Citrus Sinensis ID: 047152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
Protein Sequence
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEccccccEEcccHHccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHcccccccccccEEEccccccEEEcccccccccccEEEcccccccccccccccccccccEEEcccccccEEccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccccccccHHHHHcccccEEEccccccEEEcccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEcccccccEEccccccccccccccHHccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccEEEEEEccccccccccccccccHHHccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccHHHccccccEEEEEccccccccccccHHHcccccccEEEEccccccccccHHHHcHccccccEEEEcccccccccccHHHcccccccEEEEEEccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccHHHHHcccccEEEEEccccccccccHHHHHcccccEEEEccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHccccEEEcccccEEccccHHHHHcccccEEEEEEccEEccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSSKWFLLLQYIAFCSVIlfqpqprvviadsnktrcIDEEREALLTFKASLVdesgilsswrredekrdcckwtgvgcskrtghvnkldlqpigfdsfplrgkitpALLKLQHLtyldlsrnnfsgssipEFLGslgklsylglssaefagpiphqlgnlsrlqfldlsfnnlfsgenldWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHslttlslyscdlppiipssllnlnssnslevidltennltnsvypWLFNVSSSlvdrislpsnqlqgsipeAFGRMVSLRYLdlssnelrgIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLssgctknslewLHLSsneitgsmpnlgefsslkqlnlennllngTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAldladnsltlefshdwippfqlntislghckmgprfpkwlqtqntvpnwfwDLTHQRMLLNLssnqmrgkvpdlslrfdisgpgidissnhfegpipplpsnatslnlsknkfsGSISFLCSLSNRLIYLDLsnnllsgklpdcwfqFDSLVILNLAnnnffgkipnsmgflhnirslslynrsqyeYKSTLGLVKILDlssnklgggvpkEIMDLVGLVALnlsrnnltgqitpkigqlksldfldlsrnqffggipsslsqlsglsvmdlsynnlsgkiplgtqlqsfnelvyagnpelcglplrnkcpdedsapsperddantpegedqlITFGFYVSVILGFFIGFWGVCGTLL
Flexible Loop (DISEMBL)
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLtfkaslvdesgilsswrredekrdcckwtgvgcskrtghvnkldlqpiGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Low Complexity Region (SEG)
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFlgslgklsylglssAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWlshlssliylyldlndlsnfsNWVQllsklhslttlslysCDlppiipssllnlnssnslEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQlnlennllnGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Disordered region (IsUnstruct)
***KWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSS******VPDLSLRFDISG**I**************************KFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL*************************QLITFGFYVSVILGFFIGFWGVCGT**
Disordered Region (DISOPRED)
***KWFLLLQYIAFCSVILFQPQPRVV************EREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGL****************************LITFGFYVSVILGFFIGFWGVCGTLL
Disordered Region (DISEMBL)
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCP****************EGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Disordered Region (DISPRO)
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKC***************TPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	776	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.929	0.851	0.294	4e-57
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.868	0.611	0.311	2e-55
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.751	0.466	0.330	5e-55
Q9FL28	1173	LRR receptor-like serine/	no	no	0.778	0.514	0.317	1e-54
Q9LP24	1120	Probable leucine-rich rep	no	no	0.766	0.531	0.330	2e-53
O49318	1124	Probable leucine-rich rep	no	no	0.810	0.559	0.290	3e-53
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.894	0.630	0.305	5e-53
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.814	0.604	0.295	7e-52
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.770	0.532	0.311	3e-51
P93194	1109	Receptor-like protein kin	N/A	no	0.770	0.539	0.317	2e-50

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 252/857 (29%), Positives = 383/857 (44%), Gaps = 136/857 (15%)

Query: 4   KWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESG--ILSSW 61
            W    + I F S+++        +A S+   C D++R+ALL F+      +   I++ W
Sbjct: 8   HWVFSSRIIIFLSLLVHS------LASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 62  RRE-DEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLS 120
           R   ++  DCC W GV C+ ++G V  LD+     +++    K   +L KLQ+L +LDL+
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYL---KTNSSLFKLQYLRHLDLT 118

Query: 121 RNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLD 180
             N  G  IP  LG+L  L+ + L   +F G IP  +GNL++L+ L L+ NN+ +GE   
Sbjct: 119 NCNLYGE-IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILA-NNVLTGEIPS 176

Query: 181 WLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNS 240
            L +LS L+ L L  N L         +  L  L  LSL S +L   IPSSL NL  SN 
Sbjct: 177 SLGNLSRLVNLELFSNRL--VGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNL--SNL 232

Query: 241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
           + ++ LT N L   V   + N+    V  +S  +N L G+IP +F  +  L    LSSN 
Sbjct: 233 VHLV-LTHNQLVGEVPASIGNLIELRV--MSFENNSLSGNIPISFANLTKLSIFVLSSNN 289

Query: 301 LRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM- 358
                 F +     L+   +S     G   + +  + S      LE ++L  N+ TG + 
Sbjct: 290 FTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPS------LESIYLQENQFTGPIE 343

Query: 359 -PNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLA 417
             N    + L+ L L  N L+G I +SI +L  LE L ++ N+  G I   + S L  L 
Sbjct: 344 FANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTI-SKLVNLL 402

Query: 418 ALDLADNSLTLEFSHDWIPP--FQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQR 475
            LDL+ N+L  E     +P   ++LNT+ L H      F    Q +  +           
Sbjct: 403 HLDLSKNNLEGE-----VPACLWRLNTMVLSHNSFS-SFENTSQEEALIEE--------- 447

Query: 476 MLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT----SLNLSKNKF 531
             L+L+SN  +G +P +  +    G  +D+S+N F G IP    N +     LNL  N F
Sbjct: 448 --LDLNSNSFQGPIPYMICKLSSLG-FLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNF 504

Query: 532 SGSISFLCSLSNRLIYLDLSNNLLSGKLP----DC-------------------WFQ-FD 567
           SG++  + S +  L+ LD+S+N L GK P    +C                   W +   
Sbjct: 505 SGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLP 564

Query: 568 SLVILNLANNNFFGKIPN---SMGFL--------HNIRSLSL------------------ 598
           SL +LNL +N F+G + +   S+GF         HN  S +L                  
Sbjct: 565 SLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEM 624

Query: 599 ------YNRSQYEYKSTLGLV---------------KILDLSSNKLGGGVPKEIMDLVGL 637
                 + R    Y   + +V               + +D S NK+ G +P+ +  L  L
Sbjct: 625 DQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKEL 684

Query: 638 VALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
             LNLS N  T  I   +  L  L+ LD+SRN+  G IP  L+ LS LS M+ S+N L G
Sbjct: 685 RVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQG 744

Query: 698 KIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLI----- 752
            +P GTQ Q      +  NP L G  L + C D  +     +   +  E E+ +      
Sbjct: 745 PVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAA 802

Query: 753 TFGFYVSVILGFFIGFW 769
              +   V+ G  IG +
Sbjct: 803 AIAYGPGVLCGLVIGHF 819

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 228/732 (31%), Positives = 346/732 (47%), Gaps = 58/732 (7%)

Query: 33  KTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQP 92
           +T  ++ E + LL  K+  VD    L +W   D     C WTGV CS  +     L L  
Sbjct: 23  ETTGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLN- 79

Query: 93  IGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP 152
               S  L GK++P++  L HL  LDLS N  SG  IP+ +G+   L  L L++ +F G 
Sbjct: 80  --LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNNQFDGE 136

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           IP ++G L  L+ L + +NN  SG     + +L SL  L    N++S      QL   + 
Sbjct: 137 IPVEIGKLVSLENL-IIYNNRISGSLPVEIGNLLSLSQLVTYSNNISG-----QLPRSIG 190

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           +L  L+ +      I  S    +    SL ++ L +N L+  + P    +   L  ++ L
Sbjct: 191 NLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGEL-PKEIGMLKKL-SQVIL 248

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEF 331
             N+  G IP       SL  L L  N+L G IPK LG++  L+ LYL    L G +   
Sbjct: 249 WENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPRE 308

Query: 332 IQDLSSGC----TKNSL--------------EWLHLSSNEITGSMP-NLGEFSSLKQLNL 372
           I +LS       ++N+L              E L+L  N++TG++P  L    +L +L+L
Sbjct: 309 IGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDL 368

Query: 373 ENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSH 432
             N L G I      L  L ML+L  NSL G I   L    S L  LD++DN L+     
Sbjct: 369 SINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL-GWYSDLWVLDMSDNHLSGRIPS 427

Query: 433 DWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDL 492
                  +  ++LG   +    P  + T  T+           + L L+ N + G+ P  
Sbjct: 428 YLCLHSNMIILNLGTNNLSGNIPTGITTCKTL-----------VQLRLARNNLVGRFPS- 475

Query: 493 SLRFDISGPGIDISSNHFEGPIPPLPSNATSLN---LSKNKFSGSISFLCSLSNRLIYLD 549
           +L   ++   I++  N F G IP    N ++L    L+ N F+G +     + ++L  L+
Sbjct: 476 NLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLN 535

Query: 550 LSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK-- 607
           +S+N L+G++P   F    L  L++  NNF G +P+ +G L+ +  L L N +       
Sbjct: 536 ISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPV 595

Query: 608 --STLGLVKILDLSSNKLGGGVPKEIMDLVGL-VALNLSRNNLTGQITPKIGQLKSLDFL 664
               L  +  L +  N   G +P+E+  L GL +ALNLS N LTG+I P++  L  L+FL
Sbjct: 596 ALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFL 655

Query: 665 DLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724
            L+ N   G IPSS + LS L   + SYN+L+G IPL   L++ +   + GN  LCG PL
Sbjct: 656 LLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPL 712

Query: 725 RNKCPDEDSAPS 736
                 +  APS
Sbjct: 713 NQCIQTQPFAPS 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  216 bits (550), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 224/678 (33%), Positives = 317/678 (46%), Gaps = 95/678 (14%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
           L G I   L +L++L  L+L+ N+ +G  IP  LG + +L YL L + +  G IP  L +
Sbjct: 227 LNGTIPAELGRLENLEILNLANNSLTGE-IPSQLGEMSQLQYLSLMANQLQGLIPKSLAD 285

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLS---------NFSNWVQL--- 207
           L  LQ LDLS NNL +GE  +   ++S L+ L L  N LS         N +N  QL   
Sbjct: 286 LGNLQTLDLSANNL-TGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLS 344

Query: 208 -----------LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL--TENNLTNS 254
                      LSK  SL  L L +  L   IP +L  L     +E+ DL    N L  +
Sbjct: 345 GTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFEL-----VELTDLYLHNNTLEGT 399

Query: 255 VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCG 313
           + P + N+++  +  + L  N L+G +P+    +  L  L L  N   G IP+ +GN   
Sbjct: 400 LSPSISNLTN--LQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTS 457

Query: 314 LKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNL 372
           LK++ + G   +G++   I  L        L  LHL  NE+ G +P +LG    L  L+L
Sbjct: 458 LKMIDMFGNHFEGEIPPSIGRLKE------LNLLHLRQNELVGGLPASLGNCHQLNILDL 511

Query: 373 ENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT----- 427
            +N L+G+I  S G L  LE L L  NSL G + ++L S L  L  ++L+ N L      
Sbjct: 512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLIS-LRNLTRINLSHNRLNGTIHP 570

Query: 428 -------LEFS------HDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQ 474
                  L F        D IP    N+ +L   ++G       Q    +P W      +
Sbjct: 571 LCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKN-----QLTGKIP-WTLGKIRE 624

Query: 475 RMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP---SNATSLNLSKNKF 531
             LL++SSN + G +P L L        ID+++N   GPIPP     S    L LS N+F
Sbjct: 625 LSLLDMSSNALTGTIP-LQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQF 683

Query: 532 SGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLH 591
             S+        +L+ L L  N L+G +P       +L +LNL  N F G +P +MG L 
Sbjct: 684 VESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLS 743

Query: 592 NIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGL-VALNLSRNNLTGQ 650
            +          YE          L LS N L G +P EI  L  L  AL+LS NN TG 
Sbjct: 744 KL----------YE----------LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query: 651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNE 710
           I   IG L  L+ LDLS NQ  G +P S+  +  L  +++S+NNL GK  L  Q   +  
Sbjct: 784 IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK--LKKQFSRWPA 841

Query: 711 LVYAGNPELCGLPLRNKC 728
             + GN  LCG PL ++C
Sbjct: 842 DSFLGNTGLCGSPL-SRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  215 bits (548), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 224/706 (31%), Positives = 332/706 (47%), Gaps = 102/706 (14%)

Query: 3   SKWFLLLQYIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLV-DESGILSSW 61
           SK FL+L    F   I    Q              + E EAL +FK  +  D  G+LS W
Sbjct: 5   SKTFLILTLTFFFFGIALAKQ------------SFEPEIEALKSFKNGISNDPLGVLSDW 52

Query: 62  RREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSR 121
                 R C  WTG+ C   TGHV  + L         L G ++PA+  L +L  LDL+ 
Sbjct: 53  TIIGSLRHC-NWTGITCDS-TGHVVSVSLL-----EKQLEGVLSPAIANLTYLQVLDLTS 105

Query: 122 NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDW 181
           N+F+G  IP  +G L +L+ L L    F+G IP  +  L  + +LDL  NNL SG+  + 
Sbjct: 106 NSFTGK-IPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLR-NNLLSGDVPEE 163

Query: 182 LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSL 241
           +   SSL+ +  D N+L+                            IP  L +L     L
Sbjct: 164 ICKTSSLVLIGFDYNNLTG--------------------------KIPECLGDLVH---L 194

Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
           ++     N+LT S+ P      ++L D + L  NQL G IP  FG +++L+ L L+ N L
Sbjct: 195 QMFVAAGNHLTGSI-PVSIGTLANLTD-LDLSGNQLTGKIPRDFGNLLNLQSLVLTENLL 252

Query: 302 RG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
            G IP  +GN   L  L L   +L G++   + +L        L+ L +  N++T S+P+
Sbjct: 253 EGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQ------LQALRIYKNKLTSSIPS 306

Query: 361 -LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
            L   + L  L L  N L G I + IG L  LE+L L+ N+  G   +++ +NL  L  L
Sbjct: 307 SLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVL 365

Query: 420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKM--GPRFPKWLQTQNTVPNWFWDLTHQRML 477
            +  N+++ E   D      L  +S  H  +  GP           +P+   + T  + L
Sbjct: 366 TVGFNNISGELPADLGLLTNLRNLS-AHDNLLTGP-----------IPSSISNCTGLK-L 412

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP---SNATSLNLSKNKFSGS 534
           L+LS NQM G++P    R +++   I I  NHF G IP      SN  +L+++ N  +G+
Sbjct: 413 LDLSHNQMTGEIPRGFGRMNLTF--ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGT 470

Query: 535 ISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
           +  L     +L  L +S N L+G +P        L IL L +N F G+IP  M       
Sbjct: 471 LKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREM------- 523

Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
                        S L L++ L + SN L G +P+E+ D+  L  L+LS N  +GQI   
Sbjct: 524 -------------SNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPAL 570

Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
             +L+SL +L L  N+F G IP+SL  LS L+  D+S N L+G IP
Sbjct: 571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIP 616

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 225/681 (33%), Positives = 316/681 (46%), Gaps = 86/681 (12%)

Query: 40  EREALLTFKASLVDESGILSSWRREDEKR---DCCKWTGVGCSKRTGHVNKLDLQPIG-- 94
           E  ALL +K++  + S  LSSW  +        C  W GV C+ R G + +L+L   G  
Sbjct: 33  EANALLKWKSTFTNSSK-LSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGIE 90

Query: 95  --FDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP 152
             F  FP         + L +L Y+DLS N  SG+                         
Sbjct: 91  GTFQDFPF--------ISLSNLAYVDLSMNLLSGT------------------------- 117

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           IP Q GNLS+L + DLS N+L +GE    L +L +L  LYL  N L+  S     L  + 
Sbjct: 118 IPPQFGNLSKLIYFDLSTNHL-TGEISPSLGNLKNLTVLYLHQNYLT--SVIPSELGNME 174

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           S+T L+L    L   IPSSL NL +   L V+ L EN LT  + P L N+ S  +  ++L
Sbjct: 175 SMTDLALSQNKLTGSIPSSLGNLKN---LMVLYLYENYLTGVIPPELGNMES--MTDLAL 229

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEF 331
             N+L GSIP   G + +L  L L  N L G IP  +GNM  +  L LS  +L G +   
Sbjct: 230 SQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSS 289

Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
           + +L +      L  L L  N +TG +P  LG   S+  L L NN L G+I  S+G L  
Sbjct: 290 LGNLKN------LTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKN 343

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
           L +L L  N L GVI   L  N+  +  L L +N LT       IP       S G+ K 
Sbjct: 344 LTILYLYENYLTGVIPPEL-GNMESMIDLQLNNNKLT-----GSIPS------SFGNLKN 391

Query: 451 GPRFPKWLQTQ-NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNH 509
                 +L      +P    ++    + L+LS N++ G VPD    F      + +  NH
Sbjct: 392 LTYLYLYLNYLTGVIPQELGNM-ESMINLDLSQNKLTGSVPDSFGNF-TKLESLYLRVNH 449

Query: 510 FEGPIPPLPSNA---TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF 566
             G IPP  +N+   T+L L  N F+G          +L  + L  N L G +P      
Sbjct: 450 LSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDC 509

Query: 567 DSLVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNR------SQYEYKSTLGLVKILDLS 619
            SL+      N F G I  + G   ++  +   +N+      S +E    LG    L +S
Sbjct: 510 KSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLG---ALIMS 566

Query: 620 SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
           +N + G +P EI ++  LV L+LS NNL G++   IG L +L  L L+ NQ  G +P+ L
Sbjct: 567 NNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGL 626

Query: 680 SQLSGLSVMDLSYNNLSGKIP 700
           S L+ L  +DLS NN S +IP
Sbjct: 627 SFLTNLESLDLSSNNFSSEIP 647

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 213/733 (29%), Positives = 339/733 (46%), Gaps = 104/733 (14%)

Query: 58  LSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFD--SFPLRGKITPALLKLQHLT 115
           L +W   DE    C W GV CS +    +   L     D  S  L G ++P++  L +L 
Sbjct: 55  LHNWNGIDETP--CNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLV 112

Query: 116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFS 175
           YL+L+ N  +G  IP  +G+  KL  + L++ +F G IP ++  LS+L+  ++  NN  S
Sbjct: 113 YLNLAYNALTGD-IPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNIC-NNKLS 170

Query: 176 GENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNL 235
           G              L  ++ DL N    V              Y+ +L   +P SL NL
Sbjct: 171 GP-------------LPEEIGDLYNLEELVA-------------YTNNLTGPLPRSLGNL 204

Query: 236 NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLD 295
           N    L      +N+ + ++   +    +  +  + L  N + G +P+  G +V L+ + 
Sbjct: 205 NK---LTTFRAGQNDFSGNIPTEIGKCLN--LKLLGLAQNFISGELPKEIGMLVKLQEVI 259

Query: 296 LSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI 354
           L  N+  G IPK +GN+  L+ L L G  L G +   I ++ S      L+ L+L  N++
Sbjct: 260 LWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKS------LKKLYLYQNQL 313

Query: 355 TGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
            G++P  LG+ S + +++   NLL+G I   + ++ +L +L L  N L G+I   L S L
Sbjct: 314 NGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNEL-SKL 372

Query: 414 SRLAALDLADNSLTLEFSHDWIPP-FQ----LNTISLGHCKMGPRFPKWLQTQNTVPNWF 468
             LA LDL+ NSLT       IPP FQ    +  + L H  +    P+ L   +  P W 
Sbjct: 373 RNLAKLDLSINSLT-----GPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYS--PLWV 425

Query: 469 WDLTHQRM---------------LLNLSSNQMRGKVPDLSLRFD---------------- 497
            D +  ++               LLNL SN++ G +P   LR                  
Sbjct: 426 VDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQF 485

Query: 498 -------ISGPGIDISSNHFEGPIPPLPSNATSL---NLSKNKFSGSISFLCSLSNRLIY 547
                  ++   I++  N F GP+PP       L   +L+ N+FS ++    S  + L+ 
Sbjct: 486 PTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVT 545

Query: 548 LDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNRSQYEY 606
            ++S+N L+G +P        L  L+L+ N+F G +P  +G LH +  L L  NR     
Sbjct: 546 FNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNI 605

Query: 607 KSTLG---LVKILDLSSNKLGGGVPKEIMDLVGL-VALNLSRNNLTGQITPKIGQLKSLD 662
             T+G    +  L +  N   G +P ++  L  L +A+NLS N+ +G+I P+IG L  L 
Sbjct: 606 PFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLM 665

Query: 663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGL 722
           +L L+ N   G IP++   LS L   + SYNNL+G++P     Q+     + GN  LCG 
Sbjct: 666 YLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG 725

Query: 723 PLRNKCPDEDSAP 735
            LR+  P   S P
Sbjct: 726 HLRSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  209 bits (533), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 240/786 (30%), Positives = 354/786 (45%), Gaps = 92/786 (11%)

Query: 34  TRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSK-RTGHVNKLDLQP 92
            R ++EE   LL FKA L D +G L+SW + D   + C WTG+ C+  RT  V  +DL  
Sbjct: 21  VRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTHLRT--VTSVDL-- 74

Query: 93  IGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP 152
              +   L G ++P + KL  L  L++S N  SG  IP+ L     L  L L +  F G 
Sbjct: 75  ---NGMNLSGTLSPLICKLHGLRKLNVSTNFISGP-IPQDLSLCRSLEVLDLCTNRFHGV 130

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           IP QL  +  L+ L L  N LF G     + +LSSL  L +  N+L+        ++KL 
Sbjct: 131 IPIQLTMIITLKKLYLCENYLF-GSIPRQIGNLSSLQELVIYSNNLTGV--IPPSMAKLR 187

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
            L  +         +IPS +   +   SL+V+ L EN L  S+ P       +L D I L
Sbjct: 188 QLRIIRAGRNGFSGVIPSEI---SGCESLKVLGLAENLLEGSL-PKQLEKLQNLTDLI-L 242

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEF 331
             N+L G IP + G +  L  L L  N   G IP+ +G +  +K LYL   +L G++   
Sbjct: 243 WQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPRE 302

Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
           I +L           +  S N++TG +P   G   +LK L+L  N+L G I + +G+L  
Sbjct: 303 IGNLIDAAE------IDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTL 356

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP---FQLNTISLGH 447
           LE L L+ N L G I + L   L  L  L L DN L        IPP   F  N   L  
Sbjct: 357 LEKLDLSINRLNGTIPQEL-QFLPYLVDLQLFDNQL-----EGKIPPLIGFYSNFSVLDM 410

Query: 448 CKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISS 507
                  P        +P  F       +LL+L SN++ G +P   L+   S   + +  
Sbjct: 411 SANSLSGP--------IPAHFCRF-QTLILLSLGSNKLSGNIPR-DLKTCKSLTKLMLGD 460

Query: 508 NHFEGPIPPLP---SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF 564
           N   G +P       N T+L L +N  SG+IS        L  L L+NN  +G++P    
Sbjct: 461 NQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIG 520

Query: 565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKST----LGLVKILDLSS 620
               +V  N+++N   G IP  +G    I+ L L       Y +     L  ++IL LS 
Sbjct: 521 NLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSD 580

Query: 621 NKLGGGVPKEIMDLVGL-------------------------VALNLSRNNLTGQITPKI 655
           N+L G +P    DL  L                         ++LN+S NNL+G I   +
Sbjct: 581 NRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSL 640

Query: 656 GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAG 715
           G L+ L+ L L+ N+  G IP+S+  L  L + ++S NNL G +P     Q  +   +AG
Sbjct: 641 GNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAG 700

Query: 716 NPELCGLPLRNKC----PDEDSAPSPERDDANTPEGEDQLITFGFYVSVILG--FFIGFW 769
           N  LC    R+ C    P  DS  +   + +       +++T      +++G  F I F 
Sbjct: 701 NHGLCN-SQRSHCQPLVPHSDSKLNWLINGSQ----RQKILTI---TCIVIGSVFLITFL 752

Query: 770 GVCGTL 775
           G+C T+
Sbjct: 753 GLCWTI 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  206 bits (523), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 211/713 (29%), Positives = 322/713 (45%), Gaps = 81/713 (11%)

Query: 26  VVIADSNKTRCIDEEREALLTFKASLVDE--SGILSSWRREDEKRDCCKWTGVGCSKRTG 83
           +V++ S       EE  ALL +K++  ++  S  LSSW   +    C  W GV CS   G
Sbjct: 36  IVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACS--LG 93

Query: 84  HVNKLDLQPIG----FDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKL 139
            + +L+L   G    F+ FP           L +LT++DLS N FSG+  P   G   KL
Sbjct: 94  SIIRLNLTNTGIEGTFEDFPFSS--------LPNLTFVDLSMNRFSGTISP-LWGRFSKL 144

Query: 140 SYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLS 199
            Y  LS  +  G IP +LG+LS L  L L  N L                          
Sbjct: 145 EYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNG------------------------ 180

Query: 200 NFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWL 259
              +    + +L  +T +++Y   L   IPSS  NL     L  + L  N+L+ S+   +
Sbjct: 181 ---SIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTK---LVNLYLFINSLSGSIPSEI 234

Query: 260 FNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILY 318
            N+ +  +  + L  N L G IP +FG + ++  L++  N+L G IP  +GNM  L  L 
Sbjct: 235 GNLPN--LRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLS 292

Query: 319 LSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNLENNLL 377
           L   +L G +   + ++ +      L  LHL  N++ GS+P  LGE  S+  L +  N L
Sbjct: 293 LHTNKLTGPIPSTLGNIKT------LAVLHLYLNQLNGSIPPELGEMESMIDLEISENKL 346

Query: 378 NGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP 437
            G +  S G+L  LE L L  N L G I   + +N + L  L L  N+ T          
Sbjct: 347 TGPVPDSFGKLTALEWLFLRDNQLSGPIPPGI-ANSTELTVLQLDTNNFTGFLPDTICRG 405

Query: 438 FQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFD 497
            +L  ++L         PK L+   ++           + +    N   G   D+S  F 
Sbjct: 406 GKLENLTLDDNHFEGPVPKSLRDCKSL-----------IRVRFKGNSFSG---DISEAFG 451

Query: 498 ISGP--GIDISSNHFEGPIPP---LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSN 552
           +      ID+S+N+F G +           +  LS N  +G+I        +L  LDLS+
Sbjct: 452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511

Query: 553 NLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY-NRSQYEYKSTLG 611
           N ++G+LP+     + +  L L  N   GKIP+ +  L N+  L L  NR   E   TL 
Sbjct: 512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLN 571

Query: 612 ---LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSR 668
               +  ++LS N L   +P+ +  L  L  L+LS N L G+I+ +   L++L+ LDLS 
Sbjct: 572 NLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSH 631

Query: 669 NQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG 721
           N   G IP S   +  L+ +D+S+NNL G IP     ++     + GN +LCG
Sbjct: 632 NNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 216/694 (31%), Positives = 317/694 (45%), Gaps = 96/694 (13%)

Query: 57  ILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTY 116
           + S+W+    +   C W G+ C       +  ++  + F    + G++ P + +L+ L  
Sbjct: 50  VTSTWKINASEATPCNWFGITCD------DSKNVASLNFTRSRVSGQLGPEIGELKSLQI 103

Query: 117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSG 176
           LDLS NNFSG+ IP  LG+  KL+ L LS   F+  IP  L +L RL+ L L + N  +G
Sbjct: 104 LDLSTNNFSGT-IPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYL-YINFLTG 161

Query: 177 ENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLN 236
           E  + L  +  L  LYLD N+L+      Q +     L  LS+Y+      IP S+ N +
Sbjct: 162 ELPESLFRIPKLQVLYLDYNNLT--GPIPQSIGDAKELVELSMYANQFSGNIPESIGNSS 219

Query: 237 S-------------------------------SNSLE--------------VIDLTENNL 251
           S                               +NSL+               +DL+ N  
Sbjct: 220 SLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEF 279

Query: 252 TNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGN 310
              V P L N SS  +D + + S  L G+IP + G + +L  L+LS N L G IP  LGN
Sbjct: 280 EGGVPPALGNCSS--LDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGN 337

Query: 311 MCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQ 369
              L +L L+  +L G +   +  L        LE L L  N  +G +P  + +  SL Q
Sbjct: 338 CSSLNLLKLNDNQLVGGIPSALGKL------RKLESLELFENRFSGEIPIEIWKSQSLTQ 391

Query: 370 LNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE 429
           L +  N L G +   + ++ KL++  L  NS  G I   L  N S L  +D   N LT E
Sbjct: 392 LLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVN-SSLEEVDFIGNKLTGE 450

Query: 430 FSHDWIPPFQLNTI-------------SLGHCKMGPRFPKWLQTQNT---VPNWFWDLTH 473
              +     +L  +             S+GHCK   RF   L+  N    +P +  D  H
Sbjct: 451 IPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRF--ILRENNLSGLLPEFSQD--H 506

Query: 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL---NLSKNK 530
               L+ +SN   G +P  SL    +   I++S N F G IPP   N  +L   NLS+N 
Sbjct: 507 SLSFLDFNSNNFEGPIPG-SLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNL 565

Query: 531 FSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFL 590
             GS+    S    L   D+  N L+G +P  +  +  L  L L+ N F G IP  +  L
Sbjct: 566 LEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPEL 625

Query: 591 HNIRSLSL-YNRSQYEYKSTLGLVKIL----DLSSNKLGGGVPKEIMDLVGLVALNLSRN 645
             + +L +  N    E  S++GL++ L    DLS N L G +P ++ DL+ L  LN+S N
Sbjct: 626 KKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNN 685

Query: 646 NLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
           NLTG ++   G L SL  +D+S NQF G IP +L
Sbjct: 686 NLTGSLSVLKG-LTSLLHVDVSNNQFTGPIPDNL 718

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 224/705 (31%), Positives = 321/705 (45%), Gaps = 107/705 (15%)

Query: 55  SGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHL 114
           S I  SW   D     C W GV C +R   V+ L+L      S+ + G+  P +  L+HL
Sbjct: 43  SDITQSWNASDSTP--CSWLGVECDRRQ-FVDTLNLS-----SYGISGEFGPEISHLKHL 94

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF 174
             + LS N F GS IP  LG+   L ++ LSS  F G IP  LG L  L+ L L FN+L 
Sbjct: 95  KKVVLSGNGFFGS-IPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLI 153

Query: 175 SG--ENLDWLSHLSSLIYLYLDLNDL--SNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
               E+L  + HL ++ +    LN    SN  N       +  LTTL L        +PS
Sbjct: 154 GPFPESLLSIPHLETVYFTGNGLNGSIPSNIGN-------MSELTTLWLDDNQFSGPVPS 206

Query: 231 SLLN--------LNSSNSLEVIDLTENNLTNSVYPWLFN-----------VSSSLVDRIS 271
           SL N        LN +N +  + +T NNL N VY  + N           VS   +D IS
Sbjct: 207 SLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTIS 266

Query: 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSE 330
           L +NQ  G +P   G   SLR     S  L G IP   G +  L  LYL+G    G++  
Sbjct: 267 LSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPP 326

Query: 331 FIQDLSS----GCTKNSLE--------------WLHLSSNEITGSMP-NLGEFSSLKQLN 371
            +    S       +N LE              +LHL +N ++G +P ++ +  SL+ L 
Sbjct: 327 ELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQ 386

Query: 372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFS 431
           L  N L+G +   + +L +L  L L  N   GVI + L +N S L  LDL  N  T    
Sbjct: 387 LYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGAN-SSLEVLDLTRNMFTGHIP 445

Query: 432 HDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD 491
            +     +L  + LG+  +    P  L   +T+         +R++L    N +RG +PD
Sbjct: 446 PNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTL---------ERLIL--EENNLRGGLPD 494

Query: 492 LS-----LRFDISGPGIDISSNHFEGPIPPLP---SNATSLNLSKNKFSGSISFLCSLSN 543
                  L FD+SG       N+F GPIPP      N T++ LS N+ SGSI        
Sbjct: 495 FVEKQNLLFFDLSG-------NNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLV 547

Query: 544 RLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQ 603
           +L +L+LS+N+L G LP        L  L+ ++N   G IP+++G L  +  LSL     
Sbjct: 548 KLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSL----- 602

Query: 604 YEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF 663
                            N   GG+P  +     L+ L L  N L G I P +G L++L  
Sbjct: 603 ---------------GENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDI-PPVGALQALRS 646

Query: 664 LDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSF 708
           L+LS N+  G +P  L +L  L  +D+S+NNLSG + + + +QS 
Sbjct: 647 LNLSSNKLNGQLPIDLGKLKMLEELDVSHNNLSGTLRVLSTIQSL 691

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
359490572	975	PREDICTED: probable LRR receptor-like se	0.856	0.682	0.468	1e-159
224125666	938	predicted protein [Populus trichocarpa]	0.971	0.803	0.420	1e-157
225464712	1021	PREDICTED: receptor-like protein 12-like	0.826	0.627	0.465	1e-156
224105895	963	predicted protein [Populus trichocarpa]	0.872	0.703	0.468	1e-151
224105891	1036	predicted protein [Populus trichocarpa]	0.815	0.611	0.441	1e-139
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.820	0.655	0.432	1e-138
255570346	831	serine-threonine protein kinase, plant-t	0.936	0.874	0.398	1e-137
147834202	1270	hypothetical protein VITISV_011552 [Viti	0.914	0.559	0.408	1e-135
357487977	1005	Receptor protein kinase-like protein [Me	0.947	0.731	0.374	1e-132
357443689	1165	Receptor-like protein kinase [Medicago t	0.962	0.641	0.400	1e-131

