidence            9999998887763                23566677888888876     24556778899999999999887665445


Q ss_pred             CCcEEECcCCcCcccCCc--cccCCC-----CCCEeeccCCcCccCCCccccccCC
Q 047139          561 SLSILRLRSNHFNGTIPS--ELCKLS-----ALHILDLSHNNLLGPIPYCVGDFSA  609 (611)
Q Consensus       561 ~L~~L~ls~n~l~~~~p~--~l~~l~-----~L~~L~ls~n~l~g~iP~~~~~~~~  609 (611)
                      ++.....+.+........  .+.+.+     -+.....++|.++|.|++.+.....
T Consensus       400 ~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~  455 (457)
T 3bz5_A          400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQP  455 (457)
T ss_dssp             CCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC----
T ss_pred             ceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccccccc
Confidence            555555444322211110  111111     2333344578999999887665443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.9e-34  Score=302.68  Aligned_cols=344  Identities=30%  Similarity=0.423  Sum_probs=265.3

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL  161 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  161 (611)
                      .+++.+++.+              +++.. +| .+..+++|++|++++|.++           .+|. +.++++|++|++
T Consensus        46 ~~l~~L~l~~--------------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-----------~~~~-~~~l~~L~~L~l   97 (466)
T 1o6v_A           46 DQVTTLQADR--------------LGIKS-ID-GVEYLNNLTQINFSNNQLT-----------DITP-LKNLTKLVDILM   97 (466)
T ss_dssp             HTCCEEECCS--------------SCCCC-CT-TGGGCTTCCEEECCSSCCC-----------CCGG-GTTCTTCCEEEC
T ss_pred             ccccEEecCC--------------CCCcc-Cc-chhhhcCCCEEECCCCccC-----------Cchh-hhccccCCEEEC
Confidence            4678888887              45543 33 4788999999998888765           3344 899999999999


Q ss_pred             cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEcc
Q 047139          162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELG  241 (611)
Q Consensus       162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls  241 (611)
                      ++|.+.+..|  ++++++|++|++++|.+ .+ ++. +.++++|++|++++|.+.+..  .+..++      +|++|+++
T Consensus        98 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l-~~-~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~------~L~~L~l~  164 (466)
T 1o6v_A           98 NNNQIADITP--LANLTNLTGLTLFNNQI-TD-IDP-LKNLTNLNRLELSSNTISDIS--ALSGLT------SLQQLSFG  164 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCC-CC-CGG-GTTCTTCSEEEEEEEEECCCG--GGTTCT------TCSEEEEE
T ss_pred             CCCccccChh--hcCCCCCCEEECCCCCC-CC-ChH-HcCCCCCCEEECCCCccCCCh--hhccCC------cccEeecC
Confidence            9999996544  99999999999999994 44 333 899999999999999988642  366665      99999997


Q ss_pred             CCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccccc
Q 047139          242 YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFI  321 (611)
Q Consensus       242 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  321 (611)
                       +.+.+..  .+.++++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.+. 
T Consensus       165 -~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  236 (466)
T 1o6v_A          165 -NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-  236 (466)
T ss_dssp             -ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             -CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence             5555332  388999999999999998754  348899999999999999987555  77899999999999998763 


Q ss_pred             ChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhH
Q 047139          322 TDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWF  401 (611)
Q Consensus       322 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~  401 (611)
                      +  .+..+++|+.|++++|..                           .+..+  +..+++|++|++++|.+++..+   
T Consensus       237 ~--~l~~l~~L~~L~l~~n~l---------------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~---  282 (466)
T 1o6v_A          237 G--TLASLTNLTDLDLANNQI---------------------------SNLAP--LSGLTKLTELKLGANQISNISP---  282 (466)
T ss_dssp             G--GGGGCTTCSEEECCSSCC---------------------------CCCGG--GTTCTTCSEEECCSSCCCCCGG---
T ss_pred             h--hhhcCCCCCEEECCCCcc---------------------------ccchh--hhcCCCCCEEECCCCccCcccc---
Confidence            2  577788888888887433                           22222  5667778888888887776544   


Q ss_pred             HhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCC
Q 047139          402 LQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQL  481 (611)
Q Consensus       402 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L  481 (611)
                      ...+++|+.|++++|++.+..+  +..                    +.++     ++|++++|.+++..|  +..+++|
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------l~~L-----~~L~L~~n~l~~~~~--~~~l~~L  333 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISN--------------------LKNL-----TYLTLYFNNISDISP--VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGG--------------------CTTC-----SEEECCSSCCSCCGG--GGGCTTC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcC--------------------CCCC-----CEEECcCCcCCCchh--hccCccC
Confidence            2335678888887777764322  110                    1222     444447777776555  6789999


Q ss_pred             CeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          482 LTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       482 ~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      ++|++++|+++++          +.+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       334 ~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          334 QRLFFYNNKVSDV----------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEeECCCCccCCc----------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999999988743          356779999999999999998777  8999999999999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-33  Score=292.12  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=107.6

Q ss_pred             CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      .++++++|+++++.+          +...+..+.++++|++|++++|.+++..+..|+++++|++|++++|. +.+..|.
T Consensus        43 ~l~~l~~l~l~~~~l----------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~  111 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM----------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH  111 (390)
T ss_dssp             GGCCCSEEEEESCEE----------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             ccCCceEEEecCCch----------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence            455566655555544          33333446778888888888888876666678888888888888887 5555566


Q ss_pred             cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL  277 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  277 (611)
                      .++++++|++|++++|.++...+..+..++      +|++|++++|.+++..|..+..+++|++|++++|++++.   .+
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~  182 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTP------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DL  182 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CG
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCC------CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cc
Confidence            677777777777777777654444455555      666666666666655555566666666666666665532   23


Q ss_pred             cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccc
Q 047139          278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE  318 (611)
Q Consensus       278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  318 (611)
                      ..+++|++|++++|.+++.     ...++|++|++++|.+.
T Consensus       183 ~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          183 SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN  218 (390)
T ss_dssp             GGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC
T ss_pred             ccccccceeeccccccccc-----CCCCcceEEECCCCeee
Confidence            4445555555555554421     12234555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=297.62  Aligned_cols=177  Identities=25%  Similarity=0.280  Sum_probs=82.2

Q ss_pred             CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139          155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS  234 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~  234 (611)
                      ++++|++++|++++..|..|.++++|++|++++|. +.+..|..|.++++|++|++++|.+++..+..+..++      +
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~  105 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------N  105 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT------T
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC------C
Confidence            44444444444444444444444444444444444 3333344444444444444444444443333333333      4


Q ss_pred             CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139          235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD  314 (611)
Q Consensus       235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  314 (611)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|+.|++++
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            44444444444444444444555555555555555444444455555555555555555443333444555555555555


Q ss_pred             CccccccChhhhcCCCCCCEEEcCc
Q 047139          315 NQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       315 n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      |.+.+..+. .+..+++|+.|++++
T Consensus       186 n~i~~~~~~-~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          186 LNINAIRDY-SFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCCCEECTT-CSCSCTTCCEEEEEC
T ss_pred             CcCcEeChh-hcccCcccceeeCCC
Confidence            554442222 344444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-33  Score=295.77  Aligned_cols=320  Identities=21%  Similarity=0.216  Sum_probs=218.2

Q ss_pred             CCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139          156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL  235 (611)
Q Consensus       156 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L  235 (611)
                      -+.++.+++.++ .+|..+.  +++++|++++|+ +.+..+..|.++++|++|++++|.+++..|..+..++      +|
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L   82 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF------NL   82 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT------TC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc------cC
Confidence            357788888887 6676554  689999999999 6666778999999999999999999999899998888      99


Q ss_pred             cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139          236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN  315 (611)
Q Consensus       236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  315 (611)
                      ++|++++|++++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            99999999999766677899999999999999999888889999999999999999999888889999999999999999


Q ss_pred             ccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccc
Q 047139          316 QWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD  395 (611)
Q Consensus       316 ~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  395 (611)
                      .+++ ++...+.++++|+.|++++|..   ..                        ..+..+..+++|++|++++|...+
T Consensus       163 ~l~~-~~~~~l~~l~~L~~L~l~~n~i---~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          163 NLTS-IPTEALSHLHGLIVLRLRHLNI---NA------------------------IRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             CCSS-CCHHHHTTCTTCCEEEEESCCC---CE------------------------ECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             cCcc-cChhHhcccCCCcEEeCCCCcC---cE------------------------eChhhcccCcccceeeCCCCcccc
Confidence            9986 4555788888888888888433   22                        222334444555555555555444


Q ss_pred             ccchhHHhcCCCCCEEEccCcccccccC-cccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccc
Q 047139          396 TLPSWFLQLNLTLDELDVGGNHLSGRIP-NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQS  474 (611)
Q Consensus       396 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~  474 (611)
                      .+|...... .+|++|++++|++++ +| ..+.                       .+..|  ++|++++|.+++..+..
T Consensus       215 ~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~-----------------------~l~~L--~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          215 TMTPNCLYG-LNLTSLSITHCNLTA-VPYLAVR-----------------------HLVYL--RFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EECTTTTTT-CCCSEEEEESSCCCS-CCHHHHT-----------------------TCTTC--CEEECCSSCCCEECTTS
T ss_pred             ccCcccccC-ccccEEECcCCcccc-cCHHHhc-----------------------Ccccc--CeeECCCCcCCccChhh
Confidence            444433322 245555555554442 22 1111                       11111  22222444444444444


Q ss_pred             hhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc
Q 047139          475 VGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS  548 (611)
Q Consensus       475 l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  548 (611)
                      |..+++|++|++++|+++.        ..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAV--------VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSE--------ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccccCCEEECCCCccce--------ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            4555555555555544332        22334444555555555555555444444555555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-32  Score=300.47  Aligned_cols=168  Identities=17%  Similarity=0.126  Sum_probs=111.4

Q ss_pred             EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139          136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF  215 (611)
Q Consensus       136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  215 (611)
                      ++++|.+.+..+..+.++++|++|++++|.+++..|..|+.+++|++|++++|. +.+..|..++++++|++|++++|.+
T Consensus        57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  135 (597)
T 3oja_B           57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL  135 (597)
T ss_dssp             EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence            333344444445567788888888888888887777788888888888888888 5666666677788888888888877


Q ss_pred             CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc
Q 047139          216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG  295 (611)
Q Consensus       216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  295 (611)
                      ++..+..+..++      +|++|++++|.+++..|..+..+++|++|++++|.+++.   .++.+++|+.|++++|.+++
T Consensus       136 ~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          136 SSLPRGIFHNTP------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCHHHhccCC------CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence            766555556555      677777777777666666666666777777776666643   13445566666666665543


Q ss_pred             CCCcCCCCCCCCCEEEccCCccc
Q 047139          296 KFPESFGQLSAIRVLELSDNQWE  318 (611)
Q Consensus       296 ~~~~~l~~l~~L~~L~L~~n~l~  318 (611)
                           +...++|+.|++++|.+.
T Consensus       207 -----l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCC
T ss_pred             -----ccCCchhheeeccCCccc
Confidence                 122334555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=5.7e-34  Score=288.32  Aligned_cols=267  Identities=21%  Similarity=0.273  Sum_probs=234.6

Q ss_pred             CCCCHHHHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCcccEEec--------CCCCcEEEEeCCCCCCCCCCcccc
Q 047139           37 SGCKEVEREALLQFKQNL-TDPSGRLSSWV-----GEDCCSWRGVGCN--------NRTGSIIMLNLNNPFRDSFDSYED  102 (611)
Q Consensus        37 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~-----~~~~c~w~gv~c~--------~~~~~v~~l~l~~~~~~~~~~~~~  102 (611)
                      ..+..+|++||++||+++ .+|.+....|.     ..++|.|.|+.|+        ....+|+.|++++           
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----------   90 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----------   90 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----------
Confidence            345678999999999998 47766677882     5678999999995        2347899999998           


Q ss_pred             cccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCE
Q 047139          103 DAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQL  182 (611)
Q Consensus       103 ~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  182 (611)
                         +++. .+|+.++++++|++|++++|.++           .+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus        91 ---n~l~-~lp~~l~~l~~L~~L~L~~n~l~-----------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           91 ---VPLP-QFPDQAFRLSHLQHMTIDAAGLM-----------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             ---SCCS-SCCSCGGGGTTCSEEEEESSCCC-----------CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             ---CCch-hcChhhhhCCCCCEEECCCCCcc-----------chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence               6776 78888999999999888877654           67888999999999999999999 88999999999999


Q ss_pred             EEccCCCCCcccccccCCC---------CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCccc
Q 047139          183 LDLSGNSFLEGQLSRNLGT---------LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL  253 (611)
Q Consensus       183 L~Ls~n~~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l  253 (611)
                      |++++|. ..+.+|..++.         +++|++|++++|.++ .+|..+..++      +|++|++++|.++ .+|..+
T Consensus       155 L~L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~------~L~~L~L~~N~l~-~l~~~l  225 (328)
T 4fcg_A          155 LSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ------NLKSLKIRNSPLS-ALGPAI  225 (328)
T ss_dssp             EEEEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT------TCCEEEEESSCCC-CCCGGG
T ss_pred             EECCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC------CCCEEEccCCCCC-cCchhh
Confidence            9999988 56778877764         999999999999998 7788888887      9999999999999 467789


Q ss_pred             CCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCC
Q 047139          254 GYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE  333 (611)
Q Consensus       254 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  333 (611)
                      ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|. .+..+++|+
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~  304 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANC  304 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTC
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 799999999


Q ss_pred             EEEcCcc
Q 047139          334 ELSLIKT  340 (611)
Q Consensus       334 ~L~l~~~  340 (611)
                      .+++..+
T Consensus       305 ~l~l~~~  311 (328)
T 4fcg_A          305 IILVPPH  311 (328)
T ss_dssp             EEECCGG
T ss_pred             EEeCCHH
Confidence            9998873

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-31  Score=278.10  Aligned_cols=151  Identities=18%  Similarity=0.201  Sum_probs=111.7

Q ss_pred             CCCCCEEEccCCCCCccccccc-CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCC
Q 047139          177 LNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGY  255 (611)
Q Consensus       177 l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~  255 (611)
                      ++++++|++++|.+ . .+|.. +.++++|++|++++|.+++..+..+..++      +|++|++++|.+++..|..+.+
T Consensus        44 l~~l~~l~l~~~~l-~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           44 LNNQKIVTFKNSTM-R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GCCCSEEEEESCEE-S-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCceEEEecCCch-h-hCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcC
Confidence            57889999998873 3 34443 67788888888888888877777777776      8888888888888777777888


Q ss_pred             CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEE
Q 047139          256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL  335 (611)
Q Consensus       256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  335 (611)
                      +++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.    .+..+++|+.|
T Consensus       116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L  191 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA  191 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEE
T ss_pred             CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccccccee
Confidence            88888888888888743333457788888888888888776677777788888888888877653    23445555555


Q ss_pred             EcCc
Q 047139          336 SLIK  339 (611)
Q Consensus       336 ~l~~  339 (611)
                      ++++
T Consensus       192 ~l~~  195 (390)
T 3o6n_A          192 NVSY  195 (390)
T ss_dssp             ECCS
T ss_pred             eccc
Confidence            5555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-31  Score=291.10  Aligned_cols=311  Identities=19%  Similarity=0.184  Sum_probs=187.9

Q ss_pred             CCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC
Q 047139          177 LNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL  256 (611)
Q Consensus       177 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l  256 (611)
                      +.+++.+++++|. +....+..+.++++|++|++++|.+++..+..++.++      +|++|++++|.+++..|..|+.+
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCC
Confidence            4677888888776 3332233355667777777777776666665666555      66666666666665555556666


Q ss_pred             CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139          257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS  336 (611)
Q Consensus       257 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  336 (611)
                      ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+.+. +              
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--------------  187 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--------------  187 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--------------
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--------------
Confidence            6666666666666643333345666666666666666655555555666666666665554431 0              


Q ss_pred             cCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCc
Q 047139          337 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGN  416 (611)
Q Consensus       337 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n  416 (611)
                                                              +..+++|+.|++++|.+++..      ..++|+.|++++|
T Consensus       188 ----------------------------------------~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n  221 (597)
T 3oja_B          188 ----------------------------------------LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHN  221 (597)
T ss_dssp             ----------------------------------------GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSS
T ss_pred             ----------------------------------------hhhhhhhhhhhcccCcccccc------CCchhheeeccCC
Confidence                                                    223456777777777776432      1246777777777


Q ss_pred             ccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCC
Q 047139          417 HLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN  496 (611)
Q Consensus       417 ~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~  496 (611)
                      .+....+                       ....++     +.|++++|.+++  +..+..+++|++|++++|.++    
T Consensus       222 ~l~~~~~-----------------------~~~~~L-----~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~----  267 (597)
T 3oja_B          222 SINVVRG-----------------------PVNVEL-----TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE----  267 (597)
T ss_dssp             CCCEEEC-----------------------SCCSCC-----CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC----
T ss_pred             ccccccc-----------------------ccCCCC-----CEEECCCCCCCC--ChhhccCCCCCEEECCCCccC----
Confidence            6653221                       111222     333336666654  345666777777776665543    


Q ss_pred             CcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccC
Q 047139          497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI  576 (611)
Q Consensus       497 n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~  576 (611)
                          +.+|..++.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|.++.. +++|++|++++|++++. 
T Consensus       268 ----~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~-  339 (597)
T 3oja_B          268 ----KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-  339 (597)
T ss_dssp             ----EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-
T ss_pred             ----CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCccccc-CCCCCEEECCCCCCCCc-
Confidence                3445666667777777777777764 4555666677777777777776 56666654 67777777777777643 


Q ss_pred             CccccCCCCCCEeeccCCcCccC
Q 047139          577 PSELCKLSALHILDLSHNNLLGP  599 (611)
Q Consensus       577 p~~l~~l~~L~~L~ls~n~l~g~  599 (611)
                      |  +..+++|+.|++++|++.+.
T Consensus       340 ~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          340 K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             C--CCTTCCCSEEECCSSCEEHH
T ss_pred             C--hhhcCCCCEEEeeCCCCCCh
Confidence            2  45566777777777776643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-30  Score=266.97  Aligned_cols=307  Identities=27%  Similarity=0.387  Sum_probs=173.0

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +..+++|++|+++++.+. .+| .+..+++|++|++++|.+ .+ ++. +.++++|++|++++|.++..  ..+..++  
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i-~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~--  110 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQI-TD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLT--  110 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT--
T ss_pred             chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcc-cc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCC--
Confidence            456777888888887776 344 367777777777777773 32 333 66667777777766666542  1233333  


Q ss_pred             CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139          230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV  309 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  309 (611)
                          +|++|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++
T Consensus       111 ----~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          111 ----NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             ----TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             ----cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence                555555555555422 22 44445555555554433322222 4444444444444444332111  333333333


Q ss_pred             EEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEcc
Q 047139          310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN  389 (611)
Q Consensus       310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  389 (611)
                      |++++|.+.+.                                                     +. +..+++|+.++++
T Consensus       182 L~l~~n~l~~~-----------------------------------------------------~~-~~~l~~L~~L~l~  207 (347)
T 4fmz_A          182 LSLNYNQIEDI-----------------------------------------------------SP-LASLTSLHYFTAY  207 (347)
T ss_dssp             EECTTSCCCCC-----------------------------------------------------GG-GGGCTTCCEEECC
T ss_pred             EEccCCccccc-----------------------------------------------------cc-ccCCCccceeecc
Confidence            33333333221                                                     00 2233344444444


Q ss_pred             CcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec
Q 047139          390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING  469 (611)
Q Consensus       390 ~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~  469 (611)
                      +|.+.+..+   ...+++|++|++                                                 ++|.+++
T Consensus       208 ~n~l~~~~~---~~~~~~L~~L~l-------------------------------------------------~~n~l~~  235 (347)
T 4fmz_A          208 VNQITDITP---VANMTRLNSLKI-------------------------------------------------GNNKITD  235 (347)
T ss_dssp             SSCCCCCGG---GGGCTTCCEEEC-------------------------------------------------CSSCCCC
T ss_pred             cCCCCCCch---hhcCCcCCEEEc-------------------------------------------------cCCccCC
Confidence            444432222   111233333333                                                 3444332


Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      ..+  +..+++|++|++++|.++++          +.+..+++|++|++++|++++.  +.+..+++|+.|++++|++++
T Consensus       236 ~~~--~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          236 LSP--LANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred             Ccc--hhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence            222  56677778888877776532          2345577888888888888753  357788888888888888887


Q ss_pred             cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139          550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      ..|..+.. +++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       302 ~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 EDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGHHHHHT-CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cChhHhhc-cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77776665 8888888888888886655  777888888888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.1e-30  Score=266.96  Aligned_cols=308  Identities=24%  Similarity=0.337  Sum_probs=226.5

Q ss_pred             cccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccc
Q 047139          115 SLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ  194 (611)
Q Consensus       115 ~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~  194 (611)
                      .+..+++|++|+++++.++           .+| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+ .. 
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-----------~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i-~~-  102 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-----------SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKI-TD-  102 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-----------CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CC-
T ss_pred             cchhcccccEEEEeCCccc-----------cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcc-cC-
Confidence            3567888999888888765           344 38889999999999999985 444 99999999999999995 33 


Q ss_pred             ccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC
Q 047139          195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP  274 (611)
Q Consensus       195 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  274 (611)
                      + ..+.++++|++|++++|.+.+..+  +..++      +|++|++++|.....++ .+..+++|++|++++|.+.+..+
T Consensus       103 ~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~------~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A          103 I-SALQNLTNLRELYLNEDNISDISP--LANLT------KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             C-GGGTTCTTCSEEECTTSCCCCCGG--GTTCT------TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             c-hHHcCCCcCCEEECcCCcccCchh--hccCC------ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence            3 469999999999999999987544  66666      99999999997764544 48999999999999999885433


Q ss_pred             CCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCC
Q 047139          275 PSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWI  354 (611)
Q Consensus       275 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  354 (611)
                        +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+   +..+++|++|++++               
T Consensus       173 --~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~---------------  230 (347)
T 4fmz_A          173 --IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN---------------  230 (347)
T ss_dssp             --GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS---------------
T ss_pred             --hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC---------------
Confidence              88999999999999999853 33 7888999999999998765322   45555555555555               


Q ss_pred             CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceE
Q 047139          355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV  434 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l  434 (611)
                                                          |++++..+   ...+++|++|++++|.++               
T Consensus       231 ------------------------------------n~l~~~~~---~~~l~~L~~L~l~~n~l~---------------  256 (347)
T 4fmz_A          231 ------------------------------------NKITDLSP---LANLSQLTWLEIGTNQIS---------------  256 (347)
T ss_dssp             ------------------------------------SCCCCCGG---GTTCTTCCEEECCSSCCC---------------
T ss_pred             ------------------------------------CccCCCcc---hhcCCCCCEEECCCCccC---------------
Confidence                                                33332111   111234444444444332               


Q ss_pred             EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCC
Q 047139          435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR  514 (611)
Q Consensus       435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~  514 (611)
                                                        +.  ..+..+++|++|++++|+++++          +.+..+++|+
T Consensus       257 ----------------------------------~~--~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~  290 (347)
T 4fmz_A          257 ----------------------------------DI--NAVKDLTKLKMLNVGSNQISDI----------SVLNNLSQLN  290 (347)
T ss_dssp             ----------------------------------CC--GGGTTCTTCCEEECCSSCCCCC----------GGGGGCTTCS
T ss_pred             ----------------------------------CC--hhHhcCCCcCEEEccCCccCCC----------hhhcCCCCCC
Confidence                                              11  2345567777777777776633          2345577888


Q ss_pred             EEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139          515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       515 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      +|++++|++++..|..+..+++|++|++++|++++..|  +. .+++|++|++++|+++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA-SLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG-GCTTCSEESSSCC---
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh-hhhccceeehhhhccc
Confidence            88888888888888888888888888888888886555  44 3888888888888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-31  Score=269.80  Aligned_cols=248  Identities=24%  Similarity=0.332  Sum_probs=185.1

Q ss_pred             CCCeEEccCCcCcc--CCCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCE
Q 047139          131 NFKVLDLSNNGFNS--TLPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT  207 (611)
Q Consensus       131 ~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  207 (611)
                      ++++|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|. +.+.+|..++++++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCE
Confidence            34566666777777  7888888888888888884 88888888888888888888888888 56678888888888888


Q ss_pred             EEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCC-CCcEEEccCCcccccCCCCccCcccCceE
Q 047139          208 LKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK-NLRYLELWYNSFLGSIPPSLGNLTFLEEL  286 (611)
Q Consensus       208 L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  286 (611)
                      |++++|.+++.+|..+..++      +|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             EeCCCCccCCcCChHHhcCC------CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            88888888888888888777      888888888888888888888887 888888888888888888887776 8888


Q ss_pred             EecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecc
Q 047139          287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY  366 (611)
Q Consensus       287 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  366 (611)
                      ++++|.+++..|..+..+++|++|++++|.+.+.++.  +..+++|+                           +|++++
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~---------------------------~L~Ls~  253 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLN---------------------------GLDLRN  253 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCC---------------------------EEECCS
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCC---------------------------EEECcC
Confidence            8888888887888888888888888888877654433  33333333                           333333


Q ss_pred             cccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcc
Q 047139          367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH  417 (611)
Q Consensus       367 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~  417 (611)
                      |.+.+.+|.++..+++|++|++++|+++|.+|..  ..+++|+.+++++|.
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            4445556666666666666666666666666654  223455666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.6e-33  Score=296.29  Aligned_cols=386  Identities=19%  Similarity=0.125  Sum_probs=183.0

Q ss_pred             CCCEEEccCCCCCCCCCcc-CCCCCCCCEEEccCCCCCc---ccccccCCCCCCCCEEEcccccCCCccchhhhc-Cccc
Q 047139          155 NLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG-LSEC  229 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~~  229 (611)
                      +|++|++++|+++...... +..+++|++|++++|.+..   ..++..+..+++|++|++++|.++...+..+.. +.. 
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT-   82 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh-
Confidence            3444444444443221111 3444445555555544211   023344444555555555555544333322221 110 


Q ss_pred             CCCCCCcEEEccCCCCCc----cCCcccCCCCCCcEEEccCCcccccCCCCcc-----CcccCceEEecCCccccCC---
Q 047139          230 INSSSLARLELGYNQLTG----NLPISLGYLKNLRYLELWYNSFLGSIPPSLG-----NLTFLEELYLTSNQMNGKF---  297 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~---  297 (611)
                       ..++|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..   
T Consensus        83 -~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           83 -PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             -TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             -CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence             00135566666655552    3455556666666666666665543222221     2345666666666655422   


Q ss_pred             -CcCCCCCCCCCEEEccCCccccccChhhhc----CCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCc-
Q 047139          298 -PESFGQLSAIRVLELSDNQWEGFITDAHLR----NLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP-  371 (611)
Q Consensus       298 -~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-  371 (611)
                       +..+..+++|++|++++|.+.+..+.....    ..++|++|++++                           |.+++ 
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~---------------------------n~l~~~  214 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES---------------------------CGVTSD  214 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT---------------------------SCCBTT
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC---------------------------CCCcHH
Confidence             333444566666666666654432221111    233444444444                           32332 


Q ss_pred             ---ccchhccCCCCCCEEEccCcccccccchhHHh----cCCCCCEEEccCcccccc----cCccccc-CCCceEEccCC
Q 047139          372 ---KFPTWLRNQTELTTLVLNSASISDTLPSWFLQ----LNLTLDELDVGGNHLSGR----IPNTLVF-RFPGSVDLSSN  439 (611)
Q Consensus       372 ---~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~----~~~~L~~L~ls~n~l~~~----~~~~~~~-~~l~~l~ls~n  439 (611)
                         .++..+..+++|++|++++|.+++.....+..    ..++|++|++++|++++.    ++..+.. ..++.|++   
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L---  291 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL---  291 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC---
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC---
Confidence               23455555666666666666665433222221    235566666666655532    2222211 12333333   


Q ss_pred             cccccCCCCCCCcceeecCcccCCCCeeecccccchhc-----cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCC
Q 047139          440 RFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGN-----LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR  514 (611)
Q Consensus       440 ~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~  514 (611)
                                             ++|.+.+..+..+..     .++|++|++++|.+++...    ..+|..+..+++|+
T Consensus       292 -----------------------s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~  344 (461)
T 1z7x_W          292 -----------------------AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC----SHFSSVLAQNRFLL  344 (461)
T ss_dssp             -----------------------TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----HHHHHHHHHCSSCC
T ss_pred             -----------------------CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH----HHHHHHHhhCCCcc
Confidence                                   444443332222222     2466666666665542110    12344555566677


Q ss_pred             EEECcCCcccccCcccccC-----CCCCCEEECCCCcCcc----cChhHHhhcCCCCcEEECcCCcCcccCCcccc----
Q 047139          515 FLVLSNNHLSGEIPPSLKN-----CSLMDSLDLGENQLSG----NIPAWIGESMPSLSILRLRSNHFNGTIPSELC----  581 (611)
Q Consensus       515 ~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~----  581 (611)
                      +|++++|.+++..+..+..     .++|++|++++|++++    .+|..+.. +++|++|++++|++++.-...+.    
T Consensus       345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~l~~~l~  423 (461)
T 1z7x_W          345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQLVESVR  423 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHHHHHHhc
Confidence            7777777666544433332     5567777777777665    55665554 67777777777776643111111    


Q ss_pred             -CCCCCCEeeccCCcCccCC
Q 047139          582 -KLSALHILDLSHNNLLGPI  600 (611)
Q Consensus       582 -~l~~L~~L~ls~n~l~g~i  600 (611)
                       ....|+.|++.++......
T Consensus       424 ~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          424 QPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             STTCCCCEEECTTCCCCHHH
T ss_pred             cCCcchhheeecccccCHHH
Confidence             1234555555555554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.8e-34  Score=302.26  Aligned_cols=364  Identities=20%  Similarity=0.192  Sum_probs=211.0

Q ss_pred             CCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc----cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc
Q 047139          178 NSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE----VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL  253 (611)
Q Consensus       178 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l  253 (611)
                      ++|++|++++|++........+..+++|++|++++|.++..    ++..+..++      +|++|++++|.+++..+..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP------ALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT------TCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCC------CcCEEeCCCCcCChHHHHHH
Confidence            45677777777742222233355667777777777776643    233444444      66666666666654333222


Q ss_pred             C-CCC----CCcEEEccCCcccc----cCCCCccCcccCceEEecCCccccCCCcC-----CCCCCCCCEEEccCCcccc
Q 047139          254 G-YLK----NLRYLELWYNSFLG----SIPPSLGNLTFLEELYLTSNQMNGKFPES-----FGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       254 ~-~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~  319 (611)
                      . .++    +|++|++++|.++.    .+|..+..+++|++|++++|.+++..+..     ....++|++|++++|.+++
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            1 222    46666666665552    23444555555555555555554322211     1123345555555555443


Q ss_pred             ccC---hhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc-----CCCCCCEEEccCc
Q 047139          320 FIT---DAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR-----NQTELTTLVLNSA  391 (611)
Q Consensus       320 ~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~n  391 (611)
                      ...   ...+..+++|++|++++                           |.+.+..+..+.     ..++|++|++++|
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~---------------------------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSN---------------------------NDINEAGVRVLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCS---------------------------SBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             HHHHHHHHHHhhCCCCCEEECcC---------------------------CCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence            211   01233334444444443                           222221111111     2345666666666


Q ss_pred             ccccc----cchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCee
Q 047139          392 SISDT----LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI  467 (611)
Q Consensus       392 ~l~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l  467 (611)
                      .+++.    ++..+.. +++|++|++++|++.+.....+.                  +.......  .+++|++++|.+
T Consensus       210 ~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~------------------~~~~~~~~--~L~~L~L~~n~l  268 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELC------------------PGLLHPSS--RLRTLWIWECGI  268 (461)
T ss_dssp             CCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHH------------------HHHTSTTC--CCCEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHH------------------HHHhcCCC--CceEEECcCCCC
Confidence            55543    2333332 34555555555555432111110                  00011112  225555588888


Q ss_pred             ecc----cccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCccccc----CcccccCCCCCC
Q 047139          468 NGS----IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSGE----IPPSLKNCSLMD  538 (611)
Q Consensus       468 ~~~----~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~  538 (611)
                      ++.    ++..+..+++|++|++++|.+++.....+.    ..+. ..++|++|++++|.+++.    ++..+..+++|+
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  344 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL  344 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH----HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence            764    677788899999999999977532211111    1111 236999999999999875    567788899999


Q ss_pred             EEECCCCcCcccChhHHhhc----CCCCcEEECcCCcCcc----cCCccccCCCCCCEeeccCCcCccC
Q 047139          539 SLDLGENQLSGNIPAWIGES----MPSLSILRLRSNHFNG----TIPSELCKLSALHILDLSHNNLLGP  599 (611)
Q Consensus       539 ~L~Ls~N~l~~~ip~~l~~~----l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~g~  599 (611)
                      +|++++|++++..+..+...    .++|++|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            99999999997767666542    5699999999999997    7898999999999999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=4.7e-33  Score=305.87  Aligned_cols=432  Identities=14%  Similarity=0.031  Sum_probs=282.2

Q ss_pred             CccccCCCCCCEEECCCCCCCeEEccCCcCccCCCcc------------ccCCCCCCEEEccCCCCCCCCCccCCCC-C-
Q 047139          113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHW------------LFNITNLLSLDLSSNDLQGDIPDGFSSL-N-  178 (611)
Q Consensus       113 ~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~------------l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~-  178 (611)
                      +..+..+++|++|+++++...    .  . .+.+|..            ...+++|++|++++|.+++..+..+... + 
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~----~--~-~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  138 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRA----A--M-FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD  138 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGG----G--G-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGG
T ss_pred             HHHHHhCCCCeEEEecCCcch----h--h-cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccc
Confidence            345667888999998775321    0  0 0122222            2278999999999998876666666653 3 


Q ss_pred             CCCEEEccCCCCCc-ccccccCCCCCCCCEEEcccccCCCccc----hhhhcCcccCCCCCCcEEEccCCCCC----ccC
Q 047139          179 SLQLLDLSGNSFLE-GQLSRNLGTLCNLQTLKLSLNQFSGEVS----DFIDGLSECINSSSLARLELGYNQLT----GNL  249 (611)
Q Consensus       179 ~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~~~~~~~L~~L~Ls~n~l~----~~~  249 (611)
                      +|++|++++|.... ..++....++++|++|++++|.+++...    .....++      +|++|++++|.++    +.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~------~L~~L~L~~n~~~~~~~~~l  212 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT------SLEVLNFYMTEFAKISPKDL  212 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC------CCCEEECTTCCCSSCCHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC------CccEEEeeccCCCccCHHHH
Confidence            49999999886211 2233334578999999999998876633    3444455      8999999999987    344


Q ss_pred             CcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc---cCCCcCCCCCCCCCEEEccCCccccccChhhh
Q 047139          250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN---GKFPESFGQLSAIRVLELSDNQWEGFITDAHL  326 (611)
Q Consensus       250 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  326 (611)
                      +..+..+++|++|++++|.+.+ +|..+..+++|++|+++.....   +..+..+..+++|+.++++++.. +.++. .+
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~-~~  289 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPI-LF  289 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGG-GG
T ss_pred             HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHH-HH
Confidence            5556678999999999998875 6677888899999999864332   23445677888999999887533 33444 67


Q ss_pred             cCCCCCCEEEcCccCCCCceeecc-CCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccC-----------cccc
Q 047139          327 RNLTSLEELSLIKTSNSSLSFNIS-FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNS-----------ASIS  394 (611)
Q Consensus       327 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~-----------n~l~  394 (611)
                      ..+++|++|++++|.   +..... .....+++|+.|++.++...+.++.....+++|++|++++           +.++
T Consensus       290 ~~~~~L~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          290 PFAAQIRKLDLLYAL---LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             GGGGGCCEEEETTCC---CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             hhcCCCcEEecCCCc---CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence            778888888888854   222111 1134456777777774433334455556677777777773           4555


Q ss_pred             cccchhHHhcCCCCCEEEccCcccccccCccccc--CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecc--
Q 047139          395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF--RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS--  470 (611)
Q Consensus       395 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~--  470 (611)
                      +.....+...+++|++|+++.|++++..+..+..  ..++.++++++                     + ..|.+++.  
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~---------------------~-~~n~l~~~p~  424 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL---------------------D-REERITDLPL  424 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC---------------------S-CCSCCSSCCC
T ss_pred             HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec---------------------C-CCccccCchH
Confidence            5444444444577777777777776554444332  13444444311                     1 24444432  


Q ss_pred             ---cccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCcccc-cCcccccCCCCCCEEECCCC
Q 047139          471 ---IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSG-EIPPSLKNCSLMDSLDLGEN  545 (611)
Q Consensus       471 ---~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N  545 (611)
                         ++..+..+++|++|++++|.      +.+++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~------~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQ------GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCG------GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             HHHHHHHHHhCCCCCEEEEecCC------CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence               44446778899999997653      122333333333 37889999999999886 34556678899999999999


Q ss_pred             cCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-CCCCCCEeec
Q 047139          546 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-KLSALHILDL  591 (611)
Q Consensus       546 ~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~l  591 (611)
                      .+++..+..+...+++|++|++++|++++.-...+. .++.+.+..+
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI  545 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence            988765555555589999999999998865443333 4555544433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.5e-29  Score=252.18  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=38.5

Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc--ccCcccccCCCCCCEEECCCCc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSLMDSLDLGENQ  546 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~  546 (611)
                      .+|..+..+++|++|++++|+++.+..+.|.+..+.  ....+|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC--SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecChhhhcCccCCEEECCCCCCCccChhHccccccc--cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            344445555666666666666655554444432211  11345666666666655  4455556666666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.5e-28  Score=247.63  Aligned_cols=149  Identities=24%  Similarity=0.296  Sum_probs=75.6

Q ss_pred             CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139          155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS  234 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~  234 (611)
                      +++.++++++.++ .+|..+.  +++++|++++|. +++..+..++++++|++|++++|.+++..|..+..++      +
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~  101 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV------K  101 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT------T
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC------C
Confidence            5677777777666 4555443  466666666666 3444444566666666666666666555555555444      5


Q ss_pred             CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc--CCCcCCCCCCCCCEEEc
Q 047139          235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG--KFPESFGQLSAIRVLEL  312 (611)
Q Consensus       235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L  312 (611)
                      |++|++++|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            555555555554 3333332  344555555544443333334444444444444444421  23333333444444444


Q ss_pred             cCCc
Q 047139          313 SDNQ  316 (611)
Q Consensus       313 ~~n~  316 (611)
                      ++|.
T Consensus       179 ~~n~  182 (330)
T 1xku_A          179 ADTN  182 (330)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            4433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.1e-28  Score=250.55  Aligned_cols=289  Identities=18%  Similarity=0.208  Sum_probs=184.5

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +++.++++++.++ .+|..+.  +++++|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4566666666555 4444432  455666666666555445555556666666666665555555555555556666665


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI  393 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  393 (611)
                      +|.+.. +|.                            ...  .+|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       111 ~n~l~~-l~~----------------------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          111 KNHLVE-IPP----------------------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             SSCCCS-CCS----------------------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCcCCc-cCc----------------------------ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            555542 222                            111  3455555555555555555566677777777777766


Q ss_pred             cc--ccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccc
Q 047139          394 SD--TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI  471 (611)
Q Consensus       394 ~~--~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~  471 (611)
                      +.  ..|..+...  +|++|++++|                       ++++ +|..+.  .  .+++|++++|.+++..
T Consensus       160 ~~~~~~~~~~~~l--~L~~L~l~~n-----------------------~l~~-l~~~~~--~--~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          160 ENSGFEPGAFDGL--KLNYLRISEA-----------------------KLTG-IPKDLP--E--TLNELHLDHNKIQAIE  209 (332)
T ss_dssp             BGGGSCTTSSCSC--CCSCCBCCSS-----------------------BCSS-CCSSSC--S--SCSCCBCCSSCCCCCC
T ss_pred             ccCCCCcccccCC--ccCEEECcCC-----------------------CCCc-cCcccc--C--CCCEEECCCCcCCccC
Confidence            42  233322221  4444444444                       4443 222221  1  2356666999998888


Q ss_pred             ccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccC
Q 047139          472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI  551 (611)
Q Consensus       472 ~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  551 (611)
                      +..+..+++|++|++++|+++.+.        |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence            888999999999999988776433        345666889999999999998 78888999999999999999998544


Q ss_pred             hhHHhhc-----CCCCcEEECcCCcCc--ccCCccccCCCCCCEeeccCCc
Q 047139          552 PAWIGES-----MPSLSILRLRSNHFN--GTIPSELCKLSALHILDLSHNN  595 (611)
Q Consensus       552 p~~l~~~-----l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~ls~n~  595 (611)
                      +..+...     .++|+.|++++|++.  +..|..+..++.|+.+++++|+
T Consensus       281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            4333221     367899999999987  6677888899999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.7e-28  Score=243.71  Aligned_cols=263  Identities=25%  Similarity=0.274  Sum_probs=178.9

Q ss_pred             EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139          136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF  215 (611)
Q Consensus       136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  215 (611)
                      ++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|++ + .+|..+.  ++|++|++++|.+
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~-~l~~~~~--~~L~~L~l~~n~l  133 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K-ELPEKMP--KTLQELRVHENEI  133 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-S-BCCSSCC--TTCCEEECCSSCC
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-C-ccChhhc--ccccEEECCCCcc
Confidence            3333444555566788888888888888888877788888888888888888884 3 4665554  6888888888888


Q ss_pred             CCccchhhhcCcccCCCCCCcEEEccCCCCCc--cCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcc
Q 047139          216 SGEVSDFIDGLSECINSSSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM  293 (611)
Q Consensus       216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  293 (611)
                      ++..+..+..++      +|++|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+
T Consensus       134 ~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          134 TKVRKSVFNGLN------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CBBCHHHHTTCT------TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred             cccCHhHhcCCc------cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence            887777777777      88888888888853  66777788888888888888877 4565544  7788888888888


Q ss_pred             ccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCccc
Q 047139          294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF  373 (611)
Q Consensus       294 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  373 (611)
                      ++..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|..                           . .+
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---------------------------~-~l  255 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKL---------------------------V-KV  255 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCC---------------------------S-SC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcC---------------------------c-cC
Confidence            877777788888888888888888775443 577777777777777433                           2 34


Q ss_pred             chhccCCCCCCEEEccCcccccccchhHHhc-----CCCCCEEEccCccccc--ccCcccccC-CCceEEccCCc
Q 047139          374 PTWLRNQTELTTLVLNSASISDTLPSWFLQL-----NLTLDELDVGGNHLSG--RIPNTLVFR-FPGSVDLSSNR  440 (611)
Q Consensus       374 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~~L~~L~ls~n~l~~--~~~~~~~~~-~l~~l~ls~n~  440 (611)
                      |.++..+++|++|++++|++++..+..+...     .+.++.+++++|.+..  ..|..+... .++.+++++|+
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            4445555555566666555554333332211     2456666666666542  222222222 56666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.8e-31  Score=289.90  Aligned_cols=425  Identities=15%  Similarity=0.101  Sum_probs=239.9

Q ss_pred             CCCccccCCCCCCEEEccCCCCC---CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccch
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQ---GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSD  221 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~---~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  221 (611)
                      ..+..+..+++|++|+++++...   +.+|..++..             ....++....++++|++|++++|.+++..+.
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~-------------~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~  130 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY-------------VTPWVTEISNNLRQLKSVHFRRMIVSDLDLD  130 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB-------------CHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhccccccccccc-------------chHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence            34455677888888888776421   2333333210             0000111112344555555555544444333


Q ss_pred             hhhcC-cccCCCCCCcEEEccCCC-CCc-cCCcccCCCCCCcEEEccCCcccccC----CCCccCcccCceEEecCCccc
Q 047139          222 FIDGL-SECINSSSLARLELGYNQ-LTG-NLPISLGYLKNLRYLELWYNSFLGSI----PPSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       222 ~l~~l-~~~~~~~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~  294 (611)
                      .+... +     ++|++|++++|. ++. .++.....+++|++|++++|.+++..    +..+..+++|++|++++|.++
T Consensus       131 ~l~~~~~-----~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~  205 (592)
T 3ogk_B          131 RLAKARA-----DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA  205 (592)
T ss_dssp             HHHHHHG-----GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred             HHHHhcc-----ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence            33331 1     025555555544 110 11112224555555555555554331    112234455666666655554


Q ss_pred             ----cCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccC
Q 047139          295 ----GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG  370 (611)
Q Consensus       295 ----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  370 (611)
                          +.++..+.++++|++|++++|.+.+ ++. .+..+++|++|+++.................+.+|+.++++++ ..
T Consensus       206 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~  282 (592)
T 3ogk_B          206 KISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GP  282 (592)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CT
T ss_pred             ccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-ch
Confidence                1223333455666666666665554 232 4556666666666542111111222233444556666666654 23


Q ss_pred             cccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCccccc-ccCcccc-cCCCceEEccC----------
Q 047139          371 PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG-RIPNTLV-FRFPGSVDLSS----------  438 (611)
Q Consensus       371 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~-~~~l~~l~ls~----------  438 (611)
                      ..+|..+..+++|++|++++|.+++.....+...+++|++|+++ +.+.. .++.... ...++.|++++          
T Consensus       283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~  361 (592)
T 3ogk_B          283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE  361 (592)
T ss_dssp             TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred             hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence            45666666677777777777776655444444455677777777 33332 2222222 22577777772          


Q ss_pred             -CcccccCC----CCCCCcceeecCcccCCCCeeecccccchhc-cCCCCeEECcC----CCCCCCCCCcccccCccccc
Q 047139          439 -NRFEGPIP----LWSSNLTKLYLRDLDISFNSINGSIPQSVGN-LKQLLTLVISN----NNLSDMTNNNFSGEIPESIG  508 (611)
Q Consensus       439 -n~~~~~~p----~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~----n~i~~l~~n~~~g~ip~~~~  508 (611)
                       |.+++...    ....+++.|     +++.|.+++..+..+.. +++|+.|++++    |.+++...   ...++..+.
T Consensus       362 ~~~~~~~~~~~l~~~~~~L~~L-----~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~---~~~~~~~~~  433 (592)
T 3ogk_B          362 EGLVSQRGLIALAQGCQELEYM-----AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL---DNGVRSLLI  433 (592)
T ss_dssp             TCCCCHHHHHHHHHHCTTCSEE-----EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---HHHHHHHHH
T ss_pred             cCccCHHHHHHHHhhCccCeEE-----EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH---HHHHHHHHH
Confidence             34442211    113344444     44888888877777776 99999999974    34432210   112444566


Q ss_pred             CcCCCCEEECcCCc--ccccCccccc-CCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc-CCccccCCC
Q 047139          509 SLLTIRFLVLSNNH--LSGEIPPSLK-NCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT-IPSELCKLS  584 (611)
Q Consensus       509 ~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~  584 (611)
                      .+++|++|++++|.  +++..+..+. .+++|++|++++|++++.....+...+++|++|++++|++++. ++.....++
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            79999999998654  7766555554 4899999999999998755555555699999999999999865 444456789


Q ss_pred             CCCEeeccCCcCccC
Q 047139          585 ALHILDLSHNNLLGP  599 (611)
Q Consensus       585 ~L~~L~ls~n~l~g~  599 (611)
                      +|++|++++|+++..
T Consensus       514 ~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          514 SLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCCEEEEESCBCCTT
T ss_pred             ccCeeECcCCcCCHH
Confidence            999999999998865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=247.03  Aligned_cols=283  Identities=21%  Similarity=0.196  Sum_probs=204.1

Q ss_pred             CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139          119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN  198 (611)
Q Consensus       119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (611)
                      ++.....+.+++.++           .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|+ +.+..+..
T Consensus        30 C~~~~~c~~~~~~l~-----------~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~   95 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-----------SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS   95 (353)
T ss_dssp             ECTTSEEECCSTTCS-----------SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT
T ss_pred             CCCCeEeeCCCCCcc-----------ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh
Confidence            333444555555554           4565544  588899999988887666688888999999999888 56666777


Q ss_pred             CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCC-cccccCCCC
Q 047139          199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYN-SFLGSIPPS  276 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~  276 (611)
                      ++++++|++|++++|.+++..+..+..++      +|++|++++|++++..+ ..+..+++|++|++++| .+.+..|..
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  169 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLS------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD  169 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCT------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCc------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence            88888999999999988877766677777      89999999998884333 37888899999999988 466556677


Q ss_pred             ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCC
Q 047139          277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP  356 (611)
Q Consensus       277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  356 (611)
                      +.++++|++|++++|.+++..|..+..+++|++|++++|.+.. ++...+..+++|++|++++|................
T Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~  248 (353)
T 2z80_A          170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN  248 (353)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred             ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccccccccccccccc
Confidence            8888999999999999888888888889999999999998854 455466678888888888865533222111112234


Q ss_pred             cceeEEEecccccCc----ccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139          357 FKLRYLVIRYYQLGP----KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP  423 (611)
Q Consensus       357 ~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~  423 (611)
                      ..++.++++++.+.+    .+|.++..+++|++|++++|+++ .+|..++..+++|++|++++|.+.+..|
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            456666676666654    45666777777777777777776 5565544445677777777777665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.3e-28  Score=243.22  Aligned_cols=261  Identities=24%  Similarity=0.206  Sum_probs=191.8

Q ss_pred             CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCC--CCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQG--DIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      ++|++|++++|++          ++..+..+.++++|++|++++|.++.  ..|..+..+++|++|++++|.+ . .+|.
T Consensus        28 ~~l~~L~L~~n~l----------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~-~l~~   95 (306)
T 2z66_A           28 SSATRLELESNKL----------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I-TMSS   95 (306)
T ss_dssp             TTCCEEECCSSCC----------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-E-EEEE
T ss_pred             CCCCEEECCCCcc----------CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-c-cChh
Confidence            4667666666655          33333457899999999999998873  2366677889999999999984 3 4777


Q ss_pred             cCCCCCCCCEEEcccccCCCccc-hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc-cCCC
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG-SIPP  275 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~  275 (611)
                      .+.++++|++|++++|.+++..+ ..+..++      +|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|.
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCT------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhcc------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            78899999999999998887655 5566666      89999999999988888888889999999999998886 5788


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP  355 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  355 (611)
                      .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++                
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~----------------  232 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSL----------------  232 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTT----------------
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCEeECCC----------------
Confidence            888889999999999998887788888888999999999988764443 566666666666665                


Q ss_pred             CcceeEEEecccccCcccchhccCC-CCCCEEEccCcccccccc-hhHHhcCCCCCEEEccCcccccccCccc
Q 047139          356 PFKLRYLVIRYYQLGPKFPTWLRNQ-TELTTLVLNSASISDTLP-SWFLQLNLTLDELDVGGNHLSGRIPNTL  426 (611)
Q Consensus       356 ~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~ls~n~l~~~~~~~~  426 (611)
                                 |.+.+..|..+..+ ++|++|++++|.+++..+ .++..+....+.+.+..+.+....|..+
T Consensus       233 -----------N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          233 -----------NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             -----------SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             -----------CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence                       33455556666666 378888888888876543 2333332333344444555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=241.43  Aligned_cols=286  Identities=20%  Similarity=0.264  Sum_probs=172.3

Q ss_pred             CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCC
Q 047139          152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN  231 (611)
Q Consensus       152 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~  231 (611)
                      .++.....+.+++.++ .+|..+.  ++|++|++++|. +++..+..+.++++|++|++++|.+++..+..+..++    
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----  100 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG----  100 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC----
Confidence            3455566788888877 5666554  478888888887 4444444677777777777777777766666666665    


Q ss_pred             CCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC--CccCcccCceEEecCC-ccccCCCcCCCCCCCCC
Q 047139          232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP--SLGNLTFLEELYLTSN-QMNGKFPESFGQLSAIR  308 (611)
Q Consensus       232 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~  308 (611)
                        +|++|++++|++++..+..+.++++|++|++++|++++ +|.  .+.++++|++|++++| .+.+..+..+.++++|+
T Consensus       101 --~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          101 --SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             --TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             --CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence              77777777777764444446666777777777776663 333  4566666666666666 34444444555555566


Q ss_pred             EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139          309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL  388 (611)
Q Consensus       309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  388 (611)
                      +|++++|.+.+.                                                    .|..+..+++|++|++
T Consensus       178 ~L~l~~n~l~~~----------------------------------------------------~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          178 ELEIDASDLQSY----------------------------------------------------EPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             EEEEEETTCCEE----------------------------------------------------CTTTTTTCSEEEEEEE
T ss_pred             EEECCCCCcCcc----------------------------------------------------CHHHHhccccCCeecC
Confidence            666555555443                                                    3334444555566666


Q ss_pred             cCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee
Q 047139          389 NSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN  468 (611)
Q Consensus       389 ~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~  468 (611)
                      ++|.+. .+|..+....++|+.|++++|++++..+..+..                                        
T Consensus       206 ~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----------------------------------------  244 (353)
T 2z80_A          206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST----------------------------------------  244 (353)
T ss_dssp             ECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------------------
T ss_pred             CCCccc-cchhhhhhhcccccEEECCCCcccccccccccc----------------------------------------
Confidence            666653 455555555577788888777776432221110                                        


Q ss_pred             cccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCccc-ccCCCCCCEEECCCCcC
Q 047139          469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQL  547 (611)
Q Consensus       469 ~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l  547 (611)
                            ....+.++.++++++.++   ++.+. .+|+.+..+++|++|++++|+++ .+|.. +..+++|++|++++|.+
T Consensus       245 ------~~~~~~l~~l~L~~~~l~---~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          245 ------GETNSLIKKFTFRNVKIT---DESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             --------CCCCCCEEEEESCBCC---HHHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ------ccccchhhcccccccccc---Ccchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence                  011223444444444322   22222 35556666777777777777777 44544 57778888888888888


Q ss_pred             cccCh
Q 047139          548 SGNIP  552 (611)
Q Consensus       548 ~~~ip  552 (611)
                      ++..|
T Consensus       314 ~~~~~  318 (353)
T 2z80_A          314 DCSCP  318 (353)
T ss_dssp             CCCHH
T ss_pred             cCcCC
Confidence            76655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6e-27  Score=236.71  Aligned_cols=231  Identities=21%  Similarity=0.309  Sum_probs=170.1

Q ss_pred             CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139          119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN  198 (611)
Q Consensus       119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (611)
                      .+++++|++++|.+          + .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.+ . .+|..
T Consensus        80 ~~~l~~L~L~~n~l----------~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~  145 (328)
T 4fcg_A           80 QPGRVALELRSVPL----------P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-R-ALPAS  145 (328)
T ss_dssp             STTCCEEEEESSCC----------S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGG
T ss_pred             ccceeEEEccCCCc----------h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-c-cCcHH
Confidence            45666666665554          4 67888999999999999999999 8899999999999999999994 4 78989


Q ss_pred             CCCCCCCCEEEcccccCCCccchhhhcCc---ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLS---ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      ++++++|++|++++|++.+.+|..+....   .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|.
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~  223 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP  223 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch
Confidence            99999999999999998888887765400   0011227788888888777 677777777778888888777773 555


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP  355 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  355 (611)
                      .+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|. .+.++++|++|++++                
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~----------------  286 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRG----------------  286 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTT----------------
T ss_pred             hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCC----------------
Confidence            677777777788877777777777777777777777777777666665 355555555554444                


Q ss_pred             CcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139          356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI  393 (611)
Q Consensus       356 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  393 (611)
                                 |.+.+.+|.++..+++|+.+++..+.+
T Consensus       287 -----------n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          287 -----------CVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             -----------CTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             -----------CCchhhccHHHhhccCceEEeCCHHHH
Confidence                       334556666666666666666665544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.4e-26  Score=225.46  Aligned_cols=217  Identities=23%  Similarity=0.192  Sum_probs=149.9

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCCccchhh
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSGEVSDFI  223 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l  223 (611)
                      .+|..+  .++|++|++++|.+++..+..|.++++|++|++++|. +.+..|..+.++++|++|++++|. +....+..+
T Consensus        25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            345433  4688888888888887766778888888888888887 555567778888888888888886 666666667


Q ss_pred             hcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCC
Q 047139          224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQ  303 (611)
Q Consensus       224 ~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  303 (611)
                      ..++      +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..
T Consensus       102 ~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  175 (285)
T 1ozn_A          102 HGLG------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (285)
T ss_dssp             TTCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cCCc------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence            6666      7777777777777666777777777777777777777555556777777777777777777555555777


Q ss_pred             CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139          304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL  383 (611)
Q Consensus       304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  383 (611)
                      +++|++|++++|.+.+..+. .+..+++|+.|++++                           |.+.+..+..+..+++|
T Consensus       176 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~---------------------------n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFA---------------------------NNLSALPTEALAPLRAL  227 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS---------------------------SCCSCCCHHHHTTCTTC
T ss_pred             ccccCEEECCCCcccccCHh-HccCcccccEeeCCC---------------------------CcCCcCCHHHcccCccc
Confidence            77777777777776664443 455555555544444                           33344444556666777


Q ss_pred             CEEEccCcccccccc
Q 047139          384 TTLVLNSASISDTLP  398 (611)
Q Consensus       384 ~~L~l~~n~l~~~~p  398 (611)
                      ++|++++|.+....+
T Consensus       228 ~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          228 QYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CEEECCSSCEECSGG
T ss_pred             CEEeccCCCccCCCC
Confidence            777777776664433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=5.3e-30  Score=281.68  Aligned_cols=438  Identities=15%  Similarity=0.094  Sum_probs=237.4

Q ss_pred             cccCCCCCCEEECCCCCC-CeEEccCCcCccC----CCccccCCCCCCEEEccCCCCCCCCCccCC-CCCCCCEEEccCC
Q 047139          115 SLLQLKDLEYLDLSLNNF-KVLDLSNNGFNST----LPHWLFNITNLLSLDLSSNDLQGDIPDGFS-SLNSLQLLDLSGN  188 (611)
Q Consensus       115 ~l~~l~~L~~L~ls~n~l-~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n  188 (611)
                      .+..+++|++|+++++.. ..+.+....+.+.    ++.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            356678888888877641 1111110000010    112234677888888888887766555554 5788888888887


Q ss_pred             CCCcc-cccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCC--CCcc-CCcccCCCCCCcEEEc
Q 047139          189 SFLEG-QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ--LTGN-LPISLGYLKNLRYLEL  264 (611)
Q Consensus       189 ~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L  264 (611)
                      ..++. .++..+.++++|++|++++|.+++..+..+..+.  ..+++|++|++++|.  ++.. ++..+..+++|++|++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L  218 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL  218 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence            32332 2444445778888888888887766665555433  234478888888876  2211 1222234688888888


Q ss_pred             cCCcccccCCCCccCcccCceEEecCCc-------cccCCCcCCCCCCCCCEE-EccCCccccccChhhhcCCCCCCEEE
Q 047139          265 WYNSFLGSIPPSLGNLTFLEELYLTSNQ-------MNGKFPESFGQLSAIRVL-ELSDNQWEGFITDAHLRNLTSLEELS  336 (611)
Q Consensus       265 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~l~~l~~L~~L~  336 (611)
                      ++|...+.+|..+..+++|++|+++.+.       +.+ ++..+.++++|+.+ .+.+... +.++. .+..+++|++|+
T Consensus       219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~~L~  295 (594)
T 2p1m_B          219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLTTLN  295 (594)
T ss_dssp             CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCCEEE
T ss_pred             CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCCEEE
Confidence            8873333366667777888888755442       222 33356677777777 3333222 22222 344667788888


Q ss_pred             cCccCCCCceeec-cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEcc---------CcccccccchhHHhcCC
Q 047139          337 LIKTSNSSLSFNI-SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN---------SASISDTLPSWFLQLNL  406 (611)
Q Consensus       337 l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~---------~n~l~~~~p~~~~~~~~  406 (611)
                      +++|..   .... ......+++|+.|++.+|.....++.....+++|++|+++         .+.+++.....+...++
T Consensus       296 L~~~~l---~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~  372 (594)
T 2p1m_B          296 LSYATV---QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP  372 (594)
T ss_dssp             CTTCCC---CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred             ccCCCC---CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence            777432   2111 1112345678888887772222333344457888888873         34555555555555567


Q ss_pred             CCCEEEccCcccccccCcccc--cCCCceEEcc--C----CcccccC-----CCCCCCcceeecCcccCCCCeeeccccc
Q 047139          407 TLDELDVGGNHLSGRIPNTLV--FRFPGSVDLS--S----NRFEGPI-----PLWSSNLTKLYLRDLDISFNSINGSIPQ  473 (611)
Q Consensus       407 ~L~~L~ls~n~l~~~~~~~~~--~~~l~~l~ls--~----n~~~~~~-----p~~~~~l~~L~l~~L~Ls~n~l~~~~~~  473 (611)
                      +|++|.++.|.+++.....+.  ...++.++++  +    +.+++..     +..+..+.  .|++|++++ .+++..+.
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~--~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK--DLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT--TCCEEECCS-SCCHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC--CccEEeecC-cccHHHHH
Confidence            888888888877765544443  2367777776  2    2232110     00011111  113333344 44444444


Q ss_pred             chhc-cCCCCeEECcCCCCCCCCCCcccccCcccc-cCcCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcCccc
Q 047139          474 SVGN-LKQLLTLVISNNNLSDMTNNNFSGEIPESI-GSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGN  550 (611)
Q Consensus       474 ~l~~-l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~  550 (611)
                      .+.. +++|++|++++|.+++        ..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|+++..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  521 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSD--------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG  521 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSH--------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred             HHHHhchhccEeeccCCCCcH--------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence            4443 5566666666555431        111111 3355666666666665433322 233455666666666665544


Q ss_pred             ChhHHhhcCCCCcEEECcCCc
Q 047139          551 IPAWIGESMPSLSILRLRSNH  571 (611)
Q Consensus       551 ip~~l~~~l~~L~~L~ls~n~  571 (611)
                      ....+...++.|+...+..+.
T Consensus       522 ~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          522 ACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHHHhCCCCEEEEecCCC
Confidence            444443345555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8.7e-26  Score=239.17  Aligned_cols=214  Identities=27%  Similarity=0.218  Sum_probs=117.9

Q ss_pred             ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139          143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF  222 (611)
Q Consensus       143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  222 (611)
                      ++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|+ +.+..+..+.++++|++|++++|.++...+..
T Consensus        88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  166 (452)
T 3zyi_A           88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA  166 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTT
T ss_pred             ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhH
Confidence            33445555666666666666666665555556666666666666665 33333344555666666666666665555555


Q ss_pred             hhcCcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCC
Q 047139          223 IDGLSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESF  301 (611)
Q Consensus       223 l~~l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  301 (611)
                      +..++      +|++|++++|+ +....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..|..|
T Consensus       167 ~~~l~------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  238 (452)
T 3zyi_A          167 FNRVP------SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSF  238 (452)
T ss_dssp             TTTCT------TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred             HhcCC------cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccc
Confidence            55554      66666666533 332222345556666666666666553 23 35555666666666666665555556


Q ss_pred             CCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEeccccc
Q 047139          302 GQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL  369 (611)
Q Consensus       302 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  369 (611)
                      .++++|++|++++|++.+..+. .+.++++|+.|++++|..   ....+..+..+++|+.|++++|.+
T Consensus       239 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          239 HGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNL---SSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCC---SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcC---CccChHHhccccCCCEEEccCCCc
Confidence            6666666666666666554333 455666666666666332   222222334455666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=4.3e-26  Score=228.65  Aligned_cols=249  Identities=22%  Similarity=0.233  Sum_probs=170.4

Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCc-ccccccCCCCCCCCEEEcccc
Q 047139          135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE-GQLSRNLGTLCNLQTLKLSLN  213 (611)
Q Consensus       135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~l~~n  213 (611)
                      ++.+++.++ .+|..+.  ++|++|++++|.++...+..|+++++|++|++++|.+.. +..+..+..+++|++|++++|
T Consensus        12 l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            333344433 4554432  688888888888885444457888888888888888421 223555667788888888888


Q ss_pred             cCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc
Q 047139          214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ  292 (611)
Q Consensus       214 ~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  292 (611)
                      .+.. +|..+..++      +|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus        89 ~i~~-l~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           89 GVIT-MSSNFLGLE------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             SEEE-EEEEEETCT------TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             cccc-ChhhcCCCC------CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            7764 444455555      77888888877775444 467777777777777777777777777777777777777777


Q ss_pred             ccc-CCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCc
Q 047139          293 MNG-KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP  371 (611)
Q Consensus       293 l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  371 (611)
                      +.+ .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++                           |.+.+
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~---------------------------N~l~~  213 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSH---------------------------NNFFS  213 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTT---------------------------SCCSB
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCC---------------------------CccCc
Confidence            765 4666777777777777777777664443 455555555555555                           33344


Q ss_pred             ccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccc
Q 047139          372 KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR  421 (611)
Q Consensus       372 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~  421 (611)
                      ..+..+..+++|++|++++|++++..|..+....++|++|++++|.+.+.
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            44456677888888888888888777776665545788888888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=222.49  Aligned_cols=215  Identities=25%  Similarity=0.216  Sum_probs=182.1

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      .++.. +|..+  .++|++|++++|++          ++..+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        21 ~~l~~-ip~~~--~~~l~~L~l~~n~i----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           21 QGLQA-VPVGI--PAASQRIFLHGNRI----------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             SCCSS-CCTTC--CTTCSEEECTTSCC----------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccc-CCcCC--CCCceEEEeeCCcC----------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            44543 34433  35666666666555          4555677899999999999999999888999999999999999


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW  265 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  265 (611)
                      ++|..+....|..+.++++|++|++++|.+++..+..+..++      +|++|++++|.+++..+..+..+++|++|+++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc------CCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence            999734555578899999999999999999988888888887      99999999999997777778999999999999


Q ss_pred             CCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139          266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT  340 (611)
Q Consensus       266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~  340 (611)
                      +|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSS
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCC
Confidence            999997666679999999999999999998889999999999999999999987 45557889999999999884

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.8e-25  Score=233.40  Aligned_cols=211  Identities=26%  Similarity=0.261  Sum_probs=101.3

Q ss_pred             CCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhc
Q 047139          146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG  225 (611)
Q Consensus       146 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  225 (611)
                      .+..|.++++|++|+|++|.+++..+..|.++++|++|++++|+ ++...+..+.++++|++|++++|.++...+..+..
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence            33445555555555555555554444455555555555555555 23323334555555555555555555444444444


Q ss_pred             CcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCC
Q 047139          226 LSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL  304 (611)
Q Consensus       226 l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  304 (611)
                      ++      +|++|++++|+ +....+..|.++++|++|++++|.++ .+|. +..+++|++|++++|.+++..|..|.++
T Consensus       159 l~------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          159 IP------SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             CT------TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             Cc------ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccC
Confidence            44      55555555532 22222224445555555555555554 2332 4455555555555555554445555555


Q ss_pred             CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEeccccc
Q 047139          305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL  369 (611)
Q Consensus       305 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  369 (611)
                      ++|++|++++|++.+..+. .+.++++|+.|++++|..   ....+..+..+++|+.|++++|.+
T Consensus       231 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNL---TLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCC---CCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCC---CccChhHhccccCCCEEEcCCCCc
Confidence            5555555555555443332 455555555555555322   222222233344555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.9e-27  Score=238.92  Aligned_cols=248  Identities=19%  Similarity=0.161  Sum_probs=157.5

Q ss_pred             CCeEEccCCcCccCCCccccCCCCCCEEEccCCCC-CCCCCccCC-------CCCCCCEEEccCCCCCcccccccC--CC
Q 047139          132 FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL-QGDIPDGFS-------SLNSLQLLDLSGNSFLEGQLSRNL--GT  201 (611)
Q Consensus       132 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~-~~~~p~~l~-------~l~~L~~L~Ls~n~~~~~~~~~~l--~~  201 (611)
                      ++.|++++|.+  .+|..+...  |++|++++|.+ ...+|..+.       ++++|++|++++|. +++.+|..+  +.
T Consensus        45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~  119 (312)
T 1wwl_A           45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEAT  119 (312)
T ss_dssp             CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCC
T ss_pred             ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhc
Confidence            34444555555  566655544  77788888877 345666555       67888888888888 566777765  78


Q ss_pred             CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccccc--CCCCc--
Q 047139          202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS--IPPSL--  277 (611)
Q Consensus       202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l--  277 (611)
                      +++|++|++++|.+++. |..++.+... ..++|++|++++|++++..|..++.+++|++|++++|++.+.  +|..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQW-LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTT-CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHh-hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            88888888888888877 6666655100 012788888888888877777788888888888888877654  23333  


Q ss_pred             cCcccCceEEecCCcccc--CCC-cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCC
Q 047139          278 GNLTFLEELYLTSNQMNG--KFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWI  354 (611)
Q Consensus       278 ~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  354 (611)
                      ..+++|++|++++|.+++  .++ ..+..+++|++|++++|.+.+..+...+..+++|++|++++|...    .++....
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----~ip~~~~  273 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----QVPKGLP  273 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS----SCCSSCC
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC----hhhhhcc
Confidence            677778888888887763  122 223466777888888777777554435556667777777764432    2222222


Q ss_pred             CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139          355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS  394 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  394 (611)
                        ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence              4555555555555443 33 445555555555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=6.2e-25  Score=215.88  Aligned_cols=219  Identities=27%  Similarity=0.355  Sum_probs=165.7

Q ss_pred             CCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCC
Q 047139           67 EDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTL  146 (611)
Q Consensus        67 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~  146 (611)
                      .++|.|.|+.|.- .+.++.+++++              ++++. +|..+.  +++++|++++|++          ++..
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------------~~l~~-ip~~~~--~~l~~L~l~~n~l----------~~~~   53 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSS--------------KKLTA-IPSNIP--ADTKKLDLQSNKL----------SSLP   53 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTT--------------SCCSS-CCSCCC--TTCSEEECCSSCC----------SCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccC--------------CCCCc-cCCCCC--CCCCEEECcCCCC----------CeeC
Confidence            5899999999963 34556788887              55553 454443  4566665555544          4455


Q ss_pred             CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139          147 PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL  226 (611)
Q Consensus       147 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  226 (611)
                      +..|.++++|++|++++|.++...+..|.++++|++|++++|+ +.+..+..+.++++|++|++++|.+++..+..+..+
T Consensus        54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  132 (270)
T 2o6q_A           54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL  132 (270)
T ss_dssp             TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence            5678888999999999988886555567888889999998888 455555667888888888888888888777777777


Q ss_pred             cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC
Q 047139          227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA  306 (611)
Q Consensus       227 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  306 (611)
                      +      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++
T Consensus       133 ~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          133 T------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             T------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             c------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            6      8888888888888666666788888888888888888666666788888888888888888665566778888


Q ss_pred             CCEEEccCCccccc
Q 047139          307 IRVLELSDNQWEGF  320 (611)
Q Consensus       307 L~~L~L~~n~l~~~  320 (611)
                      |+.|++++|.+...
T Consensus       207 L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          207 LKMLQLQENPWDCT  220 (270)
T ss_dssp             CCEEECCSSCBCCS
T ss_pred             CCEEEecCCCeeCC
Confidence            88888888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.3e-24  Score=236.28  Aligned_cols=266  Identities=24%  Similarity=0.299  Sum_probs=146.9

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4666666666666 5555444  56666666666665 3444   3466666666666665 3443   45666666666


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI  393 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  393 (611)
                      +|.+++ ++.    .+++|+.|++++|..                           .+ +|..   +++|++|++++|++
T Consensus       110 ~N~l~~-l~~----~l~~L~~L~L~~N~l---------------------------~~-lp~~---l~~L~~L~Ls~N~l  153 (622)
T 3g06_A          110 SNPLTH-LPA----LPSGLCKLWIFGNQL---------------------------TS-LPVL---PPGLQELSVSDNQL  153 (622)
T ss_dssp             SCCCCC-CCC----CCTTCCEEECCSSCC---------------------------SC-CCCC---CTTCCEEECCSSCC
T ss_pred             CCcCCC-CCC----CCCCcCEEECCCCCC---------------------------Cc-CCCC---CCCCCEEECcCCcC
Confidence            666654 222    344555555554322                           11 1111   24455555555544


Q ss_pred             ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139          394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ  473 (611)
Q Consensus       394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~  473 (611)
                      ++ +|.    ..++|+.|++++|++++ +|.  ....++.|++++|.+++ +|..+.+++.|++     ++|.++ .+|.
T Consensus       154 ~~-l~~----~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L-----~~N~l~-~l~~  218 (622)
T 3g06_A          154 AS-LPA----LPSELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLAS-LPTLPSELYKLWA-----YNNRLT-SLPA  218 (622)
T ss_dssp             SC-CCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEEC-----CSSCCS-SCCC
T ss_pred             CC-cCC----ccCCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCCC-CCCccchhhEEEC-----cCCccc-ccCC
Confidence            43 222    12355555555555553 331  11245555555555543 3333344444333     666666 3343


Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      .   +++|++|++++|+++.         +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|.
T Consensus       219 ~---~~~L~~L~Ls~N~L~~---------lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          219 L---PSGLKELIVSGNRLTS---------LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             C---CTTCCEEECCSSCCSC---------CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             C---CCCCCEEEccCCccCc---------CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence            2   3667777777776652         33   22456777777777776 4554   4567777777777777 6676