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/752 (46%), Positives = 455/752 (60%), Gaps = 87/752 (11%)

Query: 26  VVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHV 85
           + + D+ K  CI+ ER+ALL FK  + D+ GILSSWR E  KRDCCKW GV CS +TGH+
Sbjct: 27  IQVGDA-KVGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHI 85

Query: 86  NKLDLQPIGF-DSFP-LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLG 143
             LDL    + D F  LRGKI+P+LL+LQ L +LDLS N+F G S+PEF+GSL K+ YL 
Sbjct: 86  TSLDLSAYEYKDEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLD 145

Query: 144 LSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN 203
           LSS   AGP+PHQLGNLS L FLDLS N+  S ENLDWLS LSSL +L L+  +LS    
Sbjct: 146 LSSTYLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIR 205

Query: 204 WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVS 263
           W   ++KL SL  L L SCDLP  I  SL  + SS SL V+DL+ N L+ S+YPWLFN +
Sbjct: 206 WADAINKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFN 265

Query: 264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-------------------- 303
           SSLV  + L  N LQ S P+AFG MVSL YLDLS N+L+G                    
Sbjct: 266 SSLV-HLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQL 324

Query: 304 ---IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS--------------------GCT 340
              IP   GNM  L+ + L+  +L+G++ +   +L +                     C 
Sbjct: 325 QGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNLLACA 384

Query: 341 KNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNS 400
            ++LE L LS N+  GS+P+L  FSSL +L+L +N LNGT+ +SI QL +LE+LK+  NS
Sbjct: 385 NDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNS 444

Query: 401 LGGVISEALFSNLSRLAALDLADNS-LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQ 459
           L G +SEA   +LS+L  LDL+ NS LTL  S DW+P FQL  I L  CK+GPRFP WL+
Sbjct: 445 LQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLR 504

Query: 460 TQ--------------NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDI 505
           TQ              + +PNWFW+ T     LN+S+NQ+ G VP+ S+ F    P +D+
Sbjct: 505 TQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFS-RFPQMDM 563

Query: 506 SSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRL-IYLDLSNNLLSGKLPDCWF 564
           SSN+FEG IP     A  L+LSKN FSGSIS LC++S     YLDLSNNLLSG+LP+CW 
Sbjct: 564 SSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWA 623

Query: 565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG 624
           Q++ LV+LNL NNNF GKI +S+G L  I SL L N                    NKL 
Sbjct: 624 QWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRN--------------------NKLT 663

Query: 625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ-LKSLDFLDLSRNQFFGGIPSSLSQLS 683
           G +P  + +   L  ++L RN L G I   IG+ L +L  L+L  N+F+G IP  + QL 
Sbjct: 664 GELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLK 723

Query: 684 GLSVMDLSYNNLSGKIPLGTQLQSFNELVYAG 715
            + ++DLS NN+SG IP      +F  +V  G
Sbjct: 724 KIQILDLSNNNISGMIP--RCFNNFTAMVQQG 753

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 379/901 (42%), Positives = 510/901 (56%), Gaps = 147/901 (16%)

Query: 12  IAFCSVILFQPQPRVV-IADSNKTRCIDEEREALLTFKASLVDESGILSSWRRED-EKRD 69
           +A     L Q +PR +  A+  + RCI+ ER+ALL+FK  L   SG+LSSW  E+ EK D
Sbjct: 9   VASTKEKLHQLRPRFISAAERAEFRCIERERQALLSFKQELEYPSGLLSSWGSEEGEKSD 68

Query: 70  CCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSI 129
           CCKW GVGC+ RTG +  LDL  +      + G IT +LL+LQHL YLDLS N+F G+  
Sbjct: 69  CCKWVGVGCNNRTGRITMLDLHGLA-----VGGNITDSLLELQHLNYLDLSDNSFYGNPF 123

Query: 130 PEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189
           P F+GSL KL YL LS+    G + +QLGNLS LQ LDLS+N   S E+LDWLS LS L 
Sbjct: 124 PSFVGSLRKLRYLSLSNNGLIGRLSYQLGNLSSLQSLDLSYNFDVSFESLDWLSRLSFLE 183

Query: 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTEN 249
           +L+L  N L+  S+W+Q+++KL  L  L L  C L  I+P +L  +NSS SL ++DL+ N
Sbjct: 184 HLHLTGNHLTQASDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFN 243

Query: 250 NLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR-GIPKFL 308
           +L++S+ PWL N S SLVD + L +NQLQGSIP+AFG+M SL  L L+ N+L  GIP+  
Sbjct: 244 HLSSSIVPWLSNSSDSLVD-LDLSANQLQGSIPDAFGKMTSLTNLHLADNQLEGGIPRSF 302

Query: 309 GNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLK 368
           G MC L+ L LS   L G L   I+++  GC +NSL+ L L  N++ GS+P+   FSS+ 
Sbjct: 303 GGMCSLRELDLSPNNLSGPLPRSIRNM-HGCVENSLKSLQLRDNQLHGSLPDFTRFSSVT 361

Query: 369 QLNLENNLLNGTIHK--------------------------------------------- 383
           +L++ +N LNG++ K                                             
Sbjct: 362 ELDISHNKLNGSLPKRFRQRSELVSLNLSDNQLTGSLPDVTMLSSLREFLIYNNRLDGNA 421

Query: 384 --SIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLN 441
             SIG L +LE L +  NSL GV+SEA FSNLS+L  LDL+ NSL L+F++DW PPF LN
Sbjct: 422 SESIGSLSQLEKLNVGRNSLQGVMSEAHFSNLSKLQELDLSHNSLVLKFTYDWAPPFLLN 481

Query: 442 TISLGHCKMGPRFPKWLQTQN--------------TVPNWFWDLTHQRM-LLNLSSNQMR 486
            + L  C +GP FP+WL+ QN              T+PNWFWDL++  + LLN S N MR
Sbjct: 482 YLYLSSCNLGPHFPQWLRNQNNLWVLDISGTGISDTIPNWFWDLSNSSLTLLNFSHNNMR 541

Query: 487 ---------------GKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT---SLNLSK 528
                          G +P+  + FD     +D++ N+F G IP    + +   +LNL  
Sbjct: 542 GPQLISLDLSKNLLSGNLPNSLIPFD-GLAFLDLAHNNFSGRIPRSLGSLSMLRTLNLRN 600

Query: 529 NKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF------------------------ 564
           + FS  +         L++LDLS N L GK+P  W                         
Sbjct: 601 HSFSRRLPLSLKKCTDLMFLDLSINKLHGKIP-AWMGESLLSLKFLFLQSNEFHGSIPSH 659

Query: 565 --QFDSLVILNLANNNFFGKIPNSM---------GFLHNIRSLSL--------------- 598
             +   + ILNL+ NN  G IP  +         G L +I S  L               
Sbjct: 660 FCRLRHIKILNLSLNNISGIIPKCLNNYTAMIQKGELTDINSGELGLGQPGQHVNKAWVD 719

Query: 599 YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQL 658
           +   QYEY  +LGL +I+D +  KL G +P+EI+ L+ LVA+NLS NNLTG I  KIGQL
Sbjct: 720 WKGRQYEYVRSLGLFRIIDFAGKKLTGEIPEEIISLLQLVAMNLSGNNLTGGIPLKIGQL 779

Query: 659 KSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPE 718
           K L+ LDLS NQ  G IPSS + LS LS ++LSYNNLSGKIP GTQLQSFN   +AGN  
Sbjct: 780 KQLESLDLSGNQLSGVIPSSTASLSFLSYLNLSYNNLSGKIPSGTQLQSFNASAFAGNLA 839

Query: 719 LCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLI---TFGFYVSVILGFFIGFWGVCGTL 775
           LCGLP+ +KCP +++ P P  +D N  +G + ++      FY ++ +GF + FWGV G L
Sbjct: 840 LCGLPVTHKCPGDEATPRPLANDDN--QGNETVVDEFRRWFYTALGIGFGVFFWGVSGAL 897

Query: 776 L 776
           L
Sbjct: 898 L 898

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/734 (46%), Positives = 443/734 (60%), Gaps = 93/734 (12%)

Query: 36  CIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGF 95
           C+++ER+ALL FK  LVD+ GILSSW  E+++RDCCKW GV CS RT HV  LDL  +  
Sbjct: 52  CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 96  DSF----PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAG 151
           D+      LRG+I+ +LL+LQHL +LDLS N+F GS +PEF+G   KL YL LS A  AG
Sbjct: 112 DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 152 PIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL 211
            IP  LGNLS L FLDLS N   S E L+WLS LSSL +L L   +L     W  ++++L
Sbjct: 172 MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 212 HSLTTLSLYSCDLPPII-PSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD-- 268
            SLT L L+   LP II PS+L   NSS SL V+DL+ N L++SVYPWLFN+SSSLV   
Sbjct: 232 PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLD 291

Query: 269 --------------------------------------------RISLPSNQLQGSIPEA 284
                                                        + L  N L GSIP+ 
Sbjct: 292 LSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPDT 351

Query: 285 FGRMVSLRYLDLSSNELR-GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS 343
           FG M SL YLDLS N+L  GIPK   N+C L+++ L    L  QL EF+Q+ S  C+K++
Sbjct: 352 FGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN-SLSCSKDT 410

Query: 344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGG 403
           LE L LS N+ TGS PN   FS L  L +++N LNGT  + IGQL +LE+L+++GNSL G
Sbjct: 411 LEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLHG 470

Query: 404 VISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ-- 461
            I+EA  S+LS+L  LDL+ NSL LE S +W PPFQ+  + L  CKMGP FP WLQTQ  
Sbjct: 471 NITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQKD 530

Query: 462 ------------NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNH 509
                       + +P+WFW+LT + + L +++NQ+RG+VP  SLR + +   ID+S N 
Sbjct: 531 LFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVP--SLRMETAAV-IDLSLNR 587

Query: 510 FEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSN-RLIYLDLSNNLLSGKLPDCWFQF-D 567
           FEGPIP LPS    L+LSKN FSGSIS LC++ +  L YLDLS+NLLSG LPDCW Q+ D
Sbjct: 588 FEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWRD 647

Query: 568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGV 627
            L ILNLANNNF GK+P S+G L  +++L LYN                    N   G +
Sbjct: 648 QLQILNLANNNFSGKLPYSLGSLAALQTLHLYN--------------------NGFLGEL 687

Query: 628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQ-LKSLDFLDLSRNQFFGGIPSSLSQLSGLS 686
           P  +M+   L  +++ +N  +G+I   IG+ L  L  L L  N+F G I S +  L  L 
Sbjct: 688 PSSLMNCTKLRLVDMGKNRFSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQ 747

Query: 687 VMDLSYNNLSGKIP 700
           ++D S NN+SG IP
Sbjct: 748 ILDFSRNNISGTIP 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 340/725 (46%), Positives = 453/725 (62%), Gaps = 48/725 (6%)

Query: 17  VILFQPQPRVVI-ADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTG 75
           V+L  P P  +  A   +  CI+ ER+ALL FK  ++DE G+LSSW  E+EKRDCCKW G
Sbjct: 12  VLLHIPFPGFITGATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRG 71

Query: 76  VGCSKRTGHVNKLDLQ--PIGFDSF-PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEF 132
           VGC   TGHV  L+L   P+    F PL GK++ +LL+LQHL YLDLS NN    SI +F
Sbjct: 72  VGCDNITGHVTSLNLHSSPLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLD-ESIMDF 130

Query: 133 LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192
           +GSL  L YL LS   F   IP+ L NLSRLQ LDLS++   S ENL WLSHLSSL +L 
Sbjct: 131 IGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLD 190

Query: 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252
           L  +DLS  ++W+Q+++ L  L  L L  C L  IIPS L  +NSS  L V+ L+ NNL+
Sbjct: 191 LSGSDLSKVNDWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLS 250

Query: 253 NSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR-GIPKFLGNM 311
           +++YPWL+N+S+SL D + L  NQLQG +P+ F +M +L  L LS N+L  GIP+ LG M
Sbjct: 251 SAIYPWLYNLSNSLAD-LDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEM 309

Query: 312 CGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLN 371
           C L  L L    L G+LS+  ++L  G T++SLE L L  N++ GS+ ++  FSSL++L+
Sbjct: 310 CSLHTLDLCHNNLTGELSDLTRNL-YGRTESSLEILRLCQNQLRGSLTDIARFSSLRELD 368

Query: 372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFS 431
           + NN LNG+I +SIG L KL+   ++ NSL G++S   FSNLS+L  LDL+ NSL L F 
Sbjct: 369 ISNNQLNGSIPESIGFLSKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFK 428

Query: 432 HDWIPPFQLNTISLGHCKMGPRFPKWLQTQ--------------NTVPNWFWDLTHQRML 477
            DW P FQL  I L  C +GP FPKWL+TQ              +TVPNWFW+L  +   
Sbjct: 429 SDWDPAFQLKNIHLSSCHLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAF 488

Query: 478 LNLSSNQMRGKVPDLSL--RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI 535
           LN+S N MRG +PD S     D + PG D+S N FEG +P  P N  SL LS N FSG I
Sbjct: 489 LNISHNLMRGTLPDFSSVDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPI 548

Query: 536 SFLCSLSNR-LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
           S +C++  + L +LDLSNNLL+G+LP+C+  + +LV+LNLANNN  G+IP+S+G L +++
Sbjct: 549 SLICNIVGKDLSFLDLSNNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQ 608

Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
           +LS                    L+ N L G +P  + +   L  L+LSRN L+G+I   
Sbjct: 609 TLS--------------------LNKNSLYGELPMSLKNCSMLKFLDLSRNQLSGEIPAW 648

Query: 655 IGQ-LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVY 713
           IG+ L SL FL L  N+F G IP  L QL+ L ++DLS N +SG IP    L +   +V 
Sbjct: 649 IGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQNTISGAIP--KCLNNLTTMVL 706

Query: 714 AGNPE 718
            G  E
Sbjct: 707 KGEAE 711

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 323/732 (44%), Positives = 436/732 (59%), Gaps = 99/732 (13%)

Query: 36  CIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGF 95
           CI+ ER+ALL FK  L+D+ G+LS+W  E+EKRDCCKW GVGCS RTGHV  LDL    +
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHRENY 99

Query: 96  DSF--PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI 153
           + +   L G I+ +LL+LQHL+YL+L+ + F GSS P F+GSL KL YL LSS    G +
Sbjct: 100 NGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGTL 159

Query: 154 PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHS 213
            +Q  NLSRLQ+LDLS+    +  +LD+LS+  SL +L L  NDLS   +W+Q+L++L  
Sbjct: 160 SNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLPR 219

Query: 214 LTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP 273
           L  L L SC L  I   SL  +NSS SL ++D + N+L++S++ WL N  +SL+D + L 
Sbjct: 220 LHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLID-LDLS 278

Query: 274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQ 333
            N LQGSIP+ F  M SLR LDLSSN+L+G     G MC L  L +S   L G+LS+   
Sbjct: 279 HNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLF- 337

Query: 334 DLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNL--------------------- 372
               GC +NSLE L L  N++ GS+P++  F+S+++LNL                     
Sbjct: 338 ----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVL 393

Query: 373 --------------------------ENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
                                      NN L+G + +SIG LF+LE L + GNSL GV+S
Sbjct: 394 LYLNDNQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMS 453

Query: 407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ----- 461
           EA FSNLS+L  LDL DNSL L+F  +W P FQL+ I L  C +GP FP+WL+ Q     
Sbjct: 454 EAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNFME 513

Query: 462 ---------NTVPNWFWDLTHQRM-LLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE 511
                    +T+PNWFW+L++ ++ LL+LS N+M G +PD S ++  +   ID+S N FE
Sbjct: 514 LDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKY-ANLRSIDLSFNQFE 572

Query: 512 GPIPPLPSNATS-LNLSKNKFSGSISFLCSL-SNRLIYLDLSNNLLSGKLPDCWFQFDSL 569
           GP+P   S+ TS L LS NKFS   SF C + S+ L  LDLSNNLL+G +PDC      L
Sbjct: 573 GPLPHFSSDTTSTLFLSNNKFSA--SFRCDIGSDILRVLDLSNNLLTGSIPDC---LRGL 627

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK 629
           V+LNLA+NNF GKIP+S+G +  +++LSL+N                    N   G +P 
Sbjct: 628 VVLNLASNNFSGKIPSSIGSMLELQTLSLHN--------------------NSFVGELPL 667

Query: 630 EIMDLVGLVALNLSRNNLTGQITPKIGQ-LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM 688
            +     LV L+LS N L G+I   IG+ + SL  L L  N F G IP +L  LS + ++
Sbjct: 668 SLRSCSSLVFLDLSSNKLRGEIPGWIGESMPSLKVLSLQSNGFSGSIPPNLCHLSNILIL 727

Query: 689 DLSYNNLSGKIP 700
           DLS NN+SG IP
Sbjct: 728 DLSLNNISGIIP 739

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 326/753 (43%), Positives = 433/753 (57%), Gaps = 116/753 (15%)

Query: 33  KTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQP 92
           K  C + ER+ALL FK  +VD+ G+LSSW   ++KRDCCKW GV C+ +TGHV +LDL  
Sbjct: 32  KVGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLH- 90

Query: 93  IGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP 152
               +  L GKI P+L +LQHL +L+LS N+F   + P F G L                
Sbjct: 91  ----AQSLGGKIGPSLAELQHLKHLNLSSNDF--EAFPNFTGIL---------------- 128

Query: 153 IPHQLGNLSRLQFLDLSFN--NLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK 210
            P QLGNLS LQ LDL +N  ++  G NLDWL HL  L +L L   +LS   +W Q ++K
Sbjct: 129 -PTQLGNLSNLQSLDLGYNYGDMTCG-NLDWLCHLPFLTHLDLSWVNLSKAIHWPQAINK 186

Query: 211 LHSLTTLSLYSCDLPPIIPS-SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD- 268
           + SLT L L    LP IIP+ S+ ++NSS SL V+ L  N LT+S+YPWLFN SSSLV  
Sbjct: 187 MPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVHL 246

Query: 269 ----------------------RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IP 305
                                  + L SN+L+GSIP+AFG M +L YLDLS N+LRG IP
Sbjct: 247 DLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLRGSIP 306

Query: 306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSS--------------------GCTKNSLE 345
              GNM  L  L LS  EL+G++ + + DL +                     C  N+LE
Sbjct: 307 DAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTGLKEKDYLACPNNTLE 366

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
            L LS N++ GS PNL  FS L++L L+ N L GT+H+SIGQL +L++L +  NSL G +
Sbjct: 367 VLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIGQLAQLQLLSIPSNSLRGTV 426

Query: 406 SEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ---- 461
           S      LS L+ LDL+ NSLT   S + +P F+ ++I L  CK+GPRFP WLQTQ    
Sbjct: 427 SANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASCKLGPRFPNWLQTQEVLS 486

Query: 462 ----------NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE 511
                     + +PNWFW+LT     LN+S+N + G +P+L  R   S  G+D+SSN  E
Sbjct: 487 ELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQAR---SYLGMDMSSNCLE 543

Query: 512 GPIPPLPSNATSLNLSKNKFSGSISFLCSLSNR----LIYLDLSNNLLSGKLPDCWFQFD 567
           G IP    NA  L+LSKN FSGSIS  C   N+    L +LDLSNN LSG+LP+CW Q+ 
Sbjct: 544 GSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLSNNRLSGELPNCWEQWK 603

Query: 568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGV 627
            L++L+LANNNF GKI NS+G LH +++L L N                    N   G +
Sbjct: 604 DLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCN--------------------NSFTGAL 643

Query: 628 PKEIMDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLS 686
           P  + +   L  ++L +N L+G+IT  + G L  L  L+L  N+F G IPSSL QL  + 
Sbjct: 644 PSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQ 703

Query: 687 VMDLSYNNLSGKIPLGTQLQSFNELVYAGNPEL 719
           ++DLS NNLSGKIP    L++   +   G+P L
Sbjct: 704 MLDLSSNNLSGKIP--KCLKNLTAMAQKGSPVL 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570346|ref|XP_002526132.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534509|gb|EEF36208.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 337/846 (39%), Positives = 459/846 (54%), Gaps = 119/846 (14%)

Query: 14  FCSVILFQPQPRVVI-----ADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKR 68
           F  ++L   +P + +      ++    CI+ ER AL   K  L+D  G LSSWR E++KR
Sbjct: 12  FVVILLMHMKPGLEVEFNPGVETTSGGCIERERHALFRIKDELIDNYGRLSSWRSEEDKR 71

Query: 69  DCCKWTGVGCSKRTGHVNKLDLQ-PIGFDSF-PLRGKITPALLKLQHLTYLDLSRNNFSG 126
           DCCKW G+ CS  TGH+  LDL   +   S+ PLRG ++  LL+L HLTYLDLS+N+F G
Sbjct: 72  DCCKWAGITCSNLTGHITMLDLHVKMNVSSYKPLRGNMSDFLLELIHLTYLDLSQNDFGG 131

Query: 127 SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS 186
           S  P   GSL KL YL L +A F G I   + NLS L                       
Sbjct: 132 SRFPNNNGSLAKLQYLFLFNANFTGTISSIVRNLSNLG---------------------- 169

Query: 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL 246
                      L   ++W+Q++++L  L  L+L SC     IP SL  +NSS++L V+DL
Sbjct: 170 ---------TPLVRPNDWLQIVNRLPQLENLTLSSCFSGNEIPLSLSPVNSSSALTVLDL 220

Query: 247 TENNLT-NSVYPWLFNVSSSLVDRISLPSNQL-QGSIPEAFGRMVSLRYLDLSSNELRG- 303
           + NN    S+ PWL NV+ + +  + L  N   + S  +A G M+SL+ L LS+  L G 
Sbjct: 221 SRNNFVIPSIIPWLSNVTQN-IKHLDLSFNSFSESSTLDAIGNMISLQGLHLSNTSLVGG 279

Query: 304 IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGE 363
           +P+  GNM  L  L LS   L  QLS+ IQ+LS GCT+ SLE L L  N+ITGS+P+L  
Sbjct: 280 LPRSFGNMSQLNYLDLSRNNLNVQLSKLIQNLS-GCTEKSLEHLALHENKITGSLPDLSG 338

Query: 364 FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD 423
           FSSL+ L L NN LNGTI K IGQL++LE L L  NSL GVI+E  F NL+ L  L L+ 
Sbjct: 339 FSSLRHLYLGNNRLNGTIDKRIGQLYELERLNLGWNSLNGVITEDHFLNLTNLRDLILSG 398

Query: 424 NSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ--------------NTVPNWFW 469
           NSL    + +W+PPF L  I L  CK+GP FP+WL++Q              +++P WFW
Sbjct: 399 NSLIWNVTFNWVPPFSLGIIHLQSCKLGPHFPEWLRSQKNYSELDISHNEISDSIPKWFW 458

Query: 470 DLTHQRMLLNLSSNQMRGKVPDLSLRFD-----------ISG------------PGIDIS 506
           DL+    LLNLS N   G VPD+ +               SG              ++++
Sbjct: 459 DLSFASYLLNLSYNLFSGSVPDVFVHMQNLLFLNLANNNFSGQIPTSIGSLFKLETLNLA 518

Query: 507 SNHFEGPIPPLPSNAT---SLNLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSGKLPDC 562
            N   G +P    N T    L LS NK SG++ +++    + L YL L +N   G +P  
Sbjct: 519 GNALSGELPSSLKNCTLLSFLELSGNKLSGNVPTWIGKSLSSLQYLSLQSNHFHGSIPLE 578

Query: 563 WFQFDSLVILNLANNNFFGKIPNSMGFLHNI----------------------------R 594
             Q  ++ IL+L+ NN  G IP+ +  L  +                            +
Sbjct: 579 LCQLTNVQILDLSVNNINGTIPHCLKNLKAMTGQDSTGAIFHSYTWFDGYSTHYNFYIDK 638

Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
           +L L+   +Y+Y  +LGL++I+DLS N+L G +P+E+  L  L  LNLS N LTG I+ +
Sbjct: 639 ALVLWKGRKYDYDKSLGLLRIIDLSRNELQGEIPRELSSLSELKQLNLSNNKLTGAISQE 698

Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYA 714
           IG LK L+ LDLS+NQ  G IP S++ L  LS ++LSYNNLSG+IP  TQLQSFN   + 
Sbjct: 699 IGFLKQLESLDLSQNQLSGRIPDSMAGLHFLSFLNLSYNNLSGRIPSSTQLQSFNASAFT 758

Query: 715 GNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGF----YVSVILGFFIGFWG 770
           GNP LCGLPL  KCP +D+   P+ +  +    ED     GF    Y  + LGF + FWG
Sbjct: 759 GNPALCGLPLTQKCPGDDANQVPQSNTESQQNAED---GDGFRKWLYAGMALGFIVCFWG 815

Query: 771 VCGTLL 776
           V GTLL
Sbjct: 816 VSGTLL 821

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera]

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 351/860 (40%), Positives = 465/860 (54%), Gaps = 150/860 (17%)

Query: 33  KTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQP 92
           K  CI+ ER+ALL FK  +VD+ G+LSSW   ++KRDCCKW GV C+ +TGHV  LDL  
Sbjct: 33  KVGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHVIMLDLX- 91

Query: 93  IGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP 152
                  L GKI P+L KLQHL +L+LS N                         +F G 
Sbjct: 92  ----GGYLGGKIGPSLAKLQHLKHLNLSWN-------------------------DFEGI 122

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           +P QLGNLS LQ LDL +N   +  NLDWLSHL  L +L L   +LS   +W Q + K+ 
Sbjct: 123 LPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLSKAIHWPQAVKKMP 182

Query: 213 SLTTLSLYSCDLPPIIPS-SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS 271
           +LT L L +  LPPI P+ S+ ++NSS SL V++L EN+LT+S+YPWL N SS LV  + 
Sbjct: 183 ALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDLTSSIYPWLLNFSSCLV-HLD 241

Query: 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-----------------------IPKFL 308
           L +N L GSIP+AFG M +L YLDLS N+L G                       IP   
Sbjct: 242 LSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSWNHLHGSIPDAF 301

Query: 309 GNMCGLKILYLSGKELKGQLSEFIQDLSS--------------------GCTKNSLEWLH 348
           GNM  L  L+ SG +L+G++ + ++ L                       C+ N+LE L 
Sbjct: 302 GNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFLACSNNTLEVLD 361

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEA 408
           LS N+  GS P+L  FS L++L+LE N LNGT+ +SIGQL +L++L L  NSL G +S  
Sbjct: 362 LSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQLQVLSLRSNSLRGTVSAN 421

Query: 409 LFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN------ 462
               LS+L  LDL+ NSLT+  S + +P FQ   I L  CK+GP FP WL+TQ       
Sbjct: 422 HLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLGPHFPNWLRTQKHLSMLD 481

Query: 463 -------------------------------------TVPNWFWDLTHQRMLLNLSSNQM 485
                                                 +P   W+     ++LNL++N  
Sbjct: 482 ISASGIANAQFLYRAGLLINLVGVCLISTSQIIDCSGELPK-CWEQWKDLIVLNLANNNF 540

Query: 486 RGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATS---LNLSKNKFSGSISFLC--S 540
            GK+ + S+        + + +N   G +P    N      L+L KNK SG I      S
Sbjct: 541 SGKIKN-SIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLLDLGKNKLSGKIPGWIGGS 599

Query: 541 LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM----GFLHN---- 592
           LSN LI ++L +N  +G +P    Q   + +L+L++NN  G IP  +    G   N    
Sbjct: 600 LSN-LIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTIPKCLNNLSGMAQNGSLV 658

Query: 593 ---------IRSLSLYNRSQYEYK-------STLGLVKILDLSSNKLGGGVPKEIMDLVG 636
                    + SLS Y+ +  ++K        TLGLVK +D S+NKL G +P E+ DLV 
Sbjct: 659 ITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLGLVKSIDFSNNKLIGEIPTEVTDLVE 718

Query: 637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
           LV+LNLSRN L G I   IGQLKSLD LDLSRN+  GGIP SLSQ++ LSV+DLS N LS
Sbjct: 719 LVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGGIPXSLSQIARLSVLDLSDNILS 778

Query: 697 GKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGF 756
           GKIP GTQLQSFN   Y GNP LCG PL  KC ++++        +N  + +D      F
Sbjct: 779 GKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENREVSFTGLSNEEDIQDDANNIWF 838

Query: 757 YVSVILGFFIGFWGVCGTLL 776
           Y +++LGF IGFWGVCGTLL
Sbjct: 839 YGNIVLGFIIGFWGVCGTLL 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487977|ref|XP_003614276.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355515611|gb|AES97234.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 363/970 (37%), Positives = 489/970 (50%), Gaps = 235/970 (24%)

Query: 29  ADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKL 88
           + + + +C + EREALL FK  L D+ G+LS+WR +++ RDCCKW G+GCS  TGHV+ L
Sbjct: 31  SSTKEVKCKEREREALLRFKQGLQDDYGMLSTWRDDEKNRDCCKWNGIGCSNETGHVHML 90

Query: 89  DLQPIGFDSFPLRGKITPALL-KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA 147
           DL   G  +  L G I  +LL +L+++ YLDLSRN F GS IPE + S  KL YL +SS 
Sbjct: 91  DLH--GSGTHLLIGAINLSLLIELKNIKYLDLSRNYFLGSYIPELIDSFTKLRYLNISSC 148

Query: 148 EF-------------------------AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWL 182
           EF                          G IPH+LGNLS+L++L++  NNL  GE    L
Sbjct: 149 EFIGRIPNQLGKLKNLQYLDLKYNEFLEGQIPHELGNLSQLKYLNIEGNNLV-GEIPCEL 207

Query: 183 SHLSSLIYL----------------------YLDLND----------------------- 197
            +L+ L YL                      +LDL D                       
Sbjct: 208 GNLAKLEYLNLGGNSLSGAIPYQLGNLAQLQFLDLGDNLLDGTIPFKIGELLMVLSYLKN 267

Query: 198 --LSNFS-----NWVQLLSK-LHSLTTLSLYSCDLPPIIPSSLLN--LNSSNSLEVIDLT 247
             LS+F+     +W++++SK L +L  L +  CDL  I  S L +   N+S+SL ++D++
Sbjct: 268 LNLSSFNIGHSNHWLKMVSKILPNLRELRVSECDLLDINISPLFDSFCNTSSSLTILDIS 327

Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL------ 301
            N LT+S + WLFN +S+L   + L +N+   S   +     SL  LDLS N+L      
Sbjct: 328 SNMLTSSTFKWLFNFTSNL-KELYLSNNKFVLS-SLSLMNFHSLLILDLSHNKLTPIEAQ 385

Query: 302 -----------------------RGIP-------KFLGNMCGLKI--------------- 316
                                  R IP       K L  +  L I               
Sbjct: 386 DNFIFNFTTKYQKLYLRNCSLSDRNIPLPYASNSKLLSALVSLDISFNMSKSSVIFYWLF 445

Query: 317 --------LYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSL 367
                   L+LS   L+G + +     + G   NSL +L+LS+NE+ G +P + G  S+L
Sbjct: 446 NFTTNLHRLHLSNNLLQGHIPD-----NFGNIMNSLSYLNLSNNELQGEIPTSFGNISTL 500

Query: 368 KQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           + L L NN L G I KSIG L  LE L LN NSL G + E+ F++LS L  L+L+ NSL+
Sbjct: 501 QTLLLSNNQLCGKIPKSIGLLSMLEYLILNKNSLEGKVIESHFASLSNLIRLELSYNSLS 560

Query: 428 LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ--------------NTVPNWFWDLTH 473
           L+F+ DW+PPFQL+ + L  C +GP FP+WLQTQ              +TVP+WFW ++ 
Sbjct: 561 LKFNTDWVPPFQLSRLELASCSLGPSFPRWLQTQSYLLSLNISNARIDDTVPSWFWHMSQ 620

Query: 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG 533
               LNLS N ++G +PDL L F    P + ++SN FE  IPP    A +L+LS NKFS 
Sbjct: 621 NMYALNLSYNNLKGTIPDLPLSFTYF-PILILTSNQFENSIPPFMLKAAALHLSHNKFSN 679

Query: 534 SISFLC---SLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLA--------------- 575
             S LC     +N L  LD+SNN L G++PDCW    SL  L+L+               
Sbjct: 680 LDSLLCHKNDTTNSLGILDVSNNQLKGEIPDCWNSLKSLQYLDLSNNKLWGKIPLSIGTL 739

Query: 576 ---------NNNFFGKIPNSMGFLHNIRSLSL---------------------------Y 599
                    NN     +P+SM  L ++  L +                            
Sbjct: 740 VNLKALVLHNNTLTEDLPSSMKNLTDLTMLDVGENKLSGSIPSWIGENLHQLAVLSLRLN 799

Query: 600 NRSQYEYKSTLG-------------LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNN 646
               Y+Y  +L              L+K +DLS N L G VPKEI  L GLV+LNLSRNN
Sbjct: 800 LLWLYDYYISLMWKGQEDVFKNPELLLKSIDLSGNNLTGEVPKEIGSLFGLVSLNLSRNN 859

Query: 647 LTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQ 706
           L+G+I   IG LKSL+FLDLSRN+F G IP+SL+ +  LSVMDLSYNNL G+IP+GTQLQ
Sbjct: 860 LSGEIMYDIGNLKSLEFLDLSRNRFCGEIPNSLAHIDRLSVMDLSYNNLIGEIPIGTQLQ 919

Query: 707 SFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITFGFYVSVILGFFI 766
           SF    Y GN +LCG PL   C  +D   S   D  N  E E+      FY+S+ LGF +
Sbjct: 920 SFGAYSYEGNLDLCGKPLEKTCSKDDVPVSLVFD--NEFEDEESSFYETFYMSLGLGFAV 977