Q ss_pred             HHhhcCCCCcEEECcCCcCcccCCccccC
Q 047139          554 WIGESMPSLSILRLRSNHFNGTIPSELCK  582 (611)
Q Consensus       554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l~~  582 (611)
                      .+.. +++|+.|++++|++++.+|..+..
T Consensus       279 ~l~~-l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          279 SLIH-LSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             GGGG-SCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             HHhh-ccccCEEEecCCCCCCcCHHHHHh
Confidence            6654 777777777777777766665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.7e-28  Score=268.09  Aligned_cols=405  Identities=16%  Similarity=0.096  Sum_probs=234.8

Q ss_pred             cccCCCCCCEEEccCCCCCC---CCCcc------------CCCCCCCCEEEccCCCCCcccccccCC-CCCCCCEEEccc
Q 047139          149 WLFNITNLLSLDLSSNDLQG---DIPDG------------FSSLNSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSL  212 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~---~~p~~------------l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~  212 (611)
                      .+..+++|++|+++++....   ..|..            ...+++|++|++++|. +++..+..+. .+++|++|++++
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCC
Confidence            46778899999999875321   12211            2467899999999998 5655555564 688999999998


Q ss_pred             c-cCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc----CCCCCCcEEEccCCc--cccc-CCCCccCcccC
Q 047139          213 N-QFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL----GYLKNLRYLELWYNS--FLGS-IPPSLGNLTFL  283 (611)
Q Consensus       213 n-~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L  283 (611)
                      | .++.. ++.....++      +|++|++++|.+++..+..+    ..+++|++|++++|.  +... ++..+..+++|
T Consensus       140 ~~~~~~~~l~~~~~~~~------~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L  213 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCR------NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL  213 (594)
T ss_dssp             CEEEEHHHHHHHHHHCT------TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred             cCCCCHHHHHHHHHhCC------CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence            8 44432 333444555      89999999998776544433    367799999999886  2211 11223456899


Q ss_pred             ceEEecCCccccCCCcCCCCCCCCCEEEccCC-------ccccccChhhhcCCCCCCEE-EcCccCCCCceeeccCCCCC
Q 047139          284 EELYLTSNQMNGKFPESFGQLSAIRVLELSDN-------QWEGFITDAHLRNLTSLEEL-SLIKTSNSSLSFNISFDWIP  355 (611)
Q Consensus       284 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-------~l~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~  355 (611)
                      ++|++++|...+.++..+..+++|++|+++.+       .+.+ ++. .+.++++|+.+ .+..    .....++.....
T Consensus       214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~-~l~~~~~L~~Ls~~~~----~~~~~l~~~~~~  287 (594)
T 2p1m_B          214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV-ALSGCKELRCLSGFWD----AVPAYLPAVYSV  287 (594)
T ss_dssp             CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH-HHHTCTTCCEEECCBT----CCGGGGGGGHHH
T ss_pred             cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH-HHhcCCCcccccCCcc----cchhhHHHHHHh
Confidence            99999988333336777778889999986554       3333 233 57888999888 3333    111112222224


Q ss_pred             CcceeEEEecccccCccc-chhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccC---------cccccccCcc
Q 047139          356 PFKLRYLVIRYYQLGPKF-PTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG---------NHLSGRIPNT  425 (611)
Q Consensus       356 ~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~---------n~l~~~~~~~  425 (611)
                      +++|+.|++++|.+.+.. ...+..+++|++|++++| +++.....+...+++|++|++++         +.+++.....
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            567888888887765432 334567788888888877 44444444444457788887743         2333221111


Q ss_pred             cc--cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh-ccCCCCeEECc--C----CCCCCCCC
Q 047139          426 LV--FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG-NLKQLLTLVIS--N----NNLSDMTN  496 (611)
Q Consensus       426 ~~--~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~i~~l~~  496 (611)
                      +.  ...++.+++                          +.|.+++..+..+. .+++|+.|+++  +    +.+++.  
T Consensus       367 l~~~~~~L~~L~~--------------------------~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~--  418 (594)
T 2p1m_B          367 VSMGCPKLESVLY--------------------------FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE--  418 (594)
T ss_dssp             HHHHCTTCCEEEE--------------------------EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC--
T ss_pred             HHHhchhHHHHHH--------------------------hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC--
Confidence            11  113333333                          44555444444443 35666666665  2    222211  


Q ss_pred             CcccccCcccccCcCCCCEEECcCCcccccCcccccC-CCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc
Q 047139          497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKN-CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT  575 (611)
Q Consensus       497 n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~  575 (611)
                       .+...++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|++++|++++.
T Consensus       419 -~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          419 -PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             -CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             -chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence             11112222344455666666655 444444444433 566666666666665555554433466666666666666443


Q ss_pred             CCc-cccCCCCCCEeeccCCcCc
Q 047139          576 IPS-ELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       576 ~p~-~l~~l~~L~~L~ls~n~l~  597 (611)
                      .+. ....+++|++|++++|+++
T Consensus       497 ~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          497 ALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHhCCCCCEEeeeCCCCC
Confidence            332 2233556666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.4e-24  Score=230.85  Aligned_cols=153  Identities=27%  Similarity=0.326  Sum_probs=85.6

Q ss_pred             CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139          121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG  200 (611)
Q Consensus       121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  200 (611)
                      .++.|++++|.++           .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|++ + .+|.   
T Consensus        41 ~l~~L~ls~n~L~-----------~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~lp~---   98 (622)
T 3g06_A           41 GNAVLNVGESGLT-----------TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPV---   98 (622)
T ss_dssp             CCCEEECCSSCCS-----------CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCC-S-CCCC---
T ss_pred             CCcEEEecCCCcC-----------ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcC-C-cCCC---
Confidence            3555666555543           5566554  78888888888887 5555   567888888888884 3 3554   


Q ss_pred             CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc
Q 047139          201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL  280 (611)
Q Consensus       201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  280 (611)
                      .+++|++|++++|.+++..+    .++      +|++|++++|++++ +|..   +++|++|++++|.+++ +|.   .+
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~----~l~------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~  160 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA----LPS------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LP  160 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC----CCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CC
T ss_pred             CCCCCCEEECcCCcCCCCCC----CCC------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---cc
Confidence            56677777777776664322    122      56666666666552 3332   2455555555555542 232   12


Q ss_pred             ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcc
Q 047139          281 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW  317 (611)
Q Consensus       281 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  317 (611)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.+
T Consensus       161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL  193 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence            344455555554442 22   2234444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=233.88  Aligned_cols=91  Identities=21%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc-ccChhHHh
Q 047139          478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS-GNIPAWIG  556 (611)
Q Consensus       478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~  556 (611)
                      +++|++|++++|+++         .+|+.+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++ +.+|.++.
T Consensus       190 l~~L~~L~Ls~N~l~---------~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          190 FAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             CTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             cccCCEEECCCCcCC---------cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            567777777777665         34555666778888888888887 56777888888888888888887 66666666


Q ss_pred             hcCCCCcEEECcCC-cCcccCCcc
Q 047139          557 ESMPSLSILRLRSN-HFNGTIPSE  579 (611)
Q Consensus       557 ~~l~~L~~L~ls~n-~l~~~~p~~  579 (611)
                      . +++|+.|++++| .+.|..|..
T Consensus       260 ~-~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          260 K-NQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             T-CHHHHHHHHHHHHHHHSSSSCC
T ss_pred             c-cccceEEECCCchhccCCchhc
Confidence            5 788888888844 455555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.9e-24  Score=227.45  Aligned_cols=236  Identities=22%  Similarity=0.203  Sum_probs=195.4

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID  224 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  224 (611)
                      .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+.
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            4555443  689999999999998889999999999999999999 6677778999999999999999999988888888


Q ss_pred             cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC-CccCcccCceEEecCCccccCCCcCCCC
Q 047139          225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQ  303 (611)
Q Consensus       225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~  303 (611)
                      .++      +|++|++++|++++..+..+.++++|++|++++|...+.++. .+..+++|++|++++|.+++ +| .+..
T Consensus       145 ~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~  216 (452)
T 3zyi_A          145 YLS------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTP  216 (452)
T ss_dssp             SCT------TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTT
T ss_pred             ccC------CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccc
Confidence            887      999999999999977777899999999999999654445554 68899999999999999985 44 5889


Q ss_pred             CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139          304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL  383 (611)
Q Consensus       304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  383 (611)
                      +++|++|++++|.+.+..+. .+.++++|+.|++++|.   +....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQ---VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             cccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCc---CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            99999999999999886555 79999999999999843   344444555666777777777777776666666777777


Q ss_pred             CEEEccCccccc
Q 047139          384 TTLVLNSASISD  395 (611)
Q Consensus       384 ~~L~l~~n~l~~  395 (611)
                      +.|++++|.+.-
T Consensus       293 ~~L~L~~Np~~C  304 (452)
T 3zyi_A          293 VELHLHHNPWNC  304 (452)
T ss_dssp             CEEECCSSCEEC
T ss_pred             CEEEccCCCcCC
Confidence            777777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.3e-27  Score=235.29  Aligned_cols=268  Identities=19%  Similarity=0.180  Sum_probs=185.1

Q ss_pred             CCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCC
Q 047139          122 LEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGT  201 (611)
Q Consensus       122 L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~  201 (611)
                      ++.+.+.++.++..+++.+.+...++..+..+++|++|++++|.+++..|..|+++++|++|++++|. +.+..+  +..
T Consensus         2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~   78 (317)
T 3o53_A            2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES   78 (317)
T ss_dssp             CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETT
T ss_pred             cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhh
Confidence            34455556666666777776665555556667788888888888887777778888888888888887 444333  778


Q ss_pred             CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139          202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT  281 (611)
Q Consensus       202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  281 (611)
                      +++|++|++++|.+++..+     .+      +|++|++++|.+++..+..   +++|++|++++|++++..|..+..++
T Consensus        79 l~~L~~L~Ls~n~l~~l~~-----~~------~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~  144 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELLV-----GP------SIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS  144 (317)
T ss_dssp             CTTCCEEECCSSEEEEEEE-----CT------TCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS
T ss_pred             cCCCCEEECcCCccccccC-----CC------CcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC
Confidence            8888888888887764332     12      7888888888887554433   56788888888888876666777788


Q ss_pred             cCceEEecCCccccCCCcCCC-CCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCccee
Q 047139          282 FLEELYLTSNQMNGKFPESFG-QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR  360 (611)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  360 (611)
                      +|++|++++|.+++..+..+. .+++|++|++++|.+++. +  ....+++|++|++++|...    .++..+..+++|+
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~  217 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVT  217 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCS
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--cccccccCCEEECCCCcCC----cchhhhcccCccc
Confidence            888888888888776665553 677888888888887764 2  2334777777777774432    1222345566777


Q ss_pred             EEEecccccCcccchhccCCCCCCEEEccCcccc-cccchhHHhcCCCCCEEEccC
Q 047139          361 YLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS-DTLPSWFLQLNLTLDELDVGG  415 (611)
Q Consensus       361 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~ls~  415 (611)
                      .|++++|.+. .+|..+..+++|+.|++++|.+. +..|.++.. .++|+.+++++
T Consensus       218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~-~~~L~~l~l~~  271 (317)
T 3o53_A          218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQT  271 (317)
T ss_dssp             EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT-CHHHHHHHHHH
T ss_pred             EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc-cccceEEECCC
Confidence            7777777766 45667777778888888888777 555555544 35667776663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.7e-24  Score=225.82  Aligned_cols=235  Identities=22%  Similarity=0.208  Sum_probs=194.3

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID  224 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  224 (611)
                      .+|..+.  +++++|+|++|++.+..+..|.++++|++|++++|. +.+..+..|.++++|++|++++|.+++..+..+.
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  133 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV  133 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence            4565443  789999999999998888999999999999999999 5666678899999999999999999988888888


Q ss_pred             cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC-CCccCcccCceEEecCCccccCCCcCCCC
Q 047139          225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP-PSLGNLTFLEELYLTSNQMNGKFPESFGQ  303 (611)
Q Consensus       225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  303 (611)
                      .++      +|++|++++|.+++..+..+..+++|++|++++|...+.++ ..|.++++|++|++++|.++ .+| .+..
T Consensus       134 ~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~  205 (440)
T 3zyj_A          134 YLS------KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP  205 (440)
T ss_dssp             SCS------SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred             ccc------cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence            887      99999999999998777889999999999999965444544 46899999999999999998 455 4889


Q ss_pred             CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139          304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL  383 (611)
Q Consensus       304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  383 (611)
                      +++|++|+|++|.+.+..+. .+.++++|+.|++++|.   +....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       206 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQ---IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCC---CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             CcccCEEECCCCccCccChh-hhccCccCCEEECCCCc---eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            99999999999999886565 78999999999999843   344444455566777777777777776666666777777


Q ss_pred             CEEEccCcccc
Q 047139          384 TTLVLNSASIS  394 (611)
Q Consensus       384 ~~L~l~~n~l~  394 (611)
                      +.|++++|.+.
T Consensus       282 ~~L~L~~Np~~  292 (440)
T 3zyj_A          282 ERIHLHHNPWN  292 (440)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEcCCCCcc
Confidence            77777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.1e-27  Score=234.39  Aligned_cols=252  Identities=18%  Similarity=0.147  Sum_probs=157.5

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC-------CCCCCCEEEcccccCCCccch
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG-------TLCNLQTLKLSLNQFSGEVSD  221 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~  221 (611)
                      .++..++|++|++++|.+  .+|..+...  |++|++++|.+....+|..+.       ++++|++|++++|.+++.+|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            355667788888888887  666655544  777788887743455666554       677888888888888777776


Q ss_pred             hh--hcCcccCCCCCCcEEEccCCCCCccCCcccCCC-----CCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139          222 FI--DGLSECINSSSLARLELGYNQLTGNLPISLGYL-----KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       222 ~l--~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  294 (611)
                      .+  ..++      +|++|++++|++++. |..+..+     ++|++|++++|++.+..|..++++++|++|++++|++.
T Consensus       114 ~~~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          114 PLLEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CSSSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             HHHHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            54  5555      788888888887765 6666655     77888888888777666677777778888888877766


Q ss_pred             cC--CCcCC--CCCCCCCEEEccCCcccc--ccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccc
Q 047139          295 GK--FPESF--GQLSAIRVLELSDNQWEG--FITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ  368 (611)
Q Consensus       295 ~~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  368 (611)
                      +.  .+..+  ..+++|++|++++|.+++  .++...+.++++|++|++++|..                          
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------------------  240 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL--------------------------  240 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC--------------------------
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC--------------------------
Confidence            54  22233  677777888887777763  23333455667777777777433                          


Q ss_pred             cCcccc-hhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccc
Q 047139          369 LGPKFP-TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG  443 (611)
Q Consensus       369 l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~  443 (611)
                       .+..| ..+..+++|++|++++|+++ .+|..+.   ++|++|++++|++++. |.......++.+++++|.+++
T Consensus       241 -~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          241 -RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred             -CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence             32222 22233445555555555554 4444332   3555555555555543 331112245555566555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.7e-25  Score=232.86  Aligned_cols=229  Identities=19%  Similarity=0.149  Sum_probs=179.4

Q ss_pred             CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceE
Q 047139          355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV  434 (611)
Q Consensus       355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l  434 (611)
                      .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|   ...+++|++|++++|.+++..+.    ..++.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence            34578888888888888778888888999999999998887666   33457899999999988754322    578889


Q ss_pred             EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCC
Q 047139          435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTI  513 (611)
Q Consensus       435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L  513 (611)
                      ++++|.+++..+..+.+++.|++     ++|.+++..|..++.+++|++|++++|.++        +.+|..+. .+++|
T Consensus       105 ~L~~N~l~~~~~~~l~~L~~L~L-----~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~L  171 (487)
T 3oja_A          105 HAANNNISRVSCSRGQGKKNIYL-----ANNKITMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTL  171 (487)
T ss_dssp             ECCSSCCCCEEECCCSSCEEEEC-----CSSCCCSGGGBCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTC
T ss_pred             ECcCCcCCCCCccccCCCCEEEC-----CCCCCCCCCchhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCCcc
Confidence            99999988877766665555544     999999888888889999999998887654        44566664 68899


Q ss_pred             CEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccC
Q 047139          514 RFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH  593 (611)
Q Consensus       514 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  593 (611)
                      ++|+|++|.+++. | .+..+++|+.|+|++|++++ +|..+.. +++|+.|++++|++++ +|..+..+++|+.|++++
T Consensus       172 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          172 EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred             cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcC-CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence            9999999999865 3 23468899999999999985 5555554 8999999999999995 788888889999999999


Q ss_pred             CcCc-cCCCccccccC
Q 047139          594 NNLL-GPIPYCVGDFS  608 (611)
Q Consensus       594 n~l~-g~iP~~~~~~~  608 (611)
                      |++. +.+|..++.++
T Consensus       247 N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          247 NGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             CCBCHHHHHHHHTTCH
T ss_pred             CCCcCcchHHHHHhCC
Confidence            9987 77776666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-24  Score=230.48  Aligned_cols=221  Identities=23%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139          143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF  222 (611)
Q Consensus       143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  222 (611)
                      ++..|..|..+++|++|+|++|.+++..|  ++.+++|++|++++|.+ ++ +|    ..++|++|++++|.+++..+..
T Consensus        47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~-l~----~~~~L~~L~L~~N~l~~~~~~~  118 (487)
T 3oja_A           47 SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QE-LL----VGPSIETLHAANNNISRVSCSR  118 (487)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EE-EE----ECTTCCEEECCSSCCCCEEECC
T ss_pred             CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CC-CC----CCCCcCEEECcCCcCCCCCccc
Confidence            33444455555555555555555554333  55555555555555552 21 11    1245555555555555443322


Q ss_pred             hhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc-CcccCceEEecCCccccCCCcCC
Q 047139          223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG-NLTFLEELYLTSNQMNGKFPESF  301 (611)
Q Consensus       223 l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l  301 (611)
                         ++      +|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ..
T Consensus       119 ---l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~  187 (487)
T 3oja_A          119 ---GQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQ  187 (487)
T ss_dssp             ---CS------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CC
T ss_pred             ---cC------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cc
Confidence               12      455555555555555555555555555555555555554444443 455555555555555533 1 12


Q ss_pred             CCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCC
Q 047139          302 GQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQT  381 (611)
Q Consensus       302 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  381 (611)
                      ..+++|+.|+|++|.+++. +. .+..+++|+.|++++                           |.+.+ +|.++..++
T Consensus       188 ~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~L~~L~Ls~---------------------------N~l~~-lp~~l~~l~  237 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAFM-GP-EFQSAAGVTWISLRN---------------------------NKLVL-IEKALRFSQ  237 (487)
T ss_dssp             CCCTTCCEEECCSSCCCEE-CG-GGGGGTTCSEEECTT---------------------------SCCCE-ECTTCCCCT
T ss_pred             ccCCCCCEEECCCCCCCCC-CH-hHcCCCCccEEEecC---------------------------CcCcc-cchhhccCC
Confidence            2355555555555555542 22 244444444444444                           44442 455566666


Q ss_pred             CCCEEEccCcccc-cccchhHHhcCCCCCEEEc
Q 047139          382 ELTTLVLNSASIS-DTLPSWFLQLNLTLDELDV  413 (611)
Q Consensus       382 ~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~l  413 (611)
                      +|+.|++++|.+. +.+|.++.. .+.++.+++
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~-l~~L~~l~~  269 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAK  269 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTT-CHHHHHHHH
T ss_pred             CCCEEEcCCCCCcCcchHHHHHh-CCCCcEEec
Confidence            6777777777666 444444433 234444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6.9e-22  Score=194.08  Aligned_cols=200  Identities=29%  Similarity=0.367  Sum_probs=167.4

Q ss_pred             CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139          121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG  200 (611)
Q Consensus       121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  200 (611)
                      ..+++++++++++           .+|..+.  +++++|++++|++++..+..|.++++|++|++++|. +....+..+.
T Consensus        17 ~~~~l~~~~~~l~-----------~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~   82 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-----------AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK   82 (270)
T ss_dssp             TTTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred             CCCEEEccCCCCC-----------ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence            3456666665554           4565443  689999999999997777789999999999999999 4544445568


Q ss_pred             CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc
Q 047139          201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL  280 (611)
Q Consensus       201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  280 (611)
                      ++++|++|++++|.+++..+..+..++      +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCS------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCCEEECCCCcCCcCCHhHccccc------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            899999999999999988887788777      99999999999998888888999999999999999997666668999


Q ss_pred             ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139          281 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       281 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                      ++|++|++++|.+++..+..+.++++|++|++++|++++ ++...+..+++|+.|++++|+
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCC
Confidence            999999999999997777778899999999999999986 444468888888888888843

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4.6e-22  Score=196.06  Aligned_cols=216  Identities=27%  Similarity=0.257  Sum_probs=130.7

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID  224 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  224 (611)
                      .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+.
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            3454432  467777777777776656567777777777777776 4444445666677777777777766666555555


Q ss_pred             cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccccc-CCCCccCcccCceEEecCCccccCCCcCCCC
Q 047139          225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS-IPPSLGNLTFLEELYLTSNQMNGKFPESFGQ  303 (611)
Q Consensus       225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  303 (611)
                      .++      +|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..
T Consensus        98 ~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           98 GLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             TCT------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CCc------cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            555      666666666666654444555666666666666665542 3555555555555555555555444444443


Q ss_pred             CCCCC----EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccC
Q 047139          304 LSAIR----VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRN  379 (611)
Q Consensus       304 l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  379 (611)
                      +++|+    .|++++|.+.+..+                             ......+|+.|++++|.+.+..+..+..
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~-----------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQP-----------------------------GAFKEIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECT-----------------------------TSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             hhhccccceeeecCCCcccccCc-----------------------------cccCCCcccEEECCCCceeecCHhHhcc
Confidence            33333    45555554443211                             1222236777777777777665666777


Q ss_pred             CCCCCEEEccCcccccccc
Q 047139          380 QTELTTLVLNSASISDTLP  398 (611)
Q Consensus       380 ~~~L~~L~l~~n~l~~~~p  398 (611)
                      +++|++|++++|.+.+..|
T Consensus       223 l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTT
T ss_pred             cccccEEEccCCcccccCC
Confidence            8888888888888876654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3e-22  Score=194.37  Aligned_cols=160  Identities=28%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS  233 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~  233 (611)
                      +++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+..++      
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------  107 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccC------
Confidence            345555555555555445455555555555555555 3444444455555555555555555555555555554      


Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            66666666666665555556667777777777777775555567777777777777777776666667777777777777


Q ss_pred             CCccccc
Q 047139          314 DNQWEGF  320 (611)
Q Consensus       314 ~n~l~~~  320 (611)
                      +|++.+.
T Consensus       188 ~N~~~c~  194 (251)
T 3m19_A          188 GNQFDCS  194 (251)
T ss_dssp             SCCBCTT
T ss_pred             CCceeCC
Confidence            7777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.6e-22  Score=198.82  Aligned_cols=177  Identities=28%  Similarity=0.319  Sum_probs=91.9

Q ss_pred             cCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccC
Q 047139          151 FNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI  230 (611)
Q Consensus       151 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~  230 (611)
                      ..+++|+.|++++|.+. .++ .++.+++|++|++++|.+ .+ + ..+.++++|++|++++|.+++..+..+..++   
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l-~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---  109 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKL-HD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT---  109 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCC-CC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred             ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCC-CC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc---
Confidence            34444555555555444 222 244455555555555542 22 1 2444555555555555555544444444444   


Q ss_pred             CCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139          231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL  310 (611)
Q Consensus       231 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  310 (611)
                         +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       110 ---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          110 ---NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             ---TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence               55555555555554444445555556666666655554444445555666666666666555444445555666666


Q ss_pred             EccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          311 ELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       311 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      ++++|++.+..+. .+..+++|+.|++++
T Consensus       187 ~L~~N~l~~~~~~-~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          187 RLYQNQLKSVPDG-VFDRLTSLQYIWLHD  214 (272)
T ss_dssp             ECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred             ECCCCcCCccCHH-HHhCCcCCCEEEccC
Confidence            6666665553332 455555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.6e-23  Score=201.52  Aligned_cols=183  Identities=27%  Similarity=0.354  Sum_probs=147.6

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      ...+++|+.|++++|.++           .+ ..+..+++|++|++++|.+++ + ..++.+++|++|++++|. +.+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~-----------~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~  101 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-----------SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLP  101 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-----------CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCC
T ss_pred             cccccceeeeeeCCCCcc-----------cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccC
Confidence            456677777777776654           22 247788899999999988885 3 368888899999999988 56666


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      +..++++++|++|++++|.+++..+..+..++      +|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHHHhccCC------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            66678888999999999988887777777777      899999999988877777778888999999999988877676


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            77888899999999998888777778888899999999887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.8e-22  Score=198.99  Aligned_cols=203  Identities=27%  Similarity=0.286  Sum_probs=168.7

Q ss_pred             CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccC
Q 047139          120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL  199 (611)
Q Consensus       120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  199 (611)
                      ++|++|++++|++          ++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+ +.+..+..+
T Consensus        28 ~~l~~L~ls~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (276)
T 2z62_A           28 FSTKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF   96 (276)
T ss_dssp             TTCCEEECTTCCC----------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred             CCccEEECCCCcc----------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence            3566666666555          44555678999999999999999997777789999999999999999 566667889


Q ss_pred             CCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCcc-CCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139          200 GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIPPSLG  278 (611)
Q Consensus       200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  278 (611)
                      .++++|++|++++|.+.+..+..+..++      +|++|++++|.+++. +|..+..+++|++|++++|++++..+..+.
T Consensus        97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             cCCccccEEECCCCCccccCchhcccCC------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            9999999999999999988777777777      999999999999863 688999999999999999999987777787


Q ss_pred             CcccCc----eEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139          279 NLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       279 ~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                      .+++|+    +|++++|.+++..+..+ ...+|++|++++|.+++. +...+..+++|+.|++++|+
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSC
T ss_pred             hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec-CHhHhcccccccEEEccCCc
Confidence            777777    89999999986555544 445899999999999864 44467888899999888843

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.8e-21  Score=192.77  Aligned_cols=200  Identities=25%  Similarity=0.177  Sum_probs=127.3

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      +.+++++++++++++.++           .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|.+ ++ +
T Consensus         6 ~~~l~~l~~l~~~~~~l~-----------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~-~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-----------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TK-L   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-----------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CE-E
T ss_pred             ccccCCccEEECCCCCCC-----------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-Cc-c
Confidence            556666777777666554           3444332  5667777777777666666677777777777777763 32 2


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      +.. +.+++|++|++++|.++ .+|..+..++      +|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus        71 ~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G           71 QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             cCC-CCCCcCCEEECCCCcCC-cCchhhccCC------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence            322 56667777777777766 3444455554      677777777777755556667777777777777777655555


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT  340 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~  340 (611)
                      .+..+++|++|++++|++++..+..+..+++|++|++++|+++. +|. .+...++|+.+++++|
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~-~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK-GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT-TTTTTCCCSEEECCSC
T ss_pred             hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cCh-hhcccccCCeEEeCCC
Confidence            56667777777777777765444455667777777777777663 444 3455566777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.5e-23  Score=215.23  Aligned_cols=115  Identities=11%  Similarity=0.067  Sum_probs=75.9

Q ss_pred             cCCCCeeecccccc----hhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCc-CCCCEEECcCCcccccCc----cc
Q 047139          461 DISFNSINGSIPQS----VGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSL-LTIRFLVLSNNHLSGEIP----PS  530 (611)
Q Consensus       461 ~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l-~~L~~L~Ls~n~l~~~~p----~~  530 (611)
                      ++++|.+++..+..    +..+ ++|++|+|++|++++.+.    ..++..+... ++|++|+|++|.+++..+    ..
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  248 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL  248 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence            33555555444433    3444 589999999988774332    1245555553 589999999999886544    34


Q ss_pred             ccCCCCCCEEECCCCcCcccChhHH------hhcCCCCcEEECcCCcCcccCCcc
Q 047139          531 LKNCSLMDSLDLGENQLSGNIPAWI------GESMPSLSILRLRSNHFNGTIPSE  579 (611)
Q Consensus       531 l~~l~~L~~L~Ls~N~l~~~ip~~l------~~~l~~L~~L~ls~n~l~~~~p~~  579 (611)
                      +..+++|+.|++++|.+.+..+..+      ...+++|+.|++++|++.+..+..
T Consensus       249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            5677889999999998553333211      123677888999999988765544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=218.15  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             CCCCccCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCC
Q 047139          273 IPPSLGNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDN  315 (611)
Q Consensus       273 ~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n  315 (611)
                      ++..+..+++|++|++++|.+++.    ++..+..+++|++|+|++|
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~   70 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   70 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence            445556666777777777766654    2333556666777777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2.2e-23  Score=216.07  Aligned_cols=243  Identities=21%  Similarity=0.242  Sum_probs=132.6

Q ss_pred             CCccccCCCCCCEEEccCCCCCCCC----CccCCCCCCCCEEEccCCCC--CcccccccC-------CCCCCCCEEEccc
Q 047139          146 LPHWLFNITNLLSLDLSSNDLQGDI----PDGFSSLNSLQLLDLSGNSF--LEGQLSRNL-------GTLCNLQTLKLSL  212 (611)
Q Consensus       146 ~p~~l~~l~~L~~L~L~~n~~~~~~----p~~l~~l~~L~~L~Ls~n~~--~~~~~~~~l-------~~l~~L~~L~l~~  212 (611)
                      ++..+..+++|++|++++|.+.+..    +..+..+++|++|++++|.+  +.+.+|..+       .++++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4555666666666666666665432    23355666666666666531  223344333       5666666666666


Q ss_pred             ccCCC----ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccC----CC---------CCCcEEEccCCccc-ccCC
Q 047139          213 NQFSG----EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG----YL---------KNLRYLELWYNSFL-GSIP  274 (611)
Q Consensus       213 n~l~~----~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~-~~~p  274 (611)
                      |.+++    .++..+..++      +|++|++++|.+++..+..+.    .+         ++|++|++++|+++ +.+|
T Consensus       104 n~l~~~~~~~l~~~l~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHT------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCT------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             CcCCHHHHHHHHHHHHhCC------CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            66665    3444555554      666666666666533332222    22         66666666666665 2333


Q ss_pred             ---CCccCcccCceEEecCCcccc-----CCCcCCCCCCCCCEEEccCCccc----cccChhhhcCCCCCCEEEcCccCC
Q 047139          275 ---PSLGNLTFLEELYLTSNQMNG-----KFPESFGQLSAIRVLELSDNQWE----GFITDAHLRNLTSLEELSLIKTSN  342 (611)
Q Consensus       275 ---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~~  342 (611)
                         ..+..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    +.++. .+..+++|++|++++|..
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCC
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCC
Confidence               234456666677776666652     22335566666777777776664    33333 455555566665555322


Q ss_pred             CCceeeccCCCCCCcceeEEEecccccCcc----cchhccC--CCCCCEEEccCccccc----ccchhHHhcCCCCCEEE
Q 047139          343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPK----FPTWLRN--QTELTTLVLNSASISD----TLPSWFLQLNLTLDELD  412 (611)
Q Consensus       343 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~--~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~  412 (611)
                                                 ++.    ++..+..  +++|++|++++|.+++    .+|..+...+++|++|+
T Consensus       257 ---------------------------~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          257 ---------------------------SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             ---------------------------CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ---------------------------chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                                       211    3344422  5556666666666655    35555544345666666


Q ss_pred             ccCccccccc
Q 047139          413 VGGNHLSGRI  422 (611)
Q Consensus       413 ls~n~l~~~~  422 (611)
                      +++|.+++..
T Consensus       310 l~~N~l~~~~  319 (386)
T 2ca6_A          310 LNGNRFSEED  319 (386)
T ss_dssp             CTTSBSCTTS
T ss_pred             ccCCcCCcch
Confidence            6666655443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=9.8e-21  Score=187.53  Aligned_cols=204  Identities=23%  Similarity=0.269  Sum_probs=164.7

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      .+.+++++++++++++.++ .+|..+.  +++++|++++|. +.+..+..+.++++|++|++++|.+++..+.  +.++ 
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~-   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP-   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT-
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC-
Confidence            4778899999999999998 6676664  689999999999 5666778899999999999999999865443  4444 


Q ss_pred             cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                           +|++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|+
T Consensus        78 -----~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           78 -----VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             -----TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             -----cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence                 8999999999998 7788888999999999999999977777899999999999999999877777788899999


Q ss_pred             EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139          309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL  388 (611)
Q Consensus       309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  388 (611)
                      .|++++|++++ ++...+..+++|+.|++++|..                           . .+|..+...++|+.+++
T Consensus       152 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l---------------------------~-~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL---------------------------Y-TIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             EEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCC---------------------------C-CCCTTTTTTCCCSEEEC
T ss_pred             EEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcC---------------------------C-ccChhhcccccCCeEEe
Confidence            99999999885 4544677788888888877433                           2 34444555566677777


Q ss_pred             cCcccc
Q 047139          389 NSASIS  394 (611)
Q Consensus       389 ~~n~l~  394 (611)
                      ++|.+.
T Consensus       203 ~~Np~~  208 (290)
T 1p9a_G          203 HGNPWL  208 (290)
T ss_dssp             CSCCBC
T ss_pred             CCCCcc
Confidence            766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.2e-24  Score=216.45  Aligned_cols=236  Identities=19%  Similarity=0.231  Sum_probs=174.4

Q ss_pred             CCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCC--CCCCEEECCCCCCCeEEccCCcCcc
Q 047139           67 EDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQL--KDLEYLDLSLNNFKVLDLSNNGFNS  144 (611)
Q Consensus        67 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~ls~n~l~~L~L~~n~l~~  144 (611)
                      ..|.+|.++.|+.  ..++.+++++              +.+.   +..+..+  ++++.|++++|.+          .+
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~--------------~~~~---~~~~~~~~~~~l~~L~l~~n~l----------~~   84 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTG--------------KNLH---PDVTGRLLSQGVIAFRCPRSFM----------DQ   84 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTT--------------CBCC---HHHHHHHHHTTCSEEECTTCEE----------CS
T ss_pred             HHHHHHHHHhcCc--hhheeecccc--------------ccCC---HHHHHhhhhccceEEEcCCccc----------cc
Confidence            3455799988863  4567888877              4444   3445555  6777777666544          44


Q ss_pred             CCCccccCCCCCCEEEccCCCCCCC-CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccc-cCCCc-cch
Q 047139          145 TLPHWLFNITNLLSLDLSSNDLQGD-IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN-QFSGE-VSD  221 (611)
Q Consensus       145 ~~p~~l~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~  221 (611)
                      ..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|. +++..+..++++++|++|++++| .+++. .+.
T Consensus        85 ~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           85 PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence            4444 56789999999999988765 77788889999999999998 66677888888999999999998 67653 566


Q ss_pred             hhhcCcccCCCCCCcEEEccCC-CCCcc-CCcccCCCC-CCcEEEccCC--ccc-ccCCCCccCcccCceEEecCCc-cc
Q 047139          222 FIDGLSECINSSSLARLELGYN-QLTGN-LPISLGYLK-NLRYLELWYN--SFL-GSIPPSLGNLTFLEELYLTSNQ-MN  294 (611)
Q Consensus       222 ~l~~l~~~~~~~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~  294 (611)
                      .+..++      +|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. ++
T Consensus       163 ~~~~~~------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          163 LLSSCS------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             HHHHCT------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             HHhcCC------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            677666      8999999998 88754 566677888 8999999988  454 4556667778888999998888 66


Q ss_pred             cCCCcCCCCCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCcc
Q 047139          295 GKFPESFGQLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKT  340 (611)
Q Consensus       295 ~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~  340 (611)
                      +..+..+.++++|++|++++|. +..... ..+..+++|+.|++++|
T Consensus       237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          237 NDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence            6677778888888888888885 222111 24667777777777773

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=9.1e-23  Score=207.25  Aligned_cols=242  Identities=19%  Similarity=0.215  Sum_probs=172.9

Q ss_pred             CccccCC--CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-ccccCCCCCCCCEEEcccccCCCccchhh
Q 047139          147 PHWLFNI--TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ-LSRNLGTLCNLQTLKLSLNQFSGEVSDFI  223 (611)
Q Consensus       147 p~~l~~l--~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  223 (611)
                      |..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|. +.+. ++..+.++++|++|++++|.+++..+..+
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l  138 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL  138 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence            4566667  8999999999998876655 6678999999999998 4444 77788889999999999998888778877


Q ss_pred             hcCcccCCCCCCcEEEccCC-CCCcc-CCcccCCCCCCcEEEccCC-ccccc-CCCCccCcc-cCceEEecCC--ccc-c
Q 047139          224 DGLSECINSSSLARLELGYN-QLTGN-LPISLGYLKNLRYLELWYN-SFLGS-IPPSLGNLT-FLEELYLTSN--QMN-G  295 (611)
Q Consensus       224 ~~l~~~~~~~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~  295 (611)
                      +.++      +|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +
T Consensus       139 ~~~~------~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          139 AKNS------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             TTCT------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred             hcCC------CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence            7766      8999999988 67653 5666778888888888888 77754 566677788 8888888888  444 3