Query: 767 GFWGVCGTLL 776
           GFWG  G LL
Sbjct: 978 GFWGFIGPLL 987

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443689|ref|XP_003592122.1| Receptor-like protein kinase [Medicago truncatula] gi|355481170|gb|AES62373.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 359/897 (40%), Positives = 493/897 (54%), Gaps = 150/897 (16%)

Query: 17   VILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGV 76
            ++LF      +  ++  T+C + ER ALLTFK  L DE G+LS+W+ E    DCCKW GV
Sbjct: 148  LVLFSIVGFNLATNNGNTKCKERERRALLTFKQDLQDEYGMLSTWK-EGSDADCCKWKGV 206

Query: 77   GCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSL 136
             C+ +TG+V  LDL   G     L G+I P++ +LQHLTYL+LS  N SG  IP+F+GS 
Sbjct: 207  QCNIQTGYVQSLDLH--GSYRRRLFGEINPSITELQHLTYLNLSYLNTSGQ-IPKFIGSF 263

Query: 137  GKLSYLGLSSAEFAGPI------------------PHQLGNLSRLQFLDLSFNNLFSGE- 177
              L YL LS++ F G I                  P QLGNLS+L+ LDLS N L +GE 
Sbjct: 264  CNLRYLDLSNSGFDGKILIGSNILFLCVKSGLYQIPSQLGNLSQLRHLDLSDNEL-TGEI 322

Query: 178  -------------------------NLDWLSHLSSLIYLYLDLNDLSNFSN----WVQLL 208
                                      ++WLS+LSS+    LDL+D+ N ++     +Q L
Sbjct: 323  PFQLGNLSLLQSLLLSSNSNIRINNQIEWLSNLSSV--RILDLSDVQNLNDSSHHTLQFL 380

Query: 209  SKLHSLTTLSLYSCDL--PPIIPSSLLNLN-SSNSLEVIDLTENNLTNS--VYPWLFNVS 263
             KL SL  L L +C L    I+P    ++N S++SL V+DL+ N LT+S  ++ W+ N +
Sbjct: 381  MKLPSLEELHLSNCSLSDADILPLFDSHVNFSTSSLTVLDLSLNQLTSSSMIFDWMLNYN 440

Query: 264  SSLVDRISLPSNQLQGSIPEAFGR-MVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSG 321
            S+L   + L +N L+G+IP  FG  M SL  L+L+SN L G IPK +GN+C L+    + 
Sbjct: 441  SNL-QHLDLSNNLLRGTIPNDFGNIMHSLVSLNLTSNYLEGKIPKSIGNICTLETFDATD 499

Query: 322  KELKGQLSEFIQDLSSGCTKN--SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNG 379
              L GQL        S C  N  SL+ L L +NEI+G +P+L   SSL+ L L  N L G
Sbjct: 500  NRLSGQLDFMTSSNYSHCIGNLSSLQELWLWNNEISGKLPDLSILSSLRLLVLNVNKLTG 559

Query: 380  TIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ 439
             I  SIG L +L+ L L GNS  G+ISE+ F+NLS+L  LDL+DNSLT++ S+DW+PPFQ
Sbjct: 560  EIPASIGSLTELQYLYLGGNSFEGIISESHFTNLSKLEKLDLSDNSLTMKVSNDWVPPFQ 619

Query: 440  LNTISLGHCKMGPRFPKWLQTQNTV--------------PNWFWDLTHQRMLLNLSSNQM 485
            L T+ L  C M  RFP WLQTQN +              P WFW      + +++S+N +
Sbjct: 620  LLTLGLSSCNMNSRFPNWLQTQNELSIISLSNVSNISPTPLWFWGKLQTLVGMSISNNNI 679

Query: 486  RGKVPDLSLRFDISGPGIDISSNHFEGPIP----------------------PLP---SN 520
             G +P+L L    +   I++SSN FEG IP                       LP   +N
Sbjct: 680  TGMIPNLELNL-TNNTMINLSSNQFEGSIPSFLLSNSNILEILDLSNNQIKGELPDCWNN 738

Query: 521  ATSL---NLSKNKFSGSISF-------------------------LCSLSNRLIYLDLSN 552
             TSL   +L  NK  G I F                         L + SN+L  LDL  
Sbjct: 739  LTSLKFVDLRNNKLWGKIPFSMGTLTNMEALILRNNSLSGQLPSSLKNCSNKLALLDLGE 798

Query: 553  NLLSGKLPDCWF--QFDSLVILNLANNNFFGKIPNSMGFLHNIR--SLSLYNRS------ 602
            N   G LP  W      +L IL+L +NNF+G +P+++ +L  ++   LSL N S      
Sbjct: 799  NKFHGPLPS-WIGDSLQNLEILSLRSNNFYGSLPSNLCYLTKLQVLDLSLNNISGRIPTC 857

Query: 603  -QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL 661
               ++K+    +K +DLSSN L G +P E+  L+GL++LNLSRNNL+G+I   IG  K L
Sbjct: 858  VDQDFKNADKFLKTIDLSSNHLTGEIPSEVQYLIGLISLNLSRNNLSGEIISNIGNFKLL 917

Query: 662  DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG 721
            +FLDLSRN   G IPSS++++  L+++DLS N L G IP+GTQLQSFN   + GN  LCG
Sbjct: 918  EFLDLSRNCLSGRIPSSIARIDRLAMLDLSNNQLCGNIPIGTQLQSFNASSFEGNSNLCG 977

Query: 722  LPLRNKCPDEDSAPSPERDDANTPEGEDQLITF--GFYVSVILGFFIGFWGVCGTLL 776
             PL  KCP+ED  PS  +    T  G+D    F    Y+S+ +GFF GF G+ G++L
Sbjct: 978  EPLDRKCPEED--PSKHQVPT-TDAGDDDNSIFLEALYMSMGIGFFTGFVGLVGSML 1031

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.853	0.731	0.325	2.1e-68
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.604	0.425	0.318	9.9e-57
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.591	0.478	0.312	1.8e-54
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.595	0.454	0.314	4.5e-54
TAIR|locus:2181042	967	AT5G01890 [Arabidopsis thalian	0.615	0.494	0.310	5.1e-54
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.588	0.437	0.312	5.8e-52
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.639	0.5	0.296	1.7e-51
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.603	0.416	0.311	1.8e-51
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.582	0.452	0.319	3.5e-51
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.559	0.512	0.291	4.8e-51

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 235/723 (32%), Positives = 344/723 (47%)

Query:    11 YIAFCSVILFQPQPRVVIADSNKTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDC 70
             +I+F  +IL         A S K  CI  ER+ALLTF+A+L D S  L SW   D    C
Sbjct:    10 FISFLILILLLKNLNYGSAASPK--CISTERQALLTFRAALTDLSSRLFSWSGPD----C 63

Query:    71 CKWTGVGCSKRTGHVNKLDL----QPIGFDSFP---LRGKITPALLKLQHLTYLDLSRNN 123
             C W GV C  RT HV K+DL    Q +  D +    LRGKI P+L +L+ L+YLDLS N+
Sbjct:    64 CNWPGVLCDARTSHVVKIDLRNPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSND 123

Query:   124 FSGSSIPEFXXXXXXXXXXXXXXAEFAGPIPHQLGNLSRLQFLDL---SFNNL----FSG 176
             F+   IPEF              + F+G IP  LGNLS+L+ LDL   SF +        
Sbjct:   124 FNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRA 183

Query:   177 ENLDWXXXXXXXXXXXXXXXXXXXXXN--WVQXXXXXXXXXXXXXXXCDXXXXXXXXXXX 234
              NL W                        W+Q                +           
Sbjct:   184 SNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSS 243

Query:   235 XXXXXXXEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYL 294
                    EV+DL+EN+L + +  WLF +++  + ++ L  + LQGSIP  F  +  L  L
Sbjct:   244 ADLKLL-EVLDLSENSLNSPIPNWLFGLTN--LRKLFLRWDFLQGSIPTGFKNLKLLETL 300

Query:   295 DLSSN-ELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN 352
             DLS+N  L+G IP  LG++  LK L LS  EL GQ+  F+ D  S    NSL +L LSSN
Sbjct:   301 DLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFL-DAFSRNKGNSLVFLDLSSN 359

Query:   353 EITGSMP-NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFS 411
             ++ G++P +LG   +L+          G++  SIG +  L+ L L+ N++ G I+E+L  
Sbjct:   360 KLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESL-G 418

Query:   412 NLSRLAALDLADNSL--TLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNT-VPNWF 468
              L+ L  L+L  N+    L+ SH ++    L +I L      P      +  +T +P + 
Sbjct:   419 QLAELVDLNLMANTWGGVLQKSH-FVNLRSLKSIRL---TTEPYRSLVFKLPSTWIPPFR 474

Query:   469 WDLTH-QRMLLNLSSN--QMRGKVPDLSLRFDISGPGID--ISSNHFEGPIPPLPSNATS 523
              +L   +   + L     Q++ K+  ++LR      GI+  I  + F G    + S  T 
Sbjct:   475 LELIQIENCRIGLFPMWLQVQTKLNFVTLR----NTGIEDTIPDSWFSG----ISSKVTY 526

Query:   524 LNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583
             L L+ N+  G +    +   +L  +DLS+N   G  P  W    +   L L  NNF G +
Sbjct:   527 LILANNRIKGRLPQKLAFP-KLNTIDLSSNNFEGTFP-LWST--NATELRLYENNFSGSL 582

Query:   584 PNSMGFLH-NIRSLSLYNRS-QYEYKSTL----GLVKILDLSSNKLGGGVPKEIMDLVGL 637
             P ++  L   +  + L++ S      S+L    GL +IL L  N   G  PK       L
Sbjct:   583 PQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGL-QILSLRKNHFSGSFPKCWHRQFML 641

Query:   638 VALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
               +++S NNL+G+I   +G L SL  L L++N   G IP SL   SGL+ +DL  N L+G
Sbjct:   642 WGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTG 701

Query:   698 KIP 700
             K+P
Sbjct:   702 KLP 704

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 9.9e-57, Sum P(2) = 9.9e-57
 Identities = 161/506 (31%), Positives = 250/506 (49%)

Query:   242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
             +VI L EN  +  +   + N +S  ++ ++L  NQL G IP+  G + SL +L L  N L
Sbjct:   245 QVI-LWENEFSGFIPREISNCTS--LETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGL 301

Query:   302 RG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP- 359
              G IP+ +GN+     +  S   L G++      L  G  +  LE L+L  N++TG++P 
Sbjct:   302 NGTIPREIGNLSYAIEIDFSENALTGEIP-----LELGNIEG-LELLYLFENQLTGTIPV 355

Query:   360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
              L    +L +         G I      L  L ML+L  NSL G I   L    S L  L
Sbjct:   356 ELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL-GWYSDLWVL 414

Query:   420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLN 479
             D++DN L+            +  ++LG   +    P  + T  T+           + L 
Sbjct:   415 DMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTL-----------VQLR 463

Query:   480 LSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN---LSKNKFSGSIS 536
             L+ N + G+ P  +L   ++   I++  N F G IP    N ++L    L+ N F+G + 
Sbjct:   464 LARNNLVGRFPS-NLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELP 522

Query:   537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL 596
                 + ++L  L++S+N L+G++P   F    L  L++  NNF G +P+ +G L+ +  L
Sbjct:   523 REIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELL 582

Query:   597 SLYNRS-QYEYKSTLG-LVKI--LDLSSNKLGGGVPKEIMDLVGL-VALNLSRNNLTGQI 651
              L N +        LG L ++  L +  N   G +P+E+  L GL +ALNLS N LTG+I
Sbjct:   583 KLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEI 642

Query:   652 TPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNEL 711
              P++  L  L+FL L+ N   G IPSS + LS L   + SYN+L+G IPL   L++ +  
Sbjct:   643 PPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMS 699

Query:   712 VYAGNPELCGLPLRNKC-PDEDSAPS 736
              + GN  LCG PL N+C   +  APS
Sbjct:   700 SFIGNEGLCGPPL-NQCIQTQPFAPS 724

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 157/502 (31%), Positives = 239/502 (47%)

Query:   244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
             ++L+ NN + S+ P  F  +   +D   L +N   G I    G   +LR LDL  N L G
Sbjct:   128 LNLSNNNFSGSI-PRGFLPNLYTLD---LSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTG 183

Query:   304 -IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NL 361
              +P +LGN+  L+ L L+  +L G +      +  G  KN L+W++L  N ++G +P  +
Sbjct:   184 HVPGYLGNLSRLEFLTLASNQLTGGVP-----VELGKMKN-LKWIYLGYNNLSGEIPYQI 237

Query:   362 GEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDL 421
             G  SSL           G I  S+G L KLE + L  N L G I  ++FS L  L +LD 
Sbjct:   238 GGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFS-LQNLISLDF 296

Query:   422 ADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKW---LQTQNTVPNWFWDLT------ 472
             +DNSL+ E          L  + L    +  + P+    L     +  W    +      
Sbjct:   297 SDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPAN 356

Query:   473 ---HQRM-LLNLSSNQMRGKVPDLSLRFDISG--PGIDISSNHFEGPIPPLPSNATSLN- 525
                H  + +L+LS+N + GK+PD     D SG    + + SN  +  IPP      SL  
Sbjct:   357 LGKHNNLTVLDLSTNNLTGKLPDTLC--D-SGHLTKLILFSNSLDSQIPPSLGMCQSLER 413

Query:   526 --LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583
               L  N FSG +    +    + +LDLSNN L G + + W     L +L+L+ N FFG++
Sbjct:   414 VRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNI-NTW-DMPQLEMLDLSVNKFFGEL 471

Query:   584 PNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKI-----LDLSSNKLGGGVPKEIMDLVGLV 638
             P+       ++ L L +R++       GL+       LDLS N++ G +P+E+     LV
Sbjct:   472 PD-FSRSKRLKKLDL-SRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLV 529

Query:   639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGK 698
              L+LS NN TG+I     + + L  LDLS NQ  G IP +L  +  L  +++S+N L G 
Sbjct:   530 NLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGS 589

Query:   699 IPLGTQLQSFNELVYAGNPELC 720
             +P      + N     GN +LC
Sbjct:   590 LPFTGAFLAINATAVEGNIDLC 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 4.5e-54, Sum P(2) = 4.5e-54
 Identities = 157/499 (31%), Positives = 234/499 (46%)

Query:   244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELR 302
             +DL+ NNL+  +   L +++S  +  + L  N   G++ +  F    SLRYL LS N L 
Sbjct:   129 LDLSHNNLSGQIPSSLGSITS--LQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLE 186

Query:   303 G-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTK-NSLEWLHLSSNEITGSMPN 360
             G IP  L     L  L LS     G  S F+    SG  +   L  L LSSN ++GS+P 
Sbjct:   187 GQIPSTLFRCSVLNSLNLSRNRFSGNPS-FV----SGIWRLERLRALDLSSNSLSGSIP- 240

Query:   361 LGEFS--SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA 418
             LG  S  +LK+         G +   IG    L  + L+ N   G +   L   L  L  
Sbjct:   241 LGILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTL-QKLKSLNH 299

Query:   419 LDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML- 477
              D+++N L+ +F     PP+  +   L H           +    +P+    +++ R L 
Sbjct:   300 FDVSNNLLSGDF-----PPWIGDMTGLVHLDFSSN-----ELTGKLPS---SISNLRSLK 346

Query:   478 -LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP--LPSNATSLNLSKNKFSGS 534
              LNLS N++ G+VP+ SL        + +  N F G IP          ++ S N  +GS
Sbjct:   347 DLNLSENKLSGEVPE-SLESCKELMIVQLKGNDFSGNIPDGFFDLGLQEMDFSGNGLTGS 405

Query:   535 ISFLCS-LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593
             I    S L   LI LDLS+N L+G +P     F  +  LNL+ N+F  ++P  + FL N+
Sbjct:   406 IPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNL 465

Query:   594 RSLSLYNRSQY-EYKSTL---GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG 649
               L L N +      + +     ++IL L  N L G +P+ I +   L  L+LS NNLTG
Sbjct:   466 TVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTG 525

Query:   650 QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFN 709
              I   +  L+ L  L L  N+  G IP  L  L  L ++++S+N L G++PLG   QS +
Sbjct:   526 PIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSLD 585

Query:   710 ELVYAGNPELCGLPLRNKC 728
             +    GN  +C   LR  C
Sbjct:   586 QSAIQGNLGICSPLLRGPC 604

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2181042 AT5G01890 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 5.1e-54, Sum P(2) = 5.1e-54
 Identities = 160/515 (31%), Positives = 244/515 (47%)

Query:   246 LTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV-SLRYLDLSSNELRG- 303
             L+ NNLT ++ P   ++ S  V  +    N L G IP+ F     SLR + L++N+L G 
Sbjct:    99 LSNNNLTGTLNPEFPHLGSLQV--VDFSGNNLSGRIPDGFFEQCGSLRSVSLANNKLTGS 156

Query:   304 IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LG 362
             IP  L     L  L LS  +L G+L   I  L S      L+ L  S N + G +P+ LG
Sbjct:   157 IPVSLSYCSTLTHLNLSSNQLSGRLPRDIWFLKS------LKSLDFSHNFLQGDIPDGLG 210

Query:   363 EFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA 422
                 L+          G +   IG+   L+ L L+ N   G + +++ S L   +++ L 
Sbjct:   211 GLYDLRHINLSRNWFSGDVPSDIGRCSSLKSLDLSENYFSGNLPDSMKS-LGSCSSIRLR 269

Query:   423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSS 482
              NSL  E   DWI    + T+ +        F        TVP    +L   + L NLS+
Sbjct:   270 GNSLIGEIP-DWIG--DIATLEILDLSAN-NFT------GTVPFSLGNLEFLKDL-NLSA 318

Query:   483 NQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP--LPSNATSLNLSK---NKFSGS--I 535
             N + G++P  +L    +   ID+S N F G +       N+ S +LS+   +K SG+  I
Sbjct:   319 NMLAGELPQ-TLSNCSNLISIDVSKNSFTGDVLKWMFTGNSESSSLSRFSLHKRSGNDTI 377

Query:   536 SFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
               +      L  LDLS+N  +G+LP + W    SL+ LN++ N+ FG IP  +G L    
Sbjct:   378 MPIVGFLQGLRVLDLSSNGFTGELPSNIWI-LTSLLQLNMSTNSLFGSIPTGIGGLKVAE 436

Query:   595 SLSLY-NRSQYEYKSTLG---LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ 650
              L L  N       S +G    +K L L  N+L G +P +I +   L  +NLS N L+G 
Sbjct:   437 ILDLSSNLLNGTLPSEIGGAVSLKQLHLHRNRLSGQIPAKISNCSALNTINLSENELSGA 496

Query:   651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNE 710
             I   IG L +L+++DLSRN   G +P  + +LS L   ++S+NN++G++P G    +   
Sbjct:   497 IPGSIGSLSNLEYIDLSRNNLSGSLPKEIEKLSHLLTFNISHNNITGELPAGGFFNTIPL 556

Query:   711 LVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTP 745
                 GNP LCG  +   C      P     +++ P
Sbjct:   557 SAVTGNPSLCGSVVNRSCLSVHPKPIVLNPNSSNP 591

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 5.8e-52, Sum P(2) = 5.8e-52
 Identities = 154/493 (31%), Positives = 222/493 (45%)

Query:   242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
             E  DL+ N L   + P L ++S+  +D + L  N+L GSIP   GR+  +  + +  N L
Sbjct:   145 EYFDLSINQLVGEIPPELGDLSN--LDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLL 202

Query:   302 RG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
              G IP   GN+  L  LYL    L G +   I +L +      L  L L  N +TG +P+
Sbjct:   203 TGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPN------LRELCLDRNNLTGKIPS 256

Query:   361 -LGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
               G   ++           G I   IG +  L+ L L+ N L G I   L  N+  LA L
Sbjct:   257 SFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTL-GNIKTLAVL 315

Query:   420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKM-GP---RFPK-----WL-----QTQNTVP 465
              L  N L      +      +  + +   K+ GP    F K     WL     Q    +P
Sbjct:   316 HLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIP 375

Query:   466 NWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL- 524
                 + T +  +L L +N   G +PD   R       + +  NHFEGP+P    +  SL 
Sbjct:   376 PGIANST-ELTVLQLDTNNFTGFLPDTICRGG-KLENLTLDDNHFEGPVPKSLRDCKSLI 433

Query:   525 --NLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK 582
                   N FSG IS    +   L ++DLSNN   G+L   W Q   LV   L+NN+  G 
Sbjct:   434 RVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGA 493

Query:   583 IPNSMGFLHNIRSLSLY-NRSQYEYK---STLGLVKILDLSSNKLGGGVPKEIMDLVGLV 638
             IP  +  +  +  L L  NR   E     S +  +  L L+ N+L G +P  I  L  L 
Sbjct:   494 IPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLE 553

Query:   639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGK 698
              L+LS N  + +I P +  L  L +++LSRN     IP  L++LS L ++DLSYN L G+
Sbjct:   554 YLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGE 613

Query:   699 IPLGTQLQSFNEL 711
             I   +Q +S   L
Sbjct:   614 I--SSQFRSLQNL 624

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
 Identities = 162/547 (29%), Positives = 257/547 (46%)

Query:   244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
             +D  +N+   S+ P      + L + + L  N   G IP ++G  +SL++L LS N+LRG
Sbjct:   155 LDAYDNSFNGSL-PLSLTTLTRL-EHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRG 212

Query:   304 -IPKFLGNMCGLKILYLSG-KELKGQL-SEFIQDLSSGCTKNSLEWLHLSSNEITGSMP- 359
              IP  L N+  L  LYL    + +G + ++F      G   N L  L L++  + GS+P 
Sbjct:   213 RIPNELANITTLVQLYLGYYNDYRGGIPADF------GRLIN-LVHLDLANCSLKGSIPA 265

Query:   360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
              LG   +L+          G++ + +G +  L+ L L+ N L G I   L S L +L   
Sbjct:   266 ELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLEL-SGLQKLQLF 324

Query:   420 DLADNSLTLEFSHDWIPPF-----QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQ 474
             +L  N L     H  IP F      L  + L H     + P  L +   +          
Sbjct:   325 NLFFNRL-----HGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNL---------- 369

Query:   475 RMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL---NLSKNKF 531
              + ++LS+N++ G +P+ SL F      + + +N   GP+P        L    L +N  
Sbjct:   370 -IEIDLSTNKLTGLIPE-SLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFL 427

Query:   532 SGSI-SFLCSLSNRLIYLDLSNNLLSGKLPDCWF---QFDSLVILNLANNNFFGKIPNSM 587
             +  +   L  L N L  L+L NN L+G++P+      QF SL  +NL+NN   G IP S+
Sbjct:   428 TSKLPKGLIYLPN-LSLLELQNNFLTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSI 486

Query:   588 GFLHNIRSLSL-YNRSQYEYKSTLGLVKIL---DLSSNKLGGGVPKEIMDLVGLVALNLS 643
               L +++ L L  NR   +    +G +K L   D+S N   G  P E  D + L  L+LS
Sbjct:   487 RNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLS 546

Query:   644 RNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT 703
              N ++GQI  +I Q++ L++L++S N F   +P+ L  +  L+  D S+NN SG +P   
Sbjct:   547 HNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSG 606

Query:   704 QLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLIT-FGFYVSV-I 761
             Q   FN   + GNP LCG    N C    +    +  + N      ++   F  +  + +
Sbjct:   607 QFSYFNNTSFLGNPFLCGFS-SNPCNGSQNQSQSQLLNQNNARSRGEISAKFKLFFGLGL 665

Query:   762 LGFFIGF 768
             LGFF+ F
Sbjct:   666 LGFFLVF 672

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
 Identities = 158/508 (31%), Positives = 251/508 (49%)

Query:   242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
             EVI L +N  +  +   + N++S  ++ ++L  N L G IP   G M SL+ L L  N+L
Sbjct:   257 EVI-LWQNKFSGFIPKDIGNLTS--LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQL 313

Query:   302 RG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
              G IPK LG +  +  +  S   L G++   +  +S       L  L+L  N++TG +PN
Sbjct:   314 NGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISE------LRLLYLFQNKLTGIIPN 367

Query:   361 -LGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
              L +  +L +         G I      L  +  L+L  NSL GVI + L    S L  +
Sbjct:   368 ELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGL-GLYSPLWVV 426

Query:   420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML-L 478
             D ++N L+ +     IPPF     +L    +G       +    +P     L  + +L L
Sbjct:   427 DFSENQLSGK-----IPPFICQQSNLILLNLGSN-----RIFGNIPPGV--LRCKSLLQL 474

Query:   479 NLSSNQMRGKVP-DLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL---NLSKNKFSGS 534
              +  N++ G+ P +L    ++S   I++  N F GP+PP       L   +L+ N+FS +
Sbjct:   475 RVVGNRLTGQFPTELCKLVNLSA--IELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSN 532

Query:   535 I-SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593
             + + +  LSN L+  ++S+N L+G +P        L  L+L+ N+F G +P  +G LH +
Sbjct:   533 LPNEISKLSN-LVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQL 591

Query:   594 RSLSLY-NRSQYEYKSTLG-LVKI--LDLSSNKLGGGVPKEIMDLVGL-VALNLSRNNLT 648
               L L  NR       T+G L  +  L +  N   G +P ++  L  L +A+NLS N+ +
Sbjct:   592 EILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFS 651

Query:   649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQL-QS 707
             G+I P+IG L  L +L L+ N   G IP++   LS L   + SYNNL+G++P  TQ+ Q+
Sbjct:   652 GEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLP-HTQIFQN 710

Query:   708 FNELVYAGNPELCGLPLRNKCPDEDSAP 735
                  + GN  LCG  LR+  P   S P
Sbjct:   711 MTLTSFLGNKGLCGGHLRSCDPSHSSWP 738

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.5e-51, Sum P(2) = 3.5e-51
 Identities = 156/488 (31%), Positives = 251/488 (51%)

Query:   244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
             ++++ NNL++++ P  F     L + ++L  N L G+IP + G + +L+ L L+ N    
Sbjct:   144 LEISGNNLSDTI-PSSFGEFRKL-ESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSP 201

Query:   304 --IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN- 360
               IP  LGN+  L++L+L+G  L G +   +  L+S      L  L L+ N++TGS+P+ 
Sbjct:   202 SQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTS------LVNLDLTFNQLTGSIPSW 255

Query:   361 LGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALD 420
             + +  +++Q         G + +S+G +  L+    + N L G I + L  NL  L +L+
Sbjct:   256 ITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNL--NLLNLESLN 313

Query:   421 LADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNL 480
             L +N L             L+ + L + ++    P  L   +  P  + DL++ R    +
Sbjct:   314 LFENMLEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANS--PLQYVDLSYNRFSGEI 371

Query:   481 SSNQM-RGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLC 539
              +N    GK+  L L  D S  G +IS+N   G    L    T + LS NK SG I    
Sbjct:   372 PANVCGEGKLEYLIL-IDNSFSG-EISNNL--GKCKSL----TRVRLSNNKLSGQIPHGF 423

Query:   540 SLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599
                 RL  L+LS+N  +G +P       +L  L ++ N F G IPN +G L+ I  +S  
Sbjct:   424 WGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEIS-G 482

Query:   600 NRSQYEYKSTLGLVKI-----LDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
               + +  +    LVK+     LDLS N+L G +P+E+     L  LNL+ N+L+G+I  +
Sbjct:   483 AENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKE 542

Query:   655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP--LGTQLQSFNELV 712
             +G L  L++LDLS NQF G IP  L  L  L+V++LSYN+LSGKIP     ++ + +   
Sbjct:   543 VGILPVLNYLDLSSNQFSGEIPLELQNLK-LNVLNLSYNHLSGKIPPLYANKIYAHD--- 598

Query:   713 YAGNPELC 720
             + GNP LC
Sbjct:   599 FIGNPGLC 606

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 4.8e-51, Sum P(2) = 4.8e-51
 Identities = 136/466 (29%), Positives = 211/466 (45%)

Query:   244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
             +DLT  NL   +   L N+S   +  ++L  N+  G IP + G +  LR+L L++N L G
Sbjct:   115 LDLTNCNLYGEIPSSLGNLSHLTL--VNLYFNKFVGEIPASIGNLNQLRHLILANNVLTG 172

Query:   304 -IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-L 361
              IP  LGN+  L  L L    L G++ + I DL     +N    L L+SN + G +P+ L
Sbjct:   173 EIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQ--LRN----LSLASNNLIGEIPSSL 226

Query:   362 GEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDL 421
             G  S+L           G +  SIG L +L ++    NSL G I  + F+NL++L+   L
Sbjct:   227 GNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVL 285

Query:   422 ADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLS 481
             + N+ T  F  D      L    + +      FPK L     +P+    L      + L 
Sbjct:   286 SSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLL---IPS----LES----IYLQ 334

Query:   482 SNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPS---NATSLNLSKNKFSGSISFL 538
              NQ  G +   +         + +  N   GPIP   S   N   L++S N F+G+I   
Sbjct:   335 ENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT 394

Query:   539 CSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF--FGKIPNSMGFLHNIRSL 596
              S    L++LDLS N L G++P C ++ +++V   L++N+F  F         +  +   
Sbjct:   395 ISKLVNLLHLDLSKNNLEGEVPACLWRLNTMV---LSHNSFSSFENTSQEEALIEELDLN 451

Query:   597 SLYNRSQYEYK-STLGLVKILDLSSNKLGGGVPKEIMDLVGLVA-LNLSRNNLTGQITPK 654
             S   +    Y    L  +  LDLS+N   G +P  I +  G +  LNL  NN +G +   
Sbjct:   452 SNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDI 511

Query:   655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
               +   L  LD+S NQ  G  P SL     L ++++  N +    P
Sbjct:   512 FSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFP 557

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	776
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-70
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  248 bits (636), Expect = 3e-70
 Identities = 223/738 (30%), Positives = 339/738 (45%), Gaps = 136/738 (18%)

Query: 39  EEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSF 98
           EE E LL+FK+S+ D    LS+W   +   D C W G+ C+  +  V  +DL        
Sbjct: 29  EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNN-SSRVVSIDLSGKN---- 80

Query: 99  PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLG 158
            + GKI+ A+ +L ++  ++LS N  SG    +   +   L YL LS+  F G IP   G
Sbjct: 81  -ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--G 137

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
           ++  L+ LDLS NN+ SGE           I      ND+ +FS+               
Sbjct: 138 SIPNLETLDLS-NNMLSGE-----------IP-----NDIGSFSS--------------- 165

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
                                 L+V+DL  N L   +   L N++S  ++ ++L SNQL 
Sbjct: 166 ----------------------LKVLDLGGNVLVGKIPNSLTNLTS--LEFLTLASNQLV 201

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS 337
           G IP   G+M SL+++ L  N L G IP  +G +  L  L L    L G +   + +L +
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 338 GCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKL 396
                 L++L L  N+++G +P  +     L  L+L +N L+G I + + QL  LE+L L
Sbjct: 262 ------LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPK 456
             N+  G I  AL ++L RL  L L  N  + E                         PK
Sbjct: 316 FSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEI------------------------PK 350

Query: 457 WLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP 516
            L   N       +LT    +L+LS+N + G++P+  L    +   + + SN  EG IP 
Sbjct: 351 NLGKHN-------NLT----VLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPK 398

Query: 517 LPSNATSLN---LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN 573
                 SL    L  N FSG +    +    + +LD+SNN L G++    +   SL +L+
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKI-----LDLSSNKLGGGVP 628
           LA N FFG +P+S G    + +L L +R+Q+       L  +     L LS NKL G +P
Sbjct: 459 LARNKFFGGLPDSFG-SKRLENLDL-SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM 688
            E+     LV+L+LS N L+GQI     ++  L  LDLS+NQ  G IP +L  +  L  +
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 689 DLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGE 748
           ++S+N+L G +P      + N    AGN +LCG        D  S   P +    TP   
Sbjct: 577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCG-------GDTTSGLPPCKRVRKTP--- 626

Query: 749 DQLITFGFYVSVILGFFI 766
               ++ FY++  LG F+
Sbjct: 627 ----SWWFYITCTLGAFL 640

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 6e-17
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 8/131 (6%)

Query: 603 QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD 662
           Q++       +  L L +  L G +P +I  L  L ++NLS N++ G I P +G + SL+
Sbjct: 410 QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE 469

Query: 663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP--LGTQL---QSFNELVYAGNP 717
            LDLS N F G IP SL QL+ L +++L+ N+LSG++P  LG +L    SFN   +  N 
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNA 526

Query: 718 ELCGLPLRNKC 728
            LCG+P    C
Sbjct: 527 GLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 317 LYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNLENN 375
           L L  + L+G +   I  L        L+ ++LS N I G++P +LG  +SL+ L+L  N
Sbjct: 423 LGLDNQGLRGFIPNDISKL------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476

Query: 376 LLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS 425
             NG+I +S+GQL  L +L LNGNSL G +  AL   L   A+ +  DN+
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 73  WTGVGCS--KRTGH--VNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSS 128
           W+G  C      G   ++ L L     D+  LRG I   + KL+HL  ++LS N+  G+ 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGL-----DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN- 457

Query: 129 IPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE 177
           IP  LGS+  L  L LS   F G IP  LG L+ L+ L+L+ N+L SG 
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGR 505

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 37 IDEEREALLTFKASLV-DESGILSSWRREDEKRDCCKWTGVGCS 79
          ++++R+ALL FK+SL  D SG LSSW       D C WTGV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQL 328
           I+L  N ++G+IP + G + SL  LDLS N   G IP+ LG +  L+IL L+G  L G++
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 39/140 (27%)

Query: 256 YPW-----LFNVSSS--LVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKF 307
           +PW      F+ +     +D + L +  L+G IP    ++  L+ ++LS N +RG IP  
Sbjct: 402 HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Query: 308 LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSS 366
           LG++  L++                              L LS N   GS+P +LG+ +S
Sbjct: 462 LGSITSLEV------------------------------LDLSYNSFNGSIPESLGQLTS 491