Q ss_pred             CCCcCCCCCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccc
Q 047139          296 KFPESFGQLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP  374 (611)
Q Consensus       296 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  374 (611)
                      .++..+..+++|++|++++|. +++..+. .+..+++|++|++++|..                          +.....
T Consensus       213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~--------------------------~~~~~~  265 (336)
T 2ast_B          213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYD--------------------------IIPETL  265 (336)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTT--------------------------CCGGGG
T ss_pred             HHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCC--------------------------CCHHHH
Confidence            455566677888888888887 5554444 566777777777777421                          111222


Q ss_pred             hhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc
Q 047139          375 TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV  427 (611)
Q Consensus       375 ~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  427 (611)
                      ..+..+++|++|++++| +++..-..+..   .+..|++++|++++..|....
T Consensus       266 ~~l~~~~~L~~L~l~~~-i~~~~~~~l~~---~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGGGCTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCCCSCCTTCSSCS
T ss_pred             HHHhcCCCCCEEeccCc-cCHHHHHHHHh---hCcceEEecccCccccCCccc
Confidence            34666788888888887 44333333322   355555777777766665543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.1e-23  Score=211.87  Aligned_cols=260  Identities=20%  Similarity=0.173  Sum_probs=155.1

Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCC----ccCCCCC-CCCEEEccCCCCCcccccccCCCC-----CC
Q 047139          135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP----DGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTL-----CN  204 (611)
Q Consensus       135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l-----~~  204 (611)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    +.+.+++ +|++|++++|. +.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC
Confidence            4566677777777777777778888888888876655    5677777 78888888887 455545555443     78


Q ss_pred             CCEEEcccccCCCccchhhhcCcccCCC-CCCcEEEccCCCCCccCCccc----CC-CCCCcEEEccCCcccccCC----
Q 047139          205 LQTLKLSLNQFSGEVSDFIDGLSECINS-SSLARLELGYNQLTGNLPISL----GY-LKNLRYLELWYNSFLGSIP----  274 (611)
Q Consensus       205 L~~L~l~~n~l~~~~~~~l~~l~~~~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~p----  274 (611)
                      |++|++++|.+++..+..+...-  ... ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTL--AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHH--HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHH--HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            88888888888776666544320  011 278888888888876555443    23 3578888888887775332    


Q ss_pred             CCccCcc-cCceEEecCCccccCCCcCC----CCC-CCCCEEEccCCccccc----cChhhhcC-CCCCCEEEcCccCCC
Q 047139          275 PSLGNLT-FLEELYLTSNQMNGKFPESF----GQL-SAIRVLELSDNQWEGF----ITDAHLRN-LTSLEELSLIKTSNS  343 (611)
Q Consensus       275 ~~l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~l~~-l~~L~~L~l~~~~~~  343 (611)
                      ..+...+ +|++|++++|.+++..+..+    ..+ ++|++|+|++|.+.+.    ++. .+.. .++|++|++++|...
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCC
Confidence            3334444 78888888888876555433    334 4788888888887652    222 2333 457777777774432


Q ss_pred             Ccee-eccCCCCCCcceeEEEecccccCcc-------cchhccCCCCCCEEEccCcccccccc
Q 047139          344 SLSF-NISFDWIPPFKLRYLVIRYYQLGPK-------FPTWLRNQTELTTLVLNSASISDTLP  398 (611)
Q Consensus       344 ~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~-------~~~~l~~~~~L~~L~l~~n~l~~~~p  398 (611)
                      .... .+......+++|+.|++++|.+.+.       ++..+..+++|+.|++++|.+.+..+
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            1111 0111223334455555555542221       12233444455555555555544433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.9e-21  Score=183.81  Aligned_cols=193  Identities=23%  Similarity=0.224  Sum_probs=157.1

Q ss_pred             eEEccCCcCccCCCccccCCCCCCEEEccCCC-CCCCCCccCCCCCCCCEEEccC-CCCCcccccccCCCCCCCCEEEcc
Q 047139          134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSND-LQGDIPDGFSSLNSLQLLDLSG-NSFLEGQLSRNLGTLCNLQTLKLS  211 (611)
Q Consensus       134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~l~  211 (611)
                      +|++++|.+++..+..+.++++|++|++++|. +++..+..|.++++|++|++++ |. +.+..+..+.++++|++|+++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCC
Confidence            44444445555566689999999999999997 8866667899999999999998 88 555555778899999999999


Q ss_pred             cccCCCccchhhhcCcccCCCCCCc---EEEccCC-CCCccCCcccCCCCCCc-EEEccCCcccccCCCCccCcccCceE
Q 047139          212 LNQFSGEVSDFIDGLSECINSSSLA---RLELGYN-QLTGNLPISLGYLKNLR-YLELWYNSFLGSIPPSLGNLTFLEEL  286 (611)
Q Consensus       212 ~n~l~~~~~~~l~~l~~~~~~~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L  286 (611)
                      +|.+++ +|. +..++      +|+   +|++++| .+++..+..|..+++|+ +|++++|+++ .+|......++|++|
T Consensus       114 ~n~l~~-lp~-~~~l~------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L  184 (239)
T 2xwt_C          114 NTGLKM-FPD-LTKVY------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV  184 (239)
T ss_dssp             EECCCS-CCC-CTTCC------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred             CCCCcc-ccc-ccccc------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence            999987 454 66555      666   9999999 99877777899999999 9999999998 556554444899999


Q ss_pred             EecCCc-cccCCCcCCCCC-CCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139          287 YLTSNQ-MNGKFPESFGQL-SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT  340 (611)
Q Consensus       287 ~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~  340 (611)
                      ++++|. +++..+..|..+ ++|++|++++|++++ +|..   .+++|+.|++.++
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence            999995 887667788899 999999999999986 4442   6788889988873

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=5e-21  Score=191.92  Aligned_cols=194  Identities=20%  Similarity=0.182  Sum_probs=95.3

Q ss_pred             CCeEEccCCcCccCCCccc--cCCCCCCEEEccCCCCCCCCC----ccCCCCCCCCEEEccCCCCCcccccccCCCCCCC
Q 047139          132 FKVLDLSNNGFNSTLPHWL--FNITNLLSLDLSSNDLQGDIP----DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL  205 (611)
Q Consensus       132 l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  205 (611)
                      +++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|+ +.+..+..++++++|
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCC
Confidence            3355555555555555554  555555555555555554333    223445555555555555 344444555555555


Q ss_pred             CEEEcccccCCCc--c--chhhhcCcccCCCCCCcEEEccCCCCCccCCc----ccCCCCCCcEEEccCCcccccCCCCc
Q 047139          206 QTLKLSLNQFSGE--V--SDFIDGLSECINSSSLARLELGYNQLTGNLPI----SLGYLKNLRYLELWYNSFLGSIPPSL  277 (611)
Q Consensus       206 ~~L~l~~n~l~~~--~--~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l  277 (611)
                      ++|++++|++.+.  .  +..+..++      +|++|++++|+++ .++.    .+..+++|++|++++|++++..|..+
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~------~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFP------AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSC------CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCC------CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            5555555554432  1  01112232      5555555555554 1111    12344555555555555555445444


Q ss_pred             cCc---ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          278 GNL---TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       278 ~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      ..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |.  +..+++|+.|++++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~L~L~~  303 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELPEVDNLTLDG  303 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCCCCSCEECSS
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCCCccEEECcC
Confidence            443   35555555555555 3444442  4555555555555542 21  34445555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.2e-20  Score=179.81  Aligned_cols=188  Identities=16%  Similarity=0.197  Sum_probs=158.9

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCC-CCeEEccCCcCccCCCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEE
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNN-FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLL  183 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~-l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L  183 (611)
                      +.+++..+..+..+++|++|++++|+ ++          +..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus        41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           41 THLRTIPSHAFSNLPNISRIYVSIDVTLQ----------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEEECCSSCC----------EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcceEECHHHccCCCCCcEEeCCCCCCcc----------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            78888777789999999999888875 64          33455789999999999999 99997777889999999999


Q ss_pred             EccCCCCCcccccccCCCCCCCC---EEEcccc-cCCCccchhhhcCcccCCCCCCc-EEEccCCCCCccCCcccCCCCC
Q 047139          184 DLSGNSFLEGQLSRNLGTLCNLQ---TLKLSLN-QFSGEVSDFIDGLSECINSSSLA-RLELGYNQLTGNLPISLGYLKN  258 (611)
Q Consensus       184 ~Ls~n~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~~~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~  258 (611)
                      ++++|++ .+ +|. +.++++|+   +|++++| .+++..+..+..++      +|+ +|++++|+++ .+|......++
T Consensus       111 ~l~~n~l-~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~------~L~~~L~l~~n~l~-~i~~~~~~~~~  180 (239)
T 2xwt_C          111 GIFNTGL-KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------NETLTLKLYNNGFT-SVQGYAFNGTK  180 (239)
T ss_dssp             EEEEECC-CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB------SSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred             eCCCCCC-cc-ccc-cccccccccccEEECCCCcchhhcCcccccchh------cceeEEEcCCCCCc-ccCHhhcCCCC
Confidence            9999994 44 666 88888888   9999999 99988888888887      999 9999999999 55555444489


Q ss_pred             CcEEEccCCc-ccccCCCCccCc-ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCc
Q 047139          259 LRYLELWYNS-FLGSIPPSLGNL-TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ  316 (611)
Q Consensus       259 L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  316 (611)
                      |++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|..  .+++|+.|+++++.
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            9999999995 886667788999 999999999999984 5543  67899999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=8.3e-21  Score=190.34  Aligned_cols=196  Identities=20%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             ccccccceeeeCccc--cCCCCCCEEECCCCCCCeEEccCCcCccCCC----ccccCCCCCCEEEccCCCCCCCCCccCC
Q 047139          102 DDAVHELRGKISPSL--LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLP----HWLFNITNLLSLDLSSNDLQGDIPDGFS  175 (611)
Q Consensus       102 ~~~~~~l~~~~~~~l--~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~~~~~~p~~l~  175 (611)
                      ++..+.+.+..|..+  ..+++|++|++++|.++          +..+    ..+..+++|++|++++|.+.+..|..++
T Consensus        97 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~----------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           97 TLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA----------TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             EEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS----------STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             EeeCCEeccchhhhhhhccCCCCCEEEeeccccc----------chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            334478888888877  77888887777776653          4433    3456799999999999999988889999


Q ss_pred             CCCCCCEEEccCCCCCccc--cc--ccCCCCCCCCEEEcccccCCCccch---hhhcCcccCCCCCCcEEEccCCCCCcc
Q 047139          176 SLNSLQLLDLSGNSFLEGQ--LS--RNLGTLCNLQTLKLSLNQFSGEVSD---FIDGLSECINSSSLARLELGYNQLTGN  248 (611)
Q Consensus       176 ~l~~L~~L~Ls~n~~~~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~~~~~~~L~~L~Ls~n~l~~~  248 (611)
                      ++++|++|++++|++ .+.  ++  ..++++++|++|++++|.++...+.   .+..++      +|++|++++|++++.
T Consensus       167 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          167 AFPALTSLDLSDNPG-LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------QPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CCTTCCEEECCSCTT-CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC------CCSSEECTTSCCCCC
T ss_pred             cCCCCCEEECCCCCC-ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC------CCCEEECCCCCCCcc
Confidence            999999999999984 321  22  3347899999999999999743221   245666      999999999999988


Q ss_pred             CCcccCCC---CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          249 LPISLGYL---KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       249 ~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      .|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88888876   69999999999999 7788775  8999999999999963 43 6788999999999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.1e-19  Score=176.22  Aligned_cols=177  Identities=25%  Similarity=0.305  Sum_probs=153.4

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS  233 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~  233 (611)
                      ...++++++++.++ .+|..+.  +++++|++++|. +.+..+..+.++++|++|++++|.+++..+..+..++      
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC------
Confidence            34578888888888 6776665  689999999999 6777777899999999999999999998888888887      


Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+|+
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            99999999999998777888999999999999999997766678899999999999999997777689999999999999


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccC
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                      +|++.+..+ ..+..+++|+.|++++|+
T Consensus       164 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          164 TNQLQSVPH-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             SSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             CCcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence            999987544 378888888888888843

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.6e-20  Score=185.27  Aligned_cols=192  Identities=26%  Similarity=0.359  Sum_probs=136.2

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      ...+++|++|++++|.++           .+| .+..+++|++|++++|.+++. +. +..+++|++|++++|++ .+ +
T Consensus        37 ~~~l~~L~~L~l~~~~i~-----------~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l-~~-~  100 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-----------TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL-KN-V  100 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC-SC-C
T ss_pred             HHHcCCcCEEEeeCCCcc-----------Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC-CC-c
Confidence            345667777777776654           234 477788888888888888743 43 88888888888888884 33 3


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                       ..+.++++|++|++++|.+++..+  +..++      +|++|++++|.+++..+  +..+++|++|++++|.+++. +.
T Consensus       101 -~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~  168 (308)
T 1h6u_A          101 -SAIAGLQSIKTLDLTSTQITDVTP--LAGLS------NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP  168 (308)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred             -hhhcCCCCCCEEECCCCCCCCchh--hcCCC------CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh
Confidence             357788888888888888776432  55555      78888888888875433  77778888888888887753 33


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                       +..+++|++|++++|.+++. +. +..+++|++|++++|++.+..   .+..+++|+.|++++|.
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred             -hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCe
Confidence             77778888888888887743 32 677788888888888877643   26677777777777743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.9e-20  Score=174.02  Aligned_cols=163  Identities=28%  Similarity=0.280  Sum_probs=127.4

Q ss_pred             CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccC
Q 047139          120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL  199 (611)
Q Consensus       120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  199 (611)
                      ++|++|++++|++          ++..+..+.++++|++|++++|++++..+..|.++++|++|++++|. +.+..+..+
T Consensus        28 ~~l~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~   96 (208)
T 2o6s_A           28 AQTTYLDLETNSL----------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF   96 (208)
T ss_dssp             TTCSEEECCSSCC----------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             CCCcEEEcCCCcc----------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence            4566666655544          44555668889999999999999986666678889999999999998 555555567


Q ss_pred             CCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccC
Q 047139          200 GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGN  279 (611)
Q Consensus       200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  279 (611)
                      .++++|++|++++|.+++..+..+..++      +|++|++++|.+++..+..+..+++|++|++++|.+.+       .
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~  163 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLT------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T  163 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------C
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCC------cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------C
Confidence            8889999999999998877777777776      88888998888886666667888888888888887654       3


Q ss_pred             cccCceEEecCCccccCCCcCCCCCCC
Q 047139          280 LTFLEELYLTSNQMNGKFPESFGQLSA  306 (611)
Q Consensus       280 l~~L~~L~L~~n~l~~~~~~~l~~l~~  306 (611)
                      +++|++|+++.|.++|.+|.+++.++.
T Consensus       164 ~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCCHHHHHHHHHhCCceeeccCccccC
Confidence            457888888888888888887776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2.9e-20  Score=199.66  Aligned_cols=205  Identities=24%  Similarity=0.281  Sum_probs=165.1

Q ss_pred             CC-CCCCCC-----CcccE-EecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeE
Q 047139           63 SW-VGEDCC-----SWRGV-GCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVL  135 (611)
Q Consensus        63 ~W-~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L  135 (611)
                      +| .+.++|     .|.|+ .|..  ++++.|++++              +++++ +|..+.  ++|++|++++|+++  
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~--------------n~L~~-lp~~l~--~~L~~L~Ls~N~l~--   93 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNR--------------LNLSS-LPDNLP--PQITVLEITQNALI--   93 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCS--------------SCCSC-CCSCCC--TTCSEEECCSSCCS--
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCC--------------CCCCc-cCHhHc--CCCCEEECcCCCCc--
Confidence            45 444566     69999 7863  5799999999              77776 777663  77888887777664  


Q ss_pred             EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139          136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF  215 (611)
Q Consensus       136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  215 (611)
                               .+|   ..+++|++|++++|.+++ +|. +.+  +|++|++++|.+ ++ +|.   .+++|++|++++|.+
T Consensus        94 ---------~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           94 ---------SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL-TM-LPE---LPALLEYINADNNQL  152 (571)
T ss_dssp             ---------CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCC
T ss_pred             ---------ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC-CC-CCC---cCccccEEeCCCCcc
Confidence                     456   457999999999999996 777 766  999999999994 44 666   689999999999999


Q ss_pred             CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccC-------ceEEe
Q 047139          216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL-------EELYL  288 (611)
Q Consensus       216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L  288 (611)
                      ++ +|.   .++      +|++|++++|++++ +|. +.  ++|++|++++|.++ .+|. +..  +|       ++|++
T Consensus       153 ~~-lp~---~l~------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L  214 (571)
T 3cvr_A          153 TM-LPE---LPT------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC  214 (571)
T ss_dssp             SC-CCC---CCT------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred             Cc-CCC---cCC------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence            87 444   334      99999999999996 777 66  89999999999998 7777 654  77       99999


Q ss_pred             cCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139          289 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL  329 (611)
Q Consensus       289 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  329 (611)
                      ++|.++ .+|..+..+++|+.|+|++|.+++.+|. .+..+
T Consensus       215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l  253 (571)
T 3cvr_A          215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE-SLSQQ  253 (571)
T ss_dssp             CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH-HHHHH
T ss_pred             CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHh
Confidence            999998 5888888899999999999999998776 45544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2.1e-19  Score=179.69  Aligned_cols=191  Identities=28%  Similarity=0.385  Sum_probs=160.6

Q ss_pred             CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139           82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL  161 (611)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  161 (611)
                      .+++.+++++              +.+.. ++ .+..+++|++|++++|.++           .++. +.++++|++|++
T Consensus        41 ~~L~~L~l~~--------------~~i~~-l~-~~~~l~~L~~L~L~~n~i~-----------~~~~-~~~l~~L~~L~L   92 (308)
T 1h6u_A           41 DGITTLSAFG--------------TGVTT-IE-GVQYLNNLIGLELKDNQIT-----------DLAP-LKNLTKITELEL   92 (308)
T ss_dssp             HTCCEEECTT--------------SCCCC-CT-TGGGCTTCCEEECCSSCCC-----------CCGG-GTTCCSCCEEEC
T ss_pred             CCcCEEEeeC--------------CCccC-ch-hhhccCCCCEEEccCCcCC-----------CChh-HccCCCCCEEEc
Confidence            4678888888              55554 33 6888999999999888775           3444 899999999999


Q ss_pred             cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEcc
Q 047139          162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELG  241 (611)
Q Consensus       162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls  241 (611)
                      ++|.+++ ++ .+..+++|++|++++|++ .+ ++ .+.++++|++|++++|.+++..+  +..++      +|++|+++
T Consensus        93 ~~n~l~~-~~-~~~~l~~L~~L~l~~n~l-~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~l~  159 (308)
T 1h6u_A           93 SGNPLKN-VS-AIAGLQSIKTLDLTSTQI-TD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLT------NLQYLSIG  159 (308)
T ss_dssp             CSCCCSC-CG-GGTTCTTCCEEECTTSCC-CC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECC
T ss_pred             cCCcCCC-ch-hhcCCCCCCEEECCCCCC-CC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCC------CccEEEcc
Confidence            9999985 44 699999999999999994 43 44 38999999999999999987655  66666      99999999


Q ss_pred             CCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          242 YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       242 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      +|.+++. +. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          160 NAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            9999854 33 88999999999999999854 33 8899999999999999986543  8899999999999999876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=4.7e-20  Score=198.00  Aligned_cols=186  Identities=26%  Similarity=0.389  Sum_probs=85.4

Q ss_pred             ceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEcc
Q 047139          358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLS  437 (611)
Q Consensus       358 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls  437 (611)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|++++ +|. +.. .++.|++ 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~L-  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDV-  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEEC-
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc-CCCEEEC-
Confidence            45555555555443 33332  144555555555554 333    123445555555555543 333 221 4444444 


Q ss_pred             CCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEE
Q 047139          438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLV  517 (611)
Q Consensus       438 ~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~  517 (611)
                                               ++|.+++ +|.   .+++|++|++++|+++.         +|.   .+++|++|+
T Consensus       128 -------------------------s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~  166 (571)
T 3cvr_A          128 -------------------------DNNQLTM-LPE---LPALLEYINADNNQLTM---------LPE---LPTSLEVLS  166 (571)
T ss_dssp             -------------------------CSSCCSC-CCC---CCTTCCEEECCSSCCSC---------CCC---CCTTCCEEE
T ss_pred             -------------------------CCCcCCC-CCC---cCccccEEeCCCCccCc---------CCC---cCCCcCEEE
Confidence                                     5555543 333   34455555555544431         222   234455555


Q ss_pred             CcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCC-------cEEECcCCcCcccCCccccCCCCCCEee
Q 047139          518 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL-------SILRLRSNHFNGTIPSELCKLSALHILD  590 (611)
Q Consensus       518 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~L~  590 (611)
                      |++|++++ +|. +.  ++|+.|+|++|+|+ .+|. +.   .+|       +.|++++|+|+ .+|..+..+++|+.|+
T Consensus       167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII  236 (571)
T ss_dssp             CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred             CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence            55555553 343 33  45555555555554 4444 21   133       55555555555 3455444455555555


Q ss_pred             ccCCcCccCCCccccc
Q 047139          591 LSHNNLLGPIPYCVGD  606 (611)
Q Consensus       591 ls~n~l~g~iP~~~~~  606 (611)
                      +++|++++.+|..+.+
T Consensus       237 L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          237 LEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCSSSCCHHHHHHHHH
T ss_pred             eeCCcCCCcCHHHHHH
Confidence            5555555555544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=7.4e-19  Score=179.21  Aligned_cols=162  Identities=23%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             cccCCCCCCEEEccCCCCCCCCC-ccCCCCCCCCE-EEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIP-DGFSSLNSLQL-LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL  226 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~-L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  226 (611)
                      .|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++|+ +....|..+.++++|++|++++|.+.+..+..+...
T Consensus        49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhccc
Confidence            44555555555555555443333 23444444443 2333344 333334444555555555555555544433333222


Q ss_pred             cccCCCCCCcEEEccC-CCCCccCCcccCCCC-CCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC-cCCCC
Q 047139          227 SECINSSSLARLELGY-NQLTGNLPISLGYLK-NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP-ESFGQ  303 (611)
Q Consensus       227 ~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~  303 (611)
                      .      ++..+++.+ +.+....+..+..+. .+++|++++|+++ .+|.......+|+++++.+++..+.+| ..|.+
T Consensus       128 ~------~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          128 L------QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             S------SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             c------hhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence            2      444444433 233322223333332 3444555555544 233333333444555544322222222 23444


Q ss_pred             CCCCCEEEccCCccc
Q 047139          304 LSAIRVLELSDNQWE  318 (611)
Q Consensus       304 l~~L~~L~L~~n~l~  318 (611)
                      +++|++|++++|+++
T Consensus       201 l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          201 ASGPVILDISRTRIH  215 (350)
T ss_dssp             EECCSEEECTTSCCC
T ss_pred             CcccchhhcCCCCcC
Confidence            455555555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=7.5e-19  Score=165.17  Aligned_cols=177  Identities=26%  Similarity=0.299  Sum_probs=144.4

Q ss_pred             EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139          136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF  215 (611)
Q Consensus       136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  215 (611)
                      +.+++.++ .+|..+  .++|++|++++|++++..+..++++++|++|++++|+ +.+..+..+.++++|++|++++|.+
T Consensus        13 ~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           13 ECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             ECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC
Confidence            33333333 345433  4689999999999997777778999999999999999 5555556678999999999999999


Q ss_pred             CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc
Q 047139          216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG  295 (611)
Q Consensus       216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  295 (611)
                      ++..+..+..++      +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        89 ~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           89 QSLPNGVFDKLT------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CccCHhHhcCcc------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            988777777777      99999999999997777778899999999999999997666668899999999999997764


Q ss_pred             CCCcCCCCCCCCCEEEccCCccccccChhhhcCCC
Q 047139          296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT  330 (611)
Q Consensus       296 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  330 (611)
                             .++.|+.|+++.|+++|.+|. .++.++
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~-~~~~l~  189 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRN-SAGSVA  189 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBC-TTSSBC
T ss_pred             -------CCCCHHHHHHHHHhCCceeec-cCcccc
Confidence                   456789999999999998886 455443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.6e-18  Score=165.39  Aligned_cols=18  Identities=22%  Similarity=0.427  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCcccEEecC
Q 047139           62 SSWVGEDCCSWRGVGCNN   79 (611)
Q Consensus        62 ~~W~~~~~c~w~gv~c~~   79 (611)
                      ..|.+...|.|++|.|..
T Consensus        11 ~~~~~~~~Cs~~~v~c~~   28 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS   28 (229)
T ss_dssp             CCCCTTCEEETTEEECTT
T ss_pred             ccCCCCCEEeCCEeEccC
Confidence            345788889999999964

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=2.1e-20  Score=208.16  Aligned_cols=237  Identities=20%  Similarity=0.200  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHhcCCCCC-CCCCCC--CCCCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCcc
Q 047139           39 CKEVEREALLQFKQNLTDPS-GRLSSW--VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPS  115 (611)
Q Consensus        39 ~~~~~~~~ll~~k~~~~~~~-~~~~~W--~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~  115 (611)
                      ....+++++.++..+...+. ..-..|  .....+.|.++.+..  ++++.+++.+              +.+...    
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~--------------n~~~~~----  188 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA--------------NGKDEA----  188 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC--------------CCCCcc----
Confidence            56678899999987764221 223457  344567899988864  7899999977              444441    


Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                        ....++.++|+.+.+..++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.+ + .+
T Consensus       189 --~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~l  262 (727)
T 4b8c_D          189 --NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-EL  262 (727)
T ss_dssp             ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CC
T ss_pred             --hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-cc
Confidence              23346778889999999998888877 67788999999999999999998 7888888999999999999995 4 78


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      |..++++++|++|+|++|.++ .+|..++.++      +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|.
T Consensus       263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            999999999999999999999 6788888887      9999999999998 7898999999999999999999998888


Q ss_pred             CccCccc-CceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139          276 SLGNLTF-LEELYLTSNQMNGKFPESFGQLSAIRVLELSDN  315 (611)
Q Consensus       276 ~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  315 (611)
                      .+..+.. ...+++++|.+++.+|..      |+.|+++.|
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             HHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            7765432 335789999999888764      455666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=8.2e-18  Score=159.33  Aligned_cols=118  Identities=22%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139          199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG  278 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  278 (611)
                      +.++++|++|++++|.+++..+..+..++      +|++|++++|++++..+..|..+++|++|++++|++++..|..+.
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGAS------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI  126 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCC------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence            44455555555555555544444455444      556666666666555555566666666677777766666666666


Q ss_pred             CcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccC
Q 047139          279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT  322 (611)
Q Consensus       279 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  322 (611)
                      .+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+
T Consensus       127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77777777777777776666677777777777777777765544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.6e-18  Score=167.80  Aligned_cols=172  Identities=28%  Similarity=0.356  Sum_probs=121.8

Q ss_pred             cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccc
Q 047139          117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS  196 (611)
Q Consensus       117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  196 (611)
                      ..+++|++|++++|.++           .++ .+..+++|++|++++|++++..+  +.++++|++|++++|.+ .+ + 
T Consensus        43 ~~l~~L~~L~l~~~~i~-----------~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~-~-  105 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-----------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KD-L-  105 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CC-G-
T ss_pred             hhcCcccEEEccCCCcc-----------cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CC-C-
Confidence            45667777777776654           223 37778888888888888875433  88888888888888884 32 3 


Q ss_pred             ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC
Q 047139          197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS  276 (611)
Q Consensus       197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  276 (611)
                      ..+.++++|++|++++|.+++.  ..+..++      +|++|++++|++++.  ..+..+++|++|++++|.+++..|  
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--  173 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  173 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC--GGGGGCT------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             hhhccCCCCCEEECCCCcCCCC--hhhcCCC------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence            3477888888888888887764  3455554      788888888877754  566777778888888777775433  


Q ss_pred             ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus       174 l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            7777777777777777764 33 36777777777777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1.1e-17  Score=170.59  Aligned_cols=241  Identities=15%  Similarity=0.086  Sum_probs=118.1

Q ss_pred             cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC-cCCCCCCCCCE-EEcc
Q 047139          236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP-ESFGQLSAIRV-LELS  313 (611)
Q Consensus       236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~  313 (611)
                      ++++.++++++ .+|..+  .+++++|+|++|+++..-+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666666 555544  2456667777766664333456666666666666666654443 24556665554 3444


Q ss_pred             CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCc-c
Q 047139          314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA-S  392 (611)
Q Consensus       314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n-~  392 (611)
                      .|++....+. .+.++++|++|++++|..                           ....+..+....++..+++.++ +
T Consensus        89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~~~~l~~l~l~~~~~  140 (350)
T 4ay9_X           89 ANNLLYINPE-AFQNLPNLQYLLISNTGI---------------------------KHLPDVHKIHSLQKVLLDIQDNIN  140 (350)
T ss_dssp             ETTCCEECTT-SBCCCTTCCEEEEEEECC---------------------------SSCCCCTTCCBSSCEEEEEESCTT
T ss_pred             CCcccccCch-hhhhcccccccccccccc---------------------------ccCCchhhcccchhhhhhhccccc
Confidence            4555543232 455555555555555322                           2111222222233333444332 2


Q ss_pred             cccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCC-Ceeeccc
Q 047139          393 ISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF-NSINGSI  471 (611)
Q Consensus       393 l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~-n~l~~~~  471 (611)
                      +....+..+......++.|++++|+++                       ...+..+. ..  .++++++++ |.++...
T Consensus       141 i~~l~~~~f~~~~~~l~~L~L~~N~i~-----------------------~i~~~~f~-~~--~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          141 IHTIERNSFVGLSFESVILWLNKNGIQ-----------------------EIHNSAFN-GT--QLDELNLSDNNNLEELP  194 (350)
T ss_dssp             CCEECTTSSTTSBSSCEEEECCSSCCC-----------------------EECTTSST-TE--EEEEEECTTCTTCCCCC
T ss_pred             cccccccchhhcchhhhhhcccccccc-----------------------CCChhhcc-cc--chhHHhhccCCcccCCC
Confidence            221111122222223444444444444                       22221121 11  224455554 4444333


Q ss_pred             ccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 047139          472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN  545 (611)
Q Consensus       472 ~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  545 (611)
                      +..|..+++|++|++++|+|+.+.         ..  .+.+|+.|.+.++.-...+| .+.++++|+.++++++
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp---------~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLP---------SY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCC---------SS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             HHHhccCcccchhhcCCCCcCccC---------hh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            345677777777777777766333         21  13456666655554333555 3667777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.4e-17  Score=157.64  Aligned_cols=135  Identities=24%  Similarity=0.207  Sum_probs=75.7

Q ss_pred             CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCC
Q 047139          179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN  258 (611)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  258 (611)
                      +|++|++++|+ +.+..+..+.++++|++|++++|.+++..|..+..++      +|++|++++|.++...+..|..+++
T Consensus        33 ~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~f~~l~~  105 (220)
T 2v9t_B           33 TITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------SLNSLVLYGNKITELPKSLFEGLFS  105 (220)
T ss_dssp             TCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS------SCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc------CCCEEECCCCcCCccCHhHccCCCC
Confidence            34444444444 2222223344444444444444444444444444444      5555555555555333344556666


Q ss_pred             CcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139          259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF  320 (611)
Q Consensus       259 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  320 (611)
                      |++|++++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            66666666666666666666667777777777777665555666777777777777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.6e-18  Score=159.96  Aligned_cols=134  Identities=19%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             cccCCCCeeecccc-cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          459 DLDISFNSINGSIP-QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       459 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      +|++++|.+++..+ ..|..+++|++|++++|+++.+        .+..+..+++|++|+|++|++++..+..|..+++|
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI--------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE--------CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            44457777776544 3467788888888887776532        23355567788888888888887777778888888


Q ss_pred             CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139          538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP  601 (611)
                      ++|+|++|++++..|..+.. +++|++|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus       108 ~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            88888888888665666554 7888888888888887777788888888888888888776554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.6e-17  Score=157.33  Aligned_cols=134  Identities=23%  Similarity=0.279  Sum_probs=88.3

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS  233 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~  233 (611)
                      +++++|++++|.+++..+..|..+++|++|++++|+ +.+..|..|.++++|++|++++|.++...+..+..++      
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------  104 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------  104 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------
Confidence            456666666666665555566666666666666666 4444556666666666666666666655555555555      


Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  294 (611)
                      +|++|++++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6777777777776666666777777777777777777655556667777777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.6e-17  Score=155.23  Aligned_cols=136  Identities=29%  Similarity=0.326  Sum_probs=80.1

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS  233 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~  233 (611)
                      ++|++|++++|.+++..|..|.++++|++|++++|++ ....+..+.++++                             
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~-----------------------------   89 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ-----------------------------   89 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT-----------------------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCC-----------------------------
Confidence            5566666666666655555566666666666666652 2222233344444                             


Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                       |++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        90 -L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           90 -LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             -CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             -cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence             555555555554444444555666666666666666 556666666677777777776665555556667777777777


Q ss_pred             CCcccccc
Q 047139          314 DNQWEGFI  321 (611)
Q Consensus       314 ~n~l~~~~  321 (611)
                      +|.+.+..
T Consensus       168 ~N~~~c~c  175 (229)
T 3e6j_A          168 GNPWDCEC  175 (229)
T ss_dssp             TSCBCTTB
T ss_pred             CCCccCCc
Confidence            77766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=7.8e-18  Score=166.76  Aligned_cols=171  Identities=26%  Similarity=0.306  Sum_probs=143.4

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|++ .+ ++. +.++++|++|++++|.+++.  ..+..++  
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l-~~-~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~--  112 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TD-IKP-LANLKNLGWLFLDENKVKDL--SSLKDLK--  112 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCTTCCEEECCSSCCCCG--GGGTTCT--
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCcc-CC-Ccc-cccCCCCCEEECCCCcCCCC--hhhccCC--
Confidence            5678999999999999984 44 488999999999999994 44 343 89999999999999999863  2366665  


Q ss_pred             CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139          230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV  309 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  309 (611)
                          +|++|++++|++++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++
T Consensus       113 ----~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          113 ----KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             ----TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ----CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence                999999999999853  5688899999999999999865  568899999999999999986544  889999999


Q ss_pred             EEccCCccccccChhhhcCCCCCCEEEcCccCC
Q 047139          310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSN  342 (611)
Q Consensus       310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~  342 (611)
                      |++++|.+++. +  .+..+++|+.|++++|..
T Consensus       183 L~L~~N~i~~l-~--~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          183 LYLSKNHISDL-R--ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCBC-G--GGTTCTTCSEEEEEEEEE
T ss_pred             EECCCCcCCCC-h--hhccCCCCCEEECcCCcc
Confidence            99999999863 3  478889999999988543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.5e-17  Score=180.47  Aligned_cols=174  Identities=28%  Similarity=0.340  Sum_probs=137.2

Q ss_pred             ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139          116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL  195 (611)
Q Consensus       116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  195 (611)
                      +..+++|+.|++++|.++           .+| .+..+++|++|+|++|.+.+..|  +..+++|++|+|++|.+ .+ +
T Consensus        39 ~~~L~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~-l  102 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-----------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KD-L  102 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-----------CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CC-C
T ss_pred             hhcCCCCCEEECcCCCCC-----------CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CC-C
Confidence            456777888887777664           233 47888999999999998885544  88889999999999984 33 3


Q ss_pred             cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                       ..+..+++|++|++++|.+.+.  ..+..++      +|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..| 
T Consensus       103 -~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A          103 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             -TTSTTCTTCCEEECTTSCCCCC--GGGGGCT------TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             -hhhccCCCCCEEEecCCCCCCC--ccccCCC------ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence             3688889999999999988864  3455555      899999999988854  677888899999999998886655 


Q ss_pred             CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139          276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF  320 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  320 (611)
                       +..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|.+.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence             88888999999999988853  3588888999999999888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.1e-17  Score=171.28  Aligned_cols=158  Identities=26%  Similarity=0.140  Sum_probs=88.4

Q ss_pred             CCCEEEccCCCCCCCCCccCC-CCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139          155 NLLSLDLSSNDLQGDIPDGFS-SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS  233 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~  233 (611)
                      .+++|+|++|++++..+..+. ++++|++|++++|+ +.+..+..|.++++|++|++++|.+++..+..+..++      
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------  112 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------  112 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc------
Confidence            355566666666554444454 55666666666665 3333344555566666666666665555555555554      


Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc---cCcccCceEEecCCccccCCCcCCCCCCC--CC
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL---GNLTFLEELYLTSNQMNGKFPESFGQLSA--IR  308 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~  308 (611)
                      +|++|+|++|++++..|..|..+++|++|+|++|++++..+..+   ..+++|++|+|++|.+++..+..+..++.  ++
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            66666666666665555666666666666666666653222222   34666666666666666433344444544  36


Q ss_pred             EEEccCCcccc
Q 047139          309 VLELSDNQWEG  319 (611)
Q Consensus       309 ~L~L~~n~l~~  319 (611)
                      .|+|++|.+..
T Consensus       193 ~l~l~~N~~~C  203 (361)
T 2xot_A          193 GLYLHNNPLEC  203 (361)
T ss_dssp             TEECCSSCEEC
T ss_pred             eEEecCCCccC
Confidence            66777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1e-17  Score=155.88  Aligned_cols=154  Identities=16%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             cCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccC
Q 047139          151 FNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI  230 (611)
Q Consensus       151 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~  230 (611)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+ .  .+..+.++++|++|++++|.+++..+..++.++   
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence            44455555555555555 334 355555555555555542 1  223455555555555555555554444444444   


Q ss_pred             CCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139          231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL  310 (611)
Q Consensus       231 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  310 (611)
                         +|++|++++|++++..|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus       113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL  186 (197)
T ss_dssp             ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred             ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence               55555555555555555555555566666666665222333 35555666666666666553 22 45555666666


Q ss_pred             EccCCccc
Q 047139          311 ELSDNQWE  318 (611)
Q Consensus       311 ~L~~n~l~  318 (611)
                      ++++|++.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            66666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=7.1e-17  Score=165.21  Aligned_cols=173  Identities=26%  Similarity=0.298  Sum_probs=146.3

Q ss_pred             CEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC-CCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139          157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL  235 (611)
Q Consensus       157 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L  235 (611)
                      ++++++++.++ .+|..+.  ..+++|+|++|+ +++..+..+. ++++|++|++++|.+++..+..+..++      +|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L   90 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------NL   90 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCC------CC
Confidence            67888888888 5776554  468999999999 5665666676 999999999999999998888888887      99


Q ss_pred             cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCC---CCCCCCCEEEc
Q 047139          236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESF---GQLSAIRVLEL  312 (611)
Q Consensus       236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L  312 (611)
                      ++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+..+   ..+++|+.|+|
T Consensus        91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            999999999998878889999999999999999998888899999999999999999996444444   57899999999


Q ss_pred             cCCccccccChhhhcCCCC--CCEEEcCcc
Q 047139          313 SDNQWEGFITDAHLRNLTS--LEELSLIKT  340 (611)
Q Consensus       313 ~~n~l~~~~~~~~l~~l~~--L~~L~l~~~  340 (611)
                      ++|++.+ ++...+..++.  ++.|++.+|
T Consensus       171 ~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          171 SSNKLKK-LPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCC-CCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCCCCc-cCHHHhhhccHhhcceEEecCC
Confidence            9999986 55557777776  377888884

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=9.7e-17  Score=149.24  Aligned_cols=154  Identities=22%  Similarity=0.358  Sum_probs=129.6

Q ss_pred             cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccc
Q 047139          117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS  196 (611)
Q Consensus       117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  196 (611)
                      ..+++|++|++++|.++           .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|. +.+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~-l~~~~~  105 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-----------DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKD-VTSDKI  105 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-----------CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTT-CBGGGS
T ss_pred             hhcCCccEEeccCCCcc-----------ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCc-cCcccC
Confidence            56677777777766554           455 6899999999999999776 3 3479999999999999999 676778


Q ss_pred             ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139          197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPP  275 (611)
Q Consensus       197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  275 (611)
                      ..++++++|++|++++|.+++..+..+..++      +|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ 
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-  175 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILTKINTLP------KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-  175 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHHHHhhCC------CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence            8999999999999999999998888898887      99999999998 55 555 68999999999999999985 44 


Q ss_pred             CccCcccCceEEecCCcccc
Q 047139          276 SLGNLTFLEELYLTSNQMNG  295 (611)
Q Consensus       276 ~l~~l~~L~~L~L~~n~l~~  295 (611)
                      .+..+++|++|++++|++.+
T Consensus       176 ~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TGGGCSSCCEEEECBC----
T ss_pred             HhccCCCCCEEEeeCcccCC
Confidence            68899999999999999764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3.1e-17  Score=178.06  Aligned_cols=171  Identities=26%  Similarity=0.298  Sum_probs=146.9

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +..+++|+.|++++|.+. .+| .+..+++|++|+|++|. +.+..+  +.++++|++|++++|.+.+.  ..+..++  
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~--  109 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLK--  109 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCT--
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCC--hhhccCC--
Confidence            577899999999999998 445 58999999999999999 454433  88999999999999999863  2455555  


Q ss_pred             CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139          230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV  309 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  309 (611)
                          +|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|++|+|++|.+.+..|  +..+++|+.
T Consensus       110 ----~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          110 ----KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             ----TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ----CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence                999999999999853  5688999999999999999865  568999999999999999997655  899999999


Q ss_pred             EEccCCccccccChhhhcCCCCCCEEEcCccCC
Q 047139          310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSN  342 (611)
Q Consensus       310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~  342 (611)
                      |+|++|.+.+. +  .+..+++|+.|++++|..
T Consensus       180 L~Ls~N~i~~l-~--~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          180 LYLSKNHISDL-R--ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EECCSSCCCBC-G--GGTTCTTCSEEECCSEEE
T ss_pred             EECcCCCCCCC-h--HHccCCCCCEEEccCCcC
Confidence            99999999874 3  589999999999999544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=3.8e-19  Score=191.95  Aligned_cols=108  Identities=24%  Similarity=0.378  Sum_probs=74.2

Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcC
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM  559 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l  559 (611)
                      .|+.|++++|.++         .+|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+.. +
T Consensus       442 ~L~~L~Ls~n~l~---------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLT---------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN-L  507 (567)
T ss_dssp             TCSEEECTTSCCS---------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-C
T ss_pred             CceEEEecCCCCC---------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-C
Confidence            4667777776655         2444 556777777777777777 667777777777777777777774 56 4544 7


Q ss_pred             CCCcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCccCCC
Q 047139          560 PSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLLGPIP  601 (611)
Q Consensus       560 ~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~g~iP  601 (611)
                      ++|++|++++|++++.. |..+..+++|++|++++|++++.+|
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            77777777777777665 7777777777777777777776655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.3e-19  Score=195.49  Aligned_cols=197  Identities=18%  Similarity=0.199  Sum_probs=139.9

Q ss_pred             cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCC-------------CCCCCCccCCCCCCCCEE
Q 047139          117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSND-------------LQGDIPDGFSSLNSLQLL  183 (611)
Q Consensus       117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------~~~~~p~~l~~l~~L~~L  183 (611)
                      ...++|+.|++++|+++           .+|..++++++|+.|++++|.             +.+.+|..++.+++|+.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-----------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-----------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-----------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-----------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence            45566666666655443           678888889999999887664             456677777888888888


Q ss_pred             E-ccCCCCCcccccc------cCCC--CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccC
Q 047139          184 D-LSGNSFLEGQLSR------NLGT--LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG  254 (611)
Q Consensus       184 ~-Ls~n~~~~~~~~~------~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  254 (611)
                      + ++.|.+ . .++.      .+..  ...|++|++++|.+++ +|. ++.++      +|+.|++++|.++ .+|..++
T Consensus       415 ~~l~~n~~-~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~------~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          415 DPMRAAYL-D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL------LVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             CGGGHHHH-H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT------TCCEEECCSSCCC-CCCGGGG
T ss_pred             cchhhccc-c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc------cCcEeecCccccc-ccchhhh
Confidence            7 555431 1 0110      0100  1247888888888876 454 66666      8888888888888 7788888


Q ss_pred             CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCC-CcCCCCCCCCCEEEccCCccccccCh--hhhcCCCC
Q 047139          255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGFITD--AHLRNLTS  331 (611)
Q Consensus       255 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~--~~l~~l~~  331 (611)
                      .+++|++|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..+.  ..+..+++
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            88888888888888885 56 6888888888888888888765 77888888888888888888775442  23445777


Q ss_pred             CCEEEc
Q 047139          332 LEELSL  337 (611)
Q Consensus       332 L~~L~l  337 (611)
                      |+.|++
T Consensus       562 L~~L~l  567 (567)
T 1dce_A          562 VSSILT  567 (567)
T ss_dssp             CSEEEC
T ss_pred             cCccCC
Confidence            777753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.2e-16  Score=155.57  Aligned_cols=152  Identities=25%  Similarity=0.320  Sum_probs=115.0

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      .+..+++|++|++++|.++ .+| .+..+++|++|++++|++ .+ ++. +.++++|++|++++|++++..+ . .. + 
T Consensus        36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i-~~-~~~-l~~l~~L~~L~L~~N~l~~l~~-~-~~-~-  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI-SD-LSP-LKDLTKLEELSVNRNRLKNLNG-I-PS-A-  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCSSCCEEECCSSCCSCCTT-C-CC-S-
T ss_pred             chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc-CC-Chh-hccCCCCCEEECCCCccCCcCc-c-cc-C-
Confidence            4677888888888888887 455 678888888888888884 43 333 8888888888888888876332 1 11 2 


Q ss_pred             cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                           +|++|++++|++++.  ..+..+++|++|++++|++++. | .+..+++|++|++++|.+++.  ..+..+++|+
T Consensus       107 -----~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          107 -----CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             -----SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             -----cccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence                 888888888888753  3577888888888888888754 3 577888888888888888765  5677888888


Q ss_pred             EEEccCCccccc
Q 047139          309 VLELSDNQWEGF  320 (611)
Q Consensus       309 ~L~L~~n~l~~~  320 (611)
                      .|++++|.+.+.
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            888888887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.4e-16  Score=145.77  Aligned_cols=132  Identities=24%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             ceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc-chhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139          432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ-SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL  510 (611)
Q Consensus       432 ~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l  510 (611)
                      +.+++++|.++ .+|..+..    .+++|++++|.+++..+. .|..+++|++|++++|+++        +..|..+..+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--------GIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--------CBCTTTTTTC
T ss_pred             CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--------CcCHhHcCCc
Confidence            56777777764 34433221    224444477776654443 3666677777766666544        2334555556


Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCC
Q 047139          511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP  577 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p  577 (611)
                      ++|++|+|++|++++..|..|..+++|++|++++|++++..|..+.. +++|++|++++|++++..+
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSGG
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCcCc
Confidence            66777777777776666666666667777777777766655655544 6667777777776665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=9.1e-16  Score=149.43  Aligned_cols=159  Identities=23%  Similarity=0.292  Sum_probs=131.3

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      +.+.+..  .+..+++|++|++++|.++           .+| .+..+++|++|++++|++++. |. ++++++|++|++
T Consensus        29 ~~i~~~~--~~~~l~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           29 QSVTDLV--SQKELSGVQNFNGDNSNIQ-----------SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV   92 (263)
T ss_dssp             SCTTSEE--CHHHHTTCSEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred             CCccccc--chhhcCcCcEEECcCCCcc-----------cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence            4444433  5778889999988888775           345 688999999999999999955 44 999999999999


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW  265 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  265 (611)
                      ++|++ ++ +|. +.. ++|++|++++|.+++.  ..+..++      +|++|++++|++++. + .+..+++|++|+++
T Consensus        93 ~~N~l-~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~------~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           93 NRNRL-KN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLK------NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLH  158 (263)
T ss_dssp             CSSCC-SC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCT------TCCEEECTTSCCCBC-G-GGGGCTTCCEEECT
T ss_pred             CCCcc-CC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcc------cccEEECCCCcCCCC-h-HHccCCCCCEEECC
Confidence            99995 43 444 333 9999999999999874  3466666      999999999999864 4 68899999999999


Q ss_pred             CCcccccCCCCccCcccCceEEecCCccccC
Q 047139          266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGK  296 (611)
Q Consensus       266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  296 (611)
                      +|++++.  ..+..+++|++|++++|.+.+.
T Consensus       159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999976  6789999999999999999865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=2.7e-17  Score=183.07  Aligned_cols=145  Identities=22%  Similarity=0.320  Sum_probs=104.8

Q ss_pred             CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccC
Q 047139          430 FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS  509 (611)
Q Consensus       430 ~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~  509 (611)
                      .++.|++++|.+. .+|..+..+..|  ++|+|++|.++ .+|..|+++++|++|+|++|.|+         .+|..++.
T Consensus       225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~  291 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISANIFKYDFL--TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---------SLPAELGS  291 (727)
T ss_dssp             CCCEEECTTSCCS-CCCGGGGGCCSC--SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---------SCCSSGGG
T ss_pred             CCcEEECCCCCCC-CCChhhcCCCCC--CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---------ccChhhcC
Confidence            5677777777766 455444455544  67777999888 78888888999999999888765         67778888


Q ss_pred             cCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139          510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL  589 (611)
Q Consensus       510 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  589 (611)
                      +++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+...-..+..+++++|.++|.+|..+      +.|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l  364 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFI  364 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------cee
Confidence            889999999999887 7788888999999999999999888887775411223347888999988887654      455


Q ss_pred             eccCC
Q 047139          590 DLSHN  594 (611)
Q Consensus       590 ~ls~n  594 (611)
                      ++++|
T Consensus       365 ~l~~n  369 (727)
T 4b8c_D          365 EINTD  369 (727)
T ss_dssp             -----
T ss_pred             Eeecc
Confidence            66666

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=2.5e-15  Score=138.91  Aligned_cols=89  Identities=29%  Similarity=0.323  Sum_probs=56.0

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      +|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            55555555555555555556666666666666666665555556666666666666666666666666666677777777


Q ss_pred             CCccccccC
Q 047139          314 DNQWEGFIT  322 (611)
Q Consensus       314 ~n~l~~~~~  322 (611)
                      +|.+.+..+
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            776665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.8e-15  Score=136.66  Aligned_cols=132  Identities=23%  Similarity=0.207  Sum_probs=84.5

Q ss_pred             CCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139          154 TNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       154 ~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~  232 (611)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|. +.+.  ..+..+++|++|++++|.+++.+|..+..++     
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence            56677777777665 5666666667777777777776 3332  5566677777777777777666666665555     


Q ss_pred             CCCcEEEccCCCCCccC-CcccCCCCCCcEEEccCCcccccCC---CCccCcccCceEEecCCccc
Q 047139          233 SSLARLELGYNQLTGNL-PISLGYLKNLRYLELWYNSFLGSIP---PSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~  294 (611)
                       +|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence             6777777777766431 2566666677777777776664333   24566666666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=7.9e-16  Score=136.07  Aligned_cols=125  Identities=20%  Similarity=0.252  Sum_probs=97.3

Q ss_pred             CcccCCCCeee-cccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139          458 RDLDISFNSIN-GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL  536 (611)
Q Consensus       458 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  536 (611)
                      ++|++++|.++ +.+|..+..+++|++|++++|.++++          ..++.+++|++|++++|.+++.+|..+..+++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----------hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            44555888887 67787788888899998888887643          34556888999999999888778888888888


Q ss_pred             CCEEECCCCcCccc-ChhHHhhcCCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139          537 MDSLDLGENQLSGN-IPAWIGESMPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH  593 (611)
Q Consensus       537 L~~L~Ls~N~l~~~-ip~~l~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~  593 (611)
                      |++|++++|++++. .|..+.. +++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCEEECCCCcCCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999988852 2355554 8889999999998886655   4678888888888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2e-15  Score=136.39  Aligned_cols=138  Identities=25%  Similarity=0.194  Sum_probs=114.6

Q ss_pred             CCCCCEEECCCCCCCeEEccCCcCc-cCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          119 LKDLEYLDLSLNNFKVLDLSNNGFN-STLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       119 l~~L~~L~ls~n~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      .++|++|++++|          .++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|+ +.+.+|.
T Consensus        23 ~~~L~~L~l~~n----------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~   89 (168)
T 2ell_A           23 PAAVRELVLDNC----------KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR-IFGGLDM   89 (168)
T ss_dssp             TTSCSEEECCSC----------BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC-CCSCCCH
T ss_pred             cccCCEEECCCC----------CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc-CchHHHH
Confidence            355666666555          445 67888899999999999999999865  789999999999999999 5666788


Q ss_pred             cCCCCCCCCEEEcccccCCCcc-chhhhcCcccCCCCCCcEEEccCCCCCccCC---cccCCCCCCcEEEccCCcccccC
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEV-SDFIDGLSECINSSSLARLELGYNQLTGNLP---ISLGYLKNLRYLELWYNSFLGSI  273 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~  273 (611)
                      .+.++++|++|++++|.+++.. +..+..++      +|++|++++|.+++..+   ..+..+++|++|++++|.+. .+
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~  162 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLE------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EA  162 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGGGGGSSCS------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BC
T ss_pred             HHhhCCCCCEEeccCCccCcchhHHHHhcCC------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hc
Confidence            8888999999999999998753 36677776      99999999999996554   48899999999999999887 55


Q ss_pred             CCC
Q 047139          274 PPS  276 (611)
Q Consensus       274 p~~  276 (611)
                      |.+
T Consensus       163 ~~~  165 (168)
T 2ell_A          163 PDS  165 (168)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.7e-15  Score=133.90  Aligned_cols=127  Identities=22%  Similarity=0.221  Sum_probs=82.2

Q ss_pred             CCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139          154 TNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       154 ~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~  232 (611)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+ .+.  ..++++++|++|++++|.+++.+|..+..++     
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence            56777777777776 56666667777777777777763 332  5566777777777777777766666666555     


Q ss_pred             CCCcEEEccCCCCCcc-CCcccCCCCCCcEEEccCCcccccCC---CCccCcccCceEEec
Q 047139          233 SSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIP---PSLGNLTFLEELYLT  289 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~  289 (611)
                       +|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        89 -~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 -NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence             677777777776642 23556666666666666666664433   245566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=7.2e-15  Score=135.82  Aligned_cols=127  Identities=24%  Similarity=0.329  Sum_probs=69.4

Q ss_pred             ceEEccCCcccccCCCC-CCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139          432 GSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL  510 (611)
Q Consensus       432 ~~l~ls~n~~~~~~p~~-~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l  510 (611)
                      +.+++++|.++. +|.. ..++     ++|++++|.++ .+|..|.++++|++|++++|+|+.+..        ..+..+
T Consensus        13 ~~l~~~~~~l~~-ip~~~~~~l-----~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~--------~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIPRDV-----TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN--------QSFSNM   77 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCCTTC-----CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT--------TTTTTC
T ss_pred             CEEEcCCCCCCc-CCCCCCCCC-----CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH--------hHccCC
Confidence            456666666553 3322 2223     33333666665 455566666666666666665553322        223335


Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139          511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG  574 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~  574 (611)
                      ++|++|+|++|++++..|..|..+++|+.|+|++|+++ .+|...+..+++|+.|++++|++.+
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence            66666666666666555555666666666666666666 3444333336666666666666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1.9e-15  Score=152.52  Aligned_cols=58  Identities=10%  Similarity=0.062  Sum_probs=33.0

Q ss_pred             CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139          256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD  314 (611)
Q Consensus       256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  314 (611)
                      +++|+.+++.+ .++..-+..|.++++|+++++.+|.+....+..|..+.++..+....
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            66666666666 55544444566666666666666666555555565555555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.3e-14  Score=130.60  Aligned_cols=67  Identities=25%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             cCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       253 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      |..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            3334444444444444443333344444444444444444443333334444555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=2.7e-14  Score=144.06  Aligned_cols=213  Identities=14%  Similarity=0.061  Sum_probs=134.2

Q ss_pred             CCCCCEEECCCCCCCeEEccCCcCcc---------CC-CccccC--------CCCCCEEEccCCCCCCCCCccCCCCCCC
Q 047139          119 LKDLEYLDLSLNNFKVLDLSNNGFNS---------TL-PHWLFN--------ITNLLSLDLSSNDLQGDIPDGFSSLNSL  180 (611)
Q Consensus       119 l~~L~~L~ls~n~l~~L~L~~n~l~~---------~~-p~~l~~--------l~~L~~L~L~~n~~~~~~p~~l~~l~~L  180 (611)
                      +++|+.|||++|++.........+.+         .+ +..|.+        +++|+.+++.+ .++..-+.+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            78888888888877622111111111         22 235666        99999999998 8886767789999999


Q ss_pred             CEEEccCCCCCcccccccCCCCCCCCEEEcccccC----CCccchhhhcCccc---------------------------
Q 047139          181 QLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF----SGEVSDFIDGLSEC---------------------------  229 (611)
Q Consensus       181 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~~---------------------------  229 (611)
                      +.+++++|. +....+..|..+.++.++....+..    .......+......                           
T Consensus       127 ~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            999999998 4444556777777777776554211    11011111110000                           


Q ss_pred             -----------------CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCc-eEEecCC
Q 047139          230 -----------------INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE-ELYLTSN  291 (611)
Q Consensus       230 -----------------~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n  291 (611)
                                       ..+++|+.+++++|+++...+..|.++++|+.+++.+| +...-+..|.++++|+ .+++.+ 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                             01347777777777777555566777777777777776 5544555677777777 777766 


Q ss_pred             ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139          292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS  336 (611)
Q Consensus       292 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  336 (611)
                      .++...+..|.++++|+.++++.|.+.. ++...|.++++|+.++
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhc
Confidence            5555555667777777777777777665 3444677777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=7.4e-14  Score=127.21  Aligned_cols=65  Identities=28%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139          255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG  319 (611)
Q Consensus       255 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  319 (611)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            33333444444443333333333344444444444444443222223444444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=9.6e-14  Score=126.46  Aligned_cols=133  Identities=26%  Similarity=0.284  Sum_probs=101.6

Q ss_pred             CCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139          156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL  235 (611)
Q Consensus       156 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L  235 (611)
                      .+.+++++++++ .+|..+.  ++|++|++++|+ +.+..+..++++++|++|++++|.+++..+..+..++      +|
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KL   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------cc
Confidence            467888888887 5564443  688888888888 4555555678888888888888888877777677776      88


Q ss_pred             cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC
Q 047139          236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP  298 (611)
Q Consensus       236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  298 (611)
                      ++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888888888887666677888888888888888885555556778888888888888776443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.2e-14  Score=126.78  Aligned_cols=130  Identities=22%  Similarity=0.228  Sum_probs=70.9

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCC-CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      +.++++|++|++++|.++ .+|. +..+. +|++|++++|.+ .+ + ..+.++++|++|++++|.+++..+..+..++ 
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l-~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI-RK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCC-CE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCC-Cc-c-cccccCCCCCEEECCCCcccccCcchhhcCC-
Confidence            555667777777777766 3343 33333 777777777763 32 2 4566666666666666666654444445554 


Q ss_pred             cCCCCCCcEEEccCCCCCccCCc--ccCCCCCCcEEEccCCcccccCCCC----ccCcccCceEEecCCc
Q 047139          229 CINSSSLARLELGYNQLTGNLPI--SLGYLKNLRYLELWYNSFLGSIPPS----LGNLTFLEELYLTSNQ  292 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~  292 (611)
                           +|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|++|++++|.
T Consensus        89 -----~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 -----DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             -----TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             -----CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence                 5666666666554 3333  4445555555555555554 23332    3344444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=6.6e-14  Score=127.40  Aligned_cols=125  Identities=20%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             CcccCCCCeeecccccchhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139          458 RDLDISFNSINGSIPQSVGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL  536 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  536 (611)
                      ++|++++|.++. +|. +..+ ++|++|++++|.++++          +.++.+++|++|++++|++++..+..+..+++
T Consensus        22 ~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           22 RELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL----------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE----------CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             eEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc----------cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            334446666663 343 3343 3788888877776632          24455778888888888887554444577888


Q ss_pred             CCEEECCCCcCcccChh--HHhhcCCCCcEEECcCCcCcccCCcc----ccCCCCCCEeeccCCcCc
Q 047139          537 MDSLDLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPSE----LCKLSALHILDLSHNNLL  597 (611)
Q Consensus       537 L~~L~Ls~N~l~~~ip~--~l~~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~ls~n~l~  597 (611)
                      |++|++++|+++ .+|.  .+.. +++|++|++++|+++ .+|..    +..+++|++||+++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888888875 5665  4544 788888888888887 45653    677788888888877654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=9.7e-16  Score=142.56  Aligned_cols=149  Identities=19%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             CCceEEccCCcccccCCC------CCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccC
Q 047139          430 FPGSVDLSSNRFEGPIPL------WSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI  503 (611)
Q Consensus       430 ~l~~l~ls~n~~~~~~p~------~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~i  503 (611)
                      .++.++++.+.+.|.+|.      .+..+..+  ++|++++|.+++ +| .+..+++|++|++++|+++         .+
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L--~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~---------~l   85 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKAC--KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------KI   85 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTC--SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC---------SC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCC--CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc---------cc
Confidence            455566666666666554      33333333  445557777664 45 6666777777777766654         34


Q ss_pred             cccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh--HHhhcCCCCcEEECcCCcCcccCCcc--
Q 047139          504 PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPSE--  579 (611)
Q Consensus       504 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~~l~~L~~L~ls~n~l~~~~p~~--  579 (611)
                      |..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++ +|.  .+.. +++|++|++++|++++.+|..  
T Consensus        86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~-l~~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A           86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTT-TTTCSEEEECSCHHHHHHHTTTT
T ss_pred             cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhc-CCCCCEEEecCCccccccccccc
Confidence            4455555667777777777664 34 46666677777777777663 332  3433 677777777777776655542  


Q ss_pred             --------ccCCCCCCEeeccCCcCc
Q 047139          580 --------LCKLSALHILDLSHNNLL  597 (611)
Q Consensus       580 --------l~~l~~L~~L~ls~n~l~  597 (611)
                              +..+++|++||  +|+++
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             hHHHHHHHHHhCCCcEEEC--CcccC
Confidence                    55666777665  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.2e-13  Score=121.98  Aligned_cols=88  Identities=24%  Similarity=0.294  Sum_probs=43.8

Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEee
Q 047139          511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD  590 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  590 (611)
                      ++|++|+|++|++++..|..|..+++|++|+|++|+|+ .+|...+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            34555555555555444455555555555555555555 23333322355555555555555543333455555555555


Q ss_pred             ccCCcCccC
Q 047139          591 LSHNNLLGP  599 (611)
Q Consensus       591 ls~n~l~g~  599 (611)
                      +++|++...
T Consensus       109 L~~N~~~c~  117 (170)
T 3g39_A          109 LLNNPWDCA  117 (170)
T ss_dssp             CCSSCBCTT
T ss_pred             eCCCCCCCC
Confidence            555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=8.5e-16  Score=142.96  Aligned_cols=114  Identities=25%  Similarity=0.253  Sum_probs=69.9

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+ . .+|..+..+++|++|++++|.+++. | .+..++ 
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~-  115 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV-  115 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH-
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC-
Confidence            67777777777777777764 55 667777777777777763 2 4555555566677777777766652 2 344444 


Q ss_pred             cCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCcccccCC
Q 047139          229 CINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGSIP  274 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p  274 (611)
                           +|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus       116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence                 66666666666653221 345555666666666665554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=1e-11  Score=127.93  Aligned_cols=248  Identities=11%  Similarity=0.037  Sum_probs=154.1

Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCc
Q 047139          148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS  227 (611)
Q Consensus       148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  227 (611)
                      ..|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+..+  +...-...|.++++|+.+++..|.++......|. ..
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~  203 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA  203 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence            355554 6888887765 554555567664 6888888763  3333446677888888888888877766666655 23


Q ss_pred             ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCC
Q 047139          228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI  307 (611)
Q Consensus       228 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  307 (611)
                            +|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+ .+.++......|.++++|
T Consensus       204 ------~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L  273 (401)
T 4fdw_A          204 ------GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL  273 (401)
T ss_dssp             ------CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC
T ss_pred             ------ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC
Confidence                  7888888744 66556677778888888888765 44344455665 67888888 344554556677788888


Q ss_pred             CEEEccCCccc----cccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139          308 RVLELSDNQWE----GFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL  383 (611)
Q Consensus       308 ~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  383 (611)
                      +.+++.+|.+.    ..++...|.+|++|+.+.+..    .+..-....+..+.+|+.+.+..+ +...-...|.++ +|
T Consensus       274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence            88888777654    125555778888888887775    233333334445556666666433 343444556666 66


Q ss_pred             CEEEccCcccccccchhHHhcCCCCCEEEccCcc
Q 047139          384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH  417 (611)
Q Consensus       384 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~  417 (611)
                      +.+++.+|......+..+......++.+++..+.
T Consensus       348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            6666666655433333333322345555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=7.2e-13  Score=120.04  Aligned_cols=86  Identities=22%  Similarity=0.274  Sum_probs=43.4

Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEee
Q 047139          511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD  590 (611)
Q Consensus       511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  590 (611)
                      ++|++|+|++|++++..|..|.++++|++|+|++|+|+ .+|...+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            34555555555555444555555555555555555555 23333322355555555555555533333355555555555


Q ss_pred             ccCCcCc
Q 047139          591 LSHNNLL  597 (611)
Q Consensus       591 ls~n~l~  597 (611)
                      +++|++.
T Consensus       112 L~~N~~~  118 (174)
T 2r9u_A          112 LYNNPWD  118 (174)
T ss_dssp             CCSSCBC
T ss_pred             eCCCCcc
Confidence            5555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=4.1e-11  Score=123.51  Aligned_cols=228  Identities=13%  Similarity=0.078  Sum_probs=173.9

Q ss_pred             CCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhc
Q 047139          146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG  225 (611)
Q Consensus       146 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  225 (611)
                      -...|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+++.+|.+ . .++.......+|+.+.+..+ +.......|..
T Consensus       150 ~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~  224 (401)
T 4fdw_A          150 GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-T-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLK  224 (401)
T ss_dssp             CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-S-EECTTTTTTCCCSEEECCTT-CCEECTTTTTT
T ss_pred             CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-e-EechhhEeecccCEEEeCCc-hheehhhHhhC
Confidence            3445666 4699999986 67656677899999999999999884 3 35544444689999999844 77677777777


Q ss_pred             CcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc-----cCCCcC
Q 047139          226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN-----GKFPES  300 (611)
Q Consensus       226 l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~~~~  300 (611)
                      +.      +|+.+++..+ ++..-..+|.+ .+|+.+.+. +.++..-+..|.++++|+.+++.++.+.     ...+..
T Consensus       225 ~~------~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          225 TS------QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             CT------TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             CC------CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            76      9999999875 55455566666 789999995 4466556778999999999999988765     345567


Q ss_pred             CCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCC
Q 047139          301 FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ  380 (611)
Q Consensus       301 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  380 (611)
                      |.++++|+.+.+.++ +.. ++...|.+|++|+.+.+..    .+..-....+..+ +|+.+.+.++.........|.++
T Consensus       296 F~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~----~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          296 LEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQLTIPA----NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCEEEECT----TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             hhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccEEEECc----cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            899999999999954 543 5666899999999999976    3444444556667 99999999998777667777777


Q ss_pred             C-CCCEEEccCcccc
Q 047139          381 T-ELTTLVLNSASIS  394 (611)
Q Consensus       381 ~-~L~~L~l~~n~l~  394 (611)
                      + +++.|.+..+.+.
T Consensus       369 ~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          369 PDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTCCEEEECGGGHH
T ss_pred             CCCccEEEeCHHHHH
Confidence            4 7889998877643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=9.2e-12  Score=112.31  Aligned_cols=62  Identities=31%  Similarity=0.308  Sum_probs=28.1

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS  216 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~  216 (611)
                      ++|++|++++|++++..|..|.++++|++|++++|+ +++..+..+.++++|++|++++|+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccC
Confidence            445555555555554444445555555555555554 23222223334444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.32  E-value=5.7e-11  Score=122.79  Aligned_cols=102  Identities=10%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      .|..+.+|+.+.+.++ +..++...|.+        +++|+.+++.++ ++.....+|.+|++|+.+++..+ ++ .|+.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~  359 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFES--------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGA  359 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECT
T ss_pred             cccccccccccccccc-cceechhhhcC--------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehH
Confidence            4566777777777543 44444444443        777777777644 55444567788888888888766 55 5666


Q ss_pred             HHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139          554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL  589 (611)
Q Consensus       554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  589 (611)
                      ..+.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus       360 ~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            56666788888887654 22 334567777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.31  E-value=1.5e-10  Score=119.55  Aligned_cols=82  Identities=10%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139          471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN  550 (611)
Q Consensus       471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  550 (611)
                      -..+|.+|++|+.+++..+ ++.++...|.+        +++|+.+++..+ ++.....+|.+|++|+.+++..+ ++ .
T Consensus       312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~--------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~  379 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRG--------CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-Q  379 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-G
T ss_pred             chhhhcCCCCCCEEEeCCc-ccEEhHHhccC--------CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-E
Confidence            3455677777777777543 55555444444        777888877766 55445567788888888877654 22 2


Q ss_pred             ChhHHhhcCCCCcEE
Q 047139          551 IPAWIGESMPSLSIL  565 (611)
Q Consensus       551 ip~~l~~~l~~L~~L  565 (611)
                      +... +.++++|+.+
T Consensus       380 ~~~~-F~~c~~L~~I  393 (394)
T 4fs7_A          380 YRYD-FEDTTKFKWI  393 (394)
T ss_dssp             GGGG-BCTTCEEEEE
T ss_pred             hhhe-ecCCCCCcEE
Confidence            3333 2336666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.6e-11  Score=111.04  Aligned_cols=36  Identities=31%  Similarity=0.307  Sum_probs=17.4

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS  189 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  189 (611)
                      ++|++|++++|++++..|..|+++++|++|+|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   68 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK   68 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC
Confidence            444555555555544444444444444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=1.7e-12  Score=132.53  Aligned_cols=136  Identities=20%  Similarity=0.252  Sum_probs=78.4

Q ss_pred             CcccCCCCeeecccccch-----hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139          458 RDLDISFNSINGSIPQSV-----GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP  528 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p  528 (611)
                      ++|+|++|.++......+     ...++|++|+|++|.+++.+.    ..++..+..+++|++|+|++|.+++.    ++
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV----AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH----HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH----HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            334446666554333333     235677888887777653211    12344455677788888888887643    34


Q ss_pred             ccccCCCCCCEEECCCCcCcccChhHHhh---cCCCCcEEECcCCcCcccCCccccCC---C--CCCEee--ccCCcCc
Q 047139          529 PSLKNCSLMDSLDLGENQLSGNIPAWIGE---SMPSLSILRLRSNHFNGTIPSELCKL---S--ALHILD--LSHNNLL  597 (611)
Q Consensus       529 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~---~l~~L~~L~ls~n~l~~~~p~~l~~l---~--~L~~L~--ls~n~l~  597 (611)
                      ..+...++|+.|+|++|.|++.....+..   ..++|++|+|++|+|+......+..+   .  .|+.+.  +..|.++
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            56667778888888888887543332221   25788888888888876544444332   1  166666  6666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=6.5e-13  Score=135.63  Aligned_cols=169  Identities=13%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcc
Q 047139          381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDL  460 (611)
Q Consensus       381 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L  460 (611)
                      ++|++|++++|.+++.....+....++|+.|++++|.++......+...               +......     |++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~---------------L~~~~~~-----L~~L  160 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL---------------LLHDQCQ-----ITTL  160 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH---------------HHSTTCC-----CCEE
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH---------------HHhcCCc-----ccee
Confidence            5677777777776655444444444566777777776654322222100               0000112     2444


Q ss_pred             cCCCCeeec----ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cccccc
Q 047139          461 DISFNSING----SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLK  532 (611)
Q Consensus       461 ~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~  532 (611)
                      +|++|.++.    .++..+..+++|++|+|++|.+++.+..    .++..+...++|++|+|++|.+++.    ++..+.
T Consensus       161 ~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~----~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~  236 (372)
T 3un9_A          161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE----LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR  236 (372)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH----HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred             eCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH----HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence            557777654    2445557788999999999987642211    3345566678999999999999853    445566


Q ss_pred             CCCCCCEEECCCCcCcccChhHHhhcCC--C---CcEEE--CcCCcCcc
Q 047139          533 NCSLMDSLDLGENQLSGNIPAWIGESMP--S---LSILR--LRSNHFNG  574 (611)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~ip~~l~~~l~--~---L~~L~--ls~n~l~~  574 (611)
                      .+++|++|+|++|.|++.....+.. +.  .   |+.+.  +..|.+..
T Consensus       237 ~~~~L~~L~Ls~N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          237 EHPSLELLHLYFNELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HCSSCCEEECTTSSCCHHHHHHHHH-CC------CEEECCCC----CHH
T ss_pred             hCCCCCEEeccCCCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCccCH
Confidence            7899999999999998766666654 31  2   77777  77776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=8.2e-11  Score=119.39  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=74.6

Q ss_pred             ccCCCC-eeecccccchhccCCCCeEECcC-CCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          460 LDISFN-SINGSIPQSVGNLKQLLTLVISN-NNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       460 L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~-n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      ++.+++ .++ .+|. +..+++|++|+|++ |.++        +..|..++.+++|+.|+|++|+|++..|..|.++++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ--------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC--------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC--------CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence            445776 676 4677 78888888888875 6654        2333556668888888888888887777778888888