Query: 367 LKQLNLENNLLNGTIHKSIG 386
           L+ LNL  N L+G +  ++G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 81/319 (25%), Positives = 131/319 (41%), Gaps = 26/319 (8%)

Query: 111 LQHLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
           L  L  LDL   +   S    E L +L  L  L L+       I   L  L+ L  LDL 
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLD 124

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229
            NN+     L  L   S+L  L L  N + +  + ++ L    +L  L L   DL  +  
Sbjct: 125 NNNITDIPPLIGLLK-SNLKELDLSDNKIESLPSPLRNL---PNLKNLDLSFNDLSDLPK 180

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
                 N    L  +DL+ N +++   P    + S+L + + L +N +   +  +   + 
Sbjct: 181 LLSNLSN----LNNLDLSGNKISD--LPPEIELLSAL-EELDLSNNSII-ELLSSLSNLK 232

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
           +L  L+LS+N+L  +P+ +GN+  L+ L LS  +        I  +SS  +  +L  L L
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ--------ISSISSLGSLTNLRELDL 284

Query: 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL 409
           S N ++ ++P +     L +L L   L    +   +  +        N  S G   S   
Sbjct: 285 SGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLN----NNILSNGETSSPEA 340

Query: 410 FSNLSRLAALDLADNSLTL 428
            S L  L  L   DN+L  
Sbjct: 341 LSILESLNNLWTLDNALDE 359

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 36/134 (26%)

Query: 459 QTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISG----PGIDISSNHFEGPI 514
           Q  +T   WF D       L L +  +RG +P+     DIS       I++S N   G I
Sbjct: 410 QFDSTKGKWFIDG------LGLDNQGLRGFIPN-----DISKLRHLQSINLSGNSIRGNI 458

Query: 515 PPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNL 574
           PP   + TSL +                     LDLS N  +G +P+   Q  SL ILNL
Sbjct: 459 PPSLGSITSLEV---------------------LDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 575 ANNNFFGKIPNSMG 588
             N+  G++P ++G
Sbjct: 498 NGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLG-KLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
            LL+L +LT LDL  NN   + IP  +G L   L  L LS  +    +P  L NL  L+ 
Sbjct: 111 ELLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKN 167

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LDLSFN+L     L  LS+LS+L  L L  N +S+    ++LLS L  L   +    +  
Sbjct: 168 LDLSFNDLSDLPKL--LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-- 223

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
             + SSL NL + + LE+ +    +L  S+         S ++ + L +NQ+  S   + 
Sbjct: 224 --LLSSLSNLKNLSGLELSNNKLEDLPESIGNL------SNLETLDLSNNQI--SSISSL 273

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMC 312
           G + +LR LDLS N L      +  + 
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIALLL 300

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 11/244 (4%)

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDS-LVILNLANN 577
               SL+L+ N+   +IS L  L+N L  LDL NN ++  +P       S L  L+L++N
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTN-LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN 150

Query: 578 NFFGKIPNSMGFLHNIRSLSLYN---RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDL 634
                +P+ +  L N+++L L         +  S L  +  LDLS NK+   +P EI  L
Sbjct: 151 KI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELL 208

Query: 635 VGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNN 694
             L  L+LS N++  ++   +  LK+L  L+LS N+    +P S+  LS L  +DLS N 
Sbjct: 209 SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266

Query: 695 LSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERDDANTPEGEDQLITF 754
           +S  I     L +  EL  +GN     LPL                     E +   I  
Sbjct: 267 IS-SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILL 325

Query: 755 GFYV 758
              +
Sbjct: 326 NNNI 329

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 23/167 (13%)

Query: 283 EAFGRMVSLRYLDLSSNEL-RGIPKFLG-----NMCGLKILYLSGKELKGQLSEFIQDLS 336
           E+  R  SL+ L L++N L     + L          L+ L L    L+G   E    L+
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE---ALA 158

Query: 337 SGCTKN-SLEWLHLSSNEITGS-----MPNLGEFSSLKQLNLENNLLN----GTIHKSIG 386
                N  L+ L+L++N I  +        L    +L+ L+L NN L       + +++ 
Sbjct: 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218

Query: 387 QLFKLEMLKLNGNSLGGV----ISEALFSNLSRLAALDLADNSLTLE 429
            L  LE+L L  N+L       ++ AL S    L  L L+ N +T +
Sbjct: 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 90  LQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEF 149
           LQ I      +RG I P+L  +  L  LDLS N+F+GS IPE LG L  L  L L+    
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502

Query: 150 AGPIPHQLG 158
           +G +P  LG
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS 425
           +LK L+L NN L      +   L  L++L L+GN+L   IS   FS L  L +LDL+ N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGNN 59

Query: 426 L 426
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 30/103 (29%)

Query: 208 LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267
           +SKL  L +++L    +   IP SL ++ S   LEV+DL+                    
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITS---LEVLDLSY------------------- 475

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLG 309
                  N   GSIPE+ G++ SLR L+L+ N L G +P  LG
Sbjct: 476 -------NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 290 SLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
           +L+ LDLS+N L  IP      +  LK+L LSG  L     E    L       SL  L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP------SLRSLD 54

Query: 349 LSSNEI 354
           LS N +
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query: 524 LNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583
           L L      G I    S    L  ++LS N + G +P       SL +L+L+ N+F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 584 PNSMGFLHNIRSLSL 598
           P S+G L ++R L+L
Sbjct: 483 PESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 66/279 (23%), Positives = 101/279 (36%), Gaps = 41/279 (14%)

Query: 110 KLQHLTYLDLSRNNFS---GSSIPEFLGSLGKLSYLGLSSAEFAGPIP-------HQLGN 159
           KL  L  L L  N        ++   L     L  L LS     G IP         L  
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTK 79

Query: 160 LSRLQFLDLSFNNLFSGEN---LDWLSHLSSLIYLYLDLNDLSNFSNWV---QLLSKLHS 213
              LQ LDLS +N    +    L+ L   SSL  L L+ N L +    +    L     +
Sbjct: 80  GCGLQELDLS-DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 214 LTTLSLYSCDLPPIIPSSLLNLNSSN-SLEVIDLTENNLTNSVYPWLFNV--SSSLVDRI 270
           L  L L    L      +L     +N  L+ ++L  N + ++    L     ++  ++ +
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 271 SLPSNQL--QGS--IPEAFGRMVSLRYLDLSSNELR--GIPKFLGNM----CGLKILYLS 320
            L +N L  +G+  + E    + SL  L+L  N L   G       +      L  L LS
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 321 GKELK----GQLSEFIQDLSSGCTKNSLEWLHLSSNEIT 355
             ++       L+E + +      K SL  L L  N+  
Sbjct: 259 CNDITDDGAKDLAEVLAE------KESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	776
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.54
PLN03150	623	hypothetical protein; Provisional	99.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.82
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG4341	483	consensus F-box protein containing LRR [General fu	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
PRK15386	426	type III secretion protein GogB; Provisional	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.3
KOG4308	478	consensus LRR-containing protein [Function unknown	94.45
KOG4308	478	consensus LRR-containing protein [Function unknown	94.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.48
smart00370	26	LRR Leucine-rich repeats, outliers.	86.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.04
smart00370	26	LRR Leucine-rich repeats, outliers.	84.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.27
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.51

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-72  Score=686.03  Aligned_cols=582  Identities=35%  Similarity=0.507  Sum_probs=438.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCE
Q 047152           37 IDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTY  116 (776)
Q Consensus        37 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~  116 (776)
                      .++|+.||++||+++.+|.+.+.+|.   ...+||.|.||+|+. .++|+.|+|++     +.++|.+++++..+++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----KNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----CCccccCChHHhCCCCCCE
Confidence            55899999999999988888889997   467899999999975 57999999998     6788899999999999999


Q ss_pred             EeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152          117 LDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL  195 (776)
Q Consensus       117 L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  195 (776)
                      |+|++|.+++. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|+|++|.+.+ ..+..++++++|++|++++
T Consensus        98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~  173 (968)
T PLN00113         98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGG  173 (968)
T ss_pred             EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECcc
Confidence            99999999875 887654 899999999999999998885  468899999999998864 5556677777777777777


Q ss_pred             CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152          196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN  275 (776)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n  275 (776)
                      |.+.+  .+|..++++++|++|++++|.+.+.+|..++++   ++|++|++++|++.+.+|..+.++++  |++|++++|
T Consensus       174 n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n  246 (968)
T PLN00113        174 NVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM---KSLKWIYLGYNNLSGEIPYEIGGLTS--LNHLDLVYN  246 (968)
T ss_pred             Ccccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCc---CCccEEECcCCccCCcCChhHhcCCC--CCEEECcCc
Confidence            77665  245566677777777777777766666666666   66666666666666666666666666  666666666


Q ss_pred             ccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152          276 QLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI  354 (776)
Q Consensus       276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l  354 (776)
                      ++++.+|..++++++|++|++++|.+++ +|..+.++++|++|++++|.+.+.+|..+..++      +|++|++++|.+
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~------~L~~L~l~~n~~  320 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ------NLEILHLFSNNF  320 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC------CCcEEECCCCcc
Confidence            6666666666666666666666666655 555566666666666666666555555555554      555555555555


Q ss_pred             cccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCC
Q 047152          355 TGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHD  433 (776)
Q Consensus       355 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  433 (776)
                      ++..|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|. .+..+++|+.|++++|++.      
T Consensus       321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~------  393 (968)
T PLN00113        321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLE------  393 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEec------
Confidence            554444 45555555555555555555555555555555555555555554444 3444455555555555444      


Q ss_pred             CCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccccc
Q 047152          434 WIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGP  513 (776)
Q Consensus       434 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~  513 (776)
                                        +.+|.++..           +++|+.|++++|+++|.+|. .+.                  
T Consensus       394 ------------------~~~p~~~~~-----------~~~L~~L~L~~n~l~~~~p~-~~~------------------  425 (968)
T PLN00113        394 ------------------GEIPKSLGA-----------CRSLRRVRLQDNSFSGELPS-EFT------------------  425 (968)
T ss_pred             ------------------ccCCHHHhC-----------CCCCCEEECcCCEeeeECCh-hHh------------------
Confidence                              444443332           23455555555555555444 111                  


Q ss_pred             CCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152          514 IPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI  593 (776)
Q Consensus       514 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  593 (776)
                         .+++|+.|++++|.+++.++..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|
T Consensus       426 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  501 (968)
T PLN00113        426 ---KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL  501 (968)
T ss_pred             ---cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence               13566777777777777777777778889999999999998888765 45889999999999999999888777766


Q ss_pred             cEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee
Q 047152          594 RSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG  673 (776)
Q Consensus       594 ~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  673 (776)
                                          +.|++++|++.+.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|
T Consensus       502 --------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        502 --------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             --------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence                                789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          674 GIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       674 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      .+|..+.++++|++|++++|+++|.+|..+++.++...++.|||.+||.+
T Consensus       562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-58  Score=563.50  Aligned_cols=516  Identities=35%  Similarity=0.485  Sum_probs=412.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY  190 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  190 (776)
                      .+++.|+|++|.+++. +|..+..+++|++|+|++|+++|.+|..+. .+++|++|+|++|++.+ ..+  .+.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p--~~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIP--RGSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccC--ccccCCCCE
Confidence            4688999999999986 888999999999999999999999998765 89999999999999864 222  245778888


Q ss_pred             EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEE
Q 047152          191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI  270 (776)
Q Consensus       191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L  270 (776)
                      |++++|.+++  .++..++++++|++|++++|.+.+..|..++++   ++|++|++++|++.+.+|..+.++++  |+.|
T Consensus       145 L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L  217 (968)
T PLN00113        145 LDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL---TSLEFLTLASNQLVGQIPRELGQMKS--LKWI  217 (968)
T ss_pred             EECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhhhhC---cCCCeeeccCCCCcCcCChHHcCcCC--ccEE
Confidence            8888888776  356677788888888888888877777777777   77888888888877777777777777  7777


Q ss_pred             EccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152          271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL  349 (776)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L  349 (776)
                      ++++|++++.+|..++++++|++|++++|.+++ +|..++++++|++|++++|.+.+.+|..+..++      +|++|++
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L  291 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLISLDL  291 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc------CcCEEEC
Confidence            777777777777777777777777777777776 777777777777777777777777777777666      6777777


Q ss_pred             ccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152          350 SSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       350 ~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      ++|.+.+.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEe
Confidence            77777766665 66677777777777777776776777777777777777777666665 46666666666666666655


Q ss_pred             ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152          429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN  508 (776)
Q Consensus       429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n  508 (776)
                      ..|                        .++..           .++++.+++++|.+.+.+|. .+.             
T Consensus       371 ~~p------------------------~~~~~-----------~~~L~~L~l~~n~l~~~~p~-~~~-------------  401 (968)
T PLN00113        371 EIP------------------------EGLCS-----------SGNLFKLILFSNSLEGEIPK-SLG-------------  401 (968)
T ss_pred             eCC------------------------hhHhC-----------cCCCCEEECcCCEecccCCH-HHh-------------
Confidence            433                        33222           23466667777766666554 111             


Q ss_pred             cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCcccc
Q 047152          509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMG  588 (776)
Q Consensus       509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  588 (776)
                              .+++|+.|++++|++++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++
T Consensus       402 --------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~  473 (968)
T PLN00113        402 --------ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG  473 (968)
T ss_pred             --------CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence                    146788888999998888888888899999999999999999999888999999999999999988887543


Q ss_pred             ccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcC
Q 047152          589 FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSR  668 (776)
Q Consensus       589 ~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  668 (776)
                       .                    ++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus       474 -~--------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  532 (968)
T PLN00113        474 -S--------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH  532 (968)
T ss_pred             -c--------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence             2                    3458899999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152          669 NQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       669 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      |++++.+|..+..+++|+.|++++|+++|.+|.. ..+..+..+.+.+|+..+..|
T Consensus       533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999999999999999999999999999975 456678888999998776544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-41  Score=336.03  Aligned_cols=510  Identities=26%  Similarity=0.348  Sum_probs=320.0

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL  191 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  191 (776)
                      ..++.|++++|.+.  .+...+.++..|.+|++++|+++ .+|.+++.+.+++.|+.++|++.  ..|+.++.+.+|+.|
T Consensus        45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhh
Confidence            34555556666555  24445555666666666666665 55555666666666666666654  455556666666666


Q ss_pred             EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEE
Q 047152          192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS  271 (776)
Q Consensus       192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~  271 (776)
                      +.++|.+..   +++.++.+..|+.++..+|+++. .|..++.+   .+|..+++.+|++....|..+. ++.  |++++
T Consensus       120 ~~s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~---~~l~~l~~~~n~l~~l~~~~i~-m~~--L~~ld  189 (565)
T KOG0472|consen  120 DCSSNELKE---LPDSIGRLLDLEDLDATNNQISS-LPEDMVNL---SKLSKLDLEGNKLKALPENHIA-MKR--LKHLD  189 (565)
T ss_pred             hccccceee---cCchHHHHhhhhhhhcccccccc-CchHHHHH---HHHHHhhccccchhhCCHHHHH-HHH--HHhcc
Confidence            666666555   34556666666666666666654 34445555   6677777777777754444444 666  88888


Q ss_pred             ccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                      ...|.+. .+|+.++.+.+|+.|++..|++..+| .|..+..|++++++.|.+..........+.      ++..|||.+
T Consensus       190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~------~l~vLDLRd  261 (565)
T KOG0472|consen  190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN------SLLVLDLRD  261 (565)
T ss_pred             cchhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc------cceeeeccc
Confidence            8777776 57788888888888888888888888 688888888888888888766555555676      888888888


Q ss_pred             ccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCC--CCcEEE--CCCCccc
Q 047152          352 NEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLS--RLAALD--LADNSLT  427 (776)
Q Consensus       352 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~--Ls~n~l~  427 (776)
                      |+++..+..+..+.+|++||+|+|.++ ..|.+++++ .|+.|.+.+|.+.. +-...+..-+  -|++|.  +..-.++
T Consensus       262 Nklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS  338 (565)
T KOG0472|consen  262 NKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLS  338 (565)
T ss_pred             cccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCC
Confidence            888866555778888888999998888 567788888 88888888888742 2221111110  011111  0000111


Q ss_pred             eecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccC
Q 047152          428 LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISS  507 (776)
Q Consensus       428 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~  507 (776)
                      ..-...-.               .+..|.|..     |.  .....+.+.|+++.-+++ .+|+.-+....         
T Consensus       339 ~se~~~e~---------------~~t~~~~~~-----~~--~~~~i~tkiL~~s~~qlt-~VPdEVfea~~---------  386 (565)
T KOG0472|consen  339 QSEGGTET---------------AMTLPSESF-----PD--IYAIITTKILDVSDKQLT-LVPDEVFEAAK---------  386 (565)
T ss_pred             CCcccccc---------------cCCCCCCcc-----cc--hhhhhhhhhhcccccccc-cCCHHHHHHhh---------
Confidence            00000000               000010000     00  011123444444444443 23321111000         


Q ss_pred             CcccccCCCCCCCCcEEEccCCccccCCCccccCCCCc-cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCcc
Q 047152          508 NHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRL-IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS  586 (776)
Q Consensus       508 n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  586 (776)
                                -.-++..+++.|++.. +|..+..+..+ +.+++++|.++ .+|..++.+++|..|+|++|-+. .+|..
T Consensus       387 ----------~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e  453 (565)
T KOG0472|consen  387 ----------SEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEE  453 (565)
T ss_pred             ----------hcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchh
Confidence                      0113445555555543 22222222222 33456666664 77788888888888888888776 67877


Q ss_pred             ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeC
Q 047152          587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL  666 (776)
Q Consensus       587 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  666 (776)
                      ++.+..|                    +.||+|+|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|.+|||
T Consensus       454 ~~~lv~L--------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  454 MGSLVRL--------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hhhhhhh--------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            7777666                    67888888888 78888888888888888889998666666999999999999


Q ss_pred             cCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC--CcccccccccccCC
Q 047152          667 SRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYAGN  716 (776)
Q Consensus       667 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN  716 (776)
                      .+|.+. .+|..++++++|++|++.+|+|.  .|..  -...+..-++|.++
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence            999998 78889999999999999999997  4432  11233334555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=326.84  Aligned_cols=400  Identities=25%  Similarity=0.241  Sum_probs=279.9

Q ss_pred             ccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEecc
Q 047152          241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS  320 (776)
Q Consensus       241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls  320 (776)
                      -..||.+++.+.......+...-...-+.|++++|++...-+..|.++++|+++++..|.++.||...+...+|+.|+|.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            34456665555432111111111111677999999999888899999999999999999999999887778889999999


Q ss_pred             CCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc
Q 047152          321 GKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN  399 (776)
Q Consensus       321 ~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N  399 (776)
                      +|.|+....+.+..++      .|+.|||+.|.++..... +..-.++++|+|++|.|+......|..+.+|..|.|++|
T Consensus       134 ~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  134 HNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             ccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            9999999999999888      899999999999865443 777789999999999999888888999999999999999


Q ss_pred             cccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEE
Q 047152          400 SLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLN  479 (776)
Q Consensus       400 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~  479 (776)
                      +++ .+|...|.++++|+.|+|..|+|....--.|.++.+|+.+.+.+|.+..           +.+..           
T Consensus       208 rit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-----------L~DG~-----------  264 (873)
T KOG4194|consen  208 RIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-----------LDDGA-----------  264 (873)
T ss_pred             ccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-----------ccCcc-----------
Confidence            997 5566689999999999999999875544556666666666555555420           11111           


Q ss_pred             cccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccC
Q 047152          480 LSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL  559 (776)
Q Consensus       480 l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  559 (776)
                                                         ...+.++++|+++.|+++..-..++-++++|+.|+||+|.|...-
T Consensus       265 -----------------------------------Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  265 -----------------------------------FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             -----------------------------------eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence                                               111456667777777777666666667788888888888888777


Q ss_pred             ChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCE
Q 047152          560 PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA  639 (776)
Q Consensus       560 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  639 (776)
                      ++.+..+++|++|+|++|+++..-+.+|..+..|                    ++|+|++|+++..--..|..+++|++
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L--------------------e~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL--------------------EELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHh--------------------hhhcccccchHHHHhhHHHHhhhhhh
Confidence            7777888888888888888887777777666666                    45556666665444455556666666


Q ss_pred             EECcCCcccCcCcc---cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCC
Q 047152          640 LNLSRNNLTGQITP---KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN  716 (776)
Q Consensus       640 L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  716 (776)
                      |||++|.+++.|.+   .|..+++|+.|++.+|++.......|..+..|++|||.+|.+...-|..-....++++.+..-
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSs  449 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSS  449 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhccc
Confidence            66666666544432   344456666666666666644445566666666666666666543333211114444445444


Q ss_pred             CCCCCCCC
Q 047152          717 PELCGLPL  724 (776)
Q Consensus       717 ~~lc~~~l  724 (776)
                      ..+|+|.+
T Consensus       450 sflCDCql  457 (873)
T KOG4194|consen  450 SFLCDCQL  457 (873)
T ss_pred             ceEEeccH
Confidence            56666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-36  Score=309.63  Aligned_cols=373  Identities=23%  Similarity=0.279  Sum_probs=263.6

Q ss_pred             CccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEe
Q 047152          240 SLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILY  318 (776)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~  318 (776)
                      .-+.||+++|++....+..|.++++  |+++++.+|.++ .+|...+...+|+.|+|.+|.|+.+ .+.+..++.|+.||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~n--Lq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPN--LQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCc--ceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            3455677777777666666777777  777777777776 4565555555677777777777773 45677777778888


Q ss_pred             ccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECC
Q 047152          319 LSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN  397 (776)
Q Consensus       319 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  397 (776)
                      ||.|.|+......|..-.      ++++|+|++|+|+..... |..+.+|..|.|++|+++...+..|.++++|+.|+|.
T Consensus       156 LSrN~is~i~~~sfp~~~------ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKV------NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhchhhcccCCCCCCCC------CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            888777766555444433      688888888888865554 7778888888888888887777778888888888888


Q ss_pred             CccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccE
Q 047152          398 GNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML  477 (776)
Q Consensus       398 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~  477 (776)
                      .|++. .+....|.++++|+.|.+..|++.......|..+.++++|+++.|++...--.|+..                 
T Consensus       230 rN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-----------------  291 (873)
T KOG4194|consen  230 RNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-----------------  291 (873)
T ss_pred             cccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-----------------
Confidence            88884 333346888888888888888888777788888888887777777765332222222                 


Q ss_pred             EEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccc
Q 047152          478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG  557 (776)
Q Consensus       478 L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  557 (776)
                                                              +..|+.|++++|.|..+-+..+..+++|+.|+|++|+|+.
T Consensus       292 ----------------------------------------Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  292 ----------------------------------------LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             ----------------------------------------cchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence                                                    2445555666666655555556666777777777777776


Q ss_pred             cCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCch---hhhcc
Q 047152          558 KLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK---EIMDL  634 (776)
Q Consensus       558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l  634 (776)
                      ..+..|..+..|++|+|++|.+...-...|..+++|                    ++|||++|.++..|-+   .|..+
T Consensus       332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL--------------------~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL--------------------HKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh--------------------hhhcCcCCeEEEEEecchhhhccc
Confidence            666667777777777777777764444444444444                    5666677766654433   35678


Q ss_pred             ccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152          635 VGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP  700 (776)
Q Consensus       635 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  700 (776)
                      ++|+.|++.+|++....-..|..+.+||.|||.+|.|...-|..|..+ .|+.|-+..-.+-|.+.
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            888888888888885555678888888888888888888888888887 78888777777766643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.1e-39  Score=318.61  Aligned_cols=497  Identities=26%  Similarity=0.300  Sum_probs=349.0

Q ss_pred             cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCC
Q 047152          132 FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL  211 (776)
Q Consensus       132 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  211 (776)
                      .+..-..|+.|.+++|.+. .+...+.++..|.+|++++|++.  ..|++++.+..++.|+.++|+++.   +|+.++.+
T Consensus        40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls~---lp~~i~s~  113 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLSE---LPEQIGSL  113 (565)
T ss_pred             hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHhh---ccHHHhhh
Confidence            3444567889999999998 55567889999999999999987  788899999999999999999887   56888888


Q ss_pred             CCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCC
Q 047152          212 HSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL  291 (776)
Q Consensus       212 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  291 (776)
                      .+|..++.+.|.+... ++.++.+   -.|+.++..+|+++ +.|+.++++.+  +..+++.+|++....|..+. ++.|
T Consensus       114 ~~l~~l~~s~n~~~el-~~~i~~~---~~l~dl~~~~N~i~-slp~~~~~~~~--l~~l~~~~n~l~~l~~~~i~-m~~L  185 (565)
T KOG0472|consen  114 ISLVKLDCSSNELKEL-PDSIGRL---LDLEDLDATNNQIS-SLPEDMVNLSK--LSKLDLEGNKLKALPENHIA-MKRL  185 (565)
T ss_pred             hhhhhhhccccceeec-CchHHHH---hhhhhhhccccccc-cCchHHHHHHH--HHHhhccccchhhCCHHHHH-HHHH
Confidence            8999999998888664 4455555   67888888888877 56777777777  78888888888765555554 8888


Q ss_pred             CEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEE
Q 047152          292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQL  370 (776)
Q Consensus       292 ~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L  370 (776)
                      ++||...|.+..+|+.++.+.+|..|++..|++...+  .|....      .|++++++.|++...... ...++++.+|
T Consensus       186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs------~L~Elh~g~N~i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  186 KHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCS------LLKELHVGENQIEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccH------HHHHHHhcccHHHhhHHHHhcccccceee
Confidence            8888888888888888888888888888888776432  444444      677777777777643333 4577777777


Q ss_pred             eccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCC
Q 047152          371 NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM  450 (776)
Q Consensus       371 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  450 (776)
                      |+..|+++ ..|+.+.-+.+|++||+++|.+++..+  .++++ .|+.|.+.+|.+...-..-+...+            
T Consensus       258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTiRr~ii~~gT------------  321 (565)
T KOG0472|consen  258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTIRREIISKGT------------  321 (565)
T ss_pred             eccccccc-cCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHHHHHHHcccH------------
Confidence            77777777 667777777777777777777765433  36666 677777777776421110000000            


Q ss_pred             CCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC--CCCCcEEEccC
Q 047152          451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL--PSNATSLNLSK  528 (776)
Q Consensus       451 ~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~  528 (776)
                          ..                 -|++|.   .++...-+... ...+. ...+.    ..+..|..  ..+.+.|++++
T Consensus       322 ----~~-----------------vLKyLr---s~~~~dglS~s-e~~~e-~~~t~----~~~~~~~~~~~i~tkiL~~s~  371 (565)
T KOG0472|consen  322 ----QE-----------------VLKYLR---SKIKDDGLSQS-EGGTE-TAMTL----PSESFPDIYAIITTKILDVSD  371 (565)
T ss_pred             ----HH-----------------HHHHHH---HhhccCCCCCC-ccccc-ccCCC----CCCcccchhhhhhhhhhcccc
Confidence                00                 011100   00000000000 00000 00000    00111111  34566777777


Q ss_pred             CccccCCCccccCC--CCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152          529 NKFSGSISFLCSLS--NRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY  606 (776)
Q Consensus       529 n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~  606 (776)
                      -+++..+.+.|..-  .-....+++.|++. ++|..+..+..+.+.-+..|+..+.+|..++.+++|             
T Consensus       372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL-------------  437 (565)
T KOG0472|consen  372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL-------------  437 (565)
T ss_pred             cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc-------------
Confidence            77776655555432  23667788888887 677776666655544433444444777777766666             


Q ss_pred             ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCC
Q 047152          607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLS  686 (776)
Q Consensus       607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  686 (776)
                             ..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..|+.+-.++|++....|+.+.++..|+
T Consensus       438 -------t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  438 -------TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             -------eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence                   78899999888 79999999999999999999999 7999999999999999999999977778899999999


Q ss_pred             eeeCCCCcceecCCCCCcccccccccccCCCCC
Q 047152          687 VMDLSYNNLSGKIPLGTQLQSFNELVYAGNPEL  719 (776)
Q Consensus       687 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~l  719 (776)
                      +||+.+|.+....|.-+.+.++..+.+.|||+-
T Consensus       509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            999999999866566688999999999999764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=321.34  Aligned_cols=496  Identities=27%  Similarity=0.285  Sum_probs=284.2

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152          105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH  184 (776)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~  184 (776)
                      |..+..-..++.|++++|.+-... -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+.  ..+....+
T Consensus        14 p~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~   89 (1081)
T KOG0618|consen   14 PEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--SVPSSCSN   89 (1081)
T ss_pred             chhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--hCchhhhh
Confidence            333333344555555555444211 122333334555555555554 45555555555555555555554  33345555


Q ss_pred             CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152          185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS  264 (776)
Q Consensus       185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  264 (776)
                      +++|++|.|..|.+..   .|..+..+++|++|++++|.+.. +|..+..+   ..++.++.++|.....    ++... 
T Consensus        90 ~~~l~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~l---t~~~~~~~s~N~~~~~----lg~~~-  157 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGP-IPLVIEVL---TAEEELAASNNEKIQR----LGQTS-  157 (1081)
T ss_pred             hhcchhheeccchhhc---CchhHHhhhcccccccchhccCC-CchhHHhh---hHHHHHhhhcchhhhh----hcccc-
Confidence            5555555555555554   34555556666666666665533 34444444   4555555665521111    11111 


Q ss_pred             CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCc
Q 047152          265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSL  344 (776)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L  344 (776)
                        ++.+++..|.+.+.++..+..+++  .|+|++|.+..  ..+..+++|+.+....|+++...-.    -      ++|
T Consensus       158 --ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~~----g------~~l  221 (1081)
T KOG0618|consen  158 --IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEIS----G------PSL  221 (1081)
T ss_pred             --chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEEec----C------cch
Confidence              556666666666666666666555  67777776662  3455666677777777666543211    1      167


Q ss_pred             cEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCC
Q 047152          345 EWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN  424 (776)
Q Consensus       345 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  424 (776)
                      +.|+.++|.++...+. ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|+++ .+|. .+....+|+.|++..|
T Consensus       222 ~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  222 TALYADHNPLTTLDVH-PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYN  297 (1081)
T ss_pred             heeeeccCcceeeccc-cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhh
Confidence            7777777777633322 23356777777777777 44577777777777777777774 3444 3555667777777777


Q ss_pred             ccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhcc-CcccEEEcccccCcccCCcccccccCCCCeE
Q 047152          425 SLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLT-HQRMLLNLSSNQMRGKVPDLSLRFDISGPGI  503 (776)
Q Consensus       425 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~-~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l  503 (776)
                      ++.. +|....+...|+.|++..|++. .+|.          .++... ..+..++.+.|++. ..|.+.-         
T Consensus       298 el~y-ip~~le~~~sL~tLdL~~N~L~-~lp~----------~~l~v~~~~l~~ln~s~n~l~-~lp~~~e---------  355 (1081)
T KOG0618|consen  298 ELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPD----------NFLAVLNASLNTLNVSSNKLS-TLPSYEE---------  355 (1081)
T ss_pred             hhhh-CCCcccccceeeeeeehhcccc-ccch----------HHHhhhhHHHHHHhhhhcccc-ccccccc---------
Confidence            7663 3444555666667777666654 2222          111111 12444444444443 1111000         


Q ss_pred             eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccC
Q 047152          504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI  583 (776)
Q Consensus       504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  583 (776)
                                  ...+.|+.|++.+|.++...-..+.+..+|++|+|++|++......++.++..|+.|+||+|+++ .+
T Consensus       356 ------------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L  422 (1081)
T KOG0618|consen  356 ------------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL  422 (1081)
T ss_pred             ------------hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence                        01345667777777777666666677778888888888887443455677788888888888887 66


Q ss_pred             CccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCe
Q 047152          584 PNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF  663 (776)
Q Consensus       584 p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  663 (776)
                      |.++..+..|                    ++|...+|++. ..| ++.+++.|+.+|+|.|+++...-..-..-++|++
T Consensus       423 p~tva~~~~L--------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky  480 (1081)
T KOG0618|consen  423 PDTVANLGRL--------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY  480 (1081)
T ss_pred             hHHHHhhhhh--------------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence            7777766666                    45566667776 556 6777777888888877776332222222267888


Q ss_pred             eeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          664 LDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       664 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                      ||+++|.-....-..|..+.++...++.-|
T Consensus       481 LdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  481 LDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eeccCCcccccchhhhHHhhhhhheecccC
Confidence            888887643344455555666666666555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1e-34  Score=314.86  Aligned_cols=476  Identities=27%  Similarity=0.328  Sum_probs=264.3

Q ss_pred             EecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccC
Q 047152          142 LGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS  221 (776)
Q Consensus       142 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~  221 (776)
                      +|++.++++ .||..+-.-..++.|++++|.+.. .+.+.+.+.-+|+.||+++|.+..+   |..+..+..|+.|+++.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~~f---p~~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQISSF---PIQITLLSHLRQLNLSR   77 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhcccccccc-CchHHhhheeeeEEeeccccccccC---CchhhhHHHHhhcccch
Confidence            455556655 556555544446666666666543 2234444444566777777666653   34445555555555555


Q ss_pred             CCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCC
Q 047152          222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL  301 (776)
Q Consensus       222 n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  301 (776)
                      |.+.. .|.+..++   ++|+++.|..|.+. .                          .|..+..+++|++|+++.|.+
T Consensus        78 n~i~~-vp~s~~~~---~~l~~lnL~~n~l~-~--------------------------lP~~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen   78 NYIRS-VPSSCSNM---RNLQYLNLKNNRLQ-S--------------------------LPASISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             hhHhh-Cchhhhhh---hcchhheeccchhh-c--------------------------CchhHHhhhcccccccchhcc
Confidence            55433 22333333   55555555555543 3                          444445555555555555555


Q ss_pred             CCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCcccccc
Q 047152          302 RGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGT  380 (776)
Q Consensus       302 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~  380 (776)
                      ..+|..+..+..+..+..++|....    .++..       .++.+++..|.+.+.++. +..+..  .|||++|.+.  
T Consensus       127 ~~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~-------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--  191 (1081)
T KOG0618|consen  127 GPIPLVIEVLTAEEELAASNNEKIQ----RLGQT-------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--  191 (1081)
T ss_pred             CCCchhHHhhhHHHHHhhhcchhhh----hhccc-------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence            5555555555555555555541111    11111       244444444444443333 333333  4555555554  


Q ss_pred             chhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhc
Q 047152          381 IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQT  460 (776)
Q Consensus       381 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  460 (776)
                       ...+..+.+|+.+....|++....     ...++|+.|+.++|.++...  ......+|+++++++|+++ .+|.|+..
T Consensus       192 -~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~  262 (1081)
T KOG0618|consen  192 -VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGA  262 (1081)
T ss_pred             -hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHh
Confidence             123344555555555555553221     12345555555555555211  1122335566666666554 33344443


Q ss_pred             cCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC--CCCCcEEEccCCccccCCCcc
Q 047152          461 QNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL--PSNATSLNLSKNKFSGSISFL  538 (776)
Q Consensus       461 ~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~~~~~~~  538 (776)
                                 +.+++.++..+|++. .+|. .+.....++.+++..|.++-..|..  ...|++|++..|++....+..
T Consensus       263 -----------~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~  329 (1081)
T KOG0618|consen  263 -----------CANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF  329 (1081)
T ss_pred             -----------cccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence                       345777777777773 3443 2333333466666667666443332  567888888888887666655


Q ss_pred             ccCCCC-ccEEECcCCcccccCCh-hhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccc----ccccc
Q 047152          539 CSLSNR-LIYLDLSNNLLSGKLPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK----STLGL  612 (776)
Q Consensus       539 ~~~l~~-L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~----~~l~~  612 (776)
                      +..... |+.|+.+.|++. ..|. .=..+..|+.|++.+|.++...-..+.+...|+.|+|+++.+..++    .++..
T Consensus       330 l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~  408 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE  408 (1081)
T ss_pred             HhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence            554443 677777777776 3331 1123567788888888887776666777777766666665444333    35566


Q ss_pred             ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC-CccCcCCCCCCeeeCC
Q 047152          613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI-PSSLSQLSGLSVMDLS  691 (776)
Q Consensus       613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls  691 (776)
                      |+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.++++|+.+|+|.|+++... |... .-++|++||++
T Consensus       409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlS  484 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLS  484 (1081)
T ss_pred             hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeecc
Confidence            677777777777 67777777777777777777776 456 6777777777777777776443 3322 22677777777


Q ss_pred             CCcc
Q 047152          692 YNNL  695 (776)
Q Consensus       692 ~N~l  695 (776)
                      +|..
T Consensus       485 GN~~  488 (1081)
T KOG0618|consen  485 GNTR  488 (1081)
T ss_pred             CCcc
Confidence            7763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.1e-34  Score=296.99  Aligned_cols=388  Identities=29%  Similarity=0.399  Sum_probs=235.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      -++..+-.|+++|.|+|..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++..  ..          
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~--vh----------   71 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS--VH----------   71 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--hh----------
Confidence            35667778888888887778888888888888888888887 788888888888888888877642  11          


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR  269 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~  269 (776)
                                      ..++.++.                           |+.+++..|++..                
T Consensus        72 ----------------GELs~Lp~---------------------------LRsv~~R~N~LKn----------------   92 (1255)
T KOG0444|consen   72 ----------------GELSDLPR---------------------------LRSVIVRDNNLKN----------------   92 (1255)
T ss_pred             ----------------hhhccchh---------------------------hHHHhhhcccccc----------------
Confidence                            22222223                           3333333333221                


Q ss_pred             EEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152          270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL  349 (776)
Q Consensus       270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L  349 (776)
                               .-+|..+..+..|+.|||++|++.+.|..+..-+++-+|+||+|+|..++...+.++.      .|-.|||
T Consensus        93 ---------sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt------DLLfLDL  157 (1255)
T KOG0444|consen   93 ---------SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT------DLLFLDL  157 (1255)
T ss_pred             ---------CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH------hHhhhcc
Confidence                     0133334444444555555555555555555555555555555555544444444554      5555666


Q ss_pred             ccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccc-ccccHHhhhCCCCCcEEECCCCccce
Q 047152          350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG-GVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       350 ~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      ++|++...+|.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|. .+..+.+|..+|+|.|.+. 
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-
Confidence            66666555555555556666666666554322223333444555555544322 12232 3344444444444444332 


Q ss_pred             ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152          429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN  508 (776)
Q Consensus       429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n  508 (776)
                                              .+          |+.++.                                      
T Consensus       236 ------------------------~v----------Pecly~--------------------------------------  243 (1255)
T KOG0444|consen  236 ------------------------IV----------PECLYK--------------------------------------  243 (1255)
T ss_pred             ------------------------cc----------hHHHhh--------------------------------------
Confidence                                    11          111110                                      


Q ss_pred             cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc-ccCCccc
Q 047152          509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF-GKIPNSM  587 (776)
Q Consensus       509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~  587 (776)
                               +.+|+.|++++|+|+...- ......+|+.|++|.|+++ .+|++++.++.|+.|.+.+|+++ .-+|..+
T Consensus       244 ---------l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  244 ---------LRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             ---------hhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence                     1223333333333332111 1122467899999999998 89999999999999999999885 3477778


Q ss_pred             cccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCc
Q 047152          588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLS  667 (776)
Q Consensus       588 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  667 (776)
                      +.+.+|                    +++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|++||+.
T Consensus       313 GKL~~L--------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  313 GKLIQL--------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             hhhhhh--------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence            777766                    67788888888 89999999999999999999988 689999999999999999


Q ss_pred             CceeeecCCccCcCCCCCCeeeCC
Q 047152          668 RNQFFGGIPSSLSQLSGLSVMDLS  691 (776)
Q Consensus       668 ~N~l~~~~p~~l~~l~~L~~L~ls  691 (776)
                      .|.-.-..|.-=..-++|+.-++.
T Consensus       371 eNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  371 ENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CCcCccCCCCcchhhhcceeeecc
Confidence            997653333222222456655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-32  Score=285.57  Aligned_cols=319  Identities=27%  Similarity=0.329  Sum_probs=268.0

Q ss_pred             CcEEEEECCCCCCCCCCCc-eeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 047152           83 GHVNKLDLQPIGFDSFPLR-GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS  161 (776)
Q Consensus        83 ~~v~~L~L~~~~~~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  161 (776)
                      .-|+.+|+++     +.++ +.+|.....++.++.|.|.+..+.  .+|+.++.+.+|++|.+++|++. .+-..++.++
T Consensus         7 pFVrGvDfsg-----NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp   78 (1255)
T KOG0444|consen    7 PFVRGVDFSG-----NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP   78 (1255)
T ss_pred             ceeecccccC-----CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence            3688999999     6677 578999999999999999999998  68999999999999999999998 6667889999


Q ss_pred             CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCc
Q 047152          162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSL  241 (776)
Q Consensus       162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L  241 (776)
                      .|+.+++.+|++...+.|..+.++..|..||||+|++..   .|..+...+++-+|+|++|++..+.-..+.++   ..|
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL---tDL  152 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL---TDL  152 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCchHHHhh---HhH
Confidence            999999999999888899999999999999999999998   46788889999999999999988777777888   889


Q ss_pred             cEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEec
Q 047152          242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYL  319 (776)
Q Consensus       242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~L  319 (776)
                      -+||||+|++. .+|+.+..+..  |+.|.|++|.+.-.--..+..++.|+.|.+++.+-+-  +|.++..+.+|..+++
T Consensus       153 LfLDLS~NrLe-~LPPQ~RRL~~--LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  153 LFLDLSNNRLE-MLPPQIRRLSM--LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hhhccccchhh-hcCHHHHHHhh--hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            99999999987 67888888888  9999999998765444456677888889998876544  8999999999999999


Q ss_pred             cCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc
Q 047152          320 SGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN  399 (776)
Q Consensus       320 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N  399 (776)
                      |.|.+. ..|..+-.++      +|+.|+|++|+++..-...+...+|++|++|.|+++ .+|..+.++++|+.|.+.+|
T Consensus       230 S~N~Lp-~vPecly~l~------~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  230 SENNLP-IVPECLYKLR------NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             cccCCC-cchHHHhhhh------hhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence            999886 5677777777      888999999988866555677778888888888888 77888888888888888888


Q ss_pred             ccccc-ccHHhhhCCCCCcEEECCCCccc
Q 047152          400 SLGGV-ISEALFSNLSRLAALDLADNSLT  427 (776)
Q Consensus       400 ~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~  427 (776)
                      +++-. +|. .++.+.+|+.+...+|.+.
T Consensus       302 kL~FeGiPS-GIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  302 KLTFEGIPS-GIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             cccccCCcc-chhhhhhhHHHHhhccccc
Confidence            87632 343 4666666666666666554

>PLN03210 Resistant to P

Probab=99.88  E-value=2.1e-21  Score=236.80  Aligned_cols=304  Identities=22%  Similarity=0.252  Sum_probs=176.8

Q ss_pred             CccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152          343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA  422 (776)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  422 (776)
                      +|+.|++.++.+...+..+ ...+|+.|++++|++. .++..+..+++|+.|+++++...+.+|.  +..+++|++|+++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence            4555555555544222222 3445555555555554 3444445555555555555443334442  4445555555555


Q ss_pred             CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152          423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG  502 (776)
Q Consensus       423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~  502 (776)
                      +|.....+|..+..+.+|+.|++++|...+.+|..+            .+.+|+.|++++|...+.+|..    ...++.
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i------------~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~  729 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI------------NLKSLYRLNLSGCSRLKSFPDI----STNISW  729 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC------------CCCCCCEEeCCCCCCccccccc----cCCcCe
Confidence            554444445555555555555555554333333221            1234555555555444444331    112245


Q ss_pred             EeccCCcccccCCCC--CCCCcEEEccCCccc-------cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEe
Q 047152          503 IDISSNHFEGPIPPL--PSNATSLNLSKNKFS-------GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN  573 (776)
Q Consensus       503 l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  573 (776)
                      +++++|.+.. +|..  +++|++|++.++...       ...+......++|+.|+|++|...+.+|..++++++|+.|+
T Consensus       730 L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~  808 (1153)
T PLN03210        730 LDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE  808 (1153)
T ss_pred             eecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence            5555555432 3332  456666666653221       11222233356788888888887778888888888899999


Q ss_pred             ccCCcccccCCccccccCCCcEEecCCCcccc-cccccccccEEEccCCCCccCCchhhhccccCCEEECcCC-cccCcC
Q 047152          574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE-YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRN-NLTGQI  651 (776)
Q Consensus       574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~  651 (776)
                      +++|...+.+|..+ .+++|+.|+++++.... +.....+++.|+|++|.++ .+|..++.+++|+.|+|++| +++ .+
T Consensus       809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l  885 (1153)
T PLN03210        809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RV  885 (1153)
T ss_pred             CCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-cc
Confidence            98886666777765 67888888887754332 2334467788888888887 67878888888888888874 444 57


Q ss_pred             cccccCcCCCCeeeCcCce
Q 047152          652 TPKIGQLKSLDFLDLSRNQ  670 (776)
Q Consensus       652 p~~l~~l~~L~~L~Ls~N~  670 (776)
                      |..+..+++|+.|++++|.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcccccccCCCeeecCCCc
Confidence            7777788888888888774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=3.6e-24  Score=212.27  Aligned_cols=293  Identities=24%  Similarity=0.263  Sum_probs=198.1

Q ss_pred             EeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC-
Q 047152          117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL-  195 (776)
Q Consensus       117 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~-  195 (776)
                      .|-++-.++  ++|..+.  ..-..++|..|+|+...|.+|+.+++|+.||||+|+|.. ..++.|.++++|..|-+.+ 
T Consensus        51 VdCr~~GL~--eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT--EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc--cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcC
Confidence            344444555  4666554  466788899999997667789999999999999999876 6677788887777776655 


Q ss_pred             CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152          196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN  275 (776)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n  275 (776)
                      |+|+.++.  ..|+++.+|+.|.+.-|++.......|..+   ++|..|.+..|.+.                       
T Consensus       126 NkI~~l~k--~~F~gL~slqrLllNan~i~Cir~~al~dL---~~l~lLslyDn~~q-----------------------  177 (498)
T KOG4237|consen  126 NKITDLPK--GAFGGLSSLQRLLLNANHINCIRQDALRDL---PSLSLLSLYDNKIQ-----------------------  177 (498)
T ss_pred             Cchhhhhh--hHhhhHHHHHHHhcChhhhcchhHHHHHHh---hhcchhcccchhhh-----------------------
Confidence            77777542  556666666666666666666555665555   55555555555443                       


Q ss_pred             ccccCcchhhcCCCCCCEEEccCCCCCC---C----------chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCC
Q 047152          276 QLQGSIPEAFGRMVSLRYLDLSSNELRG---I----------PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN  342 (776)
Q Consensus       276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~---i----------p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~  342 (776)
                         ..-...|..+..++.+.+..|.+..   +          |..++..+...-..+.+.++..+.+..|..-     ..
T Consensus       178 ---~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-----~e  249 (498)
T KOG4237|consen  178 ---SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-----LE  249 (498)
T ss_pred             ---hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-----HH
Confidence               2222245555555555555554221   1          2222333333333333444433333333221     01


Q ss_pred             CccEEEcccccccccCCC--ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEE
Q 047152          343 SLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALD  420 (776)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  420 (776)
                      .+..=..+.+...+.-|.  |..+++|++|++++|++++.-+.+|.....+++|.|..|++. .+....|.++..|+.|+
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeee
Confidence            222222334444445555  899999999999999999999999999999999999999995 55556899999999999


Q ss_pred             CCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152          421 LADNSLTLEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       421 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      |++|+|+...|..|.....|.++.+-.|.+-
T Consensus       329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             ecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999999999999999999999888764

>PLN03210 Resistant to P

Probab=99.88  E-value=3e-21  Score=235.40  Aligned_cols=320  Identities=22%  Similarity=0.240  Sum_probs=188.3

Q ss_pred             cchhhcCCC-CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC
Q 047152          281 IPEAFGRMV-SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP  359 (776)
Q Consensus       281 ~p~~l~~l~-~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~  359 (776)
                      +|..|..++ +|+.|++.++.+..+|..+ ...+|++|++.+|.+.. ++..+..++      +|+.|+|+++...+.+|
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~------~Lk~L~Ls~~~~l~~ip  651 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLT------GLRNIDLRGSKNLKEIP  651 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-cccccccCC------CCCEEECCCCCCcCcCC
Confidence            444444443 4666666666666666555 34566666666665543 233333444      56666666655444555


Q ss_pred             CccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCC
Q 047152          360 NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ  439 (776)
Q Consensus       360 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  439 (776)
                      .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.. + ++++|+.|++++|......|..   ..+
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~---~~n  726 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDI---STN  726 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccc---cCC
Confidence            5566666666666665554555666666666666666665443444441 1 4556666666665433333221   234


Q ss_pred             CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCC
Q 047152          440 LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPS  519 (776)
Q Consensus       440 L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~  519 (776)
                      |+.|++++|.+. .+|..+            .+++|..|++.++.... ++. ..             ..+.......++
T Consensus       727 L~~L~L~~n~i~-~lP~~~------------~l~~L~~L~l~~~~~~~-l~~-~~-------------~~l~~~~~~~~~  778 (1153)
T PLN03210        727 ISWLDLDETAIE-EFPSNL------------RLENLDELILCEMKSEK-LWE-RV-------------QPLTPLMTMLSP  778 (1153)
T ss_pred             cCeeecCCCccc-cccccc------------cccccccccccccchhh-ccc-cc-------------cccchhhhhccc
Confidence            555555555542 222211            12234444443322110 000 00             000000111246


Q ss_pred             CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152          520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY  599 (776)
Q Consensus       520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  599 (776)
                      +|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   ..+|++|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            78888888887777778888888888888888876555777665 6788888888887665555543   3578888888


Q ss_pred             CCcccccc---cccccccEEEccCC-CCccCCchhhhccccCCEEECcCCc
Q 047152          600 NRSQYEYK---STLGLVKILDLSSN-KLGGGVPKEIMDLVGLVALNLSRNN  646 (776)
Q Consensus       600 ~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~  646 (776)
                      ++.+.+++   ..+++|+.|++++| ++. .+|..+..++.|+.+++++|.
T Consensus       855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            76655443   46788899999985 455 688889999999999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=5.4e-24  Score=211.05  Aligned_cols=369  Identities=25%  Similarity=0.287  Sum_probs=236.5

Q ss_pred             CCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc-ccccccCCC-ccCCC
Q 047152          289 VSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS-NEITGSMPN-LGEFS  365 (776)
Q Consensus       289 ~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~-n~l~~~~~~-l~~l~  365 (776)
                      +.-..++|..|+|+.|| ..|+.+++|+.|+|++|.|+.+.|..|..++      +|.+|-+.+ |+|+..... |+++.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHH
Confidence            35677888888888877 4688888888888888888888888888887      665555555 777755444 88888


Q ss_pred             CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCC-CCcEEE
Q 047152          366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTIS  444 (776)
Q Consensus       366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~  444 (776)
                      +|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...|..+..++.+.+..|.+.....-.|..-. ......
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            8888888888888777777888888888888888774 55555677788888888877774322111110000 000000


Q ss_pred             ccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCccccc-ccCCCCeEeccCCcccccCCC----CCC
Q 047152          445 LGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLR-FDISGPGIDISSNHFEGPIPP----LPS  519 (776)
Q Consensus       445 l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~-~~~~l~~l~l~~n~l~g~~p~----~~~  519 (776)
                      .++-  .-..|..+                      .++++...-+. .+. ....+..-..+.+...+..|.    .++
T Consensus       220 tsga--rc~~p~rl----------------------~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  220 TSGA--RCVSPYRL----------------------YYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLP  274 (498)
T ss_pred             cccc--eecchHHH----------------------HHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence            0000  00111111                      11111100000 000 000000001111222223332    267


Q ss_pred             CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152          520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY  599 (776)
Q Consensus       520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  599 (776)
                      +|++|++++|+++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            88899999999998888888888899999999999887667778888899999999999988888888888888888875


Q ss_pred             CCccc---------ccc-----------cccccccEEEccCCCCc---cCCchhhhc------------------c----
Q 047152          600 NRSQY---------EYK-----------STLGLVKILDLSSNKLG---GGVPKEIMD------------------L----  634 (776)
Q Consensus       600 ~~~~~---------~~~-----------~~l~~L~~L~Ls~N~l~---~~~p~~l~~------------------l----  634 (776)
                      .++..         ++.           .....++.++++.+.+.   ...|++.+-                  +    
T Consensus       355 ~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~  434 (498)
T KOG4237|consen  355 SNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL  434 (498)
T ss_pred             cCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccc
Confidence            52210         000           01233455555544332   122222211                  0    


Q ss_pred             ---------ccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          635 ---------VGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       635 ---------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                               ..-.+|++.+|.++ .+|.+  .+.+| .+|+++|+++...-..|.++++|.+|-+|||
T Consensus       435 lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence                     12356888899988 67776  67788 8999999998777788889999999998887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.7e-21  Score=217.39  Aligned_cols=159  Identities=30%  Similarity=0.326  Sum_probs=112.8

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      +.|++++|++++ +|..+.+|+.|++++|++++. |..   ..+|++|+|++|+|+ .+|..   ..+|+.|++++|+++
T Consensus       305 ~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        305 QELSVSDNQLAS-LPALPSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT  375 (788)
T ss_pred             ceeECCCCcccc-CCCCcccccccccccCccccc-ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc
Confidence            333444444433 333345677888888888753 321   246888888888888 45543   346778888888887


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      + +|...                       ..|+.|++++|+|+ .+|..   .++|+.|++++|+++ .+|..   ..+
T Consensus       376 ~-LP~l~-----------------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~  423 (788)
T PRK15387        376 S-LPALP-----------------------SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSG  423 (788)
T ss_pred             c-Ccccc-----------------------cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhh
Confidence            3 55421                       23478899999998 46643   357889999999998 47754   356


Q ss_pred             CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      |+.|++++|+++ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            788999999998 7898899999999999999999987764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3e-21  Score=218.07  Aligned_cols=132  Identities=28%  Similarity=0.348  Sum_probs=102.4

Q ss_pred             CCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152          514 IPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI  593 (776)
Q Consensus       514 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  593 (776)
                      +|..+.+|+.|++++|+|++.. ..   .++|+.|++++|+++ .+|..   ..+|+.|++++|++++ +|...   +  
T Consensus       337 LP~lp~~Lq~LdLS~N~Ls~LP-~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s--  402 (788)
T PRK15387        337 LPTLPSGLQELSVSDNQLASLP-TL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVLP---S--  402 (788)
T ss_pred             ccccccccceEecCCCccCCCC-CC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCcc---c--
Confidence            3333467888999999888643 22   357888999999998 46654   3579999999999984 55422   2  


Q ss_pred             cEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee
Q 047152          594 RSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG  673 (776)
Q Consensus       594 ~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  673 (776)
                                        .|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..++++++|+.|+|++|++++
T Consensus       403 ------------------~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        403 ------------------ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ------------------CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence                              3478899999998 477543   46788999999998 789999999999999999999999


Q ss_pred             cCCccCcCC
Q 047152          674 GIPSSLSQL  682 (776)
Q Consensus       674 ~~p~~l~~l  682 (776)
                      .+|..+..+
T Consensus       460 ~~~~~L~~l  468 (788)
T PRK15387        460 RTLQALREI  468 (788)
T ss_pred             hHHHHHHHH
Confidence            888877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.7e-18  Score=195.80  Aligned_cols=298  Identities=21%  Similarity=0.261  Sum_probs=148.9

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCCCCCccc----------------eeeCCCCCcEEEEECCCC
Q 047152           33 KTRCIDEEREALLTFKASLVDES---GILSSWRREDEKRDCCKWTG----------------VGCSKRTGHVNKLDLQPI   93 (776)
Q Consensus        33 ~~~~~~~~~~~ll~~k~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~   93 (776)
                      .....++|...+++..+.+..|.   ..-+.|.   ...+.|.-+.                |.|.  .+.|+.+...+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~  131 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTES  131 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccc
Confidence            44456788899999999887664   2344587   3667775443                5564  345666665552


Q ss_pred             CCCCC-----CC---------------cee---ccccc-----cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecC
Q 047152           94 GFDSF-----PL---------------RGK---ITPAL-----LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLS  145 (776)
Q Consensus        94 ~~~~~-----~l---------------~g~---~~~~l-----~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls  145 (776)
                      .....     ..               .+.   -..++     +-..+...|+++++.++  .+|..+.  ++|++|+|+
T Consensus       132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls  207 (754)
T PRK15370        132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILD  207 (754)
T ss_pred             cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEec
Confidence            10000     00               000   00001     11234566777776666  3555443  467777777


Q ss_pred             CCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCC
Q 047152          146 SAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP  225 (776)
Q Consensus       146 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  225 (776)
                      +|+++ .+|..+.  .+|++|++++|++..  .+..+.  .+|+.|++++|.+..++   ..+.  ++|++|++++|++.
T Consensus       208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP---~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        208 NNELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELP---ERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             CCCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCC---hhHh--CCCCEEECcCCccC
Confidence            77766 4555443  467777777766652  222222  35666666666666532   2222  35666666666655


Q ss_pred             CCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc
Q 047152          226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP  305 (776)
Q Consensus       226 ~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip  305 (776)
                      . +|..+.     ++|+.|++++|++++ +|..+.  ..  ++.|++++|+++. +|..+  .++|+.|++++|.++.+|
T Consensus       276 ~-LP~~l~-----~sL~~L~Ls~N~Lt~-LP~~lp--~s--L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP  341 (754)
T PRK15370        276 C-LPENLP-----EELRYLSVYDNSIRT-LPAHLP--SG--ITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLP  341 (754)
T ss_pred             c-cccccC-----CCCcEEECCCCcccc-Ccccch--hh--HHHHHhcCCcccc-CCccc--cccceeccccCCccccCC
Confidence            3 333221     355666666665553 232221  12  5555555555553 23222  134555555555555555


Q ss_pred             hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCcccc
Q 047152          306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN  378 (776)
Q Consensus       306 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~  378 (776)
                      ..+.  ++|+.|++++|.++. +|..+.  +      +|++|++++|.++..++.+.  ..|+.|++++|+++
T Consensus       342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~------~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        342 ASLP--PELQVLDVSKNQITV-LPETLP--P------TITTLDVSRNALTNLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             hhhc--CcccEEECCCCCCCc-CChhhc--C------CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc
Confidence            4332  345555555555442 222221  1      45555555555543322221  23444455555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.4e-18  Score=196.15  Aligned_cols=252  Identities=25%  Similarity=0.351  Sum_probs=191.0

Q ss_pred             eeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc
Q 047152           76 VGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPH  155 (776)
Q Consensus        76 v~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  155 (776)
                      ..|..  ...+.|++++     ..+. .+|..+.  ++|+.|+|++|.++  .+|..+.  .+|++|++++|+++ .+|.
T Consensus       173 ~~Cl~--~~~~~L~L~~-----~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~Lt-sLP~  237 (754)
T PRK15370        173 RDCLK--NNKTELRLKI-----LGLT-TIPACIP--EQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLT-SIPA  237 (754)
T ss_pred             Hhhcc--cCceEEEeCC-----CCcC-cCCcccc--cCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccc-cCCh
Confidence            35532  4568899988     4444 3454443  57999999999999  4777664  59999999999998 6787


Q ss_pred             cCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcC
Q 047152          156 QLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNL  235 (776)
Q Consensus       156 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  235 (776)
                      .+.  .+|+.|+|++|++.  ..+..+.  ++|+.|++++|+++.++   ..+.  ++|++|++++|++++. |..+.  
T Consensus       238 ~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP---~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--  303 (754)
T PRK15370        238 TLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLP---ENLP--EELRYLSVYDNSIRTL-PAHLP--  303 (754)
T ss_pred             hhh--ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccc---cccC--CCCcEEECCCCccccC-cccch--
Confidence            654  57999999999987  3444443  58999999999998753   3332  5899999999999864 43332  


Q ss_pred             CCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCc
Q 047152          236 NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLK  315 (776)
Q Consensus       236 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~  315 (776)
                         ++|+.|++++|+++. +|..+.  ++  |+.|++++|.+++ +|..+.  ++|+.|++++|+++.+|..+.  ++|+
T Consensus       304 ---~sL~~L~Ls~N~Lt~-LP~~l~--~s--L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~  370 (754)
T PRK15370        304 ---SGITHLNVQSNSLTA-LPETLP--PG--LKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLP--PTIT  370 (754)
T ss_pred             ---hhHHHHHhcCCcccc-CCcccc--cc--ceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhc--CCcC
Confidence               578999999999985 454332  35  9999999999986 666553  799999999999999987664  6899


Q ss_pred             EEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcccc
Q 047152          316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNLLN  378 (776)
Q Consensus       316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~  378 (776)
                      +|++++|.++.. |..+..        .|+.|++++|++++.+..    ...++.+..|++.+|.++
T Consensus       371 ~LdLs~N~Lt~L-P~~l~~--------sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        371 TLDVSRNALTNL-PENLPA--------ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             EEECCCCcCCCC-CHhHHH--------HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            999999999965 444432        699999999999854322    334567778888888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1e-18  Score=185.61  Aligned_cols=60  Identities=27%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             CCCCEEeccCccccc----cchhcccCCCCCcEEECCCcccccc----ccHHhhhCC-CCCcEEECCCCc
Q 047152          365 SSLKQLNLENNLLNG----TIHKSIGQLFKLEMLKLNGNSLGGV----ISEALFSNL-SRLAALDLADNS  425 (776)
Q Consensus       365 ~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~l-~~L~~L~Ls~n~  425 (776)
                      +.|+.|++++|.+++    .+...+..+++|+++++++|.++..    +.. .+... +.|+++++.+|.
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCC
Confidence            566666666666652    2233444556677777777776533    222 12222 566777766664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=7.1e-18  Score=179.08  Aligned_cols=259  Identities=27%  Similarity=0.259  Sum_probs=135.7

Q ss_pred             EEecCCCCCCC-CCCccCCCCCCCCEEeccCCCCCCC---CCchhhccCCCCcEEEccCCCCCCc----chhhHhhcCCC
Q 047152          141 YLGLSSAEFAG-PIPHQLGNLSRLQFLDLSFNNLFSG---ENLDWLSHLSSLIYLYLDLNDLSNF----SNWVQLLSKLH  212 (776)
Q Consensus       141 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~l~~l~  212 (776)
                      .|+|..+.+++ ..+..+..+.+|++|+++++.+...   .....+...++|++|+++++.+...    ..++..+.+++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            46666666663 3334455666677777777766431   1122345556677777766665521    12234455566


Q ss_pred             CCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCC-CCC
Q 047152          213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRM-VSL  291 (776)
Q Consensus       213 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L  291 (776)
                      +|++|++++|.+.+..+..+..+...++|++|++++|++.+.....                      +...+..+ ++|
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~----------------------l~~~l~~~~~~L  139 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL----------------------LAKGLKDLPPAL  139 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH----------------------HHHHHHhCCCCc
Confidence            6666666666665555555444411123666666666554321111                      11222333 445


Q ss_pred             CEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCcc----chHHhhccCCCcCCCccEEEcccccccccCC---
Q 047152          292 RYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQL----SEFIQDLSSGCTKNSLEWLHLSSNEITGSMP---  359 (776)
Q Consensus       292 ~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~---  359 (776)
                      +.|++++|.+++     ++..+..+++|++|++++|.+++..    +..+...+      +|++|++++|.+++...   
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~------~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC------NLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC------CCCEEeccCCccChHHHHHH
Confidence            555555555442     2233444445555555555554321    11222222      55556665555543221   


Q ss_pred             --CccCCCCCCEEeccCccccccchhccc-----CCCCCcEEECCCcccccc----ccHHhhhCCCCCcEEECCCCccce
Q 047152          360 --NLGEFSSLKQLNLENNLLNGTIHKSIG-----QLFKLEMLKLNGNSLGGV----ISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       360 --~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                        .+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++..    +.. .+..+++|+++++++|.++.
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCCCcH
Confidence              144567777777777777753333222     236788888888877521    112 34555778888888877763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-18  Score=153.09  Aligned_cols=155  Identities=30%  Similarity=0.459  Sum_probs=92.6

Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEec
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL  598 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  598 (776)
                      .+++.|.+++|+++...| .+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|++. ..|..|+.++.|     
T Consensus        33 s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l-----  104 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL-----  104 (264)
T ss_pred             hhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-----
Confidence            455666677777664443 3445667777777777776 66777777777777777777766 667777766666     


Q ss_pred             CCCcccccccccccccEEEccCCCCcc-CCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152          599 YNRSQYEYKSTLGLVKILDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS  677 (776)
Q Consensus       599 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  677 (776)
                                     ++|||++|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|.
T Consensus       105 ---------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen  105 ---------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             ---------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence                           445555555432 34555555555555555555555 45555555555555555555554 4555


Q ss_pred             cCcCCCCCCeeeCCCCcceec
Q 047152          678 SLSQLSGLSVMDLSYNNLSGK  698 (776)
Q Consensus       678 ~l~~l~~L~~L~ls~N~l~g~  698 (776)
                      +++.+++|+.|.+.+|+++-.
T Consensus       168 eig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             HHHHHHHHHHHhcccceeeec
Confidence            555555555555555555533

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=8.9e-18  Score=148.19  Aligned_cols=166  Identities=26%  Similarity=0.447  Sum_probs=97.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +.++.+++.|.||+|.++  .+|..+..+.+|++|++++|+++ .+|.+++.+++|++|+++-|++.  ..|..|+.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCch
Confidence            455667777777777777  36677777777777777777777 67777777777777777766654  34444555555


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |+.|||.+|++...                         ..|..|..+   +.|+.|+++.|.+. .+|+.++++++  |
T Consensus       104 levldltynnl~e~-------------------------~lpgnff~m---~tlralyl~dndfe-~lp~dvg~lt~--l  152 (264)
T KOG0617|consen  104 LEVLDLTYNNLNEN-------------------------SLPGNFFYM---TTLRALYLGDNDFE-ILPPDVGKLTN--L  152 (264)
T ss_pred             hhhhhccccccccc-------------------------cCCcchhHH---HHHHHHHhcCCCcc-cCChhhhhhcc--e
Confidence            55555554444331                         233334444   44555555555543 34444555555  5


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcc
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGN  310 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~  310 (776)
                      +.|.+.+|.+. ..|..++.++.|++|++.+|+++-+|..+++
T Consensus       153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             eEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            55555555544 3455555556666666666665555555444

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=3.8e-14  Score=161.67  Aligned_cols=152  Identities=33%  Similarity=0.467  Sum_probs=122.4

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----CccceeeCC--CC--CcEEEEECCCCCCCCCCCceec
Q 047152           33 KTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCC----KWTGVGCSK--RT--GHVNKLDLQPIGFDSFPLRGKI  104 (776)
Q Consensus        33 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~l~g~~  104 (776)
                      ...+.++|..||+++|+++.++..  .+|.    +..||    .|.||.|..  ..  .+|+.|+|++     +.+.|.+
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~i  434 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFI  434 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccC
Confidence            345677899999999999976542  4796    33442    799999952  22  2599999998     7889999


Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152          105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH  184 (776)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~  184 (776)
                      |..++++++|++|+|++|.+.|. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|++.+ ..|..++.
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~  512 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG-RVPAALGG  512 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc-cCChHHhh
Confidence            99999999999999999999986 99999999999999999999999999999999999999999999875 44555543


Q ss_pred             C-CCCcEEEccCCC
Q 047152          185 L-SSLIYLYLDLND  197 (776)
Q Consensus       185 l-~~L~~L~Ls~n~  197 (776)
                      . .++..+++.+|.
T Consensus       513 ~~~~~~~l~~~~N~  526 (623)
T PLN03150        513 RLLHRASFNFTDNA  526 (623)
T ss_pred             ccccCceEEecCCc
Confidence            2 345556655553

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=2.5e-14  Score=163.05  Aligned_cols=117  Identities=38%  Similarity=0.672  Sum_probs=106.1

Q ss_pred             ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152          613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY  692 (776)
Q Consensus       613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  692 (776)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCC--CcccccccccccCCCCCCCCCCCCCCC
Q 047152          693 NNLSGKIPLG--TQLQSFNELVYAGNPELCGLPLRNKCP  729 (776)
Q Consensus       693 N~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~l~~~c~  729 (776)
                      |+++|.+|..  ..+..+..+.+.+|+++|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999975  222344567899999999987656673

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.24  E-value=4.6e-13  Score=132.41  Aligned_cols=254  Identities=28%  Similarity=0.304  Sum_probs=126.7

Q ss_pred             ccccCCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCccC-------CCCCCCCEEeccCC
Q 047152          106 PALLKLQHLTYLDLSRNNFSGS---SIPEFLGSLGKLSYLGLSSAEFAG----PIPHQL-------GNLSRLQFLDLSFN  171 (776)
Q Consensus       106 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l-------~~l~~L~~L~Ls~n  171 (776)
                      +.+..+..+++++||+|.|...   .+...+.+.++|+..++|+- ++|    .+|..+       -..++|++||||.|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            4456677778888888877532   12334566677777777753 333    344332       23445566666655


Q ss_pred             CCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCC
Q 047152          172 NLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNL  251 (776)
Q Consensus       172 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l  251 (776)
                      .+.. .                      +++.+...+..++.|++|.|.+|.+...-...++.     -|..|.  .++.
T Consensus       103 A~G~-~----------------------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-----al~~l~--~~kk  152 (382)
T KOG1909|consen  103 AFGP-K----------------------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-----ALFELA--VNKK  152 (382)
T ss_pred             ccCc-c----------------------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-----HHHHHH--HHhc
Confidence            5532 1                      12223344555666666666666554332222221     011110  1111


Q ss_pred             CCCchhhHhhcCCCCcCEEEccCCccccC----cchhhcCCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCC
Q 047152          252 TNSVYPWLFNVSSSLVDRISLPSNQLQGS----IPEAFGRMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       252 ~~~~~~~l~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n  322 (776)
                      .+..       ++  |+++...+|++...    +...|...+.|+.+.++.|.|..     +...+..+++|++|||.+|
T Consensus       153 ~~~~-------~~--Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN  223 (382)
T KOG1909|consen  153 AASK-------PK--LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN  223 (382)
T ss_pred             cCCC-------cc--eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence            1111       11  44444444444322    23345556667777777776654     2345666777777777777


Q ss_pred             cCCCccchHHhhccCCCcCCCccEEEcccccccccCCC------ccCCCCCCEEeccCcccccc----chhcccCCCCCc
Q 047152          323 ELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN------LGEFSSLKQLNLENNLLNGT----IHKSIGQLFKLE  392 (776)
Q Consensus       323 ~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~  392 (776)
                      .++......++..-  +.+++|++|++++|.+......      -...++|++|.+.+|.++..    +...+...+.|+
T Consensus       224 tft~egs~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  224 TFTLEGSVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             hhhhHHHHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence            76654433333211  1223566666666655532221      12345666666666665531    122233455666


Q ss_pred             EEECCCccc
Q 047152          393 MLKLNGNSL  401 (776)
Q Consensus       393 ~L~L~~N~l  401 (776)
                      .|+|++|++
T Consensus       302 kLnLngN~l  310 (382)
T KOG1909|consen  302 KLNLNGNRL  310 (382)
T ss_pred             HhcCCcccc
Confidence            666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=3.2e-12  Score=129.85  Aligned_cols=217  Identities=25%  Similarity=0.271  Sum_probs=134.0

Q ss_pred             CCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCC
Q 047152          158 GNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNS  237 (776)
Q Consensus       158 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  237 (776)
                      +++++|+...|.++.+...+.-.....|++++.|||+.|-+.....+......+++|+.|+|+.|++..........  .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--L  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--h
Confidence            46778888888777764322224667788888888888888887777777888899999999988876544332222  1


Q ss_pred             CCCccEEEcCCCCCCCCchh-hHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCC
Q 047152          238 SNSLEVIDLTENNLTNSVYP-WLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGL  314 (776)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L  314 (776)
                      +++|+.|.++.|.++..... .+...++  ++.|++..|............+..|+.|||++|++-..+  ...+.++.|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPs--l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPS--LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCc--HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            27888888888888743222 2345566  888888888644444445556777888888888887755  456777778


Q ss_pred             cEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccc--cCCCccCCCCCCEEeccCcccc
Q 047152          315 KILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG--SMPNLGEFSSLKQLNLENNLLN  378 (776)
Q Consensus       315 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~Ls~n~l~  378 (776)
                      ..|+++.+.+...--...........+++|+.|++..|++..  ....+..+++|+.|.+..|.++
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            888877777654211111000000112255555555555531  1111334444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=7e-13  Score=138.58  Aligned_cols=167  Identities=31%  Similarity=0.443  Sum_probs=125.3

Q ss_pred             eEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCc
Q 047152          502 GIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN  578 (776)
Q Consensus       502 ~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  578 (776)
                      ..|++.|++.. +|..   +..|+.+.+..|.+. .+|.....+..|.++||+.|+++ .+|..++.++ |+.|-+++|+
T Consensus        79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            34555555542 2222   445666777777776 45556666788888888888887 7777777775 8888888888


Q ss_pred             ccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCc
Q 047152          579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQL  658 (776)
Q Consensus       579 l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  658 (776)
                      ++ .+|..++.+..|                    ..||.+.|.+. .+|..++++.+|+.|++..|++. ..|+++..|
T Consensus       155 l~-~lp~~ig~~~tl--------------------~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L  211 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTL--------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL  211 (722)
T ss_pred             cc-cCCcccccchhH--------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence            87 677777755555                    66788888887 67888888888888888888888 577777755


Q ss_pred             CCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCccee
Q 047152          659 KSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG  697 (776)
Q Consensus       659 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  697 (776)
                       .|..||+|+|+++ .||-.|.+|..|++|-|.+|+|+-
T Consensus       212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence             4788888888888 788888888888888888888874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=5.9e-11  Score=129.76  Aligned_cols=177  Identities=34%  Similarity=0.453  Sum_probs=127.6

Q ss_pred             CCCcEEEccCCccccCCCccccCCC-CccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSN-RLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      ..++.|++.+|.++...+. ..... +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            3566666666666654443 22232 6777777777776 55556667777777777777776 4555455666777777


Q ss_pred             cCCCccccccc---ccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeec
Q 047152          598 LYNRSQYEYKS---TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG  674 (776)
Q Consensus       598 l~~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  674 (776)
                      ++++.+.....   ....|+++++++|++. .++..+..+..+..+.+++|++. .++..++.+++++.|++++|+++. 
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-  269 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-  269 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-
Confidence            77766666655   3344788999999654 57778889999999999999987 457888899999999999999984 


Q ss_pred             CCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152          675 IPSSLSQLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       675 ~p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      ++. +..+..++.|++++|.++...|..
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccc-ccccCccCEEeccCccccccchhh
Confidence            444 888899999999999998776654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2.4e-12  Score=134.64  Aligned_cols=123  Identities=27%  Similarity=0.358  Sum_probs=83.4

Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      |+.|-+++|+++ .+|+.++....|..||.+.|.+..+|..++.+.+|+.|.+..|++....+ .+..++       |..
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~-El~~Lp-------Li~  215 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSLP-------LIR  215 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCCc-------eee
Confidence            666777777766 46667777778888888888888888888888888888888887765443 344554       777


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC---CCcEEECCCc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF---KLEMLKLNGN  399 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~---~L~~L~L~~N  399 (776)
                      ||++.|+++..+-.|.+++.|++|-|.+|.+. ..|..++...   --++|+..-+
T Consensus       216 lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  216 LDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            77777777754444777777777777777776 4454443222   2344555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.1e-11  Score=126.17  Aligned_cols=211  Identities=25%  Similarity=0.231  Sum_probs=117.4

Q ss_pred             cCCCCCCEEecCCCCCCCCCC--ccCCCCCCCCEEeccCCCCCCCCC-chhhccCCCCcEEEccCCCCCCcchhhHhhcC
Q 047152          134 GSLGKLSYLGLSSAEFAGPIP--HQLGNLSRLQFLDLSFNNLFSGEN-LDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK  210 (776)
Q Consensus       134 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  210 (776)
                      .++++|+...|.++.+. ..+  .-...+++++.||||+|-+..... ......+++|+.|+++.|++..... ...-..
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhh
Confidence            34556666666666554 222  233456666666666665543111 1234556666666666666654211 011124


Q ss_pred             CCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCc-chhhcCC
Q 047152          211 LHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI-PEAFGRM  288 (776)
Q Consensus       211 l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l  288 (776)
                      ++.|+.|.|++|.++...- ..+..+   ++|+.|+|.+|............++.  |+.|+|++|++.... -...+.+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~f---Psl~~L~L~~N~~~~~~~~~~~i~~~--L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTF---PSLEVLYLEANEIILIKATSTKILQT--LQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhC---CcHHHhhhhcccccceecchhhhhhH--HhhccccCCcccccccccccccc
Confidence            5666777777776663222 112223   67777777777422222222223333  777777777765321 1346778


Q ss_pred             CCCCEEEccCCCCCC--Cchh-----hcccCCCcEEeccCCcCCCcc-chHHhhccCCCcCCCccEEEccccccccc
Q 047152          289 VSLRYLDLSSNELRG--IPKF-----LGNMCGLKILYLSGKELKGQL-SEFIQDLSSGCTKNSLEWLHLSSNEITGS  357 (776)
Q Consensus       289 ~~L~~L~L~~n~l~~--ip~~-----l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~~~~~~L~~L~L~~n~l~~~  357 (776)
                      +.|+.|.++.+.+..  +|+.     ...+++|++|++..|++.... ...+..+.      +|+.|....|.+...
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~------nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE------NLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc------hhhhhhccccccccc
Confidence            888888888888877  4443     456778888888888875321 11222333      677777777777643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=1.1e-10  Score=127.48  Aligned_cols=198  Identities=33%  Similarity=0.468  Sum_probs=107.8

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC-CCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS-RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      .++++.+.+..  -+..+..++.++.|++.+|.++ .+|.....+. +|++|++++|++.  ..+..++.+++|+.|+++
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh--hhhhhhhccccccccccC
Confidence            46666666532  2334445566777777777776 5565565563 7777777777664  222456666777777777


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                      +|++..+   +...+..+.|+.|++++|++....+. ....   ..|+++.+++|... ..+..+.++..  +..+.+.+
T Consensus       172 ~N~l~~l---~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~---~~L~~l~~~~N~~~-~~~~~~~~~~~--l~~l~l~~  241 (394)
T COG4886         172 FNDLSDL---PKLLSNLSNLNNLDLSGNKISDLPPE-IELL---SALEELDLSNNSII-ELLSSLSNLKN--LSGLELSN  241 (394)
T ss_pred             Cchhhhh---hhhhhhhhhhhheeccCCccccCchh-hhhh---hhhhhhhhcCCcce-ecchhhhhccc--ccccccCC
Confidence            7766663   33333566666666666666543322 1122   34566666666422 22333444444  44444555


Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccch
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSE  330 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~  330 (776)
                      |++.. ++..++.++++++|++++|.++.++. ++.+.+++.|++++|.+....+.
T Consensus       242 n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         242 NKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence            54442 13445555555555555555555544 55555555555555555544443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1.8e-10  Score=114.27  Aligned_cols=201  Identities=23%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCchhhhc-CCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhh
Q 047152          207 LLSKLHSLTTLSLYSCDLPPIIPSSLLN-LNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF  285 (776)
Q Consensus       207 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l  285 (776)
                      .+..+++|++|+||.|-+....+..+.. ++++..|++|.|.+|.+...--..++..    |..|.         .....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~---------~~kk~  153 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA---------VNKKA  153 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH---------HHhcc
Confidence            3445566667777766665544443332 2223556666666655542221122110    11111         11123


Q ss_pred             cCCCCCCEEEccCCCCCCC-----chhhcccCCCcEEeccCCcCCCcc----chHHhhccCCCcCCCccEEEcccccccc
Q 047152          286 GRMVSLRYLDLSSNELRGI-----PKFLGNMCGLKILYLSGKELKGQL----SEFIQDLSSGCTKNSLEWLHLSSNEITG  356 (776)
Q Consensus       286 ~~l~~L~~L~L~~n~l~~i-----p~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~L~~n~l~~  356 (776)
                      +.-++|+++...+|++..-     ...+...+.|+.+.++.|.|...-    ...+...+      +|+.|||.+|-++.
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~------~LevLdl~DNtft~  227 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP------HLEVLDLRDNTFTL  227 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC------cceeeecccchhhh
Confidence            4557788888888888763     345666778888888887765322    22333333      67777777776653


Q ss_pred             cCCC-----ccCCCCCCEEeccCccccccchhcc-----cCCCCCcEEECCCcccccccc---HHhhhCCCCCcEEECCC
Q 047152          357 SMPN-----LGEFSSLKQLNLENNLLNGTIHKSI-----GQLFKLEMLKLNGNSLGGVIS---EALFSNLSRLAALDLAD  423 (776)
Q Consensus       357 ~~~~-----l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~Ls~  423 (776)
                      ....     +..+++|++|++++|.+...-...+     ...++|++|.+.+|.++..-.   .......+.|..|++++
T Consensus       228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            2221     4555666666666666654322222     224566666666666542211   11233455666666666


Q ss_pred             Ccc
Q 047152          424 NSL  426 (776)
Q Consensus       424 n~l  426 (776)
                      |++
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.7e-10  Score=105.48  Aligned_cols=111  Identities=35%  Similarity=0.393  Sum_probs=35.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhh-ccC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWL-SHL  185 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l  185 (776)
                      +.+...+++|+|++|.|+.+   +.++ .+.+|++|||++|.++. ++ .+..+++|++|++++|++..  ..+.+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~--i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS--ISEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-
T ss_pred             cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc--cccchHHhC
Confidence            34445677777777777632   2344 46777777777777773 32 46667777777777777753  22233 357


Q ss_pred             CCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC
Q 047152          186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP  226 (776)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  226 (776)
                      ++|++|++++|++..... ...++.+++|++|++.+|.+..
T Consensus        88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence            777777777777766543 2455667777777777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=5.7e-10  Score=104.25  Aligned_cols=127  Identities=32%  Similarity=0.331  Sum_probs=59.3

Q ss_pred             cEEEEECCCCCCCCCCCceecccccc-CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccC-CCCC
Q 047152           84 HVNKLDLQPIGFDSFPLRGKITPALL-KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQL-GNLS  161 (776)
Q Consensus        84 ~v~~L~L~~~~~~~~~l~g~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~  161 (776)
                      +.+.|+|++     +.+.- + +.++ .+.+|+.|||++|.++.  ++ .+..+++|++|++++|+++ .++..+ ..++
T Consensus        20 ~~~~L~L~~-----n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   20 KLRELNLRG-----NQIST-I-ENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             ccccccccc-----ccccc-c-cchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            568899998     44432 2 2455 57899999999999985  43 5788999999999999999 454444 4689


Q ss_pred             CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcch-hhHhhcCCCCCCEEEccC
Q 047152          162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTLSLYS  221 (776)
Q Consensus       162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~L~~  221 (776)
                      +|++|++++|++........++.+++|++|++.+|.+...+. -...+..+|+|+.||-..
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999999999887788899999999999999999876543 234567888888886543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.7e-10  Score=111.51  Aligned_cols=132  Identities=25%  Similarity=0.296  Sum_probs=79.7

Q ss_pred             CCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCC
Q 047152          287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSS  366 (776)
Q Consensus       287 ~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~  366 (776)
                      ..+.|+++||++|.|+.+.++..-.+.++.|++++|.+.....  +..++      +|+.|||++|.++.....-..+.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~------~L~~LDLS~N~Ls~~~Gwh~KLGN  353 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELP------QLQLLDLSGNLLAECVGWHLKLGN  353 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcc------cceEeecccchhHhhhhhHhhhcC
Confidence            3455677777777777766666666777777777776654322  44444      667777777766644333344556


Q ss_pred             CCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152          367 LKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       367 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      ++.|.++.|.+...  ..+.++-+|..||+++|++...-.-..++++|.|+.+.+.+|.+.+
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            66666766666432  3455556666677777766533322345666666666666666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.7e-10  Score=126.16  Aligned_cols=198  Identities=33%  Similarity=0.339  Sum_probs=117.1

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL  188 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  188 (776)
                      ..+..++.++++.|.+..  +-..+..+++|++|++.+|++.. +...+..+++|++|++++|.|.   ....+..++.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~---~i~~l~~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT---KLEGLSTLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc---cccchhhccch
Confidence            345666777777777763  33456777888888888888873 3333667888888888888873   44556666668


Q ss_pred             cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152          189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD  268 (776)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~  268 (776)
                      +.|++++|.++.+.    .+..++.|+.+++++|++....+.....+   .+++.+++.+|.+....  .+.....  +.
T Consensus       143 ~~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~~~~~---~~l~~l~l~~n~i~~i~--~~~~~~~--l~  211 (414)
T KOG0531|consen  143 KELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIENDELSEL---ISLEELDLGGNSIREIE--GLDLLKK--LV  211 (414)
T ss_pred             hhheeccCcchhcc----CCccchhhhcccCCcchhhhhhhhhhhhc---cchHHHhccCCchhccc--chHHHHH--HH
Confidence            88888888877753    34447777777777777766544102333   66677777777664321  1222222  33


Q ss_pred             EEEccCCccccCcchhhcCCC--CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152          269 RISLPSNQLQGSIPEAFGRMV--SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      .+++..|.++..-+  +..+.  +|+.+++++|.+..++..+..+..+..+++..|.+.
T Consensus       212 ~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  212 LLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            33555555543211  11122  256666666666655444445555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=9.6e-10  Score=106.42  Aligned_cols=207  Identities=22%  Similarity=0.263  Sum_probs=119.3

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152          104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS  183 (776)
Q Consensus       104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  183 (776)
                      +|-.+.-+++|..+.+|.+.-..  +-+....-+.|+++...+..+.. .|. +--...+....-+.-....+.....+.
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecc
Confidence            34455566677777777664321  11111223456666665544432 111 111111111111111111111122344


Q ss_pred             cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcC
Q 047152          184 HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVS  263 (776)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~  263 (776)
                      ..+.|+++|||+|.++.+   -+++.-.|.++.|+++.|.+.....  ++.+   ++|+.|||++|.++. +..|-..+-
T Consensus       282 TWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~n--La~L---~~L~~LDLS~N~Ls~-~~Gwh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQN--LAEL---PQLQLLDLSGNLLAE-CVGWHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeehh--hhhc---ccceEeecccchhHh-hhhhHhhhc
Confidence            557788888888888764   3566777888888888888765322  4444   888888888887763 333444555


Q ss_pred             CCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCCcEEeccCCcCCCc
Q 047152          264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                      +  ++.|.|+.|.+...  ..++++-+|..||+++|+|..+.  ..+++++.|+++.|.+|.+.+.
T Consensus       353 N--IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  353 N--IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             C--EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5  77788887776532  34666777788888888777732  4567777777777777776654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=2.8e-09  Score=124.36  Aligned_cols=294  Identities=24%  Similarity=0.266  Sum_probs=151.2

Q ss_pred             CCCEEeCCCCC--CCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152          113 HLTYLDLSRNN--FSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY  190 (776)
Q Consensus       113 ~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  190 (776)
                      .|++|-+.+|.  +... .+.+|..++.|++|||++|.=-+.+|.++++|-+|++|++++..+.  ..|..+++++.|.+
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhe
Confidence            56666666664  3322 3345666777777777776655677777777777777777777765  56667777777777


Q ss_pred             EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC--CCcC
Q 047152          191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS--SLVD  268 (776)
Q Consensus       191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~--~~L~  268 (776)
                      |++..+.....  ++.....+++|++|.+...... .....+..+..+++|+.+.......  .+-..+..+..  ...+
T Consensus       623 Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  623 LNLEVTGRLES--IPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             ecccccccccc--ccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence            77776654332  2344555777777777554311 1112222222225555555533322  11111111111  0012


Q ss_pred             EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcc------cCCCcEEeccCCcCCCccchHHhhccCCCcC
Q 047152          269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGN------MCGLKILYLSGKELKGQLSEFIQDLSSGCTK  341 (776)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~  341 (776)
                      .+.+..+... ..+..+..+.+|+.|.+.++.+.++. .....      ++++..+...++..- ..+.+..-.      
T Consensus       698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~------  769 (889)
T KOG4658|consen  698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFA------  769 (889)
T ss_pred             hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhcc------
Confidence            2222222222 34456778888888888888876522 11111      112222222222111 111111122      


Q ss_pred             CCccEEEcccccccccCCC-ccCCCCCCEEeccCcccccc-chhcccCCCCCcEEECCCcccccc----ccHHhhhCCCC
Q 047152          342 NSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGT-IHKSIGQLFKLEMLKLNGNSLGGV----ISEALFSNLSR  415 (776)
Q Consensus       342 ~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~  415 (776)
                      ++|+.|.+..+.....+.. ...+..++.+.+..+.+.+. .-...+.++++..+.+..=.+...    .|.  ...+|.
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~--l~~~P~  847 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK--LGKLPL  847 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcc--cccCcc
Confidence            2888888888776654443 55566666666666666655 344455555555555544332211    121  344566


Q ss_pred             CcEEECCCC
Q 047152          416 LAALDLADN  424 (776)
Q Consensus       416 L~~L~Ls~n  424 (776)
                      +..+.+.++
T Consensus       848 ~~~~~i~~~  856 (889)
T KOG4658|consen  848 LSTLTIVGC  856 (889)
T ss_pred             ccccceecc
Confidence            666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=4.1e-09  Score=80.83  Aligned_cols=60  Identities=40%  Similarity=0.505  Sum_probs=36.9

Q ss_pred             cCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcc
Q 047152          636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL  695 (776)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  695 (776)
                      +|++|++++|+++...+..|..+++|++|++++|++....|..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666644445556666666666666666655556666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=5.7e-09  Score=121.89  Aligned_cols=205  Identities=23%  Similarity=0.214  Sum_probs=130.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC--CCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE--FAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS  186 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  186 (776)
                      ......|...+-+|.+..  ++.... .++|++|-+..|.  +....+..|..++.|++|||++|.-.. ..|..++.+-
T Consensus       520 ~~~~~~rr~s~~~~~~~~--~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li  595 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH--IAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELV  595 (889)
T ss_pred             cchhheeEEEEeccchhh--ccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhh
Confidence            344667778888887752  444333 4579999998886  443334457789999999999876433 7788899999


Q ss_pred             CCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC--CCCCchhhHhhcCC
Q 047152          187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN--LTNSVYPWLFNVSS  264 (776)
Q Consensus       187 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~  264 (776)
                      +||+|++++..+..   +|..++++++|.+|++..+.....+|.....+   ++|++|.+....  .....-..+.++.+
T Consensus       596 ~LryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L---~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  596 HLRYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIPGILLEL---QSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             hhhcccccCCCccc---cchHHHHHHhhheeccccccccccccchhhhc---ccccEEEeeccccccchhhHHhhhcccc
Confidence            99999999988876   67889999999999998887665566666666   888888886553  22223333444444


Q ss_pred             CCcCEEEccCCccccCcchhhcCCCCCC----EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc
Q 047152          265 SLVDRISLPSNQLQGSIPEAFGRMVSLR----YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                        |+.+.......  .+-..+..++.|.    .+.+..+.....+..+..+.+|+.|.+.++.+...
T Consensus       670 --L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  670 --LENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             --hhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence              44444432222  1111122233322    23323333333555667777777777777776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=5.9e-09  Score=79.94  Aligned_cols=61  Identities=39%  Similarity=0.488  Sum_probs=56.1

Q ss_pred             ccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCcee
Q 047152          611 GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF  671 (776)
Q Consensus       611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  671 (776)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678999999999977778999999999999999999987788999999999999999986

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.71  E-value=1.8e-08  Score=70.54  Aligned_cols=41  Identities=51%  Similarity=1.029  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCCccceeeC
Q 047152           38 DEEREALLTFKASLV-DESGILSSWRREDEKRDCCKWTGVGCS   79 (776)
Q Consensus        38 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~   79 (776)
                      ++|++||++||+++. +|.+.+.+|+... ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            679999999999998 5778999998411 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2e-09  Score=117.80  Aligned_cols=125  Identities=33%  Similarity=0.342  Sum_probs=75.4

Q ss_pred             CCCCEEeCCCCCCCCCCCCccc-cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchh-hccCCCCc
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFL-GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDW-LSHLSSLI  189 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~  189 (776)
                      +.++.++...+.+...   ..+ ..+..++.+++..|.+. .+-..+..+++|+.|++.+|++.   .+.. +..+++|+
T Consensus        49 ~~~~~~~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~---~i~~~l~~~~~L~  121 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSD---EDLVESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE---KIENLLSSLVNLQ  121 (414)
T ss_pred             chhhhhcchhccccch---hhhHHHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh---hcccchhhhhcch
Confidence            3445555555544321   122 45677777888888877 33445777888888888888874   3333 67788888


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCC
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT  252 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~  252 (776)
                      +|++++|.|+.+.    .+..++.|+.|++++|.+....-  +..+   ..|+.+++++|.+.
T Consensus       122 ~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~~~--~~~l---~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  122 VLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDISG--LESL---KSLKLLDLSYNRIV  175 (414)
T ss_pred             heecccccccccc----chhhccchhhheeccCcchhccC--Cccc---hhhhcccCCcchhh
Confidence            8888888887753    34455556666776666544211  1112   44555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=1.7e-08  Score=97.92  Aligned_cols=93  Identities=28%  Similarity=0.291  Sum_probs=65.9

Q ss_pred             CCCCCCCCEEeccCCCCCCCCCchhh-ccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcC
Q 047152          157 LGNLSRLQFLDLSFNNLFSGENLDWL-SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNL  235 (776)
Q Consensus       157 l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  235 (776)
                      +..+..++.|-+.++.|...+....| ...+.++.+||.+|.++....+...+.++|.|++|+++.|++...+...-..+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~  120 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL  120 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence            33344555666666666544444444 34678999999999999988888888999999999999999876543221223


Q ss_pred             CCCCCccEEEcCCCCCC
Q 047152          236 NSSNSLEVIDLTENNLT  252 (776)
Q Consensus       236 ~~~~~L~~L~Ls~n~l~  252 (776)
                         .+|++|-|.+..+.
T Consensus       121 ---~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  121 ---KNLRVLVLNGTGLS  134 (418)
T ss_pred             ---cceEEEEEcCCCCC
Confidence               77888888877665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=8.5e-09  Score=111.29  Aligned_cols=107  Identities=33%  Similarity=0.368  Sum_probs=77.0

Q ss_pred             ccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc-cccCcCCCCeeeCcCceeeecCCccCcCCCCCCe
Q 047152          609 TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP-KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSV  687 (776)
Q Consensus       609 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  687 (776)
                      -++.++.|||++|+++..  +.+..|+.|+.|||++|.++ .+|. ....+. |+.|.+++|.++..  ..+.+|.+|+.
T Consensus       185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~  258 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG  258 (1096)
T ss_pred             HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence            456778889999998843  37888888999999999888 3442 223333 88899999988743  35778888899


Q ss_pred             eeCCCCcceecCCC--CCcccccccccccCCCCCCC
Q 047152          688 MDLSYNNLSGKIPL--GTQLQSFNELVYAGNPELCG  721 (776)
Q Consensus       688 L~ls~N~l~g~iP~--~~~~~~~~~~~~~gN~~lc~  721 (776)
                      ||+++|-+++----  -..+..+..+.++|||.-|.
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999988753111  13445666778899988775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=1.7e-08  Score=86.80  Aligned_cols=133  Identities=28%  Similarity=0.351  Sum_probs=69.4

Q ss_pred             ccEEECcCCcccccCChhhh---CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152          545 LIYLDLSNNLLSGKLPDCWF---QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN  621 (776)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N  621 (776)
                      +..+||+++++- .+++...   ....|...+|++|.+. ..|..|..                   .++.++.|+|++|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-------------------kf~t~t~lNl~~n   87 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-------------------KFPTATTLNLANN   87 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-------------------ccchhhhhhcchh
Confidence            445666666653 3444332   3334445566666655 23322221                   1223355666666


Q ss_pred             CCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      .|+ .+|.++..++.|+.||++.|.+. ..|.-+..+.++-.||..+|.+. ++|..+-.-+.....++.++++.+..|.
T Consensus        88 eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen   88 EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            666 56666666666666666666666 45555555666666666666655 4443322223333344555555555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.6e-08  Score=96.76  Aligned_cols=177  Identities=21%  Similarity=0.222  Sum_probs=115.8

Q ss_pred             CCccEEEcCCCCCCCCc-hhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCC-CCCC--CchhhcccCCC
Q 047152          239 NSLEVIDLTENNLTNSV-YPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSN-ELRG--IPKFLGNMCGL  314 (776)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~-~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~--ip~~l~~l~~L  314 (776)
                      +.|+++||+...++..- -..+..+++  |+.|.+.++++...+...+++-.+|+.|+++.+ .++.  ..-.+.+++.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~k--Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSK--LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHh--hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            45788888877776422 223455666  888888888888888888888888999998876 4554  33456788889


Q ss_pred             cEEeccCCcCCCccchHH-hhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcc-ccccchhcccCC
Q 047152          315 KILYLSGKELKGQLSEFI-QDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNL-LNGTIHKSIGQL  388 (776)
Q Consensus       315 ~~L~Ls~n~l~~~~~~~~-~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l  388 (776)
                      ..|+++.|.+.......+ ....     ++|+.|+|+++.-.-....    ...+++|..|||++|. ++...-..|.++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~his-----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHIS-----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhc-----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence            999999888765443222 2222     2788888887653211111    4567888888888764 343344456677


Q ss_pred             CCCcEEECCCccccccccHH--hhhCCCCCcEEECCCC
Q 047152          389 FKLEMLKLNGNSLGGVISEA--LFSNLSRLAALDLADN  424 (776)
Q Consensus       389 ~~L~~L~L~~N~l~~~~~~~--~~~~l~~L~~L~Ls~n  424 (776)
                      +.|++|.++.|.  +.+|..  .+...|.|.+||+.++
T Consensus       338 ~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  338 NYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             chheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            788888887776  344442  2344566666666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=3.2e-08  Score=96.18  Aligned_cols=61  Identities=25%  Similarity=0.165  Sum_probs=36.6

Q ss_pred             hcccCCCcEEeccCCc-CCCccchHHhhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcc
Q 047152          308 LGNMCGLKILYLSGKE-LKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNL  376 (776)
Q Consensus       308 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~  376 (776)
                      ...+++|.+|||++|. ++......|..++      .|++|.++.|..  .+|.    +...|+|.+||+.++-
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~------~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFN------YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcc------hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            3456666666666553 3332333344444      677777777764  3443    6778888888887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=1.2e-08  Score=110.15  Aligned_cols=126  Identities=28%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      |...+.+.|.+. .+..++.-++.|+.|+|++|+++... .+..++.|++|||+.|.+....--.....       .|+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-------~L~~  236 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-------KLQL  236 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-------hhee
Confidence            555556666655 34455666666667777777666653 56666666677776666654322211111       4666


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCccccccc-hhcccCCCCCcEEECCCcccc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTI-HKSIGQLFKLEMLKLNGNSLG  402 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~  402 (776)
                      |.+++|.++ ..-.+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.+|.+.
T Consensus       237 L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  237 LNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666666665 3334566666666666666655421 111334455666666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.32  E-value=3.9e-07  Score=87.60  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=41.4

Q ss_pred             cCEEEccCCccccCcc----hhhcCCCCCCEEEccCCCCCC--Cc----hhhcccCCCcEEeccCCcCCCccchHHhhcc
Q 047152          267 VDRISLPSNQLQGSIP----EAFGRMVSLRYLDLSSNELRG--IP----KFLGNMCGLKILYLSGKELKGQLSEFIQDLS  336 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~--ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  336 (776)
                      |+......|++..-..    ..+..-.+|+.+.+..|.|..  +.    ..+..+.+|++|++.+|.++-.....++..-
T Consensus       159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al  238 (388)
T COG5238         159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL  238 (388)
T ss_pred             ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence            5555555555432111    112223456666666665543  11    1234455666666666666544444433322