Q ss_pred             CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc
Q 047139          538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT  575 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~  575 (611)
                      +.|+|++|+|+ .+|..++..++ |+.|++++|++...
T Consensus        83 ~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           83 SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence            88888888887 45655554344 88888888887743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=5.7e-08  Score=100.14  Aligned_cols=111  Identities=11%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139          471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN  550 (611)
Q Consensus       471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  550 (611)
                      ...+|.++++|+.+.+. +.++.+....|.+        +.+|+.++|..+ ++.....+|.+|.+|+.+.+..+ ++ .
T Consensus       280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~  347 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFS-SRITELPESVFAG--------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K  347 (394)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCCEECTTTTTT--------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B
T ss_pred             cCcccccccccccccCC-CcccccCceeecC--------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E
Confidence            34556777788888775 3455455444444        778888888754 44344567888888888888654 55 5


Q ss_pred             ChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcC
Q 047139          551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL  596 (611)
Q Consensus       551 ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  596 (611)
                      |....+.++++|+.+++.++....   ..+.....|+.+.+..+.+
T Consensus       348 I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          348 IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            666666668888888888775442   3455667777777766644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=7.9e-10  Score=112.10  Aligned_cols=73  Identities=23%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             CCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc
Q 047139          146 LPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS  220 (611)
Q Consensus       146 ~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  220 (611)
                      +|. +..+++|++|+|++ |.+++..|..|+++++|++|+|++|+ +.+..|..|.++++|++|+|++|++++..+
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            454 55555566666654 55555444555555555555555555 444444445555555555555555544333

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=2.4e-10  Score=115.55  Aligned_cols=192  Identities=14%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcc
Q 047139          114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEG  193 (611)
Q Consensus       114 ~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~  193 (611)
                      .++..+++|+.|.+........+++... .+.++..+..+++|+.|++++|.-. .++. + .+++|++|++..+. +..
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~  207 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPD  207 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCB-CCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred             HhhhhcchhhheeecCcchhhccccccc-ccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CCh
Confidence            3455677787777765433221111110 1123344555666666666655211 1222 2 25566666665555 222


Q ss_pred             cccccCC--CCCCCCEEEcccc--cCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc--CCCCCCcEEEccC
Q 047139          194 QLSRNLG--TLCNLQTLKLSLN--QFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL--GYLKNLRYLELWY  266 (611)
Q Consensus       194 ~~~~~l~--~l~~L~~L~l~~n--~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~  266 (611)
                      .....+.  .+++|++|+|+.+  ...+. ....+.                          ..+  ..+++|++|++.+
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--------------------------~~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--------------------------PLFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--------------------------GGSCTTTCTTCCEEEEES
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--------------------------HHHhcCCCCCcCEEeCCC
Confidence            2222222  4555555555321  11100 000010                          111  2356677777766


Q ss_pred             CcccccCCCCc---cCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCCccccccChhhhcC-CCCCCEEEcC
Q 047139          267 NSFLGSIPPSL---GNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDNQWEGFITDAHLRN-LTSLEELSLI  338 (611)
Q Consensus       267 n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~l~  338 (611)
                      |.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++..... .+.. +  ...++++
T Consensus       262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~  338 (362)
T 2ra8_A          262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVS  338 (362)
T ss_dssp             CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECC
T ss_pred             CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEec
Confidence            66553322222   2456777777777776653    233334567777777777766543222 2222 2  3456666


Q ss_pred             c
Q 047139          339 K  339 (611)
Q Consensus       339 ~  339 (611)
                      .
T Consensus       339 ~  339 (362)
T 2ra8_A          339 D  339 (362)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.87  E-value=2.3e-07  Score=95.51  Aligned_cols=89  Identities=10%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      ....+|.+|++|+.+++..+ ++.++...|.|        +.+|+.+.+..+ ++.....+|.+|++|+.+++.++....
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~--------C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~  371 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAG--------CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW  371 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT--------CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHhHhhC--------CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence            34456788888999888754 55556555655        888999998755 554556788999999999998876431


Q ss_pred             cChhHHhhcCCCCcEEECcCCcC
Q 047139          550 NIPAWIGESMPSLSILRLRSNHF  572 (611)
Q Consensus       550 ~ip~~l~~~l~~L~~L~ls~n~l  572 (611)
                         ..++ .+..|+.+.+..+.+
T Consensus       372 ---~~~~-~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          372 ---NAIS-TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ---HTCB-CCCCC----------
T ss_pred             ---hhhh-ccCCCCEEEeCCCCE
Confidence               2333 377888888776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=9.9e-09  Score=103.73  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhh--cCCCCCCEEEcCccCCCCceee-----c
Q 047139          277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHL--RNLTSLEELSLIKTSNSSLSFN-----I  349 (611)
Q Consensus       277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~-----~  349 (611)
                      +..+++|+.|++++|.-. .++. + .+++|++|++..+.+...... .+  ..+++|+.|+|+.+.+ ...+.     +
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~-~~~~~~~~~~l  242 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVE-DYGFDGDMNVF  242 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCG-GGTCCSCGGGT
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEecccc-ccccchhHHHH
Confidence            445566777777665211 2222 2 256777777776665443222 22  2577777777653211 00000     0


Q ss_pred             --cCCCCCCcceeEEEecccccCcccchhcc---CCCCCCEEEccCcccccccchhHHh---cCCCCCEEEccCcccccc
Q 047139          350 --SFDWIPPFKLRYLVIRYYQLGPKFPTWLR---NQTELTTLVLNSASISDTLPSWFLQ---LNLTLDELDVGGNHLSGR  421 (611)
Q Consensus       350 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~ls~n~l~~~  421 (611)
                        ......+++|+.|++.+|.+....+..+.   .+++|++|+++.|.+.+..+..+..   .+++|+.|++++|.++..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence              00112345677777766666543333222   4567777777777776644333321   235677777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.57  E-value=1.2e-05  Score=82.00  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139          471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN  550 (611)
Q Consensus       471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  550 (611)
                      -..+|.++.+|+.+.+..+ +..++...|.+        +++|+.+++.++.++.....+|.+|.+|+.++|..+ ++ .
T Consensus       255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~--------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~  323 (379)
T 4h09_A          255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSG--------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-T  323 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCC-CSEECTTTTTT--------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-E
T ss_pred             Cccccceeehhcccccccc-ceecccccccc--------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-E
Confidence            3445666667777766432 33333333333        677777777777666455566777777777777654 44 4


Q ss_pred             ChhHHhhcCCCCcEEECcCCcCcccCCccccCC
Q 047139          551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKL  583 (611)
Q Consensus       551 ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l  583 (611)
                      |....+.++++|+.+.+..+ ++..-...|.++
T Consensus       324 I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          324 IQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             EHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            55555555777777776543 443334445444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.54  E-value=6.5e-06  Score=84.15  Aligned_cols=113  Identities=11%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      ....+|.++..|+.+.+..+ ++.+....|.+        +.+|+.+.+..+ +.......|.+|++|+.+.+.++.++ 
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~--------~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-  299 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN--------CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-  299 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTT--------CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccce--------eehhcccccccc-ceeccccccccccccccccccccccc-
Confidence            44556788899999988764 55444444444        889999999765 55455568999999999999999888 


Q ss_pred             cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCC
Q 047139          550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN  594 (611)
Q Consensus       550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n  594 (611)
                      .|+...+.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus       300 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          300 TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            677777777999999999765 66455668889999999988654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=1e-08  Score=93.43  Aligned_cols=123  Identities=20%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             cccchhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCC
Q 047139          471 IPQSVGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGEN  545 (611)
Q Consensus       471 ~~~~l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N  545 (611)
                      +...+...+.|++|+|++| .+.+-+..    .+...+...++|++|+|++|.+...    +...+...++|++|+|++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~----~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLK----ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHH----HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHH----HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3445566777888888877 66531111    2334455567788888888887643    3445566677888888888


Q ss_pred             cCcccChhHHhh---cCCCCcEEEC--cCCcCccc----CCccccCCCCCCEeeccCCcCc
Q 047139          546 QLSGNIPAWIGE---SMPSLSILRL--RSNHFNGT----IPSELCKLSALHILDLSHNNLL  597 (611)
Q Consensus       546 ~l~~~ip~~l~~---~l~~L~~L~l--s~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~  597 (611)
                      .|++.....+..   ..++|++|++  ++|.+...    +.+.+...++|++|++++|.+.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            887543332322   2567888888  77887754    3344555577888888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=3.3e-08  Score=94.72  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             cCCCCEEECcCCcccc--cCcccccCCCCCCEEECCCCcCcccChhHHhhcCC--CCcEEECcCCcCcccCC
Q 047139          510 LLTIRFLVLSNNHLSG--EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP--SLSILRLRSNHFNGTIP  577 (611)
Q Consensus       510 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~--~L~~L~ls~n~l~~~~p  577 (611)
                      +++|++|+|++|++++  .+|..+..+++|+.|+|++|+|++.  ..+.. +.  +|++|++++|++.+.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCccccC
Confidence            4445555555555544  2333444455555555555555432  11111 22  45555555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=1.8e-07  Score=89.63  Aligned_cols=99  Identities=26%  Similarity=0.372  Sum_probs=73.3

Q ss_pred             ccCCCCee---ecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCC-
Q 047139          460 LDISFNSI---NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCS-  535 (611)
Q Consensus       460 L~Ls~n~l---~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-  535 (611)
                      ++++.|..   .+.++....++++|+.|+|++|+|+.+.      .+|..+..+++|+.|+|++|++++.  ..+..+. 
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~  219 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG  219 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence            45577743   3233333367899999999999987554      4666777899999999999999965  3344444 


Q ss_pred             -CCCEEECCCCcCcccChh------HHhhcCCCCcEEE
Q 047139          536 -LMDSLDLGENQLSGNIPA------WIGESMPSLSILR  566 (611)
Q Consensus       536 -~L~~L~Ls~N~l~~~ip~------~l~~~l~~L~~L~  566 (611)
                       +|++|+|++|.+.+.+|.      .+...+|+|+.||
T Consensus       220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence             999999999999987762      2344589999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=5.2e-08  Score=88.77  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             CcccCCCC-eeecc----cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139          458 RDLDISFN-SINGS----IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP  528 (611)
Q Consensus       458 ~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p  528 (611)
                      ++|+|++| .+...    +...+...++|++|+|++|+|.+-+..    .+.+.+...++|++|+|++|.+.+.    +.
T Consensus        39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~----~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF----ALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH----HHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH----HHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            44444776 66532    344556678899999999987642211    2344455578899999999999864    46


Q ss_pred             ccccCCCCCCEEEC--CCCcCcccChhHHhh---cCCCCcEEECcCCcCc
Q 047139          529 PSLKNCSLMDSLDL--GENQLSGNIPAWIGE---SMPSLSILRLRSNHFN  573 (611)
Q Consensus       529 ~~l~~l~~L~~L~L--s~N~l~~~ip~~l~~---~l~~L~~L~ls~n~l~  573 (611)
                      ..+...++|++|+|  ++|.|++.....+..   ..++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            67888899999999  889998654333332   2689999999999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=4.8e-07  Score=80.32  Aligned_cols=83  Identities=10%  Similarity=0.095  Sum_probs=39.0

Q ss_pred             CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccccCcccccCC----CCCCEEECCCCc-CcccChh
Q 047139          480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSGEIPPSLKNC----SLMDSLDLGENQ-LSGNIPA  553 (611)
Q Consensus       480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~ip~  553 (611)
                      +|+.||+++|.+++.+-..        +..+++|++|+|++|. +++..-..+..+    ++|+.|+|++|. +|+..-.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~--------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDH--------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGG--------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCCccHHHHHH--------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4555666555544322211        2235555555555553 444333333332    245555555552 5544444


Q ss_pred             HHhhcCCCCcEEECcCCc
Q 047139          554 WIGESMPSLSILRLRSNH  571 (611)
Q Consensus       554 ~l~~~l~~L~~L~ls~n~  571 (611)
                      .+.. +++|++|++++|+
T Consensus       134 ~L~~-~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHH-FRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGG-CTTCCEEEEESCT
T ss_pred             HHhc-CCCCCEEECCCCC
Confidence            4443 5555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=4e-06  Score=74.40  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=16.1

Q ss_pred             CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139          155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS  189 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  189 (611)
                      +|++||+++|.++..--..+.++++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            44555555554443322334444455555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=2.5e-05  Score=70.58  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=70.1

Q ss_pred             hhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCCcCcc
Q 047139          475 VGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       475 l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      +.+-+.|++|+|++| +|.+-+..    .+-+.+..-+.|+.|+|++|++.+.    +.+.+..-+.|++|+|++|.|++
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~----~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIR----SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHH----HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHH----HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            344566777777764 55421110    2333444566777888888877643    34455566778888888888776


Q ss_pred             cChhHHhhc---CCCCcEEECcCC---cCcc----cCCccccCCCCCCEeeccCCcC
Q 047139          550 NIPAWIGES---MPSLSILRLRSN---HFNG----TIPSELCKLSALHILDLSHNNL  596 (611)
Q Consensus       550 ~ip~~l~~~---l~~L~~L~ls~n---~l~~----~~p~~l~~l~~L~~L~ls~n~l  596 (611)
                      ..-..+.+.   -+.|++|+|++|   .+..    .+-+.+..-+.|..|+++.|..
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            554444432   356788888765   3332    1334455557777888776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.23  E-value=0.0001  Score=66.56  Aligned_cols=111  Identities=18%  Similarity=0.210  Sum_probs=75.9

Q ss_pred             CcccCCCC-eeec----ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139          458 RDLDISFN-SING----SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP  528 (611)
Q Consensus       458 ~~L~Ls~n-~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p  528 (611)
                      ++|+|++| .+..    .+.+.+..-+.|+.|+|++|+|.|-...    .+.+.+..-+.|++|+|++|.|.+.    +.
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~----alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR----GLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT----THHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH----HHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            44455664 5543    2445566678899999999988754322    3344555678999999999999853    44


Q ss_pred             ccccCCCCCCEEECCCC---cCccc----ChhHHhhcCCCCcEEECcCCcCc
Q 047139          529 PSLKNCSLMDSLDLGEN---QLSGN----IPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       529 ~~l~~l~~L~~L~Ls~N---~l~~~----ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      +.+..-+.|++|+|++|   .+...    +-..+.. -+.|+.|+++.|.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCcc
Confidence            56777788999999876   34432    2233333 689999999988654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.86  E-value=0.0016  Score=54.84  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CCCEEECcCCcccccCcccccCCCCCCEEECCCCcC
Q 047139          512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL  547 (611)
Q Consensus       512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  547 (611)
                      +|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            466666666666644445566666666666666644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.50  E-value=0.0028  Score=53.28  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             CEEECcCCccc-ccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139          514 RFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG  574 (611)
Q Consensus       514 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~  574 (611)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+ .+|...+..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeec
Confidence            47899999987 46675543  46999999999999 7888777779999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	611
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.7 bits (213), Expect = 3e-19
 Identities = 73/311 (23%), Positives = 119/311 (38%), Gaps = 42/311 (13%)

Query: 39  CKEVEREALLQFKQNLTDPSGRLSSWV-GEDCC--SWRGVGCNNRTGS--IIMLNLNN-- 91
           C   +++ALLQ K++L +P+  LSSW+   DCC  +W GV C+  T +  +  L+L+   
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 92  -----PFRDSFDSYEDDAVHELRG------KISPSLLQLKDLEYLDLSLNNFKV------ 134
                P   S  +        + G       I P++ +L  L YL ++  N         
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 135 --------LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLS 186
                   LD S N  + TLP  + ++ NL+ +    N + G IPD + S + L      
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 187 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
             + L G++      L                   F    +                   
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL--------AKNSL 233

Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
                 +G  KNL  L+L  N   G++P  L  L FL  L ++ N + G+ P+  G L  
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 307 IRVLELSDNQW 317
             V   ++N+ 
Sbjct: 293 FDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 55/277 (19%), Positives = 93/277 (33%), Gaps = 17/277 (6%)

Query: 278 GNLTFLEELYLTSNQMNGKF--PESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL 335
                +  L L+   +   +  P S   L  +  L +             +  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 336 SLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD 395
            +   +++++S  I         L  L   Y  L    P  + +   L  +  +   IS 
Sbjct: 107 YI---THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 396 TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKL 455
            +P  +   +     + +  N L+G+IP T        VDLS N  EG   +   +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 456 YLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF 515
               L  +  + +                +  N N  D+ NN   G +P+ +  L  +  
Sbjct: 224 QKIHLAKNSLAFDLGKVG-----------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 552
           L +S N+L GEI P   N    D      N+     P
Sbjct: 273 LNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           N   LDL NN    TLP  L  +  L SL++S N+L G+IP    +L    +   + N  
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

Query: 191 LEG 193
           L G
Sbjct: 304 LCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 69/342 (20%), Positives = 104/342 (30%), Gaps = 51/342 (14%)

Query: 115 SLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWL-------FNITNLLSLDLSSNDLQ 167
           +LLQ+K        L N   L       +     WL            + +LDLS  +L 
Sbjct: 10  ALLQIKK------DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 168 GD--IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG 225
               IP   ++L  L  L + G + L G +   +  L  L  L ++              
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV------SGAI 117

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
                   +L  L+  YN L+G LP S+  L NL  +    N   G+IP S G+ + L  
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
               S                +  ++LS N                              
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNML---------------------------- 209

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
               +       K    +             +     L  L L +  I  TLP    QL 
Sbjct: 210 -EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPL 447
             L  L+V  N+L G IP     +       ++N+     PL
Sbjct: 269 -FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 54/281 (19%), Positives = 89/281 (31%), Gaps = 16/281 (5%)

Query: 302 GQLSAIRVLELSDNQWEGFIT-DAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR 360
            Q   +  L+LS           + L NL  L  L +     ++L   I        +L 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAKLTQLH 104

Query: 361 YLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG 420
           YL I +  +    P +L     L TL  +  ++S TLP     L   +      GN +SG
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISG 163

Query: 421 RIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQ 480
            IP++                       S N     +     + N     + +++     
Sbjct: 164 AIPDSYGSFSK----------LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 540
            +      N        N        +G    +  L L NN + G +P  L     + SL
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC 581
           ++  N L G IP     ++    +    +N      P   C
Sbjct: 274 NVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
                  +L+ L LR+N   GT+P  L +L  LH L++S NNL G IP
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 67/384 (17%), Positives = 136/384 (35%), Gaps = 40/384 (10%)

Query: 231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTS 290
             +   +  LG   +T    +S   L  +  L+      + SI   +  L  L ++  ++
Sbjct: 20  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSN 75

Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
           NQ+    P     L+ +  + +++NQ       A+L NLT L   +   T    L    +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 351 FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN----- 405
            + +         I                       L + +  + L     +++     
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 406 ---LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDI 462
                L+ L    N +S   P  ++      + L+ N+ +    L S       L DLD+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLD-ELSLNGNQLKDIGTLASLT----NLTDLDL 248

Query: 463 SFNSINGSIPQSVGNLKQLLTLVISNNNLSD------------MTNNNFSGEIPESIGSL 510
           + N I+   P  +  L +L  L +  N +S+            +  N    E    I +L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
             + +L L  N++S   P  + + + +  L    N++S    + +  ++ +++ L    N
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA-NLTNINWLSAGHN 361

Query: 571 HFNGTIPSELCKLSALHILDLSHN 594
             +   P  L  L+ +  L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 128 SLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSG 187
            L N + L  +NN  +   P     +TNL  L L+ N L+       +SL +L  LDL+ 
Sbjct: 195 KLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 188 NSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG 247
           N          L  L  L  LKL  NQ        I  +S     ++L  LEL  NQL  
Sbjct: 251 NQISN---LAPLSGLTKLTELKLGANQ--------ISNISPLAGLTALTNLELNENQLED 299

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI 307
             PIS   LKNL YL L++N+     P  + +LT L+ L+  +N+++     S   L+ I
Sbjct: 300 ISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 308 RVLELSDNQWEGFITDAHLRNLTSLEELSL 337
             L    NQ         L NLT + +L L
Sbjct: 354 NWLSAGHNQISDLT---PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 79/420 (18%), Positives = 134/420 (31%), Gaps = 54/420 (12%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D +L       L       T+     ++  + +L      ++    DG   LN+L  ++ 
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 73

Query: 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQL 245
           S N   +      L  L  L  + ++ NQ +             +   +    ++   + 
Sbjct: 74  SNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 246 TGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLS 305
             NL         +  +                                    +    L+
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLS---------------FGNQVTDLKPLANLT 175

Query: 306 AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIR 365
            +  L++S N+       A L NL SL          ++   +          L  L + 
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESL--------IATNNQISDITPLGILTNLDELSLN 227

Query: 366 YYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT 425
             QL  K    L + T LT L L +  IS+  P   L     L EL +G N +S   P  
Sbjct: 228 GNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGANQISNISPLA 282

Query: 426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLV 485
            +          +   +        NLT L L      FN+I+   P  V +L +L  L 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTL-----YFNNISDISP--VSSLTKLQRLF 335

Query: 486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 545
            +NN +SD            S+ +L  I +L   +N +S   P  L N + +  L L + 
Sbjct: 336 FANNKVSD----------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 29/178 (16%)

Query: 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
            +L  L +L  LDL+ N    L              L  +T L  L L +N +    P  
Sbjct: 235 GTLASLTNLTDLDLANNQISNL------------APLSGLTKLTELKLGANQISNISP-- 280

Query: 174 FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233
              L  L  L     +  + +    +  L NL  L L  N  S         +S   + +
Sbjct: 281 ---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--------DISPVSSLT 329

Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
            L RL    N+++     SL  L N+ +L   +N      P  L NLT + +L L   
Sbjct: 330 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 56/313 (17%), Positives = 106/313 (33%), Gaps = 39/313 (12%)

Query: 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
               A L+L  N++T         LKNL  L L  N      P +   L  LE LYL+ N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF 351
           Q+     +       ++ L + +N+                                  F
Sbjct: 90  QLKELPEKMPKT---LQELRVHENEITKVRKSV--------------------------F 120

Query: 352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDEL 411
           + +    +  L     +         +   +L+ + +   +I+         L     EL
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT----EL 176

Query: 412 DVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI 471
            + GN ++     +L         L  +          S     +LR+L ++ N +   +
Sbjct: 177 HLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 234

Query: 472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPS 530
           P  + + K +  + + NNN+S + +N+F    P       +   + L +N +   EI PS
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPS 292

Query: 531 LKNC-SLMDSLDL 542
              C  +  ++ L
Sbjct: 293 TFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 7e-12
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 40/290 (13%)

Query: 131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190
           +  +LDL NN           N+ NL +L L +N +    P  F+ L  L+ L LS N  
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 250
            E            LQ L++  N+ +       +GL++ I    +  L     + +G   
Sbjct: 92  KELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMI----VVELGTNPLKSSGIEN 143

Query: 251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
            +   +K L Y+ +   + + +IP  L     L EL+L  N++      S   L+ +  L
Sbjct: 144 GAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 311 ELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 370
            LS N        +                                  LR L +   +L 
Sbjct: 201 GLSFNSISAVDNGS----------------------------LANTPHLRELHLNNNKL- 231

Query: 371 PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG 420
            K P  L +   +  + L++ +IS    + F        +    G  L  
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 24/260 (9%)

Query: 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG 415
           P     L ++  ++        +N   L TL+L +  IS   P  F  L   L+ L +  
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSK 88

Query: 416 NHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSV 475
           N L        + +    + +  N          + L ++ + +L  +    +G    + 
Sbjct: 89  NQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 476 GNLKQLLTLVISNNNLS-------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNH 522
             +K+L  + I++ N++              +  N  +     S+  L  +  L LS N 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 523 LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG------TI 576
           +S     SL N   +  L L  N+L              + ++ L +N+ +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 577 PSELCKLSALHILDLSHNNL 596
           P    K ++   + L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 9e-09
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
            +DL +N+          NL  L    L +  N I+   P +   L +L  L +S N L 
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNL--HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 493 D-------------MTNNNFSGEIPESIGSLLTIRFLVLSNNHL--SGEIPPSLKNCSLM 537
           +             +  N  +         L  +  + L  N L  SG    + +    +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL 597
             + + +  ++  IP  +    PSL+ L L  N       + L  L+ L  L LS N++ 
Sbjct: 153 SYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 598 GPIPYCVGDFSAM 610
                 + +   +
Sbjct: 209 AVDNGSLANTPHL 221

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNL--------- 156
           +++      +   L  LE L LS N  K L          L      IT +         
Sbjct: 65  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 157 ----LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL 212
               + L  +     G     F  +  L  + ++  +      +   G   +L  L L  
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLPPSLTELHLDG 180

Query: 213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS 272
           N+ +   +  + GL+       LA+L L +N ++     SL    +LR L L  N+ L  
Sbjct: 181 NKITKVDAASLKGLNN------LAKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVK 233

Query: 273 IPPSLGNLTFLEELYLTSNQMNGKFPESF------GQLSAIRVLELSDNQWEGF-ITDAH 325
           +P  L +  +++ +YL +N ++      F       + ++   + L  N  + + I  + 
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

Query: 326 LRNLTSLEELSL 337
            R +     + L
Sbjct: 294 FRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 15/164 (9%)

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
            V  S    E        +   L L       N I         NLK L TL        
Sbjct: 14  VVQCSDLGLEKVPKDLPPDTALLDL-----QNNKITEIKDGDFKNLKNLHTL-------- 60

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 552
            + NN  S   P +   L+ +  L LS N L        K    +   +    ++  ++ 
Sbjct: 61  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 553 AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
             +  +   +  L       +G        +  L  + ++  N+
Sbjct: 121 NGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 29/245 (11%)

Query: 52  QNLTDPSGRLSSWVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGK 111
           + L     +L     +   + + +  +    + +  ++ N               +  G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP 171
            + +   +K L Y+ ++  N            +T+P  L    +L  L L  N +     
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-----------TTIPQGLP--PSLTELHLDGNKITKVDA 188

Query: 172 DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231
                LN+L  L LS N                       L +     +  +       +
Sbjct: 189 ASLKGLNNLAKLGLSFN--------SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 232 SSSLARLELGYNQLTG------NLPISLGYLKNLRYLELWYN--SFLGSIPPSLGNLTFL 283
              +  + L  N ++         P       +   + L+ N   +    P +   +   
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 284 EELYL 288
             + L
Sbjct: 301 AAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 502 EIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS 561
           ++P+ +        L L NN ++       KN   + +L L  N++S   P      +  
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVK 80

Query: 562 LSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603
           L  L L  N            L  L + +     +   +   
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 53/252 (21%), Positives = 82/252 (32%), Gaps = 11/252 (4%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189
              + + L  N  +           NL  L L SN L       F+ L  L+ LDLS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
            L          L  L TL L                      ++L  L L  N L    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL------FRGLAALQYLYLQDNALQALP 145

Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
             +   L NL +L L  N        +   L  L+ L L  N++    P +F  L  +  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369
           L L  N     +    L  L +L+ L L   +++    +     +  + L+       ++
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRL---NDNPWVCDCRARPLWAW-LQKFRGSSSEV 260

Query: 370 GPKFPTWLRNQT 381
               P  L  + 
Sbjct: 261 PCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 51/293 (17%), Positives = 85/293 (29%), Gaps = 41/293 (13%)

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
              + + L  N        S      L  L+L SN +      +F  L+ +  L+LSDN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 317 WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
               +  A    L  L  L L       L       +     L+YL ++   L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHL---DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
            R+   LT L L+   IS      F  L+ +LD L +  N ++   P+            
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
                   +P  +    +  L+ L ++ N                               
Sbjct: 208 LFANNLSALPTEALAPLR-ALQYLRLNDNPWVCDCR------------------------ 242

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549
                    +      ++    S++ +   +P  L    L     L  N L G
Sbjct: 243 ---------ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 11/191 (5%)

Query: 129 LNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188
           L     L L   G     P     +  L  L L  N LQ    D F  L +L  L L GN
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN 248
             +     R    L +L  L L  N+ +         L   +            N L+  
Sbjct: 164 R-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF------ANNLSAL 216

Query: 249 LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308
              +L  L+ L+YL L  N ++     +     +L++   +S+++    P+         
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRD--- 272

Query: 309 VLELSDNQWEG 319
           +  L+ N  +G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 48/292 (16%), Positives = 83/292 (28%), Gaps = 42/292 (14%)

Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 366
            + + L  N+       +  R   +L  L L     + +            +L       
Sbjct: 34  SQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL--SDN 90

Query: 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
            QL    P        L TL L+   + +  P  F +    L  L +  N L     +T 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTF 149

Query: 427 VFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVI 486
                                         L  L +  N I+    ++   L  L     
Sbjct: 150 RDLG-------------------------NLTHLFLHGNRISSVPERAFRGLHSL----- 179

Query: 487 SNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQ 546
              +   +  N  +   P +   L  +  L L  N+LS     +L     +  L L +N 
Sbjct: 180 ---DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLG 598
              +           L   R  S+    ++P     L+   +  L+ N+L G
Sbjct: 237 WVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 52/307 (16%), Positives = 83/307 (27%), Gaps = 38/307 (12%)

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216
           ++       LQ  +P G  +  + Q + L GN  +    + +     NL  L L  N  +
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA 69

Query: 217 GEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276
              +    GL+           +L         P +   L  L  L L         P  
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVD-----PATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336
              L  L+ LYL  N +     ++F  L  +  L L  N+       A  R L SL+   
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLD--- 180

Query: 337 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDT 396
                   L  N      P        +    L     + L                   
Sbjct: 181 -----RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT----------------- 218

Query: 397 LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLY 456
                L     L  L +  N          ++ +      SS+     +P   +      
Sbjct: 219 ---EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 457 LRDLDIS 463
           L   D+ 
Sbjct: 276 LAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 38/222 (17%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 381 TELTTLVLNSASISDTLPSWFLQL-NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSN 439
                + L+   IS    + F    NLT+  L             T +          + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 440 RFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNF 499
           +     P     L    L  L +    +    P     L  L            + +N  
Sbjct: 92  QLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAAL--------QYLYLQDNAL 141

Query: 500 SGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM 559
                ++   L  +  L L  N +S     + +    +D L L +N+++   P      +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDL 200

Query: 560 PSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
             L  L L +N+ +      L  L AL  L L+ N  +    
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 8e-11
 Identities = 38/197 (19%), Positives = 54/197 (27%), Gaps = 18/197 (9%)

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
           ++       + LP  L    +   L LS N L             L  L+L      + Q
Sbjct: 15  VNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARL--------------EL 240
           +   L  L  L      L                 ++ + L  L               L
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 241 GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPES 300
             N+L    P  L     L  L L  N+        L  L  L+ L L  N +    P+ 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 301 FGQLSAIRVLELSDNQW 317
           F     +    L  N W
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 28/222 (12%), Positives = 51/222 (22%), Gaps = 36/222 (16%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
           L ++PP L        L+L+ N +      +    + +  L L   +      D  L  L
Sbjct: 22  LTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
            +L+       S   L   +    +       L                   +   L   
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
              +    P                                      ++N          
Sbjct: 140 PPGLLTPTPKLEKLSL-------------------------------ANNNLTELPAGLL 168

Query: 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNL 491
           + L    L  L +  NS+  +IP+       L    +  N  
Sbjct: 169 NGLE--NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 32/214 (14%), Positives = 54/214 (25%), Gaps = 11/214 (5%)

Query: 228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELY 287
           E    +S   +      LT  LP  L   K+   L L  N        +L   T L +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 288 LTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSF 347
           L   ++     +          L +             L  L        +   + +   
Sbjct: 62  LDRAELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 348 NISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT 407
           ++    +        +          P  L   T     +  + +    LP+  L     
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 408 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRF 441
           LD L +  N L                 L  N +
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197
           +NN         L  + NL +L L  N L   IP GF   + L    L GN +L      
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN---- 210

Query: 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLE 239
                C +   +  L   +  V  +  G+     +S++A ++
Sbjct: 211 -----CEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQ 247

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 32/202 (15%), Positives = 55/202 (27%), Gaps = 44/202 (21%)

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
            V+          P    + T L+L     S N +      ++    +L  L +    L+
Sbjct: 14  EVNCDKRNLTALPPDLPKDTTILHL-----SENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 493 DMTNNN-------------------------------------FSGEIPESIGSLLTIRF 515
            +  +                                       +     ++  L  ++ 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575
           L L  N L    P  L     ++ L L  N L+      +   + +L  L L+ N    T
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-T 186

Query: 576 IPSELCKLSALHILDLSHNNLL 597
           IP        L    L  N  L
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 60/349 (17%), Positives = 100/349 (28%), Gaps = 32/349 (9%)

Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
           L +C++      LEL    L+ +LP       +L  L    NS L  +P    +L  L  
Sbjct: 32  LRDCLDRQ-AHELELNNLGLS-SLPELPP---HLESLVASCNS-LTELPELPQSLKSLLV 85

Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
                  ++   P       +   LE                +  SL++L  +  S   +
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 346 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLN 405
           +   +     P       +            L +       ++   +I + LP       
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 406 LTLDELDVGGNHLSGRIPNTLVFRF-----PGSVDLSSNRFEGPIPLWSSNLTKLYLRDL 460
           LT    D         +P +L            +              +       L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 461 DISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN 520
               N+ +  I         L  L +SNN L          E+P     L     L+ S 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI---------ELPALPPRL---ERLIASF 313

Query: 521 NHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 569
           NHL+ E+P   +N      L +  N L         +   S+  LR+ S
Sbjct: 314 NHLA-EVPELPQNLK---QLHVEYNPLRE-----FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 47/332 (14%), Positives = 94/332 (28%), Gaps = 18/332 (5%)

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316
           +    LEL     L S+P    +L   E L  + N +  + PE    L   + L + +N 
Sbjct: 38  RQAHELELNNLG-LSSLPELPPHL---ESLVASCNSLT-ELPELPQSL---KSLLVDNNN 89

Query: 317 WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW 376
            +       L     +    L K      S  +    +    L+ L      L       
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 377 LRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 436
            + +       L   +      +   +L      L+      +       +   P    +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 437 SSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496
            ++              +      +   +        +  ++ + +   +S    +    
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 556
           N  S EI        ++  L +SNN L  E+P        ++ L    N L+      + 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-----VP 320

Query: 557 ESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588
           E   +L  L +  N      P     +  L +
Sbjct: 321 ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 64  WVGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLE 123
            +         +    ++ + + ++ N     S        ++    +I         LE
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 124 YLDLSLNNF----------KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG 173
            L++S N            + L  S N   + +P       NL  L +  N L+   PD 
Sbjct: 288 ELNVSNNKLIELPALPPRLERLIASFNHL-AEVPELP---QNLKQLHVEYNPLRE-FPDI 342

Query: 174 FSSLNSLQL 182
             S+  L++
Sbjct: 343 PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 48/330 (14%), Positives = 99/330 (30%), Gaps = 18/330 (5%)

Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189
                L+L+N G  S+LP       +L SL  S N L  ++P+   SL SL + + +  +
Sbjct: 38  RQAHELELNNLGL-SSLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 190 F--LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG 247
              L   L     +   L+ L    N    ++ D  +   + +     +   +       
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 248 NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI 307
                L  L  L  +    NS        L   + +    +       +       + A 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYY 367
             L  +       +   ++R+    +   L ++          F  +             
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY--YLN 270

Query: 368 QLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV 427
               +  +       L  L +++  +   LP+   +L      L    NHL+  +P    
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE----RLIASFNHLA-EVPELP- 323

Query: 428 FRFPGSVDLSSNRFEGPIPLWSSNLTKLYL 457
            +    + +  N      P    ++  L +
Sbjct: 324 -QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 6e-07
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 139 NNGFNSTLPHWLFNITNLLSLDLSSNDLQGD----IPDGFSSLNSLQLLDLSGNSFLEGQ 194
           + G            + L  L L+  D+       +     + +SL+ LDLS N   +  
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 195 LSRNLGTL----CNLQTLKLSLNQFSGEVSDFIDGLSE 228
           + + + ++    C L+ L L    +S E+ D +  L +
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-06
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 176 SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSS 234
           SL+ +Q LD+      + + +  L  L   Q ++L     +     D    L       +
Sbjct: 1   SLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---PA 56

Query: 235 LARLELGYNQLTGNLPISLGYL-----KNLRYLELWYN 267
           LA L L  N+L       +          ++ L L   
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 477 NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL----- 531
               L  L +++ ++SD +       +  ++ +  ++R L LSNN L       L     
Sbjct: 367 PGSVLRVLWLADCDVSDSS----CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 532 KNCSLMDSLDLGENQLSGNIPAWIG---ESMPSLSIL 565
           +   L++ L L +   S  +   +    +  PSL ++
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 457 LRDLDISFNSINGS-IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF 515
           ++ LDI    ++ +   + +  L+Q   + + +  L++        +I  ++     +  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE----ARCKDISSALRVNPALAE 59