Q ss_pred             CCCcCCCccEEEccccccc
Q 047152          337 SGCTKNSLEWLHLSSNEIT  355 (776)
Q Consensus       337 ~~~~~~~L~~L~L~~n~l~  355 (776)
                        |.++.|++|.+.+|-++
T Consensus       239 --~~W~~lrEL~lnDClls  255 (388)
T COG5238         239 --CEWNLLRELRLNDCLLS  255 (388)
T ss_pred             --cccchhhhccccchhhc
Confidence              23334566666655554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.31  E-value=3.9e-07  Score=87.60  Aligned_cols=228  Identities=24%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             cccCCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCc-------cCCCCCCCCEEeccCCC
Q 047152          107 ALLKLQHLTYLDLSRNNFSGS---SIPEFLGSLGKLSYLGLSSAEFAG----PIPH-------QLGNLSRLQFLDLSFNN  172 (776)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n~  172 (776)
                      .+..+..++.+|||+|.|...   .+...+.+-++|+..++++- ++|    .+|+       .+-.+++|+..+||.|.
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            345578888899999988642   12334556677888887763 222    2222       23456666777777666


Q ss_pred             CCCCCCch----hhccCCCCcEEEccCCCCCCcch--hhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEc
Q 047152          173 LFSGENLD----WLSHLSSLIYLYLDLNDLSNFSN--WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL  246 (776)
Q Consensus       173 ~~~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~L  246 (776)
                      +.. ..++    .+++-+.|++|.+++|.+..+..  +...+..+                  .........+.|++...
T Consensus       104 fg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l------------------a~nKKaa~kp~Le~vic  164 (388)
T COG5238         104 FGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL------------------AYNKKAADKPKLEVVIC  164 (388)
T ss_pred             cCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH------------------HHHhhhccCCCceEEEe
Confidence            643 2221    23444555555555554433210  11000000                  00001112255666666


Q ss_pred             CCCCCCC-Cchhh---HhhcCCCCcCEEEccCCccccC-----cchhhcCCCCCCEEEccCCCCCC-----CchhhcccC
Q 047152          247 TENNLTN-SVYPW---LFNVSSSLVDRISLPSNQLQGS-----IPEAFGRMVSLRYLDLSSNELRG-----IPKFLGNMC  312 (776)
Q Consensus       247 s~n~l~~-~~~~~---l~~~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~  312 (776)
                      ..|++.. +..-+   +.....  ++.+.+..|.+.-.     +-..+..+.+|+.||+.+|.++-     +...+...+
T Consensus       165 grNRlengs~~~~a~~l~sh~~--lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         165 GRNRLENGSKELSAALLESHEN--LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcC--ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            6665532 11111   111223  66666666665422     11224567888999999988775     334556677


Q ss_pred             CCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccc
Q 047152          313 GLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG  356 (776)
Q Consensus       313 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~  356 (776)
                      .|+.|.+.+|.++..-...+-...+-...++|..|...+|...+
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            78999999998886655443332222223366777777666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=7.1e-08  Score=83.01  Aligned_cols=127  Identities=22%  Similarity=0.329  Sum_probs=95.8

Q ss_pred             CCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhc-cccCCEEECcCCc
Q 047152          568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRNN  646 (776)
Q Consensus       568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~  646 (776)
                      .+..++|+++++- .+++....+....+                 |+..+|++|.+. ..|+.|.. .+.++.|||++|.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~e-----------------l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYE-----------------LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNE   88 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCce-----------------EEEEecccchhh-hCCHHHhhccchhhhhhcchhh
Confidence            4667788888774 56665555544433                 377899999999 55655554 4589999999999


Q ss_pred             ccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCC
Q 047152          647 LTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN  716 (776)
Q Consensus       647 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  716 (776)
                      ++ .+|.++..++.|+.|+++.|.+. ..|.-+..|.+|..|+..+|... +||......+...+.--||
T Consensus        89 is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen   89 IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence            99 78999999999999999999998 67777888999999999999885 6776544444444433355

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=6.4e-07  Score=87.29  Aligned_cols=64  Identities=28%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCCCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCC
Q 047152          110 KLQHLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL  173 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  173 (776)
                      ..++++.|||.+|.|+.- ++-.-+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            345566666666655531 1222344555666666666655432221112334555555544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=6.1e-06  Score=94.38  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CCCCCEEecCCCCCCCC-CCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152          136 LGKLSYLGLSSAEFAGP-IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL  214 (776)
Q Consensus       136 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  214 (776)
                      ||.|+.|.+++=.+... .-....++++|..||+|+.++.   ....++++++|+.|.+.+-.+..... ...+-++++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknLq~L~mrnLe~e~~~~-l~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---NLSGISRLKNLQVLSMRNLEFESYQD-LIDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---CcHHHhccccHHHHhccCCCCCchhh-HHHHhcccCC
Confidence            44555555544333211 1112234455555555554442   22444455555555444444443222 1233345555


Q ss_pred             CEEEccCCCCCCCC--chh-hhcCCCCCCccEEEcCCCCCCCCchhhH
Q 047152          215 TTLSLYSCDLPPII--PSS-LLNLNSSNSLEVIDLTENNLTNSVYPWL  259 (776)
Q Consensus       215 ~~L~L~~n~l~~~~--~~~-l~~l~~~~~L~~L~Ls~n~l~~~~~~~l  259 (776)
                      ++||+|........  ... +..-..+++|+.||.|+..+.+.+...+
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            55555544332211  111 1000112677777777766665444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=9.1e-06  Score=56.89  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=13.8

Q ss_pred             ccEEEccCCCCccCCchhhhccccCCEEECcCCccc
Q 047152          613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT  648 (776)
Q Consensus       613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  648 (776)
                      |++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 23333444444444444444443

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.82  E-value=8.7e-06  Score=78.80  Aligned_cols=115  Identities=23%  Similarity=0.210  Sum_probs=78.2

Q ss_pred             eeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC--CCCCCCCccCCCCCCCCEEeccCCCCCCCCCc
Q 047152          102 GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA--EFAGPIPHQLGNLSRLQFLDLSFNNLFSGENL  179 (776)
Q Consensus       102 g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  179 (776)
                      |.+..-...+..|+.|++.+..++..   ..+..|++|++|.+|.|  ++++.++.....+++|++|++++|++......
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            33444445556666777776666532   34566889999999999  66666666666779999999999998765666


Q ss_pred             hhhccCCCCcEEEccCCCCCCcchh-hHhhcCCCCCCEEEc
Q 047152          180 DWLSHLSSLIYLYLDLNDLSNFSNW-VQLLSKLHSLTTLSL  219 (776)
Q Consensus       180 ~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L  219 (776)
                      ..+..+++|..|++.+|.-+..... -..+.-+++|++|+-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            6777888888888888766654221 233455666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=5.2e-06  Score=84.98  Aligned_cols=134  Identities=21%  Similarity=0.132  Sum_probs=70.7

Q ss_pred             CCCCCCEEEccCCCCCC---CchhhcccCCCcEEeccCCcC-CCccchHHhhccCCCcCCCccEEEcccccccccC--CC
Q 047152          287 RMVSLRYLDLSSNELRG---IPKFLGNMCGLKILYLSGKEL-KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM--PN  360 (776)
Q Consensus       287 ~l~~L~~L~L~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~--~~  360 (776)
                      .+..|+.|+.+++.-.+   +-.--.+..+|+++.++.++- +..-...++.     ..+.|+.+++..+......  ..
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-----n~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-----NCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-----CChhhhhhcccccceehhhhHhh
Confidence            45667777776654322   212233556777777777652 2111111111     1126777777766543221  11


Q ss_pred             -ccCCCCCCEEeccCcccc-cc----chhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCc
Q 047152          361 -LGEFSSLKQLNLENNLLN-GT----IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS  425 (776)
Q Consensus       361 -l~~l~~L~~L~Ls~n~l~-~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  425 (776)
                       -.+++.|+++.++++... +.    ....-..+..|+.+.++++.....-....+..+++|+.+++.+++
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence             346777888888777532 21    011123456677778877765433222345566777777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=3.5e-05  Score=53.93  Aligned_cols=36  Identities=36%  Similarity=0.536  Sum_probs=18.0

Q ss_pred             CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152          290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      +|++|++++|+++.+|..++++++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            455555555555555544555555555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.72  E-value=5.2e-05  Score=70.32  Aligned_cols=107  Identities=28%  Similarity=0.274  Sum_probs=67.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL  191 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  191 (776)
                      .....+||++|.+...   ..|..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|.+...+....+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4567788888877632   3566778888888888888755554334566788888888877666666666777777777


Q ss_pred             EccCCCCCCcchh-hHhhcCCCCCCEEEccC
Q 047152          192 YLDLNDLSNFSNW-VQLLSKLHSLTTLSLYS  221 (776)
Q Consensus       192 ~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~  221 (776)
                      .+-+|..+..... ...+..+++|++||...
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777666543211 11234444555544443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00014  Score=76.68  Aligned_cols=50  Identities=16%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN  553 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N  553 (776)
                      ..|++++|.++. +|..+.+|+.|.++++.--...|..+  .++|++|++++|
T Consensus        55 ~~L~Is~c~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         55 GRLYIKDCDIES-LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CEEEeCCCCCcc-cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            566666665553 34445566666666532222333322  245666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.68  E-value=2.9e-06  Score=86.81  Aligned_cols=298  Identities=19%  Similarity=0.161  Sum_probs=146.6

Q ss_pred             CCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCC-CCCCCCccC-CCCCCCCEEeccCCCCCCCCCch-hhccCCCC
Q 047152          113 HLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSAE-FAGPIPHQL-GNLSRLQFLDLSFNNLFSGENLD-WLSHLSSL  188 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L  188 (776)
                      .|+.|.++++.=.+. .+-..-.+++++++|++.++. ++...-.++ ..+++|++|+|..|...+..... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            355555555532221 122233455666666666554 221111112 24566666666553321111112 23456666


Q ss_pred             cEEEccCCC-CCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCC-CCCCccEEEcCCCC-CCCCch-hhHhhcCC
Q 047152          189 IYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLN-SSNSLEVIDLTENN-LTNSVY-PWLFNVSS  264 (776)
Q Consensus       189 ~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~-l~~~~~-~~l~~~~~  264 (776)
                      ++|+++++. +++ ..+.....++..++.+.+.+|.=.+  ...+.... ....+..+++..+. ++...- ..-..+..
T Consensus       219 ~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHhhhccCchhhc-CcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            666666653 222 2333445556666666665542111  11111100 00233444443432 232211 11122333


Q ss_pred             CCcCEEEccCCccccC-cchhh-cCCCCCCEEEccCCC-CCC--CchhhcccCCCcEEeccCCcCCCccchHHhhccCCC
Q 047152          265 SLVDRISLPSNQLQGS-IPEAF-GRMVSLRYLDLSSNE-LRG--IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGC  339 (776)
Q Consensus       265 ~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~L~~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~  339 (776)
                        ++.++.+++...+. .-.++ .+..+|+.+.++.++ +++  +-.--.+.+.|+.+++..+......  .+..+...|
T Consensus       296 --lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C  371 (483)
T KOG4341|consen  296 --LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC  371 (483)
T ss_pred             --hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC
Confidence              67777766654322 11222 466788888888774 444  2222345677888888777654222  234333222


Q ss_pred             cCCCccEEEcccccccccC--CC----ccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECCCcccccccc-HHhhh
Q 047152          340 TKNSLEWLHLSSNEITGSM--PN----LGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLNGNSLGGVIS-EALFS  411 (776)
Q Consensus       340 ~~~~L~~L~L~~n~l~~~~--~~----l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~  411 (776)
                        +.|+.+.+++|......  ..    -..+..|+.+.++++... +..-+.+..+++|+.+++-+++-...-+ ...-.
T Consensus       372 --~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  372 --PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             --chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence              27888888887654332  11    245667888999988754 3344556778899999988876321111 11234


Q ss_pred             CCCCCcEE
Q 047152          412 NLSRLAAL  419 (776)
Q Consensus       412 ~l~~L~~L  419 (776)
                      ++|+++..
T Consensus       450 ~lp~i~v~  457 (483)
T KOG4341|consen  450 HLPNIKVH  457 (483)
T ss_pred             hCccceeh
Confidence            56665544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=5.9e-05  Score=70.00  Aligned_cols=129  Identities=23%  Similarity=0.267  Sum_probs=85.0

Q ss_pred             CEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152          115 TYLDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL  193 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L  193 (776)
                      +.++|++.++..+   ..++ .+.+...+||++|.+. .+ ..|..++.|.+|.|++|+|+. ..+.--.-+++|+.|.|
T Consensus        22 ~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   22 RELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccch---hhccccccccceecccccchh-hc-ccCCCccccceEEecCCccee-eccchhhhccccceEEe
Confidence            4555655544321   1122 2346778999999886 33 347788899999999999875 33333445678999999


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN  250 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~  250 (776)
                      .+|++..+.+ ..-+..|++|++|.+-+|..+...---..-+-.+++|++||..+-.
T Consensus        96 tnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   96 TNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9998887644 3457788899999998887765432111112223889999887654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=8.9e-05  Score=85.00  Aligned_cols=108  Identities=23%  Similarity=0.313  Sum_probs=61.3

Q ss_pred             CCCCEEecCCCCCCCC-CCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152          137 GKLSYLGLSSAEFAGP-IPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL  214 (776)
Q Consensus       137 ~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  214 (776)
                      .+|++||+++...-.. -|..++ .+|.|++|.+++-.+....-.....++++|+.||+|+.+++.+    ..++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            4677777776543221 222333 4677777777765554322223445677777777777777663    456667777


Q ss_pred             CEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCC
Q 047152          215 TTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNL  251 (776)
Q Consensus       215 ~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l  251 (776)
                      ++|.+.+-.+.. ..-..+.+|   ++|++||+|....
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L---~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNL---KKLRVLDISRDKN  232 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcc---cCCCeeecccccc
Confidence            777666655543 222334444   6666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00056  Score=72.26  Aligned_cols=14  Identities=36%  Similarity=0.249  Sum_probs=8.1

Q ss_pred             CCCcEEeccCCcCC
Q 047152          312 CGLKILYLSGKELK  325 (776)
Q Consensus       312 ~~L~~L~Ls~n~l~  325 (776)
                      ++|++|++++|...
T Consensus       156 sSLk~L~Is~c~~i  169 (426)
T PRK15386        156 PSLKTLSLTGCSNI  169 (426)
T ss_pred             CcccEEEecCCCcc
Confidence            35666666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00077  Score=65.60  Aligned_cols=95  Identities=20%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCC-CCchhhccCCCCcEEEccCCCCCCcchhhHh
Q 047152          129 IPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSG-ENLDWLSHLSSLIYLYLDLNDLSNFSNWVQL  207 (776)
Q Consensus       129 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  207 (776)
                      +......+..|+.|++.+..++..  ..+-.|++|++|.+|.|+.... +......++++|++|++++|++..+.+ ...
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence            444445566778888777777632  3466788999999999943321 233334556888888888888876533 244


Q ss_pred             hcCCCCCCEEEccCCCCCC
Q 047152          208 LSKLHSLTTLSLYSCDLPP  226 (776)
Q Consensus       208 l~~l~~L~~L~L~~n~l~~  226 (776)
                      +..+.+|..|++..|..+.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence            5667777777877776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=8.3e-05  Score=72.23  Aligned_cols=81  Identities=26%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      ..+.|++-++.++++   ....+++.|++|.||-|.++..  ..+..+++|++|.|..|.|.+......+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            334444444444433   1233455555555555555422  12444555555555555554333333445555555555


Q ss_pred             ccCCCC
Q 047152          193 LDLNDL  198 (776)
Q Consensus       193 Ls~n~l  198 (776)
                      |..|..
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.00013  Score=70.87  Aligned_cols=102  Identities=25%  Similarity=0.225  Sum_probs=79.0

Q ss_pred             CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152          135 SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL  214 (776)
Q Consensus       135 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  214 (776)
                      .+.+.+.|+..+|.++++  .....++.|++|.||-|+|+   ....+..|++|++|+|..|.|.++.. ...+.++++|
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHH-HHHHhcCchh
Confidence            356778899999998853  23457899999999999984   45678899999999999999998754 4678899999


Q ss_pred             CEEEccCCCCCCCCch-----hhhcCCCCCCccEEE
Q 047152          215 TTLSLYSCDLPPIIPS-----SLLNLNSSNSLEVID  245 (776)
Q Consensus       215 ~~L~L~~n~l~~~~~~-----~l~~l~~~~~L~~L~  245 (776)
                      +.|.|..|.-.+..+.     .+..+   ++|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~L---PnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVL---PNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHc---ccchhcc
Confidence            9999999877665543     33445   6666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.26  E-value=0.0095  Score=53.33  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=20.3

Q ss_pred             cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152          538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI  593 (776)
Q Consensus       538 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  593 (776)
                      .|..+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +.......|..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l   60 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSL   60 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccc
Confidence            344455566655553 344334444555555666655553 332333334444334

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.08  E-value=0.0015  Score=73.67  Aligned_cols=112  Identities=25%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             CCCCCEEeCCCCC-CCCCCCCccccCCCCCCEEecCCC-CCCCCCC----ccCCCCCCCCEEeccCCC-CCCCCCchhhc
Q 047152          111 LQHLTYLDLSRNN-FSGSSIPEFLGSLGKLSYLGLSSA-EFAGPIP----HQLGNLSRLQFLDLSFNN-LFSGENLDWLS  183 (776)
Q Consensus       111 l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~  183 (776)
                      ++.|+.|.+.++. +....+-.....+++|+.|+++++ ......+    .....+++|+.|+++++. +++ .....++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence            4555555555542 221111223344556666666552 1111111    112234555555555555 222 2222222


Q ss_pred             c-CCCCcEEEccCCC-CCCcchhhHhhcCCCCCCEEEccCCCC
Q 047152          184 H-LSSLIYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSCDL  224 (776)
Q Consensus       184 ~-l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l  224 (776)
                      . +++|++|.+.++. +++. .+......++.|++|++++|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCcc
Confidence            2 5555555544444 2221 2334444555555555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.89  E-value=0.026  Score=50.42  Aligned_cols=120  Identities=18%  Similarity=0.296  Sum_probs=47.9

Q ss_pred             hhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC-Cc
Q 047152          284 AFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NL  361 (776)
Q Consensus       284 ~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~-~l  361 (776)
                      +|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +.......|....      +++.+.+.+ .+..... .+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence            455666666666653 344433 33555556666666553 4443334444444      566666654 2221222 25


Q ss_pred             cCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152          362 GEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL  416 (776)
Q Consensus       362 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L  416 (776)
                      ..+++|+.+++..+ +.......+.++ +|+.+.+..+ +. .++...|.++++|
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--S-S----GGG-----
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-cc-EECCccccccccC
Confidence            56677777777554 443344455555 7777776653 22 3344456666555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0063  Score=35.32  Aligned_cols=12  Identities=50%  Similarity=0.833  Sum_probs=5.4

Q ss_pred             CCeeeCcCceee
Q 047152          661 LDFLDLSRNQFF  672 (776)
Q Consensus       661 L~~L~Ls~N~l~  672 (776)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.46  E-value=0.0043  Score=69.83  Aligned_cols=118  Identities=25%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             cccccCCCCCCEEeCCCC-CCCCC---CCCccccCCCCCCEEecCCCC-CCCCCCccCC-CCCCCCEEeccCCC-CCCCC
Q 047152          105 TPALLKLQHLTYLDLSRN-NFSGS---SIPEFLGSLGKLSYLGLSSAE-FAGPIPHQLG-NLSRLQFLDLSFNN-LFSGE  177 (776)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-~~~~~  177 (776)
                      .+....+++|+.|+++++ .....   ........+++|+.|+++.+. ++...-..++ .+++|++|.+.++. +++.+
T Consensus       207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g  286 (482)
T KOG1947|consen  207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG  286 (482)
T ss_pred             HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence            355678899999999973 21111   012344567899999999998 5544333444 38899999988887 55544


Q ss_pred             CchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCC
Q 047152          178 NLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC  222 (776)
Q Consensus       178 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n  222 (776)
                      .......+++|++|+++++.......+.....++++|+.|.+...
T Consensus       287 l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  287 LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            445567799999999999876554445556677888877665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.30  E-value=0.0073  Score=35.05  Aligned_cols=20  Identities=45%  Similarity=0.539  Sum_probs=11.0

Q ss_pred             CCEEECcCCcccCcCcccccC
Q 047152          637 LVALNLSRNNLTGQITPKIGQ  657 (776)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~  657 (776)
                      |++|||++|+++ .+|++|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            555666666655 45555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.45  E-value=0.0011  Score=72.71  Aligned_cols=61  Identities=28%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             ccEEEccccccccc-----CCCccCC-CCCCEEeccCccccccc----hhcccCCCCCcEEECCCcccccc
Q 047152          344 LEWLHLSSNEITGS-----MPNLGEF-SSLKQLNLENNLLNGTI----HKSIGQLFKLEMLKLNGNSLGGV  404 (776)
Q Consensus       344 L~~L~L~~n~l~~~-----~~~l~~l-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~  404 (776)
                      +.++++..|.+.+.     .|.+..+ ..+++++++.|.++..-    ...+..++.++++.+++|.+...
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            44466666655432     1113333 56677777777776533    33445566788888888877543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.43  E-value=0.0014  Score=72.15  Aligned_cols=38  Identities=37%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             CccEEEcccccccccCCC-----ccCCCCCCEEeccCcccccc
Q 047152          343 SLEWLHLSSNEITGSMPN-----LGEFSSLKQLNLENNLLNGT  380 (776)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~-----l~~l~~L~~L~Ls~n~l~~~  380 (776)
                      .+++++++.|.++.....     +..++.++++.+++|.+.+.
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            456666666666543332     44556777788877777653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.34  E-value=0.01  Score=56.61  Aligned_cols=82  Identities=24%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             cccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152          612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS  691 (776)
Q Consensus       612 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  691 (776)
                      ..+.||++.|++. ..-..|.-++.|..|+++.|.+. ..|..++++..+..+++.+|..+ ..|.++...+.+++++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            3466777777766 44455666777777777777776 56777777777777777777776 667777777777777777


Q ss_pred             CCcce
Q 047152          692 YNNLS  696 (776)
Q Consensus       692 ~N~l~  696 (776)
                      .|++.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            77664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.25  E-value=0.0039  Score=59.34  Aligned_cols=62  Identities=15%  Similarity=0.101  Sum_probs=29.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN  172 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  172 (776)
                      |..++.+..||++.|.+.  ..|..++.+..++.+++..|..+ ..|.+++..+.++++++-+|.
T Consensus        61 ~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            344444444455544444  24444444444444444444444 444444444444444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.69  E-value=0.14  Score=27.44  Aligned_cols=11  Identities=55%  Similarity=0.709  Sum_probs=3.3

Q ss_pred             CCEEECcCCcc
Q 047152          637 LVALNLSRNNL  647 (776)
Q Consensus       637 L~~L~Ls~N~l  647 (776)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.48  E-value=0.17  Score=27.18  Aligned_cols=14  Identities=57%  Similarity=0.759  Sum_probs=5.1

Q ss_pred             CCCEEEccCCCCCC
Q 047152          290 SLRYLDLSSNELRG  303 (776)
Q Consensus       290 ~L~~L~L~~n~l~~  303 (776)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.04  E-value=0.58  Score=28.24  Aligned_cols=13  Identities=46%  Similarity=0.644  Sum_probs=5.5

Q ss_pred             cCCEEECcCCccc
Q 047152          636 GLVALNLSRNNLT  648 (776)
Q Consensus       636 ~L~~L~Ls~N~l~  648 (776)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.04  E-value=0.58  Score=28.24  Aligned_cols=13  Identities=46%  Similarity=0.644  Sum_probs=5.5

Q ss_pred             cCCEEECcCCccc
Q 047152          636 GLVALNLSRNNLT  648 (776)
Q Consensus       636 ~L~~L~Ls~N~l~  648 (776)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.27  E-value=0.63  Score=28.08  Aligned_cols=14  Identities=50%  Similarity=0.501  Sum_probs=8.8

Q ss_pred             CCCCeeeCcCceee
Q 047152          659 KSLDFLDLSRNQFF  672 (776)
Q Consensus       659 ~~L~~L~Ls~N~l~  672 (776)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.27  E-value=0.63  Score=28.08  Aligned_cols=14  Identities=50%  Similarity=0.501  Sum_probs=8.8

Q ss_pred             CCCCeeeCcCceee
Q 047152          659 KSLDFLDLSRNQFF  672 (776)
Q Consensus       659 ~~L~~L~Ls~N~l~  672 (776)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.51  E-value=0.15  Score=48.01  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=15.5

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA  147 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n  147 (776)
                      ++.+|-++..|... .-+.+..++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHH-HHHHHhccchhhhheeccc
Confidence            44555555554432 2233444445555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	776
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-20
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-20
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		7e-05

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 216/479 (45%), Gaps = 83/479 (17%)
Query: 242 EVIDLTENNLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
           EV+DL+ N+++ + V  W+ +     +  +++  N++ G +     R V+L +LD+SSN 
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN 211
Query: 301 L-RGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359
              GIP FLG+   L+ L +SG +L G  S  I    S CT+  L+ L++SSN+  G +P
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCTE--LKLLNISSNQFVGPIP 264
Query: 360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
            L                          L  L+ L L  N   G I + L      L  L
Sbjct: 265 PL-------------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML-- 477
           DL+ N       +  +PPF       G C +            +  N+  +L    +L  
Sbjct: 300 DLSGNHF-----YGAVPPF------FGSCSL------LESLALSSNNFSGELPMDTLLKM 342
Query: 478 -----LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
                L+LS N+  G++P+       S   +D+SSN+F GPI P        NL +N   
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNP-- 392
Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
                     N L  L L NN  +GK+P        LV L+L+ N   G IP+S+G L  
Sbjct: 393 ---------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 593 IRSLSLY-NRSQYEYKSTLGLVKILD---LSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
           +R L L+ N  + E    L  VK L+   L  N L G +P  + +   L  ++LS N LT
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
           G+I   IG+L++L  L LS N F G IP+ L     L  +DL+ N  +G IP     QS
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 203/470 (43%), Gaps = 104/470 (22%)
Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG---SMPNLGEFSSLK--QX 370
            L+LS   + G +S F       C+  SL  L LS N ++G   ++ +LG  S LK    
Sbjct: 81  SLFLSNSHINGSVSGF------KCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133
Query: 371 XXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGG--VISEALFSNLSRLAALDLADNSLT- 427
                   G +   + +L  LE+L L+ NS+ G  V+   L      L  L ++ N ++ 
Sbjct: 134 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 428 ---------LEFSHDWIPPFQLNTISLGHC-----------KMGPRFPKWLQTQNTVPNW 467
                    LEF       F      LG C           K+   F + + T       
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST------- 245
Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSL-----------RFDISGP-----------GIDI 505
                 +  LLN+SSNQ  G +P L L           +F    P           G+D+
Sbjct: 246 ----CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 506 SSNHFEGPIPP---------------------LPSNA-------TSLNLSKNKFSGSI-S 536
           S NHF G +PP                     LP +          L+LS N+FSG +  
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 537 FLCSLSNRLIYLDLSNNLLSGK-LPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
            L +LS  L+ LDLS+N  SG  LP+ C    ++L  L L NN F GKIP ++     + 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 595 SLSL-YNRSQYEYKSTLG-LVKILDLS--SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ 650
           SL L +N       S+LG L K+ DL    N L G +P+E+M +  L  L L  N+LTG+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
           I   +    +L+++ LS N+  G IP  + +L  L+++ LS N+ SG IP
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 217/479 (45%), Gaps = 83/479 (17%)
Query: 242 EVIDLTENNLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
           EV+DL+ N+++ + V  W+ +     +  +++  N++ G +  +  R V+L +LD+SSN 
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN 208
Query: 301 LR-GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359
              GIP FLG+   L+ L +SG +L G  S  I    S CT+  L+ L++SSN+  G +P
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCTE--LKLLNISSNQFVGPIP 261
Query: 360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
            L                          L  L+ L L  N   G I + L      L  L
Sbjct: 262 PL-------------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML-- 477
           DL+ N       +  +PPF       G C +            +  N+  +L    +L  
Sbjct: 297 DLSGNHF-----YGAVPPF------FGSCSL------LESLALSSNNFSGELPMDTLLKM 339
Query: 478 -----LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
                L+LS N+  G++P+       S   +D+SSN+F GPI P        NL +N   
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNP-- 389
Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
                     N L  L L NN  +GK+P        LV L+L+ N   G IP+S+G L  
Sbjct: 390 ---------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 593 IRSLSLY-NRSQYEYKSTLGLVKILD---LSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
           +R L L+ N  + E    L  VK L+   L  N L G +P  + +   L  ++LS N LT
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
           G+I   IG+L++L  L LS N F G IP+ L     L  +DL+ N  +G IP     QS
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 203/470 (43%), Gaps = 104/470 (22%)
Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG---SMPNLGEFSSLK--QX 370
            L+LS   + G +S F       C+  SL  L LS N ++G   ++ +LG  S LK    
Sbjct: 78  SLFLSNSHINGSVSGF------KCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 130
Query: 371 XXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGG--VISEALFSNLSRLAALDLADNSLT- 427
                   G +   + +L  LE+L L+ NS+ G  V+   L      L  L ++ N ++ 
Sbjct: 131 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 428 ---------LEFSHDWIPPFQLNTISLGHC-----------KMGPRFPKWLQTQNTVPNW 467
                    LEF       F      LG C           K+   F + + T       
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST------- 242
Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSL-----------RFDISGP-----------GIDI 505
                 +  LLN+SSNQ  G +P L L           +F    P           G+D+
Sbjct: 243 ----CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 506 SSNHFEGPIPP---------------------LPSNA-------TSLNLSKNKFSGSI-S 536
           S NHF G +PP                     LP +          L+LS N+FSG +  
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 537 FLCSLSNRLIYLDLSNNLLSGK-LPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
            L +LS  L+ LDLS+N  SG  LP+ C    ++L  L L NN F GKIP ++     + 
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 595 SLSL-YNRSQYEYKSTLG-LVKILDLS--SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ 650
           SL L +N       S+LG L K+ DL    N L G +P+E+M +  L  L L  N+LTG+
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
           I   +    +L+++ LS N+  G IP  + +L  L+++ LS N+ SG IP
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 508 NHFEGPIPPLPSNATSLN---LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF 564
           N+  GPIPP  +  T L+   ++    SG+I    S    L+ LD S N LSG LP    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK-----STLGLVKILDLS 619
              +LV +    N   G IP+S G    + +    +R++   K     + L L   +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS 205
Query: 620 SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
            N L G              ++L++N+L   +  K+G  K+L+ LDL  N+ +G +P  L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 680 SQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724
           +QL  L  +++S+NNL G+IP G  LQ F+   YA N  LCG PL
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 495 RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL 554
           R   SG  I  +S         +PS+AT L L  NK       +     +L  L LS+N 
Sbjct: 4   RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63
Query: 555 LSGKLPDCWFQFD----SLVILNLANNNFFGKIPNSMGFLH----NIRSLSLYNRSQYEY 606
           LS K   C  Q D    SL  L+L+ N       N +G       + +  +L   S++  
Sbjct: 64  LSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLD 665
             +L  +  LD+S              L  L  L ++ N+      P I  +L++L FLD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
           LS+ Q     P++ + LS L V+++S+NN 
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-116
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  404 bits (1041), Expect = e-130
 Identities = 170/711 (23%), Positives = 269/711 (37%), Gaps = 146/711 (20%)

Query: 34  TRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPI 93
           ++ +  E   L++FK  L D   +L  W       + C + GV C      V  +DL   
Sbjct: 7   SQSLYREIHQLISFKDVLPD-KNLLPDWSSNK---NPCTFDGVTCR--DDKVTSIDLSSK 60

Query: 94  GFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI 153
             +       ++ +LL L  L  L LS ++ +GS +  F      L+ L LS    +GP+
Sbjct: 61  PLNVG--FSAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLSGPV 116

Query: 154 P--HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLS-NFSNWVQLLSK 210
                LG+ S L+FL++S N L     +     L+SL  L L  N +S        L   
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 211 LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI 270
              L  L++    +   +  S        +LE +D++ NN +                  
Sbjct: 177 CGELKHLAISGNKISGDVDVSRC-----VNLEFLDVSSNNFS------------------ 213

Query: 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLS 329
                     IP   G   +L++LD+S N+L G   + +     LK+L +S  +  G + 
Sbjct: 214 --------TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 330 EFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQ 387
                        SL++L L+ N+ TG +P+   G   +L  L+L  N   G +    G 
Sbjct: 265 PLPL--------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 388 LFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGH 447
              LE L L+ N+  G +       +  L  LDL+ N  +                    
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-------------------- 356

Query: 448 CKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISS 507
                           +P    +L+                    SL        +D+SS
Sbjct: 357 --------------GELPESLTNLS-------------------ASLLT------LDLSS 377

Query: 508 NHFEGPIPP-----LPSNATSLNLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSGKLPD 561
           N+F GPI P       +    L L  N F+G I   L + S  L+ L LS N LSG +P 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPS 436

Query: 562 CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621
                  L  L L  N   G+IP  + ++  + +                    L L  N
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET--------------------LILDFN 476

Query: 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQ 681
            L G +P  + +   L  ++LS N LTG+I   IG+L++L  L LS N F G IP+ L  
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 682 LSGLSVMDLSYNNLSGKIPLG----TQLQSFNELVYAGNPELCGLPLRNKC 728
              L  +DL+ N  +G IP      +   + N +       +    ++ +C
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  367 bits (944), Expect = e-116
 Identities = 176/654 (26%), Positives = 267/654 (40%), Gaps = 119/654 (18%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
               I P L     L +LD+S N  SG      + +  +L  L +SS +F GPIP     
Sbjct: 212 FSTGI-PFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIP--PLP 267

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSH-LSSLIYLYLDLNDLS-NFSNWVQLLSKLHSLTTL 217
           L  LQ+L L+ N   +GE  D+LS    +L  L L  N        +         L +L
Sbjct: 268 LKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---FGSCSLLESL 323