Query: 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM 559
           L L +N L       +       S  + +  L        G  +
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 131 NFKVLDLSNNGFNST-LPHWLFNITNLLSLDLSSNDLQGD----IPDGFSSLNSLQLLDL 185
           + + LD+     +       L  +     + L    L       I        +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 186 SGNSFLEG---QLSRNLGT-LCNLQTLKLSLNQF 215
             N   +     + + L T  C +Q L L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 232 SSSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSF----LGSIPPSLGNLTFLEEL 286
           S  +  L++   +L+       L  L+  + + L            I  +L     L EL
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 287 YLTSNQMNGKFPESFGQL-----SAIRVLELSDNQW 317
            L SN++         Q        I+ L L +   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG----TIPSELCKLSALHILDLS 592
           + SLD+   +LS    A +   +    ++RL            I S L    AL  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 593 HNNL 596
            N L
Sbjct: 64  SNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSL 536
           + +L I    LSD           E +  L   + + L +  L+      I  +L+    
Sbjct: 4   IQSLDIQCEELSD-------ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 537 MDSLDLGENQLSGNIPAWIGESM----PSLSILRLRSNHFN 573
           +  L+L  N+L       + + +      +  L L++    
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 512 TIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS----LS 563
            +R L L++  +S      +  +L     +  LDL  N L       + ES+      L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 564 ILRLRSNHFNGTIPSELCKL 583
            L L   +++  +   L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 174 FSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSEC 229
               + L++L L+     +     L+  L    +L+ L LS N      +   ++ + + 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ- 423

Query: 230 INSSSLARLELGYNQLTGNLPISLGYLK 257
                L +L L     +  +   L  L+
Sbjct: 424 -PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 531 LKNCSLMDSLDLGENQLSGNIPAWIGESM---PSLSILRLRSNHFNGTIPSELCK----- 582
            +  S++  L L +  +S +  + +  ++    SL  L L +N        +L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 583 LSALHILDLSHNNLLGPIP 601
              L  L L        + 
Sbjct: 425 GCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 231 NSSSLARLELGYNQLTGN----LPISLGYLKNLRYLELWYNSFLGSIPPSLG-----NLT 281
             S L  L L    ++ +    L  +L    +LR L+L  N    +    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 282 FLEELYLTSNQMNGKFPESFGQL 304
            LE+L L     + +  +    L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 511 LTIRFLVLSNNHLSG----EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE---SMPSLS 563
           L I+ L +    LS     E+ P L+ C     + L +  L+      I       P+L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQ---VVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 564 ILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603
            L LRSN         + +        +   +L       
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 41/242 (16%), Positives = 68/242 (28%), Gaps = 15/242 (6%)

Query: 181 QLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLEL 240
           Q LDL+G +       R    L +   +     +     S     L+E  +   +  ++L
Sbjct: 3   QTLDLTGKNLHPDVTGR----LLSQGVIAFRCPR-----SFMDQPLAEHFSPFRVQHMDL 53

Query: 241 GYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPE 299
             + +  + L   L     L+ L L        I  +L   + L  L L+      +F  
Sbjct: 54  SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 300 SFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK-----TSNSSLSFNISFDWI 354
                S  R+ EL+ +    F        +  + E            N   S   +    
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVG 414
            P  +   +     L             L  L L+            L    TL  L V 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 415 GN 416
           G 
Sbjct: 234 GI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 18/275 (6%)

Query: 158 SLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG 217
           +LDL+  +L  D+      L S  ++          Q      +   +Q + LS +    
Sbjct: 4   TLDLTGKNLHPDVT---GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 218 EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS- 276
                   LS+C     L  L L   +L+  +  +L    NL  L L   S         
Sbjct: 61  S--TLHGILSQCSK---LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 277 ----LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSL 332
                  L  L   +                   I  L LS  +     +D         
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 333 EELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY-YQLGPKFPTWLRNQTELTTLVLNSA 391
             + L  + +  L  +   ++     L++L +   Y + P+    L     L TL +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 392 SISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
               TL      L   L  L +  +H +     T+
Sbjct: 236 VPDGTLQL----LKEALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 6/233 (2%)

Query: 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194
           LDL+    +  +   L +   +++     + +   + + FS    +Q +DLS +      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS--ECINSSSLARLELGYNQLTGNLPIS 252
           L   L     LQ L L   + S  + + +   S    +N S  +       Q   +    
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
           L  L      +        ++      +T L       N           +   +  L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIR 365
           SD+             L  L+ LSL +  +      +    IP   L+ L + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP--TLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 12/128 (9%)

Query: 411 LDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING- 469
           LD+ G +L   +   L+ +   +     +  + P+     + +   ++ +D+S + I   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA---EHFSPFRVQHMDLSNSVIEVS 61

Query: 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP 529
           ++   +    +L  L +    LSD         I  ++     +  L LS      E   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSD--------PIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 530 SLKNCSLM 537
                S  
Sbjct: 114 QTLLSSCS 121

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 18/245 (7%)

Query: 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSND 165
                +          ++++DLS +  +          STL   L   + L +L L    
Sbjct: 32  RSFMDQPLAEHFSPFRVQHMDLSNSVIE---------VSTLHGILSQCSKLQNLSLEGLR 82

Query: 166 LQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLC-NLQTLKLSLNQFSGEVSDFID 224
           L   I +  +  ++L  L+LSG S       + L + C  L  L LS      E    + 
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN-SFLGSIPPSLGNLTFL 283
                   + L       N    +L   +    NL +L+L  +             L +L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 284 EELYLTS-NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL-TSLEELSLIKTS 341
           + L L+    +  +     G++  ++ L++        + D  L+ L  +L  L +  + 
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH 257

Query: 342 NSSLS 346
            ++++
Sbjct: 258 FTTIA 262

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 38/219 (17%), Positives = 71/219 (32%), Gaps = 16/219 (7%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D +L N   +    +    T+     ++  + +L      +     +G   LN+L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQL 245
             N   +    +NL  +  L+     L   S           +  ++       L     
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 246 TGNLPISLGYLKNLRYLELWYNSFLG-------SIPPSLGNLTFLEELYLTSNQMNGKFP 298
              L + L  + N+  L    N           S    L NL+ L  L    N+++    
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--I 188

Query: 299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
                L  +  + L +NQ         L N ++L  ++L
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTL 224

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 39/339 (11%), Positives = 83/339 (24%), Gaps = 35/339 (10%)

Query: 204 NLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGN----LPISLGYLKN 258
           +++   L L+  + E        L E     S+  + L  N +       L  ++   K+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLED---DSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
           L   E                L  L +  L   +++             +   +      
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 319 GFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR 378
             +   +L N     +                     P     +  R          W +
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 379 NQTELTTLVLNSASISDT------------LPSWFLQLNLTLDELDVGGNHLSGRIPNTL 426
                  L       +              L        L L +        S       
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 427 VFRFPGSVDLSSNRFEG----PIPLWSSNLTKLYLRDLDISFNSINGSIPQSV-----GN 477
            +     + L+           +    S L  + L+ L + +N I     +++       
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFL 516
           +  LL L ++ N  S+        ++ + I  + + R  
Sbjct: 301 MPDLLFLELNGNRFSE------EDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 33/313 (10%), Positives = 77/313 (24%), Gaps = 26/313 (8%)

Query: 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLEL 312
           K+L+   +       S+   L     ++E+ L+ N +  +      E+      + + E 
Sbjct: 8   KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK 372
           SD        +           L         L      D       +  +I +      
Sbjct: 67  SDIFTGRVKDEIPEAL----RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 373 FPTWL--RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRF 430
                   N          + ++ +   +   +    L  +  G N L           F
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 431 PGSVDLSSNRFEGPIPLWSSNLTK----LYLRDLDISFNSINGSIPQSVGNLKQLLTLVI 486
                L + +                  L         +  + +      +   +     
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 487 SNNNLSDMTNNNFSGEIPESIGSLL------TIRFLVLSNNHLSGEIPPSL-----KNCS 535
            N     + +   S     ++           ++ L L  N +  +   +L     +   
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 536 LMDSLDLGENQLS 548
            +  L+L  N+ S
Sbjct: 303 DLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 45/342 (13%), Positives = 98/342 (28%), Gaps = 35/342 (10%)

Query: 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSLN 213
           L LD  + + +  +       +S++ + LSGN+        LS N+ +  +L+  + S  
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 214 Q---FSGEVSDFIDGLSE-CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269
                  E+ + +  L +  +    L  + L  N         L    +           
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ--WEGFITDAHLR 327
              + P  G         L  N+     P     +     LE    +   + F +   L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 328 NLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLV 387
            +  ++     +     L   +++               +         L++   L  L 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 388 LNSASISDTLPSWFLQL-----NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE 442
           LN   +S    +  +       N+ L  L +  N +      TL                
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--------------- 294

Query: 443 GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL 484
               +    +    L  L+++ N         V  ++++ + 
Sbjct: 295 ---TVIDEKMPD--LLFLELNGNRF-SEEDDVVDEIREVFST 330

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 25/108 (23%)

Query: 133 KVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQL---------- 182
           +VL L++     T+   L  +  +  LDLS N L+   P   ++L  L++          
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 183 ------------LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE 218
                       L L  N   +    + L +   L  L L  N    E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 13/117 (11%)

Query: 458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLV 517
           R L ++   +  ++   +  L  +  L +S+N L  +         P ++ +L      V
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL---------PPALAAL--RCLEV 47

Query: 518 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574
           L  +  + E    + N   +  L L  N+L  +       S P L +L L+ N    
Sbjct: 48  LQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 552
            + + + +  +   +  LL +  L LS+N L    P      + +  L++ +   +    
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALEN 57

Query: 553 AWIGESMPSLSILRLRSNHFNGT-IPSELCKLSALHILDLSHNNLLGPIPY 602
                ++P L  L L +N    +     L     L +L+L  N+L      
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 29/182 (15%)

Query: 433 SVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNN-- 490
           +VD +    +        + T+L L     + N +       +      L  +    N  
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLL-----NDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 491 ---------------LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNC- 534
                             +  N       +    L  ++ L L +N +S  +P S ++  
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 535 SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 594
           SL                AW  E +   S   L         PS++     + I DL H+
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKS---LNGGAARCGAPSKV---RDVQIKDLPHS 180

Query: 595 NL 596
             
Sbjct: 181 EF 182

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 139 NNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL 191
           +N     LP+ +F   +  + LD+S   +      G  +L  L+         L
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 8/224 (3%)

Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
           +  IP  L       EL     ++      +F     +  +E+S N     I      NL
Sbjct: 20  VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 77

Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
             L E+ + K +N       +F  +P  +   +     +        + +  ++   + +
Sbjct: 78  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 136

Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS 449
           + +I     + F+ L+     L +  N +               ++LS N     +P   
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196

Query: 450 -SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS 492
               +      LDIS   I+      + NLK+L     S  NL 
Sbjct: 197 FHGASGP--VILDISRTRIHSLPSYGLENLKKLRAR--STYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 16/194 (8%)

Query: 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 211
                +  +L    +   +    + LNS+  +  + +     +  + +  L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 212 LNQFSGEV------SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265
            N+ +         +     L E       +  +L   +        +  +  L +L   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPE--SFGQLSAIRVLELSDNQWEGFITD 323
            + +LG+   +   +        T +  + +  +      L+ ++ L LS N        
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--- 193

Query: 324 AHLRNLTSLEELSL 337
             L  L +L+ L L
Sbjct: 194 RALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 15/196 (7%)

Query: 126 DLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185
           D +       +L        +      + ++  +  +++D++     G   L ++  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFL 75

Query: 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQL 245
           +GN   + +   NL  L  L   +  +   S              ++       L +   
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 246 TGNLPISLGYLKNLRY--------LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKF 297
             +L +    + ++               ++ +  I P L  LT L+ LYL+ N ++   
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-- 192

Query: 298 PESFGQLSAIRVLELS 313
             +   L  + VLEL 
Sbjct: 193 LRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	611
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.1e-40  Score=327.80  Aligned_cols=268  Identities=28%  Similarity=0.463  Sum_probs=200.0

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEeCCCCCCCCCCccccccccccee--
Q 047139           38 GCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCS--WRGVGCNNRT--GSIIMLNLNNPFRDSFDSYEDDAVHELRG--  110 (611)
Q Consensus        38 ~~~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~l~~--  110 (611)
                      -|.++||+||++||+++.+|. .+++| .++|||.  |+||+|+..+  +||++|+|++              +++.|  
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~--------------~~l~g~~   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC--------------CCCCCCC
Confidence            489999999999999999885 68899 7889994  9999998643  4899999998              66666  


Q ss_pred             eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 047139          111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF  190 (611)
Q Consensus       111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~  190 (611)
                      .+|++++++++|++|+++++         |.++|.+|.+|+++++|++|++++|++.+..|..+..+.+|+++++++|. 
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~---------N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~-  136 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGI---------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-  136 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEE---------TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-
T ss_pred             CCChHHhcCccccccccccc---------cccccccccccccccccchhhhccccccccccccccchhhhccccccccc-
Confidence            57788888888888777641         34567788888888888888888888887777778888888888888887 


Q ss_pred             CcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC-CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcc
Q 047139          191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS-LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF  269 (611)
Q Consensus       191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~-L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  269 (611)
                      ..+.+|..+++++.|+++++++|.+.+.+|..+..+.      + ++.+++++|++++..|..+..+..+ +++++.+..
T Consensus       137 ~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~------~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------KLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC------TTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccCchhhccCcccceeecccccccccccccccccc------ccccccccccccccccccccccccccc-ccccccccc
Confidence            5667777788888888888888877777777776665      3 3677777777777777666665443 577777777


Q ss_pred             cccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       270 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      .+.+|..+..+++++++++++|.+.+.+| .++.+++|++|++++|+++|.+|. .++++++|++|++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSF  277 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcC
Confidence            77777767777777777777777765544 466666777777777777666665 455555555555555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.9e-29  Score=251.55  Aligned_cols=256  Identities=24%  Similarity=0.408  Sum_probs=160.1

Q ss_pred             CcEEEccCCcccc--cCCCCccCcccCceEEecC-CccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEE
Q 047139          259 LRYLELWYNSFLG--SIPPSLGNLTFLEELYLTS-NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL  335 (611)
Q Consensus       259 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  335 (611)
                      +++|+|+++.++|  .+|..++++++|++|+|++ |.++|.+|+.++++++|++|+|++|++.+..+. .+..+..|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccchhhhccc
Confidence            4445555554444  2455555555555555554 455555555555555555555555555554333 33444444433


Q ss_pred             EcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccC
Q 047139          336 SLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG  415 (611)
Q Consensus       336 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~  415 (611)
                      ++++                           |.+.+.+|..+..+++++.+++++|.+.+.+|..+......++.+++  
T Consensus       131 ~l~~---------------------------N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~--  181 (313)
T d1ogqa_         131 DFSY---------------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI--  181 (313)
T ss_dssp             ECCS---------------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC--
T ss_pred             cccc---------------------------ccccccCchhhccCcccceeecccccccccccccccccccccccccc--
Confidence            3333                           22233445555566666666666666666666555443222233443  


Q ss_pred             cccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCC
Q 047139          416 NHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMT  495 (611)
Q Consensus       416 n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~  495 (611)
                                                                     ++|++++..|..+..+..+ .++++++      
T Consensus       182 -----------------------------------------------~~n~l~~~~~~~~~~l~~~-~l~l~~~------  207 (313)
T d1ogqa_         182 -----------------------------------------------SRNRLTGKIPPTFANLNLA-FVDLSRN------  207 (313)
T ss_dssp             -----------------------------------------------CSSEEEEECCGGGGGCCCS-EEECCSS------
T ss_pred             -----------------------------------------------ccccccccccccccccccc-ccccccc------
Confidence                                                           4444444444444444322 3544432      


Q ss_pred             CCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc
Q 047139          496 NNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT  575 (611)
Q Consensus       496 ~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~  575 (611)
                        .+.|.+|..++.+++++.+++++|.+++.+| .+..+++|+.|++++|+++|.+|.+++. +++|++|+|++|+++|.
T Consensus       208 --~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~-L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         208 --MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             --EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEEEEE
T ss_pred             --ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhC-CCCCCEEECcCCccccc
Confidence              3455666666677788888888888886654 5788899999999999999999998886 99999999999999999


Q ss_pred             CCccccCCCCCCEeeccCCc-CccC-CCcc
Q 047139          576 IPSELCKLSALHILDLSHNN-LLGP-IPYC  603 (611)
Q Consensus       576 ~p~~l~~l~~L~~L~ls~n~-l~g~-iP~~  603 (611)
                      +|+ ++++++|+.+++++|+ ++|. +|.|
T Consensus       284 iP~-~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         284 IPQ-GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CCC-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCC-cccCCCCCHHHhCCCccccCCCCCCC
Confidence            985 5788999999999997 6775 7876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8.5e-26  Score=231.53  Aligned_cols=190  Identities=26%  Similarity=0.400  Sum_probs=122.2

Q ss_pred             cCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeec
Q 047139          378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYL  457 (611)
Q Consensus       378 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l  457 (611)
                      ..+++++.+++++|.+++..|..   ..++|+.+++++|+++. ++.......++.+++++|.+++..+  +.....|  
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~~---~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L--  265 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL--  265 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGG---GCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC--
T ss_pred             ccccccceeeccCCccCCCCccc---ccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCc--ccccccC--
Confidence            33444445555555444433321   12445555555555442 2221122245555555555554332  2222222  


Q ss_pred             CcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      +++++++|.+++..  .+..++.++.+++.+|++.++          ..+..+++++.|++++|++++..  .+..+++|
T Consensus       266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~----------~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L  331 (384)
T d2omza2         266 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI----------SPISNLKNLTYLTLYFNNISDIS--PVSSLTKL  331 (384)
T ss_dssp             SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC----------GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred             CEeeccCcccCCCC--ccccccccccccccccccccc----------cccchhcccCeEECCCCCCCCCc--ccccCCCC
Confidence            44555888777543  367788889999888877632          23455788999999999998653  37889999


Q ss_pred             CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCC
Q 047139          538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN  594 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n  594 (611)
                      ++|++++|+++ .++ .+.. +++|++|++++|++++..|  +.++++|++|++++|
T Consensus       332 ~~L~L~~n~l~-~l~-~l~~-l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVS-DVS-SLAN-LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCC-CCG-GGGG-CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCC-CCh-hHcC-CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999999998 455 4654 9999999999999997554  788999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.7e-25  Score=224.76  Aligned_cols=342  Identities=28%  Similarity=0.328  Sum_probs=194.2

Q ss_pred             CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      .+.+|++|+++++.++.           + +.+..+++|++|++++|++++ +| .++++++|++|++++|++ .+ ++ 
T Consensus        42 ~l~~l~~L~l~~~~I~~-----------l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i-~~-i~-  104 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS-----------I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQI-AD-IT-  104 (384)
T ss_dssp             HHTTCCEEECCSSCCCC-----------C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CC-CG-
T ss_pred             HhCCCCEEECCCCCCCC-----------c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccc-cc-cc-
Confidence            45566777666665541           2 246677888888888888774 33 277888888888888874 33 22 


Q ss_pred             cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL  277 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  277 (611)
                      .++++++|+.|+++++.+++..+..  ...      .+.......+.+....+.................     ....+
T Consensus       105 ~l~~l~~L~~L~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  171 (384)
T d2omza2         105 PLANLTNLTGLTLFNNQITDIDPLK--NLT------NLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPL  171 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGT--TCT------TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGG
T ss_pred             ccccccccccccccccccccccccc--ccc------cccccccccccccccccccccccccccccccccc-----hhhhh
Confidence            3677777888877777766543322  111      4555555555444222222111111111111111     11122


Q ss_pred             cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCc
Q 047139          278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF  357 (611)
Q Consensus       278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  357 (611)
                      ...+.........|...  ....+..+++++.+++++|.+.+..+   ...+++|++|++++                  
T Consensus       172 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~------------------  228 (384)
T d2omza2         172 ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNG------------------  228 (384)
T ss_dssp             TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCS------------------
T ss_pred             ccccccccccccccccc--cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCC------------------
Confidence            23333333333333322  22334455566666666665554322   23344444444444                  


Q ss_pred             ceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEcc
Q 047139          358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLS  437 (611)
Q Consensus       358 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls  437 (611)
                               |.+..  +..+..+++|+.+++++|.+++..+  + ...++|+.++++++++++..+ ...          
T Consensus       229 ---------n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~~~l~~~~~-~~~----------  283 (384)
T d2omza2         229 ---------NQLKD--IGTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP-LAG----------  283 (384)
T ss_dssp             ---------SCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG-GTT----------
T ss_pred             ---------CCCCC--cchhhcccccchhccccCccCCCCc--c-cccccCCEeeccCcccCCCCc-ccc----------
Confidence                     33222  1245556666677777766665433  1 223566666666666553211 111          


Q ss_pred             CCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEE
Q 047139          438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLV  517 (611)
Q Consensus       438 ~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~  517 (611)
                                 ...+     +.+++++|.+++  ...+..+++++.|++++|+++++.          .+..+++|++|+
T Consensus       284 -----------~~~l-----~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~----------~l~~l~~L~~L~  335 (384)
T d2omza2         284 -----------LTAL-----TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS----------PVSSLTKLQRLF  335 (384)
T ss_dssp             -----------CTTC-----SEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG----------GGGGCTTCCEEE
T ss_pred             -----------cccc-----cccccccccccc--ccccchhcccCeEECCCCCCCCCc----------ccccCCCCCEEE
Confidence                       1122     334446676664  234677888899999888876432          255588899999


Q ss_pred             CcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCC
Q 047139          518 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN  570 (611)
Q Consensus       518 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n  570 (611)
                      +++|++++ ++ .+.++++|++|++++|++++..|  +. ++++|++|+|++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~-~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT-TCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc-cCCCCCEeeCCCC
Confidence            99998884 44 58889999999999999985444  44 4899999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.1e-22  Score=197.06  Aligned_cols=83  Identities=25%  Similarity=0.277  Sum_probs=48.3

Q ss_pred             CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139          234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS  313 (611)
Q Consensus       234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  313 (611)
                      ..+.++.++++++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3455555555555 4455443  456666666666653333456666666666666666665555556666666666666


Q ss_pred             CCcccc
Q 047139          314 DNQWEG  319 (611)
Q Consensus       314 ~n~l~~  319 (611)
                      +|+++.
T Consensus        88 ~n~l~~   93 (305)
T d1xkua_          88 KNQLKE   93 (305)
T ss_dssp             SSCCSB
T ss_pred             CCccCc
Confidence            666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5.2e-22  Score=196.36  Aligned_cols=278  Identities=23%  Similarity=0.261  Sum_probs=169.9

Q ss_pred             CCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccC
Q 047139          204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL  283 (611)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  283 (611)
                      .++.++-++.+++.. |..+.  +      ++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|
T Consensus        11 ~~~~~~C~~~~L~~l-P~~l~--~------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_          11 HLRVVQCSDLGLEKV-PKDLP--P------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             ETTEEECTTSCCCSC-CCSCC--T------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             cCCEEEecCCCCCcc-CCCCC--C------CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            345555555555532 32221  1      67777777777774444567778888888888888876667778888888


Q ss_pred             ceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEE
Q 047139          284 EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLV  363 (611)
Q Consensus       284 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  363 (611)
                      ++|++++|+++ .+|..+  ...++.|++.+|.+.+ ++...+.....+..++...+.. .                   
T Consensus        82 ~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~-~-------------------  137 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPL-K-------------------  137 (305)
T ss_dssp             CEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCC-C-------------------
T ss_pred             CEecccCCccC-cCccch--hhhhhhhhccccchhh-hhhhhhhccccccccccccccc-c-------------------
Confidence            88888888877 355433  3567888888888765 4444666677777776666322 1                   


Q ss_pred             ecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccc
Q 047139          364 IRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG  443 (611)
Q Consensus       364 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~  443 (611)
                           .....+..+..+++|+.+++++|.+.. +|..   ..++++.|++++|...+..+..+.                
T Consensus       138 -----~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~---~~~~L~~L~l~~n~~~~~~~~~~~----------------  192 (305)
T d1xkua_         138 -----SSGIENGAFQGMKKLSYIRIADTNITT-IPQG---LPPSLTELHLDGNKITKVDAASLK----------------  192 (305)
T ss_dssp             -----GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS---CCTTCSEEECTTSCCCEECTGGGT----------------
T ss_pred             -----ccCCCccccccccccCccccccCCccc-cCcc---cCCccCEEECCCCcCCCCChhHhh----------------
Confidence                 111233445566677777777776652 3332   235666666666666555444332                


Q ss_pred             cCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcc
Q 047139          444 PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHL  523 (611)
Q Consensus       444 ~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l  523 (611)
                             .+..+  +.|++++|.+.+..+..+.++++|++|+|++|+++         .+|+.+..+++|++|+|++|+|
T Consensus       193 -------~~~~l--~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~---------~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         193 -------GLNNL--AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---------KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             -------TCTTC--CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---------SCCTTTTTCSSCCEEECCSSCC
T ss_pred             -------ccccc--cccccccccccccccccccccccceeeeccccccc---------ccccccccccCCCEEECCCCcc
Confidence                   22222  33444666666666666677777777777777665         4555666677777777777777


Q ss_pred             cccCcc------cccCCCCCCEEECCCCcCc-ccChhHHhh
Q 047139          524 SGEIPP------SLKNCSLMDSLDLGENQLS-GNIPAWIGE  557 (611)
Q Consensus       524 ~~~~p~------~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~  557 (611)
                      +.....      .+....+|+.|++++|.+. ..+++..++
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            633222      2345567778888888764 345554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.8e-22  Score=196.10  Aligned_cols=159  Identities=23%  Similarity=0.216  Sum_probs=76.3

Q ss_pred             CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcc-cccCCCccchhhhcCcccCCC
Q 047139          154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS-LNQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~~~~~  232 (611)
                      +.+++|+|++|+|++..+.+|.++++|++|++++|. +....+..+.+++.+++++.. .+.+....+..+..++     
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~-----  105 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-----  105 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-----
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccc-----
Confidence            345555555555554444445555555555555555 333333444445555554433 3333333344444444     


Q ss_pred             CCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEc
Q 047139          233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL  312 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  312 (611)
                       +|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|+++++
T Consensus       106 -~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         106 -RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             -TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence             4555555555544333444444445555555555554333344444455555555555554444444444555555555


Q ss_pred             cCCcccc
Q 047139          313 SDNQWEG  319 (611)
Q Consensus       313 ~~n~l~~  319 (611)
                      ++|++.+
T Consensus       185 ~~N~l~~  191 (284)
T d1ozna_         185 HQNRVAH  191 (284)
T ss_dssp             CSSCCCE
T ss_pred             hhccccc
Confidence            5554444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-22  Score=196.42  Aligned_cols=225  Identities=24%  Similarity=0.247  Sum_probs=164.6

Q ss_pred             CEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCc
Q 047139          157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLA  236 (611)
Q Consensus       157 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~  236 (611)
                      ..++.++++++ .+|..+.  +.+++|+|++|+ ++...+..|.++++|++|++++|.+....+..+....      .++
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~------~~~   83 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLE   83 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccc------ccc
Confidence            34566777777 6676554  578999999999 4544456789999999999999999888887777766      788


Q ss_pred             EEEcc-CCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139          237 RLELG-YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN  315 (611)
Q Consensus       237 ~L~Ls-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  315 (611)
                      .++.. .+.+....+..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N  163 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC
Confidence            88765 55566666778888999999999999887666777888889999999999998766777888889999999999


Q ss_pred             ccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccc
Q 047139          316 QWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD  395 (611)
Q Consensus       316 ~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  395 (611)
                      ++.+..+ ..+.++++|+.+++++|.                           +.+..|.+|..+++|++|++++|++.+
T Consensus       164 ~l~~l~~-~~f~~l~~L~~l~l~~N~---------------------------l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         164 RISSVPE-RAFRGLHSLDRLLLHQNR---------------------------VAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CCCEECT-TTTTTCTTCCEEECCSSC---------------------------CCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cccccch-hhhccccccchhhhhhcc---------------------------ccccChhHhhhhhhccccccccccccc
Confidence            8876444 477788888887777733                           233445555555666666666666655


Q ss_pred             ccchhHHhcCCCCCEEEccCccccc
Q 047139          396 TLPSWFLQLNLTLDELDVGGNHLSG  420 (611)
Q Consensus       396 ~~p~~~~~~~~~L~~L~ls~n~l~~  420 (611)
                      ..|..+.. .++|+++++++|.+.+
T Consensus       216 ~~~~~~~~-~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         216 LPTEALAP-LRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCHHHHTT-CTTCCEEECCSSCEEC
T ss_pred             cccccccc-ccccCEEEecCCCCCC
Confidence            44444433 3556666666665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-20  Score=182.34  Aligned_cols=191  Identities=28%  Similarity=0.266  Sum_probs=152.9

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      ++++. +|+.+.  +++++|+|++|+++          +..+..|.++++|++|+|++|+++ .+| .++.+++|++|++
T Consensus        20 ~~L~~-iP~~lp--~~l~~L~Ls~N~i~----------~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          20 RNLTA-LPPDLP--KDTTILHLSENLLY----------TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             SCCSS-CCSCCC--TTCCEEECTTSCCS----------EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCCCe-eCcCcC--cCCCEEECcCCcCC----------CcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            55553 565553  45677766666554          334567888999999999999988 444 3678899999999


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW  265 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  265 (611)
                      ++|++ . ..+..+.++++|++|++++|.+.+..+..+..+.      ++++|++++|.++...+..+..++++++++++
T Consensus        85 s~N~l-~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          85 SHNQL-Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             CSSCC-S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccc-c-ccccccccccccccccccccccceeecccccccc------ccccccccccccceeccccccccccchhcccc
Confidence            99984 3 3577788899999999999998887777777776      89999999999987777777888999999999


Q ss_pred             CCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139          266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF  320 (611)
Q Consensus       266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  320 (611)
                      +|++++..+..+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+...
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            99998777777888999999999999988 7888888888999999999987653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-20  Score=179.72  Aligned_cols=198  Identities=25%  Similarity=0.164  Sum_probs=158.7

Q ss_pred             CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139          118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR  197 (611)
Q Consensus       118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (611)
                      +...+..+|.+++++          + .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++ + .++ 
T Consensus         8 ~~~~~~~v~C~~~~L----------~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~-~l~-   71 (266)
T d1p9ag_           8 KVASHLEVNCDKRNL----------T-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-T-KLQ-   71 (266)
T ss_dssp             CSTTCCEEECTTSCC----------S-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-C-EEE-
T ss_pred             ccCCCeEEEccCCCC----------C-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-c-ccc-
Confidence            344445556555554          3 4676553  6899999999999976667899999999999999985 3 344 


Q ss_pred             cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139          198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL  277 (611)
Q Consensus       198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  277 (611)
                      .++.+++|++|++++|++++. +..+..++      +|++|++++|.+.+..+..+..+.++++|++++|.+....+..+
T Consensus        72 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~  144 (266)
T d1p9ag_          72 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL  144 (266)
T ss_dssp             CCSCCTTCCEEECCSSCCSSC-CCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ccccccccccccccccccccc-cccccccc------ccccccccccccceeeccccccccccccccccccccceeccccc
Confidence            467899999999999998754 44566666      89999999999987778888889999999999999987666777


Q ss_pred             cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139          278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT  340 (611)
Q Consensus       278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~  340 (611)
                      ..+++++++++++|++++..+..|..+++|++|+|++|+++ .+|. .+..+++|+.|++++|
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~-~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEECCSC
T ss_pred             cccccchhcccccccccccCccccccccccceeecccCCCc-ccCh-hHCCCCCCCEEEecCC
Confidence            88899999999999999877778888999999999999988 5676 4566788888888874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.2e-18  Score=172.10  Aligned_cols=95  Identities=25%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCC
Q 047139          179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN  258 (611)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  258 (611)
                      ++++||++++.+ + .+|+.   .++|++|++++|+++ .+|+.+   .      +|+.|++++|+++ .++..   .+.
T Consensus        39 ~l~~LdLs~~~L-~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~------~L~~L~l~~n~l~-~l~~l---p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGL-S-SLPEL---PPHLESLVASCNSLT-ELPELP---Q------SLKSLLVDNNNLK-ALSDL---PPL   99 (353)
T ss_dssp             TCSEEECTTSCC-S-CCCSC---CTTCSEEECCSSCCS-SCCCCC---T------TCCEEECCSSCCS-CCCSC---CTT
T ss_pred             CCCEEEeCCCCC-C-CCCCC---CCCCCEEECCCCCCc-ccccch---h------hhhhhhhhhcccc-hhhhh---ccc
Confidence            566677777663 2 35542   345666666666665 233322   1      5666666666554 22211   124


Q ss_pred             CcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139          259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN  294 (611)
Q Consensus       259 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  294 (611)
                      |++|++++|.+. .+|. ++.+++|++|++++|.+.
T Consensus       100 L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         100 LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccc-cccc-hhhhccceeecccccccc
Confidence            555555555554 3343 445555555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=8.8e-18  Score=168.81  Aligned_cols=119  Identities=27%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             CCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139          153 ITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS  232 (611)
Q Consensus       153 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~  232 (611)
                      +++|++|++++|+++ .+|+.+   .+|+.|++++|++ + .++    .++                             
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l-~-~l~----~lp-----------------------------   97 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNL-K-ALS----DLP-----------------------------   97 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCC-S-CCC----SCC-----------------------------
T ss_pred             CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhccc-c-hhh----hhc-----------------------------
Confidence            356777777777776 556543   3566666666663 1 111    111                             


Q ss_pred             CCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEc
Q 047139          233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL  312 (611)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  312 (611)
                      +.|++|++++|.+. .+|. ++.+++|++|+++++.+.. .|..   ...+..+.+.++...  .+..+..++.++.+++
T Consensus        98 ~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYA  169 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEEC
T ss_pred             cccccccccccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceeccc
Confidence            14555555555554 3332 3455666666666665542 2221   234445555444433  2233555566666666


Q ss_pred             cCCccc
Q 047139          313 SDNQWE  318 (611)
Q Consensus       313 ~~n~l~  318 (611)
                      ++|...
T Consensus       170 ~~n~~~  175 (353)
T d1jl5a_         170 DNNSLK  175 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-21  Score=201.19  Aligned_cols=115  Identities=24%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             CCCEEEccCCCCCCCC-CccCCCCCCCCEEEccCCCCCc---ccccccCCCCCCCCEEEcccccCCCccchhhhc-Cccc
Q 047139          155 NLLSLDLSSNDLQGDI-PDGFSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG-LSEC  229 (611)
Q Consensus       155 ~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~~  229 (611)
                      +|++||++.+++++.. .+.+..+++++.|+|++|.+..   ..+...+..+++|++|++++|.++......+.. +.  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~--   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ--   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC--
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh--
Confidence            5778888888876421 2234566778888888887422   233455667788888888888775332222221 11  


Q ss_pred             CCCCCCcEEEccCCCCCcc----CCcccCCCCCCcEEEccCCcccc
Q 047139          230 INSSSLARLELGYNQLTGN----LPISLGYLKNLRYLELWYNSFLG  271 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  271 (611)
                      ....+|++|++++|++++.    ++..+..+++|++|++++|.+..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            0112677777777777643    34455667777777777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.6e-20  Score=192.70  Aligned_cols=387  Identities=17%  Similarity=0.125  Sum_probs=193.7

Q ss_pred             CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCcc----chhhhcCcccCCCCCCcEEEccCCCCCcc----CC
Q 047139          179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEV----SDFIDGLSECINSSSLARLELGYNQLTGN----LP  250 (611)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~----~p  250 (611)
                      +|+.||+++|++....+.+.+..++++++|+|++|.++...    ...+...+      +|++|+|++|+++..    +.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~------~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP------ALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT------TCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC------CCCEEECcCCcCChHHHHHHH
Confidence            57888998888544444555667788888888888876432    23334444      788888888877532    22


Q ss_pred             cccC-CCCCCcEEEccCCccccc----CCCCccCcccCceEEecCCccccCCCcC----C-CCCCCCCEEEccCCccccc
Q 047139          251 ISLG-YLKNLRYLELWYNSFLGS----IPPSLGNLTFLEELYLTSNQMNGKFPES----F-GQLSAIRVLELSDNQWEGF  320 (611)
Q Consensus       251 ~~l~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~----l-~~l~~L~~L~L~~n~l~~~  320 (611)
                      ..+. ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......    + ...................
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            2222 234688888888877643    3445666777888888777765321111    1 1122334444444333211


Q ss_pred             cC---hhhhcCCCCCCEEEcCccCCCCceeecc-CC-CCCCcceeEEEecccccCcc----cchhccCCCCCCEEEccCc
Q 047139          321 IT---DAHLRNLTSLEELSLIKTSNSSLSFNIS-FD-WIPPFKLRYLVIRYYQLGPK----FPTWLRNQTELTTLVLNSA  391 (611)
Q Consensus       321 ~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n  391 (611)
                      ..   ...+.....++.+.++++.......... .. .........+.+..+.....    ....+...+.++.+++.+|
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence            10   1233445666666666532200000000 00 01112334444444433321    1122334455555555555


Q ss_pred             ccccccc----hhHHhcCCCCCEEEccCcccccccCcc----cc-cCCCceEEccCCcccccCCCCCCCcceeecCcccC
Q 047139          392 SISDTLP----SWFLQLNLTLDELDVGGNHLSGRIPNT----LV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDI  462 (611)
Q Consensus       392 ~l~~~~p----~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~-~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~L  462 (611)
                      .+.....    .........++.+++++|.+.......    +. ...++.                          +++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~--------------------------l~l  290 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE--------------------------LSL  290 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE--------------------------EEC
T ss_pred             cccccccchhhcccccccccccccccccccccccccccccccccccccccc--------------------------ccc
Confidence            4432211    111112234555555555443221110    00 112333                          333


Q ss_pred             CCCeeecccccch-----hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cccccc-
Q 047139          463 SFNSINGSIPQSV-----GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLK-  532 (611)
Q Consensus       463 s~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~-  532 (611)
                      ++|.++......+     .....|+.+++++|.+++....    .+...+...++|++|+|++|++++.    ++..+. 
T Consensus       291 ~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~----~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~  366 (460)
T d1z7xw1         291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS----HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  366 (460)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH----HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ccccccccccchhhccccccccccccccccccchhhhhhh----hcccccccccchhhhheeeecccCcccchhhhhhhc
Confidence            5555543222211     1234577777777665422111    1222333455777777777777643    233332 


Q ss_pred             CCCCCCEEECCCCcCccc----ChhHHhhcCCCCcEEECcCCcCcccCCcc----cc-CCCCCCEeeccCCcCccCCCc
Q 047139          533 NCSLMDSLDLGENQLSGN----IPAWIGESMPSLSILRLRSNHFNGTIPSE----LC-KLSALHILDLSHNNLLGPIPY  602 (611)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~----ip~~l~~~l~~L~~L~ls~n~l~~~~p~~----l~-~l~~L~~L~ls~n~l~g~iP~  602 (611)
                      ..+.|++|+|++|+|++.    ++..+.. +++|++|+|++|+++......    +. +...|+.|++.+|.+....+.
T Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         367 PGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             ccCCCCEEECCCCCCChHHHHHHHHHHhc-CCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence            355677777777777643    2333333 677777777777776543322    22 234677777777777655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=150.19  Aligned_cols=198  Identities=25%  Similarity=0.359  Sum_probs=149.2

Q ss_pred             ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139          106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL  185 (611)
Q Consensus       106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  185 (611)
                      .++++.+  .+..+.+|++|++.+|+++           .++ .+..+++|++|++++|.+++..|  +.++++|+++++
T Consensus        29 ~~~~d~~--~~~~l~~L~~L~l~~~~i~-----------~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          29 SNVTDTV--TQADLDGITTLSAFGTGVT-----------TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             SSTTSEE--CHHHHHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             CCcCCcC--CHHHcCCcCEEECCCCCCC-----------cch-hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            3444433  3456777888877777664           233 47889999999999999885433  899999999999


Q ss_pred             cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139          186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW  265 (611)
Q Consensus       186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  265 (611)
                      ++|.+ + .+ ..+.++++|++++++++...+..+  +...+      .++.+.++++.+...  ..+..+++|++|+++
T Consensus        93 ~~n~~-~-~i-~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~------~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          93 SGNPL-K-NV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLS------NLQVLYLDLNQITNI--SPLAGLTNLQYLSIG  159 (227)
T ss_dssp             CSCCC-S-CC-GGGTTCTTCCEEECTTSCCCCCGG--GTTCT------TCCEEECCSSCCCCC--GGGGGCTTCCEEECC
T ss_pred             ccccc-c-cc-ccccccccccccccccccccccch--hcccc------chhhhhchhhhhchh--hhhcccccccccccc
Confidence            99984 3 23 357889999999999988765432  33333      888999988888643  346678889999999


Q ss_pred             CCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      +|.+.+.  ..++++++|++|++++|++++ ++ .++++++|++|++++|++++. +  .++++++|+.|++++
T Consensus       160 ~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         160 NAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEEE
T ss_pred             ccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c--ccccCCCCCEEEeeC
Confidence            9988643  237888999999999998875 44 378889999999999998763 3  378889999988864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=151.59  Aligned_cols=209  Identities=21%  Similarity=0.120  Sum_probs=145.7

Q ss_pred             eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCC-CccCCCCCCCCEEEccCCC
Q 047139          111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDI-PDGFSSLNSLQLLDLSGNS  189 (611)
Q Consensus       111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~  189 (611)
                      .+|+.+.  +++++|++++|+++          ...+..|.++++|++|++++|.+...+ +..|.++++++++++..+.
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~----------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLR----------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCC----------EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CcCCCCC--CCCCEEECcCCcCC----------ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            3554442  45667666666554          333446889999999999999887644 4568889999999987643


Q ss_pred             CCcccccccCCCCCCCCEEEcccccCCCccch-hhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCC-CCcEEEccCC
Q 047139          190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSD-FIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK-NLRYLELWYN  267 (611)
Q Consensus       190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n  267 (611)
                      -+....+..+.++++|+++++++|.+....+. .+..+.      .+..+..+++.+....+..+..++ .++.+++++|
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~------~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ------KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS------CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccchhhhccccccccccccc------ccccccccccccccccccccccccccceeeecccc
Confidence            25556667788999999999999988754332 222233      677777777788766666776654 7888999999


Q ss_pred             cccccCCCCccCcccCceE-EecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          268 SFLGSIPPSLGNLTFLEEL-YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       268 ~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      +++.. +......++++++ ++++|+++...+..|.++++|++|++++|+++. +|...+.++++|+.+++.+
T Consensus       164 ~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         164 GIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSEES
T ss_pred             ccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcCCC
Confidence            98854 4444455565555 567777875444568889999999999999875 5554566666666555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1e-15  Score=141.41  Aligned_cols=145  Identities=33%  Similarity=0.409  Sum_probs=74.1

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +..+++|++|++++|++++ ++ .++.+++|++|++++|++ ++ ++ .+.++++|+.|++++|.+...  ..+..++  
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i-~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~--  134 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV-KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLP--  134 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCT--
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc-cc-cc-ccccccccccccccccccccc--ccccccc--
Confidence            5566667777777766664 23 256666666666666663 22 33 355666666666666655421  2233333  


Q ss_pred             CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139          230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV  309 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  309 (611)
                          +++.+++++|.+++  +..+..+++|+++++++|++++ ++. +.++++|++|++++|.++. ++ .+.++++|++
T Consensus       135 ----~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~  204 (210)
T d1h6ta2         135 ----QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (210)
T ss_dssp             ----TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             ----cccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCE
Confidence                55555555555542  2233444555555555555442 221 4445555555555554442 22 2444445555


Q ss_pred             EEcc
Q 047139          310 LELS  313 (611)
Q Consensus       310 L~L~  313 (611)
                      |+|+
T Consensus       205 L~Ls  208 (210)
T d1h6ta2         205 LELF  208 (210)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            5443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.3e-16  Score=141.14  Aligned_cols=162  Identities=31%  Similarity=0.420  Sum_probs=89.0

Q ss_pred             CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCC
Q 047139          152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN  231 (611)
Q Consensus       152 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~  231 (611)
                      .+.++++|++++|.+.. + +.++.+++|++|++++|+ +++. + .++++++|++|++++|.+....  .+..++    
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~-l~~~-~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~----  106 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQ-LTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLT----  106 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSC-CCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCT----
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccc-ccCc-c-cccCCccccccccccccccccc--cccccc----
Confidence            34555555555555542 2 234555555555555555 2221 1 2555555555555555544322  233333    


Q ss_pred             CCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEE
Q 047139          232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE  311 (611)
Q Consensus       232 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  311 (611)
                        +|+.|+++++.....  ..+..+++|++|++++|++.. ++ .+..+++|++|++.+|++++ ++ .++++++|++|+
T Consensus       107 --~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         107 --NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLD  178 (199)
T ss_dssp             --TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             --ccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc-cccCCCCCCEEE
Confidence              566666666655432  235566667777777666652 22 36666677777777776664 22 266677777777


Q ss_pred             ccCCccccccChhhhcCCCCCCEE
Q 047139          312 LSDNQWEGFITDAHLRNLTSLEEL  335 (611)
Q Consensus       312 L~~n~l~~~~~~~~l~~l~~L~~L  335 (611)
                      +++|++++ ++  .++.+++|++|
T Consensus       179 ls~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCC-CG--GGGGCTTCSEE
T ss_pred             CCCCCCCC-Cc--cccCCCCCCcC
Confidence            77777654 22  35666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.3e-15  Score=142.81  Aligned_cols=171  Identities=27%  Similarity=0.322  Sum_probs=131.7

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      .+..+.+|++|++.+|.++. ++ .+..+++|++|++++|++ .+..  .+.++++|+++++++|.++..  ..++.++ 
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i-~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~-  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQI-TDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQ-  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCT-
T ss_pred             CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCcee-eccc--ccccccccccccccccccccc--ccccccc-
Confidence            45678899999999999984 43 589999999999999984 4332  388999999999999987743  2355555 


Q ss_pred             cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                           +|++++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+.+..  .++++++|+
T Consensus       108 -----~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~  176 (227)
T d1h6ua2         108 -----SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLT  176 (227)
T ss_dssp             -----TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             -----ccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccce
Confidence                 899999999887643  3456778889999988887643  23667888999999999887432  378889999


Q ss_pred             EEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139          309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTS  341 (611)
Q Consensus       309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~  341 (611)
                      +|++++|++++ ++  .++++++|++|++++|+
T Consensus       177 ~L~Ls~n~l~~-l~--~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         177 TLKADDNKISD-IS--PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             EEECCSSCCCC-CG--GGGGCTTCCEEECTTSC
T ss_pred             ecccCCCccCC-Ch--hhcCCCCCCEEECcCCc
Confidence            99999998876 33  36778888888887743

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.1e-16  Score=152.15  Aligned_cols=100  Identities=16%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             hhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC-cccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139          475 VGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN-HLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA  553 (611)
Q Consensus       475 l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  553 (611)
                      ..++++|++|++++|.       .+++..+..+..+++|++|++++| .+++.....+.++++|+.|+++++ +++..-.
T Consensus       171 ~~~~~~L~~L~L~~~~-------~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~  242 (284)
T d2astb2         171 VRRCPNLVHLDLSDSV-------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ  242 (284)
T ss_dssp             HHHCTTCSEEECTTCT-------TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH
T ss_pred             cccccccccccccccc-------CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHH
Confidence            3567788888888764       223344556667888888888886 577766677888999999999988 5544444


Q ss_pred             HHhhcCCCCcEEECcCCcCcccCCccccCCCC
Q 047139          554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSA  585 (611)
Q Consensus       554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  585 (611)
                      .+...+|.|+   +..+++++..++.+++...
T Consensus       243 ~l~~~lp~L~---i~~~~ls~~~~~~~~~~~~  271 (284)
T d2astb2         243 LLKEALPHLQ---INCSHFTTIARPTIGNKKN  271 (284)
T ss_dssp             HHHHHSTTSE---ESCCCSCCTTCSSCSSTTC
T ss_pred             HHHHhCcccc---ccCccCCCCCCCccCcccc
Confidence            5544577665   5777888777777665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1e-16  Score=146.10  Aligned_cols=135  Identities=24%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139          149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE  228 (611)
Q Consensus       149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  228 (611)
                      .|.++++|++|++++|.+.+..+..+..+++|++|++++|+ +....+..|.++++|++|+|++|.+++           
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~-----------  116 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC-----------  116 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCE-----------
T ss_pred             ccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCccccc-----------
Confidence            45555555555555555555555555555555555555555 333333444555555555555555444           


Q ss_pred             cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139          229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR  308 (611)
Q Consensus       229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  308 (611)
                                         ..+..|..+++|+++++++|.+....+. ..-...++.+.+..+.++...|..+   ..++
T Consensus       117 -------------------i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~  173 (192)
T d1w8aa_         117 -------------------VMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQ  173 (192)
T ss_dssp             -------------------ECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSB
T ss_pred             -------------------cCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCE
Confidence                               4444455555555555555554422111 0011223444455555554444433   3445


Q ss_pred             EEEccCCccc
Q 047139          309 VLELSDNQWE  318 (611)
Q Consensus       309 ~L~L~~n~l~  318 (611)
                      .++|+.|.+.
T Consensus       174 l~~L~~n~l~  183 (192)
T d1w8aa_         174 IKDLPHSEFK  183 (192)
T ss_dssp             GGGSCTTTCC
T ss_pred             eeecCHhhCc
Confidence            5566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8e-16  Score=142.15  Aligned_cols=167  Identities=26%  Similarity=0.313  Sum_probs=137.0

Q ss_pred             cCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccC
Q 047139          151 FNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI  230 (611)
Q Consensus       151 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~  230 (611)
                      ..+.+|++|++++|.++. ++ .+..+++|++|++++|++ ++ ++ .++++++|++|++++|++++. + .+..++   
T Consensus        43 ~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i-~~-l~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~---  112 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TD-IK-PLANLKNLGWLFLDENKVKDL-S-SLKDLK---  112 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CC-CG-GGTTCTTCCEEECCSSCCCCG-G-GGTTCT---
T ss_pred             HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccc-cC-cc-ccccCcccccccccccccccc-c-cccccc---
Confidence            356789999999999984 33 488999999999999994 44 33 478899999999999998853 2 356565   


Q ss_pred             CCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139          231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL  310 (611)
Q Consensus       231 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  310 (611)
                         +|+.|++++|.+..  ...+..+++++.+++++|.+++.  ..+..+++|+++++++|++++ ++ .+.++++|++|
T Consensus       113 ---~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         113 ---KLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNL  183 (210)
T ss_dssp             ---TCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             ---cccccccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEE
Confidence               99999999999863  34678899999999999998743  457788999999999999985 44 38899999999


Q ss_pred             EccCCccccccChhhhcCCCCCCEEEcCc
Q 047139          311 ELSDNQWEGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       311 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      ++++|+++. ++  .+.++++|++|++++
T Consensus       184 ~Ls~N~i~~-l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHISD-LR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCB-CG--GGTTCTTCSEEEEEE
T ss_pred             ECCCCCCCC-Ch--hhcCCCCCCEEEccC
Confidence            999999875 43  588999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2e-16  Score=144.15  Aligned_cols=168  Identities=23%  Similarity=0.246  Sum_probs=114.0

Q ss_pred             EEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcE
Q 047139          158 SLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLAR  237 (611)
Q Consensus       158 ~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~  237 (611)
                      +++.++++++ .+|..+.  +++++|+|++|++.....+..|.++++|++|++++|.+....+..+..++      +|++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~------~L~~   82 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------HIQE   82 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------TCCE
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc------ccce
Confidence            4555555555 4454432  45666666666631122344456677777777777777777777777666      7888


Q ss_pred             EEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcc
Q 047139          238 LELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW  317 (611)
Q Consensus       238 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  317 (611)
                      |++++|+++...+..|.++++|++|+|++|++++..|.+|..+++|++|+|++|.+........ -...++.+.+..+.+
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~  161 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAA  161 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCe
Confidence            8888888887778889999999999999999998888889999999999999999875432111 112355566667777


Q ss_pred             ccccChhhhcCCCCCCEEEcCc
Q 047139          318 EGFITDAHLRNLTSLEELSLIK  339 (611)
Q Consensus       318 ~~~~~~~~l~~l~~L~~L~l~~  339 (611)
                      ....|.    .+..++.++++.
T Consensus       162 ~c~~p~----~l~~~~l~~L~~  179 (192)
T d1w8aa_         162 RCGAPS----KVRDVQIKDLPH  179 (192)
T ss_dssp             BBCSST----TTTTSBGGGSCT
T ss_pred             EeCCCh----hhcCCEeeecCH
Confidence            665554    334445555555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.3e-16  Score=145.30  Aligned_cols=74  Identities=22%  Similarity=0.117  Sum_probs=37.1

Q ss_pred             cCCCCeeecccccchhccCCCCeE-ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCE
Q 047139          461 DISFNSINGSIPQSVGNLKQLLTL-VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDS  539 (611)
Q Consensus       461 ~Ls~n~l~~~~~~~l~~l~~L~~L-~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  539 (611)
                      ++++|+++...+. ..+.+++..+ ++++|+++++....|        ..+++|++|++++|+++...+..|.+++.|+.
T Consensus       159 ~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f--------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         159 WLNKNGIQEIHNC-AFNGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             ECCSSCCCEECTT-TTTTCCEEEEECTTCTTCCCCCTTTT--------TTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ecccccccccccc-cccchhhhccccccccccccccHHHh--------cCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            3355555532222 2233443333 345555554433333        33677777777777777433444555555555


Q ss_pred             EECC
Q 047139          540 LDLG  543 (611)
Q Consensus       540 L~Ls  543 (611)
                      +++.
T Consensus       230 l~~~  233 (242)
T d1xwdc1         230 RSTY  233 (242)
T ss_dssp             SSEE
T ss_pred             CcCC
Confidence            5443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.6e-15  Score=137.44  Aligned_cols=163  Identities=26%  Similarity=0.340  Sum_probs=132.6

Q ss_pred             cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccc
Q 047139          117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS  196 (611)
Q Consensus       117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  196 (611)
                      ..+.++++|+++++.++.           + +.+..+++|++|++++|++++. +. ++++++|++|++++|.+ . .++
T Consensus        37 ~~l~~l~~L~l~~~~i~~-----------l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~-~-~~~  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-----------I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQI-A-DIT  100 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-----------C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC-C-CCG
T ss_pred             HHhcCCCEEECCCCCCCC-----------c-cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccc-c-ccc
Confidence            456788888888887652           2 2478899999999999999854 33 99999999999999984 2 233


Q ss_pred             ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC
Q 047139          197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS  276 (611)
Q Consensus       197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  276 (611)
                       .+.++++|++|+++++.+....  .+..++      +|+.|++++|++.. + +.+..+++|++|++.+|++++. + .
T Consensus       101 -~l~~l~~L~~L~l~~~~~~~~~--~~~~l~------~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~  167 (199)
T d2omxa2         101 -PLANLTNLTGLTLFNNQITDID--PLKNLT------NLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-P  167 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCCG--GGTTCT------TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-G
T ss_pred             -cccccccccccccccccccccc--ccchhh------hhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-c
Confidence             4889999999999999887543  355555      99999999999973 3 4688999999999999999854 3 4


Q ss_pred             ccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139          277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL  310 (611)
Q Consensus       277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  310 (611)
                      ++++++|++|++++|++++ ++ .++++++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            8899999999999999985 44 47888998876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.5e-15  Score=144.58  Aligned_cols=221  Identities=17%  Similarity=0.189  Sum_probs=135.2

Q ss_pred             CCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCC
Q 047139          303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE  382 (611)
Q Consensus       303 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  382 (611)
                      ...+|++|+++++.+........+.++++|++|++.+|.                           +.+..+..+..+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~---------------------------l~~~~~~~l~~~~~   96 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR---------------------------LSDPIVNTLAKNSN   96 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB---------------------------CCHHHHHHHTTCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC---------------------------CCcHHHHHHhcCCC
Confidence            345677777777766544333345556666666555532                           23344455666677


Q ss_pred             CCEEEccCc-ccccccchhHHhcCCCCCEEEccCcc-cccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcc
Q 047139          383 LTTLVLNSA-SISDTLPSWFLQLNLTLDELDVGGNH-LSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDL  460 (611)
Q Consensus       383 L~~L~l~~n-~l~~~~p~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L  460 (611)
                      |++|++++| .+++..-..+...+++|++|+++++. ++..                                       
T Consensus        97 L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~---------------------------------------  137 (284)
T d2astb2          97 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------------------------------  137 (284)
T ss_dssp             CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---------------------------------------
T ss_pred             CcCccccccccccccccchhhHHHHhccccccccccccccc---------------------------------------
Confidence            777777775 44433333334445666666666542 2110                                       


Q ss_pred             cCCCCeeecccccch-hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC-cccccCcccccCCCCCC
Q 047139          461 DISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN-HLSGEIPPSLKNCSLMD  538 (611)
Q Consensus       461 ~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~  538 (611)
                               .+...+ ..+++|+.|+++++... +..    ..+.....++++|++|++++| .+++..+..+.++++|+
T Consensus       138 ---------~~~~~~~~~~~~L~~L~l~~~~~~-i~~----~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         138 ---------HVQVAVAHVSETITQLNLSGYRKN-LQK----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             ---------HHHHHHHHSCTTCCEEECCSCGGG-SCH----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ---------cchhhhcccccccchhhhcccccc-ccc----ccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence                     011112 22467888888765210 111    123333456889999999997 58888888899999999


Q ss_pred             EEECCCC-cCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccccc
Q 047139          539 SLDLGEN-QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF  607 (611)
Q Consensus       539 ~L~Ls~N-~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~  607 (611)
                      +|++++| .+++.....+.+ +++|+.|++++|--.+.++.-...+++   |++..+++++..|..+++-
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNK  269 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGG-CTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCSST
T ss_pred             EEECCCCCCCChHHHHHHhc-CCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCCCccCcc
Confidence            9999996 688777777776 999999999998222222222233445   4567788888877776653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.9e-14  Score=116.27  Aligned_cols=100  Identities=22%  Similarity=0.345  Sum_probs=48.5

Q ss_pred             ccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCE
Q 047139          460 LDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDS  539 (611)
Q Consensus       460 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  539 (611)
                      |++++|+++ .++ .+.++++|++|++++|+++         .+|+.++.+++|++|++++|++++ +| .+..+++|++
T Consensus         3 L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~---------~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~   69 (124)
T d1dcea3           3 LHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR---------ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE   69 (124)
T ss_dssp             EECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC---------CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred             EEcCCCCCC-CCc-ccccCCCCCEEECCCCccC---------cchhhhhhhhcccccccccccccc-cC-ccccccccCe
Confidence            344555554 222 2455555555555555544         344444445555555555555552 22 2455555555


Q ss_pred             EECCCCcCcccCh-hHHhhcCCCCcEEECcCCcCc
Q 047139          540 LDLGENQLSGNIP-AWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       540 L~Ls~N~l~~~ip-~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      |++++|++++... ..+.. +++|++|++++|+++
T Consensus        70 L~l~~N~i~~~~~~~~l~~-~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          70 LLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLC  103 (124)
T ss_dssp             EECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGG
T ss_pred             EECCCCccCCCCCchhhcC-CCCCCEEECCCCcCC
Confidence            5555555542111 22222 555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-13  Score=115.62  Aligned_cols=103  Identities=26%  Similarity=0.431  Sum_probs=78.2

Q ss_pred             CeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCC
Q 047139          482 LTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS  561 (611)
Q Consensus       482 ~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~  561 (611)
                      ++|++++|+++++.          .+..+++|++|++++|+++ .+|..+..+++|+.|++++|+|+ .+|. +.. +++
T Consensus         1 R~L~Ls~n~l~~l~----------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~-l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTVLC----------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VAN-LPR   66 (124)
T ss_dssp             SEEECTTSCCSSCC----------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTT-CSS
T ss_pred             CEEEcCCCCCCCCc----------ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-ccc-ccc
Confidence            46788888877432          2455788888888888887 66777888888888888888888 4553 544 888


Q ss_pred             CcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCcc
Q 047139          562 LSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLLG  598 (611)
Q Consensus       562 L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~g  598 (611)
                      |++|++++|+++... +..+..+++|++|++++|+++.
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            888888888888432 2467788888888888888864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.2e-14  Score=122.98  Aligned_cols=119  Identities=21%  Similarity=0.243  Sum_probs=73.4

Q ss_pred             CcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      ++|+|++|+++ .++..+..+++|+.|++++|+|++++          .+..+++|++|++++|+++...+..+..+++|
T Consensus        21 r~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~----------~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          21 RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD----------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEEC----------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cEEECCCCCCC-ccCccccccccCCEEECCCCCCCccC----------CcccCcchhhhhcccccccCCCcccccccccc
Confidence            55556777776 34555566777777777777666332          13346677777777777765444445667777


Q ss_pred             CEEECCCCcCcccChh--HHhhcCCCCcEEECcCCcCcccCCc----cccCCCCCCEee
Q 047139          538 DSLDLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPS----ELCKLSALHILD  590 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~--~l~~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~  590 (611)
                      +.|++++|+++ .++.  .+. .+++|++|++++|+++ ..|.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~-~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccc-ccccccccc-cccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            77777777766 3332  333 3677777777777776 3332    355667777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=5e-15  Score=148.02  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCCcCcc
Q 047139          474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      .+..++.|++|++++|++.+-   .+...+.+.+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~---g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhhhhhccccccccccccc---ccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            344556677777766665421   11111233344566677777777766532    33455666777777777777765


Q ss_pred             cChhHHhhc-----CCCCcEEECcCCcCccc----CCcccc-CCCCCCEeeccCCcCcc
Q 047139          550 NIPAWIGES-----MPSLSILRLRSNHFNGT----IPSELC-KLSALHILDLSHNNLLG  598 (611)
Q Consensus       550 ~ip~~l~~~-----l~~L~~L~ls~n~l~~~----~p~~l~-~l~~L~~L~ls~n~l~g  598 (611)
                      .....++..     .+.|++|++++|+++..    +...+. +.+.|+.|++++|++..
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            443333221     24577777777776542    222232 35667777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.3e-14  Score=121.86  Aligned_cols=111  Identities=25%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139          150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC  229 (611)
Q Consensus       150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~  229 (611)
                      +.+..++++|+|++|+|+ .+|..+..+++|++|++++|++ . .+ +.+..+++|++|++++|.++...+..+..++  
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i-~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~--   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-R-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCC-C-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCC-C-cc-CCcccCcchhhhhcccccccCCCcccccccc--
Confidence            556677777888887777 4465566777788888887774 2 23 3466777777777777777665555555555  


Q ss_pred             CCCCCCcEEEccCCCCCccC-CcccCCCCCCcEEEccCCccc
Q 047139          230 INSSSLARLELGYNQLTGNL-PISLGYLKNLRYLELWYNSFL  270 (611)
Q Consensus       230 ~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  270 (611)
                          +|++|++++|+++... ...+..+++|++|++++|+++
T Consensus        88 ----~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 ----DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ----TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ----ccccceeccccccccccccccccccccchhhcCCCccc
Confidence                6777777777665321 134555666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1.4e-13  Score=137.32  Aligned_cols=84  Identities=19%  Similarity=0.266  Sum_probs=39.7

Q ss_pred             CCCCcEEEccCCccccc----CCCCccCcccCceEEecCCccccC-----CCcCCCCCCCCCEEEccCCccccccC---h
Q 047139          256 LKNLRYLELWYNSFLGS----IPPSLGNLTFLEELYLTSNQMNGK-----FPESFGQLSAIRVLELSDNQWEGFIT---D  323 (611)
Q Consensus       256 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~---~  323 (611)
                      .+.|+.+++++|.+...    +...+...+.|++|++++|.+...     +...+..+++|+.|++++|.++....   .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            44556666666554422    112233445566666666655421     22234455566666666665543211   1


Q ss_pred             hhhcCCCCCCEEEcCc
Q 047139          324 AHLRNLTSLEELSLIK  339 (611)
Q Consensus       324 ~~l~~l~~L~~L~l~~  339 (611)
                      ..+..+++|++|++++
T Consensus       237 ~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         237 IALKSWPNLRELGLND  252 (344)
T ss_dssp             HHGGGCTTCCEEECTT
T ss_pred             ccccccccchhhhhhc
Confidence            1334445555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.1e-11  Score=104.71  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=95.0

Q ss_pred             cccCCCCeeecccccchhccCCCCeEECcCCC-CCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          459 DLDISFNSINGSIPQSVGNLKQLLTLVISNNN-LSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       459 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      .++.+++.+. ..|..+..+++|++|++++|+ ++.+..        ..+..+++|+.|++++|+|+...|..|..+++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~--------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLEL--------RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECG--------GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCc--------hhhccccccCcceeeccccCCcccccccccccc
Confidence            3455777776 567778888899999997654 664333        345558899999999999997778889999999


Q ss_pred             CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCccCCCccccccC
Q 047139          538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLLGPIPYCVGDFS  608 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~  608 (611)
                      ++|+|++|+|+ .+|...+. ...|+.|+|++|++...- ..++..+.......+..+++.-.-|..++.++
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             cceeccCCCCc-ccChhhhc-cccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            99999999998 77777776 557999999999886321 11122222223333444555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=3.2e-13  Score=122.70  Aligned_cols=118  Identities=21%  Similarity=0.289  Sum_probs=73.8

Q ss_pred             CcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139          458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM  537 (611)
Q Consensus       458 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  537 (611)
                      ++|++++|+++. ++ .+..+++|++|++++|++++         +|.....+++|++|++++|+++. + ..+..+++|
T Consensus        51 ~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~---------i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L  117 (198)
T d1m9la_          51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK---------IENLDAVADTLEELWISYNQIAS-L-SGIEKLVNL  117 (198)
T ss_dssp             CEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS---------CSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHS
T ss_pred             ceeECcccCCCC-cc-cccCCccccChhhccccccc---------ccccccccccccccccccccccc-c-ccccccccc
Confidence            455557777763 33 46777777777777777653         33333334567777777777763 2 246667777


Q ss_pred             CEEECCCCcCcccCh--hHHhhcCCCCcEEECcCCcCcccCCcc----------ccCCCCCCEee
Q 047139          538 DSLDLGENQLSGNIP--AWIGESMPSLSILRLRSNHFNGTIPSE----------LCKLSALHILD  590 (611)
Q Consensus       538 ~~L~Ls~N~l~~~ip--~~l~~~l~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~L~  590 (611)
                      +.|++++|+++ .++  ..+. .+++|+.|++++|++....+..          +..+++|+.||
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhc-ccccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77777777776 333  2343 3777777777777776544332          44567777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.1e-11  Score=102.75  Aligned_cols=107  Identities=21%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             CCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139          156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL  235 (611)
Q Consensus       156 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L  235 (611)
                      ...++.+++.+. ..|..+..+++|++|++++|+.++..-+..|.++++|++|++++|+++...+.+|..++      +|
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~------~L   82 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP------RL   82 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS------CC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc------cc
Confidence            344555555555 44555666666666666544323333344566666666666666666666666666665      66


Q ss_pred             cEEEccCCCCCccCCcccCCCCCCcEEEccCCccc
Q 047139          236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL  270 (611)
Q Consensus       236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  270 (611)
                      ++|+|++|+++ .+|.......+|++|+|++|++.
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            66666666666 33433333345777777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=5.5e-13  Score=121.11  Aligned_cols=129  Identities=23%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC
Q 047139          197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS  276 (611)
Q Consensus       197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  276 (611)
                      ..+..+++|++|++++|.++.. + .+..++      +|++|++++|.++ .+|.....+++|++|++++|.++. ++ .
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~------~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~  110 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGME------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G  110 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHT------TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-H
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCc------cccChhhcccccc-cccccccccccccccccccccccc-cc-c
Confidence            3444455555555555554432 1 233333      5555555555554 333333334456666666666653 22 2


Q ss_pred             ccCcccCceEEecCCccccCC-CcCCCCCCCCCEEEccCCccccccCh---------hhhcCCCCCCEEE
Q 047139          277 LGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGFITD---------AHLRNLTSLEELS  336 (611)
Q Consensus       277 l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---------~~l~~l~~L~~L~  336 (611)
                      +..+++|++|++++|+++... ...+..+++|+.|++++|++....+.         ..+..+++|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            556666777777766665321 13456667777777777766543322         1245667777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.1e-08  Score=87.06  Aligned_cols=80  Identities=23%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             CcCCCCEEECcCCccccc--CcccccCCCCCCEEECCCCcCcccChh-HHhhcCCCCcEEECcCCcCcccCCcc------
Q 047139          509 SLLTIRFLVLSNNHLSGE--IPPSLKNCSLMDSLDLGENQLSGNIPA-WIGESMPSLSILRLRSNHFNGTIPSE------  579 (611)
Q Consensus       509 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~~l~~L~~L~ls~n~l~~~~p~~------  579 (611)
                      .+++|++|+|++|+|+..  ++..+..+++|+.|++++|+|+ .+++ .... ...|+.|++++|++.+.....      
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhh-ccccceeecCCCCcCcCcccchhHHHH
Confidence            355555555555555532  2234455666666666666665 3333 2222 345666666666665443321      


Q ss_pred             -ccCCCCCCEee
Q 047139          580 -LCKLSALHILD  590 (611)
Q Consensus       580 -l~~l~~L~~L~  590 (611)
                       +..+++|++||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             34456666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.1e-08  Score=84.50  Aligned_cols=91  Identities=26%  Similarity=0.307  Sum_probs=69.1

Q ss_pred             ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139          470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      .++..+..++.|++|+|++|+|++++      .++..+..+++|+.|+|++|.++...+........|+.|++++|.+++
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~------~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCS------GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCc------hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            44555567999999999999998765      344556678999999999999995444344455679999999999986


Q ss_pred             cChh------HHhhcCCCCcEEE
Q 047139          550 NIPA------WIGESMPSLSILR  566 (611)
Q Consensus       550 ~ip~------~l~~~l~~L~~L~  566 (611)
                      ....      .+.+.+|+|+.||
T Consensus       130 ~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         130 TFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcccchhHHHHHHHHCCCCCEEC
Confidence            5432      3445689999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=1.8e-06  Score=74.86  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             ccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCCcCcccC
Q 047139          477 NLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSGNI  551 (611)
Q Consensus       477 ~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~i  551 (611)
                      +.+.|++|+|+++ .+++   ..+. .+-..+...+.|++|+|++|.+...    +...+...+.|+.|+|++|.+++..
T Consensus        13 n~~~L~~L~L~~~~~i~~---~~~~-~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSK---ERIR-SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             TCSSCCEEECTTCCSSCH---HHHH-HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             CCCCCcEEEeCCCCCCCH---HHHH-HHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            3466777777653 2321   1111 1223444556677777777766532    2234555667777777777776544


Q ss_pred             hhHHhhc---CCCCcEEECcCCcCccc-------CCccccCCCCCCEeeccCCc
Q 047139          552 PAWIGES---MPSLSILRLRSNHFNGT-------IPSELCKLSALHILDLSHNN  595 (611)
Q Consensus       552 p~~l~~~---l~~L~~L~ls~n~l~~~-------~p~~l~~l~~L~~L~ls~n~  595 (611)
                      ...++..   .++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            4433322   35677777777654421       23344455677777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=1.3e-05  Score=69.17  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             CcccCCCC-eeecc----cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139          458 RDLDISFN-SINGS----IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP  528 (611)
Q Consensus       458 ~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p  528 (611)
                      ++|+|+++ .++..    +...+...+.|++|++++|.+.+-...    .+.+.+...+.|++|+|++|.+++.    +-
T Consensus        18 ~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~----~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          18 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR----GLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT----THHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             cEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH----HHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            44444653 34332    334566778899999999987642222    2334455578999999999999853    33


Q ss_pred             ccccCCCCCCEEECCCCcCccc-------ChhHHhhcCCCCcEEECcCCcCc
Q 047139          529 PSLKNCSLMDSLDLGENQLSGN-------IPAWIGESMPSLSILRLRSNHFN  573 (611)
Q Consensus       529 ~~l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~~l~~L~~L~ls~n~l~  573 (611)
                      ..+...++|++|++++|++...       +...+.. .++|+.|+++.+...
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~-n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASME  144 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCHH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHh-CCCccEeeCcCCCch
Confidence            4677889999999999875521       2333333 789999999877543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=1.2e-05  Score=69.35  Aligned_cols=118  Identities=20%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             hhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCCcCcc
Q 047139          475 VGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSG  549 (611)
Q Consensus       475 l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  549 (611)
                      ..+.++|++|+++++ .+++-...    .+-..+...+.|++|++++|.++..    +...+...++++.+++++|.+++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~----~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLK----ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHH----HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHH----HHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            345677888888763 34321111    2333445577788888888877643    33455667788888888888765


Q ss_pred             cChhHHhh---cCCCCcEEEC--cCCcCcc----cCCccccCCCCCCEeeccCCcC
Q 047139          550 NIPAWIGE---SMPSLSILRL--RSNHFNG----TIPSELCKLSALHILDLSHNNL  596 (611)
Q Consensus       550 ~ip~~l~~---~l~~L~~L~l--s~n~l~~----~~p~~l~~l~~L~~L~ls~n~l  596 (611)
                      ..-..+..   ..++|+.++|  ++|++..    .+.+.+...+.|+.|+++.++.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            44333322   2577776555  4556643    2444555677888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.00013  Score=62.45  Aligned_cols=18  Identities=11%  Similarity=0.067  Sum_probs=8.7

Q ss_pred             CCCCCCCCEEEcccccCC
Q 047139          199 LGTLCNLQTLKLSLNQFS  216 (611)
Q Consensus       199 l~~l~~L~~L~l~~n~l~  216 (611)
                      +...++|++|++++|.++
T Consensus        42 l~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HhcCCccCeeeccCCccc
Confidence            334445555555555444