Query: 218 SLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ 276
           +L S +    +P  +LL +     L+V+DL+ N  +  +   L N+S+SL+  + L SN 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRG---LKVLDLSFNEFSGELPESLTNLSASLL-TLDLSSNN 379

Query: 277 LQGSIPEAFGR--MVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQ 333
             G I     +    +L+ L L +N   G IP  L N                       
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC---------------------- 417

Query: 334 DLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE 392
                   + L  LHLS N ++G++P+ LG  S L+ L L  N+L G I + +  +  LE
Sbjct: 418 --------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 393 MLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGP 452
            L L+ N L G I   L SN + L  + L++N LT                         
Sbjct: 470 TLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLT------------------------- 503

Query: 453 RFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD-----LSLRFDISGPGIDISS 507
                      +P W   L +   +L LS+N   G +P       SL +      +D+++
Sbjct: 504 ---------GEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIW------LDLNT 547

Query: 508 NHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL--LSGKLPDCWFQ 565
           N F G IP       S  ++ N  +G                 + NL    G   +   +
Sbjct: 548 NLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606

Query: 566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG 625
             +    N+ +  + G    +                        G +  LD+S N L G
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFD--------------------NNGSMMFLDMSYNMLSG 646

Query: 626 GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
            +PKEI  +  L  LNL  N+++G I  ++G L+ L+ LDLS N+  G IP ++S L+ L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 686 SVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPER 739
           + +DLS NNLSG IP   Q ++F    +  NP LCG PL    P      +  +
Sbjct: 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.0 bits (206), Expect = 2e-16
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 90  LQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEF 149
             P    S    G  +P       + +LD+S N  SG  IP+ +GS+  L  L L   + 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDI 668

Query: 150 AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLS 199
           +G IP ++G+L  L  LDLS N L  G     +S L+ L  + L  N+LS
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 7e-15
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 31/170 (18%)

Query: 83  GHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYL 142
            +           +    +G  +  L +L      +++   + G        + G + +L
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFL 637

Query: 143 GLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFS 202
            +S    +G IP ++G++  L  L+L  N++ SG   D +  L  L  L L  N L    
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGR- 695

Query: 203 NWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252
                                    IP ++  L     L  IDL+ NNL+
Sbjct: 696 -------------------------IPQAMSAL---TMLTEIDLSNNNLS 717

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (668), Expect = 6e-77
 Identities = 131/649 (20%), Positives = 217/649 (33%), Gaps = 63/649 (9%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
             ++T L+L+ N               +L+ L +     +   P     L  L+ L+L  
Sbjct: 24  PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           N L S  +    +  ++L  L+L  N +    N      K  +L TL L    L      
Sbjct: 83  NEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290
           + + L    +L+ + L+ N +       L   ++S + ++ L SNQ++   P  F  +  
Sbjct: 140 TQVQL---ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 291 LRYLDLSSNELRGIP----KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346
           L  L L++ +L                ++ L LS      QLS        G    +L  
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN----SQLSTTSNTTFLGLKWTNLTM 252

Query: 347 LHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
           L LS N +     +       L+   LE N +      S+  LF +  L L  +     I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 406 S--------EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKW 457
           S        +  F  L  L  L++ DN +    S+ +     L  +SL +     R    
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT- 371

Query: 458 LQTQNTVPNWFWDLTHQR-MLLNLSSNQMRGKVPDL-----SLRFDISGPGIDISSNHFE 511
                     F  L H    +LNL+ N++     D       L        +D+  N   
Sbjct: 372 -------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV------LDLGLNEIG 418

Query: 512 GPIPPLP----SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG--KLPDCWFQ 565
             +         N   + LS NK+        +L   L  L L    L      P  +  
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN------------RSQYEYKSTLGLV 613
             +L IL+L+NNN      + +  L  +  L L +                 +   L  +
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG 673
            IL+L SN       +   DL  L  ++L  NNL            SL  L+L +N    
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 674 GIPSSLS-QLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG 721
                       L+ +D+ +N             ++    +   PEL  
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  247 bits (632), Expect = 8e-72
 Identities = 133/622 (21%), Positives = 238/622 (38%), Gaps = 85/622 (13%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
               D S      + +P+ L     ++ L L+  +            S+L  LD+ FN +
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
            S    +    L  L  L L  N+LS  S+  +  +   +LT L L S  +  I  +  +
Sbjct: 62  -SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG--RMVSL 291
                 +L  +DL+ N L+++       + +  +  + L +N++Q    E        SL
Sbjct: 119 KQ---KNLITLDLSHNGLSSTKLGTQVQLEN--LQELLLSNNKIQALKSEELDIFANSSL 173

Query: 292 RYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
           + L+LSSN+++   P     +  L  L+L+  +L   L+E    L       S+  L LS
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLSLS 230

Query: 351 SNEITGSMPNLGE---FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
           +++++ +         +++L  L+L  N LN   + S   L +LE   L  N++  + S 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
           +    L  +  L+L  +      S   +P  +++  S    K        L+        
Sbjct: 291 S-LHGLFNVRYLNLKRSFTKQSISLASLP--KIDDFSFQWLKC-------LEH------- 333

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDL-----SLRFDISGPGIDISSNHFEGPIPPLPSNA- 521
                     LN+  N + G   ++     +L++      + +S++     +  L +   
Sbjct: 334 ----------LNMEDNDIPGIKSNMFTGLINLKY------LSLSNSFTS--LRTLTNETF 375

Query: 522 --------TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVIL 572
                     LNL+KNK S   S   S    L  LDL  N +  +L    ++  +++  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 573 NLANNNFFGKIPNSMGFLHNIRSLSLYN------RSQYEYKSTLGLVKILDLSSNKLGGG 626
            L+ N +     NS   + +++ L L         S       L  + ILDLS+N +   
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 627 VPKEIMDLVGLVALNLSRNNLT--------GQITPKIGQLKSLDFLDLSRNQFFGGIPSS 678
               +  L  L  L+L  NNL         G     +  L  L  L+L  N F       
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 679 LSQLSGLSVMDLSYNNLSGKIP 700
              L  L ++DL  NNL+    
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (560), Expect = 9e-62
 Identities = 120/576 (20%), Positives = 204/576 (35%), Gaps = 64/576 (11%)

Query: 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
             +  D S   L    +       +++  L L  N L          ++   LT+L +  
Sbjct: 5   SHEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGF 58

Query: 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI 281
             +  + P     L     L+V++L  N L+  +    F   ++L   + L SN +Q   
Sbjct: 59  NTISKLEPELCQKL---PMLKVLNLQHNELS-QLSDKTFAFCTNLT-ELHLMSNSIQKIK 113

Query: 282 PEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT 340
              F +  +L  LDLS N L          +  L+ L LS      ++     +      
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN----NKIQALKSEELDIFA 169

Query: 341 KNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIG---QLFKLEMLKL 396
            +SL+ L LSSN+I    P        L  L L N  L  ++ + +        +  L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 397 NGNSLGGVISEALFS-NLSRLAALDLADNSLTLEFSHDWIPPF-QLNTISLGHCKMGPRF 454
           + + L    +        + L  LDL+ N+L     +D      QL    L +  +    
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNI---- 284

Query: 455 PKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGP--------GIDIS 506
                 Q+   +    L + R  LNL  +  +  +   SL                +++ 
Sbjct: 285 ------QHLFSHSLHGLFNVRY-LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 507 SNHFEGPIPPLPSNATSL---NLSKNKFSG----SISFLCSLSNRLIYLDLSNNLLSGKL 559
            N   G    + +   +L   +LS +  S     + +F+    + L  L+L+ N +S   
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 560 PDCWFQFDSLVILNLANNNFFGKIPNSM-GFLHNIRSLSL-YNRSQYEYKSTLGLV---K 614
            D +     L +L+L  N    ++       L NI  + L YN+     +++  LV   +
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 615 ILDLSSNKLGG--GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQ-- 670
            L L    L      P     L  L  L+LS NN+       +  L+ L+ LDL  N   
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 671 ------FFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
                   GG    L  LS L +++L  N       
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  190 bits (486), Expect = 9e-52
 Identities = 106/501 (21%), Positives = 187/501 (37%), Gaps = 44/501 (8%)

Query: 238 SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLS 297
           + S EV D +   LT  V   L    +++   ++L  NQL+      F R   L  LD+ 
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP---TNIT-VLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 298 SNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG 356
            N +  + P+    +  LK+L L   EL     +     +      +L  LHL SN I  
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT------NLTELHLMSNSIQK 111

Query: 357 SMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL-FSNLS 414
              N   +  +L  L+L +N L+ T   +  QL  L+ L L+ N +  + SE L     S
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 415 RLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQ 474
            L  L+L+ N +       +    +L  + L + ++GP   + L  +    +    + + 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS----IRN- 226

Query: 475 RMLLNLSSNQMRGKVPDLSLRFDISG-PGIDISSNHFEGPIPPLPSNATSL---NLSKNK 530
              L+LS++Q+        L    +    +D+S N+         +    L    L  N 
Sbjct: 227 ---LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 531 FSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ---------FDSLVILNLANNNFFG 581
                S        + YL+L  +     +                  L  LN+ +N+  G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 582 KIPNSMGFLHNIRSLSL-YNRSQYEYKSTLGLV-------KILDLSSNKLGGGVPKEIMD 633
              N    L N++ LSL  + +     +    V        IL+L+ NK+          
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 634 LVGLVALNLSRNNLTGQITPK-IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692
           L  L  L+L  N +  ++T +    L+++  + LS N++     +S + +  L  + L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 693 NNLSGKIPLGTQLQSFNELVY 713
             L       +  Q    L  
Sbjct: 464 VALKNVDSSPSPFQPLRNLTI 484

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  244 bits (626), Expect = 2e-71
 Identities = 100/668 (14%), Positives = 197/668 (29%), Gaps = 123/668 (18%)

Query: 55  SGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHL 114
           +   ++W    E        GV  +   G V  L L+      F   G++  A+ +L  L
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLE-----GFGASGRVPDAIGQLTEL 107

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF 174
             L L  +    +        +                    +    R  F DL  + + 
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 175 SGENLDWLSHLSSLIYLYLDLNDLSNFSNWV----QLLSKLHSLTTLSLYSCDLPPIIPS 230
           S         +     + L    +   SN +    + + +L  L    + +         
Sbjct: 168 SDPQQ---KSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 231 SLLNLNS---SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
                 +   +   +  DL  +NL +                + + +      +P     
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTD-------------VEVYNCPNLTKLPTFLKA 271

Query: 288 MVSLRYLDLSSNELRGIPKF---------LGNMCGLKILYLSGKELK-GQLSEFIQDLSS 337
           +  ++ ++++ N      +                ++I+Y+    LK   +   +Q +  
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 338 GCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397
                 L  L    N++ G +P  G    L  LNL  N +        G   ++E L   
Sbjct: 332 ------LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 398 GNSLGGVISEALFSNLSRLAALDLADNSLT--LEFSHDWIPPFQLNTISLGHCKMGPRFP 455
            N L  + +     ++S ++A+D + N +      + D + P     I++          
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS-------- 437

Query: 456 KWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDL-----SLRFDISGPGIDISSNHF 510
                                 +NLS+NQ+     +L      L        I++  N  
Sbjct: 438 ----------------------INLSNNQISKFPKELFSTGSPLSS------INLMGNML 469

Query: 511 EGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF--QFDS 568
                          + KN          +    L  +DL  N L+  L D +       
Sbjct: 470 TE-------------IPKNSLKDENENFKNTYL-LTSIDLRFNKLTK-LSDDFRATTLPY 514

Query: 569 LVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVP 628
           LV ++L+ N+F  K P        ++   + N                D   N+     P
Sbjct: 515 LVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRN--------------QRDAQGNRTLREWP 559

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM 688
           + I     L  L +  N++   +  KI    ++  LD+  N       S +       + 
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 689 DLSYNNLS 696
            L Y+   
Sbjct: 617 MLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  193 bits (493), Expect = 6e-53
 Identities = 82/616 (13%), Positives = 163/616 (26%), Gaps = 161/616 (26%)

Query: 123 NFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWL 182
           +  G+     L S G+++ L L     +G +P  +G L+ L+ L L  +     E L   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 183 SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLE 242
             +S+ +                       S                      + S    
Sbjct: 127 KGISANM-----------------------SDEQKQKMRMHYQKTFVDYDPREDFS---- 159

Query: 243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
             DL ++ +                      S+  Q SI ++    +    +   SN + 
Sbjct: 160 --DLIKDCIN---------------------SDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 303 GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-L 361
            + K +  +  L+  Y+       +      +  +               +   +     
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN-----------SEYAQQYKTEDLKW 245

Query: 362 GEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL-------FSNLS 414
                L  + + N      +   +  L +++++ +  N                      
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 415 RLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQ 474
           ++  + +  N+L        +        SL   K                     L   
Sbjct: 306 KIQIIYIGYNNLK----TFPVET------SLQKMK--------------------KLGM- 334

Query: 475 RMLLNLSSNQMRGKVPDL----SLRFDISGPGIDISSNHFEGPIPPLPSNATSL---NLS 527
              L    NQ+ GK+P       L        ++++ N               +   + +
Sbjct: 335 ---LECLYNQLEGKLPAFGSEIKLAS------LNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 528 KNKFSG--SISFLCSLSNRLIYLDLSNNLLSG-------KLPDCWFQFDSLVILNLANNN 578
            NK     +I    S+S  +  +D S N +          L    F+  ++  +NL+NN 
Sbjct: 386 HNKLKYIPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG-------GVPKEI 631
                         +                      ++L  N L            +  
Sbjct: 445 ISKFPKELFSTGSPLS--------------------SINLMGNMLTEIPKNSLKDENENF 484

Query: 632 MDLVGLVALNLSRNNLTGQITP-KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM-- 688
            +   L +++L  N LT      +   L  L  +DLS N F    P+     S L     
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGI 543

Query: 689 ----DLSYNNLSGKIP 700
               D   N    + P
Sbjct: 544 RNQRDAQGNRTLREWP 559

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.9 bits (239), Expect = 1e-20
 Identities = 24/227 (10%), Positives = 58/227 (25%), Gaps = 17/227 (7%)

Query: 502 GIDISSNHFEGPIPPLPSNATSL---NLSKNKFSGS--ISFLCSLSN--RLIYLDLSNNL 554
           G+ +      G +P      T L    L  +    +  +     +S              
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 555 LSGKLPD--CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGL 612
                 D      F  L+   + ++     I  S         +   + +       +  
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204

Query: 613 ---VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRN 669
              ++   + ++        E  +       N            K   LK L  +++   
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 670 QFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
                +P+ L  L  + +++++ N       L    Q+  +      
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 19/214 (8%)

Query: 102 GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS-------AEFAGPIP 154
             + P   K  +++ ++LS N  S     E   +   LS + L                 
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 155 HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214
               N   L  +DL FN L    +    + L  L+ + L  N  S F       S L   
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 215 ---TTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS 271
                            P  +    S   L  + +  N++       +    +  +  + 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPS---LTQLQIGSNDIRK-----VNEKITPNISVLD 593

Query: 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP 305
           +  N             +      L  ++ + I 
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 608 STLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ----ITPKIGQLKSLDF 663
           ++ G V  L L      G VP  I  L  L  L L  +             I    S + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 664 LDLSRNQFFGGIPSSLS--QLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG 721
               R  +             S L    ++ +     I   +++   +  +   +  +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 722 LP 723
           + 
Sbjct: 198 VS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 28/123 (22%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE------FAGPIPHQLGNL 160
               L +L  +DLS N+FS    P    +   L   G+ +             P  +   
Sbjct: 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 161 SRLQFLDLSFNNL--------------------FSGENLDWLSHLSSLIYLYLDLNDLSN 200
             L  L +  N++                        +L ++          L  +   +
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

Query: 201 FSN 203
              
Sbjct: 626 IRG 628

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (567), Expect = 2e-63
 Identities = 117/629 (18%), Positives = 209/629 (33%), Gaps = 77/629 (12%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
               L+ S N    +        L  L++L L+  +          +  RL  L L+ N 
Sbjct: 34  STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           L        LS   +L +L+     +S+       L    +L +L L S  +  I     
Sbjct: 93  L-IFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
                   L+V+D   N +       + ++  +    ++L  N +   I          +
Sbjct: 150 FPTEK---LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQ 205

Query: 293 YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKG-QLSEFIQDLSSGCTKNSLEWLHLSS 351
            L+    +   +      +    I  L     +     +    +  G  + S+E ++L  
Sbjct: 206 SLNFGGTQNLLVI--FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 352 NEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF 410
           +       N    FS L++L+L    L+  +   +  L  L+ L L+ N    +   +  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-A 321

Query: 411 SNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTISLGHCKMGPRFPKWLQTQNTVPNWFW 469
           SN   L  L +  N+  LE     +     L  + L H          ++T +       
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD--------IETSDCCNLQLR 373

Query: 470 DLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKN 529
           +L+H + L NLS N+                    + +  F+      P     L+L+  
Sbjct: 374 NLSHLQSL-NLSYNEPLS-----------------LKTEAFKE----CP-QLELLDLAFT 410

Query: 530 KFSGSI--SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM 587
           +       S   +L   L  L+LS++LL       +    +L  LNL  N+F        
Sbjct: 411 RLKVKDAQSPFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL 647
             L  +  L                 +IL LS   L          L  +  ++LS N L
Sbjct: 470 NSLQTLGRL-----------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 648 TGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG----- 702
           T      +  LK + +L+L+ N     +PS L  LS    ++L  N L            
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571

Query: 703 -----TQLQSFNELVYAGNPELCGLPLRN 726
                 +L+   + +    P L G+ L +
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSD 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (452), Expect = 1e-47
 Identities = 97/508 (19%), Positives = 171/508 (33%), Gaps = 49/508 (9%)

Query: 99  PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLG 158
           PL      AL   + L +L   +   S S     L +   L  L L S   +     +  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQ-LLSKLHSLTTL 217
              +L+ LD   N +    + + +S L     L L+LN   N    ++          +L
Sbjct: 151 PTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLN--GNDIAGIEPGAFDSAVFQSL 207

Query: 218 SLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQL 277
           +        +I   L N     SL +    + +  +        +    V+ I+L  +  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQ-SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 278 QGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS 337
                  F     L+ LDL++  L  +P  L  +  LK L LS  + +        +   
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP- 325

Query: 338 GCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLN--GTIHKSIGQLFKLEM 393
                SL  L +  N     +    L    +L++L+L ++ +      +  +  L  L+ 
Sbjct: 326 -----SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 394 LKLNGNSLGGVISEALFSNLSRLAALDLADNSLT-LEFSHDWIPPFQLNTISLGHCKMGP 452
           L L+ N    + +EA F    +L  LDLA   L   +    +     L  ++L H  +  
Sbjct: 381 LNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-- 437

Query: 453 RFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEG 512
                     +    F  L   +  LNL  N                  G    +N  + 
Sbjct: 438 --------DISSEQLFDGLPALQH-LNLQGNHFPK--------------GNIQKTNSLQT 474

Query: 513 PIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572
                      L LS    S       +    + ++DLS+N L+             + L
Sbjct: 475 -----LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYL 528

Query: 573 NLANNNFFGKIPNSMGFLHNIRSLSLYN 600
           NLA+N+    +P+ +  L   R+++L  
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (418), Expect = 3e-43
 Identities = 106/575 (18%), Positives = 188/575 (32%), Gaps = 113/575 (19%)

Query: 139 LSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDL 198
              LGL+       IP  L   +  + L+ SFN L + +N    S L +L +L L    +
Sbjct: 19  CENLGLNE------IPGTL--PNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQI 69

Query: 199 SNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW 258
                        H L TL L +  L  +  ++L    +   L+ +   +  ++ S+   
Sbjct: 70  YWIHE--DTFQSQHRLDTLVLTANPLIFMAETALSGPKA---LKHLFFIQTGIS-SIDFI 123

Query: 259 LFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF-LGNMCGLKIL 317
             +   +L   + L SN +             L+ LD  +N +  + K  + ++     L
Sbjct: 124 PLHNQKTLE-SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 318 YLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLL 377
            L                            +L+ N+I G  P   + +  + LN      
Sbjct: 183 SL----------------------------NLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 378 NGTIHKSIG--QLFKLEMLKLNGNSLGGVISEALFSNLSR--LAALDLADNSLTLEFSHD 433
              I K +    +  L +           IS A+F  L    + +++L  +      S+ 
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 434 WIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLS 493
           +     L  + L    +           + +P+    L+  +  L LS+N+         
Sbjct: 274 FHCFSGLQELDLTATHL-----------SELPSGLVGLSTLK-KLVLSANKFEN------ 315

Query: 494 LRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI--SFLCSLSNRLIYLDLS 551
                      +            P + T L++  N     +    L +L N L  LDLS
Sbjct: 316 -----------LCQISASN----FP-SLTHLSIKGNTKRLELGTGCLENLEN-LRELDLS 358

Query: 552 NNLL--SGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKST 609
           ++ +  S            L  LNL+ N        +      +                
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE--------------- 403

Query: 610 LGLVKILDLSSNKLGGGVPKEIM-DLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSR 668
                +LDL+  +L     +    +L  L  LNLS + L          L +L  L+L  
Sbjct: 404 -----LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 669 NQFFGGI---PSSLSQLSGLSVMDLSYNNLSGKIP 700
           N F  G     +SL  L  L ++ LS+ +LS    
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (385), Expect = 7e-39
 Identities = 71/344 (20%), Positives = 115/344 (33%), Gaps = 35/344 (10%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
                  L  LDL+  + S   +P  L  L  L  L LS+ +F         N   L  L
Sbjct: 273 TFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226
            +  N          L +L +L  L L  +D+         L  L  L +L+L   +   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG 286
           +   +         LE++DL    L        F     L   ++L  + L  S  + F 
Sbjct: 391 LKTEAFKEC---PQLELLDLAFTRLKVKDAQSPFQNLHLLK-VLNLSHSLLDISSEQLFD 446

Query: 287 RMVSLRYLDLSSNELRGI----PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
            + +L++L+L  N            L  +  L+IL LS       LS   Q   +     
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC----DLSSIDQHAFTSLK-- 500

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL- 401
            +  + LS N +T S            LNL +N ++  +   +  L +   + L  N L 
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

Query: 402 ------------------GGVISEALFSNLSRLAALDLADNSLT 427
                                  + L  N   L  + L+D +L+
Sbjct: 561 CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (376), Expect = 1e-37
 Identities = 84/469 (17%), Positives = 152/469 (32%), Gaps = 70/469 (14%)

Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
           +  +     L   + P    + +S    +    N L       F R+++L +LDL+  ++
Sbjct: 15  KTYNCENLGLN-EI-P--GTLPNSTE-CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 302 RGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
             I      +   L  L L+       L    +   SG    +L+ L      I+     
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTA----NPLIFMAETALSGPK--ALKHLFFIQTGISSIDFI 123

Query: 361 -LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLA-- 417
            L    +L+ L L +N ++           KL++L    N++   +S+   S+L +    
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNL 182

Query: 418 ALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML 477
           +L+L  N +               +++ G  +      K L+                 L
Sbjct: 183 SLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI---------QSLWL 232

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISF 537
                                     DIS   FEG       +  S+NL K+ F    S 
Sbjct: 233 GTFEDMDDE-----------------DISPAVFEGL---CEMSVESINLQKHYFFNISSN 272

Query: 538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597
                + L  LDL+   LS +LP       +L  L L+ N F      S     ++  L 
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL- 330

Query: 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIM-DLVGLVALNLSRNNLT--GQITPK 654
                               +  N     +    + +L  L  L+LS +++        +
Sbjct: 331 -------------------SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT 703
           +  L  L  L+LS N+       +  +   L ++DL++  L  K     
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 9e-18
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 24/217 (11%)

Query: 503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISF-LCSLSNRLIYLDLSNNLLSGKLPD 561
            +  +         LP++   L  S N      +     L N L +LDL+   +     D
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLIN-LTFLDLTRCQIYWIHED 75

Query: 562 CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621
            +     L  L L  N        ++     ++ L                         
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL--------------------FFIQT 115

Query: 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQ 681
            +       + +   L +L L  N+++    PK    + L  LD   N         +S 
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 682 LSGLSVM--DLSYNNLSGKIPLGTQLQSFNELVYAGN 716
           L   + +  +L+ N+++G  P       F  L + G 
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 5e-14
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 7/163 (4%)

Query: 539 CSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL 598
           C         +  N  L+ ++P      +S   L  + N        +   L N+  L L
Sbjct: 8   CIEKEVNKTYNCENLGLN-EIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 599 -YNRSQYEYKST---LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
              +  + ++ T      +  L L++N L       +     L  L   +  ++      
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
           +   K+L+ L L  N               L V+D   N +  
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (555), Expect = 1e-61
 Identities = 129/639 (20%), Positives = 198/639 (30%), Gaps = 107/639 (16%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
           LR   + +      L  LDLSR             SL  LS L L+              
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSL 219
           LS LQ L     NL +      + HL +L  L +  N + +F    +  S L +L  L L
Sbjct: 99  LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDL 156

Query: 220 YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG 279
            S  +  I  + L  L+    L +                          + L  N +  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNL-------------------------SLDLSLNPMNF 191

Query: 280 SIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELKG--QLSEFIQDL 335
             P AF  +  L  L L +N      +   +  + GL++  L   E +    L +F +  
Sbjct: 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 336 SSGCTK-----NSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
             G          L +L    ++I      L   +++   +L +  +           F 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL---TNVSSFSLVSVTIERVK--DFSYNFG 305

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
            + L+L     G   +  L S       L    N     FS   +P   L  + L     
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKR----LTFTSNKGGNAFSEVDLP--SLEFLDLSRNG- 358

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
                  L  +       +  T  +  L+LS N +                 I +SSN  
Sbjct: 359 -------LSFKGCCSQSDFGTTSLK-YLDLSFNGV-----------------ITMSSNFL 393

Query: 511 EGPIPPLPSNATSLNLSKNKFSGSI--SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDS 568
                        L+   +        S   SL N LIYLD+S+          +    S
Sbjct: 394 GLE------QLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSS 446

Query: 569 LVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVP 628
           L +L +A N+F             +R+L                   LDLS  +L    P
Sbjct: 447 LEVLKMAGNSFQENFLP--DIFTELRNL-----------------TFLDLSQCQLEQLSP 487

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL-SGLSV 687
                L  L  LN+S NN     T     L SL  LD S N         L    S L+ 
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 688 MDLSYNNLSGKIPLG---TQLQSFNELVYAGNPELCGLP 723
           ++L+ N+ +           ++   +L+       C  P
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (554), Expect = 1e-61
 Identities = 121/642 (18%), Positives = 195/642 (30%), Gaps = 103/642 (16%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           P +  + ++TY      NF    IP+ L        L LS         +   +   LQ 
Sbjct: 2   PCVEVVPNITY-QCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LDLS   +           LS L  L L  N + + +      S L SL  L     +L 
Sbjct: 57  LDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLA 113

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            +    + +L +   L+ +++  N + +   P  F+  ++L   + L SN++Q       
Sbjct: 114 SLENFPIGHLKT---LKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDL 169

Query: 286 GRMVSLRY----LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQL-SEFIQDLSSGCT 340
             +  +      LDLS N +  I         L  L L        +    IQ L+    
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG--- 226

Query: 341 KNSLEWLHLSSNEITG----SMPNLGEFSSLKQLNLENNLLN------GTIHKSIGQLFK 390
              LE   L   E          +      L  L +E   L         I      L  
Sbjct: 227 ---LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
           +    L   ++  V     FS       L+L +            P  +L ++       
Sbjct: 284 VSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFG------QFPTLKLKSLKRLT--- 331

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
                 +   +        DL      L+LS N                          F
Sbjct: 332 ------FTSNKGGNAFSEVDLPSLE-FLDLSRNG-----------------------LSF 361

Query: 511 EGPIPPLPSNATSL---NLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-F 566
           +G         TSL   +LS N      S    L   L +LD  ++ L        F   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSL 420

Query: 567 DSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG 626
            +L+ L++++ +           L ++                     +L ++ N     
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLE--------------------VLKMAGNSFQEN 460

Query: 627 VPKEIM-DLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
              +I  +L  L  L+LS+  L          L SL  L++S N FF         L+ L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 686 SVMDLSYNNLSGKIP--LGTQLQSFNELVYAGNPELCGLPLR 725
            V+D S N++       L     S   L    N   C    +
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 2e-21
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 9/211 (4%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           ++   L L+ L +LD   +N    S      SL  L YL +S              LS L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
           + L ++ N+       D  + L +L +L L    L   S      + L SL  L++   +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHNN 505

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIP- 282
              +       L   NSL+V+D + N++  S    L +  SSL   ++L  N    +   
Sbjct: 506 FFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFACTCEH 561

Query: 283 EAFGRMV-SLRYLDLSSNELRG-IPKFLGNM 311
           ++F + +   R L +    +    P     M
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
            R         L  L  L ++ N+F  + +P+    L  L++L LS  +     P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSL 219
           LS LQ L++S NN     +      L+SL  L   LN +                     
Sbjct: 493 LSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMT------------------- 532

Query: 220 YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG 279
                       L +  S  SL  ++LT+N+   +     F        ++ +   +++ 
Sbjct: 533 -------SKKQELQHFPS--SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 280 SIPEAFGRMVSLRYLDLS 297
           + P    + + +  L+++
Sbjct: 584 ATPSDK-QGMPVLSLNIT 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (563), Expect = 4e-61
 Identities = 91/673 (13%), Positives = 200/673 (29%), Gaps = 117/673 (17%)

Query: 46  TFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKIT 105
            + +  ++ +    +W    E        GV      G V  L L       F  +G++ 
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTGLSLA-----GFGAKGRVP 340

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
            A+ +L  L  L    ++ + S        L                    L    RL  
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV-QLLSKLHSLTTLSLYSCDL 224
            DL  + +     +  +   S +      + +L+N   ++ + + +L  L  +   +   
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 225 ---PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI 281
                 +     N + +   E  +L+ +NL +             +  + L +      +
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKD-------------LTDVELYNCPNMTQL 507

Query: 282 PEAFGRMVSLRYLDLSSNELRG----------IPKFLGNMCGLKILYLSGKELKG-QLSE 330
           P+    +  L+ L+++ N              +         ++I Y+    L+    S 
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 331 FIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
            +Q +        L  L    N++   +   G    L  L L+ N +   I +       
Sbjct: 568 SLQKMV------KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 391 -LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCK 449
            +E L  + N L  + +     ++  + ++D + N +  E  +          I+     
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST-- 677

Query: 450 MGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDL-----SLRFDISGPGID 504
                                       + LS N+++    +L      +        I 
Sbjct: 678 ----------------------------VTLSYNEIQKFPTELFATGSPIST------II 703

Query: 505 ISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF 564
           +S+N                ++ +N          +    L  +DL  N L+    D   
Sbjct: 704 LSNNLMT-------------SIPENSLKPKDGNYKNTYL-LTTIDLRFNKLTSLSDDFRA 749

Query: 565 -QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKL 623
                L  ++++ N  F   P        +++  + +                D   N++
Sbjct: 750 TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH--------------QRDAEGNRI 794

Query: 624 GGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS 683
               P  I     L+ L +  N++   +  K+     L  LD++ N       +S+    
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851

Query: 684 GLSVMDLSYNNLS 696
              +  L Y+   
Sbjct: 852 EAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 5e-17
 Identities = 26/219 (11%), Positives = 57/219 (26%), Gaps = 32/219 (14%)

Query: 522 TSLNLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANN--- 577
           T L+L+     G +   +  L+  L  L    +  +        +  +  +     +   
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 578 ----NFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGL---VKILDLSSNKLGGGVPKE 630
                 F      +     ++     N      K    +      +   +N++   + K 
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 631 IMDLVGLVALNLSRNNLTG-------------------QITPKIGQLKSLDFLDLSRNQF 671
           I  L  L  +  + +  T                            LK L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 672 FGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNE 710
              +P  L  L  L  ++++ N       L        +
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 23/190 (12%), Positives = 58/190 (30%), Gaps = 21/190 (11%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFS------GSSIPEFLGSLGKLSYLGLSSAEFAG-P 152
           ++   T        ++ + LS N  +               +   L+ + L   +     
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENL-DWLSHLSSLIYLYLDLNDLSNFSNWVQL---- 207
              +   L  L  +D+S+N      +      + S L    +     +  +  ++     
Sbjct: 745 DDFRATTLPYLSNMDVSYNCF---SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 208 LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267
           ++   SL  L + S D+   +   L        L ++D+ +N   +     +     + +
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKLTP-----QLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 268 DRISLPSNQL 277
             +     Q 
Sbjct: 856 YVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 640 LNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI 699
            N   +    Q    +     +  L L+     G +P ++ QL+ L V+    ++ +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 700 PLGTQLQSFNELVY 713
            L    +   ++  
Sbjct: 364 RLFGDEELTPDMSE 377

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (510), Expect = 2e-55
 Identities = 111/594 (18%), Positives = 194/594 (32%), Gaps = 78/594 (13%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
               +DLS N            +  +L +L LS  E           L  L  L L+ N 
Sbjct: 33  STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           +    +    S L+SL  L      L++  +    + +L +L  L++    +      + 
Sbjct: 92  I-QSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVS--SSLVDRISLPSNQLQGSIPEAFGRMVS 290
            +  +  +L  +DL+ N +       L  +     +   + +  N +     +AF + + 
Sbjct: 149 FS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIK 205

Query: 291 LRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELKG--QLSEFIQDLSSGCTKNSLEW 346
           L  L L  N      +   L N+ GL +  L   E K    L  F   +  G    +++ 
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 347 LHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
             L+               +++  ++L    +     + + + FK + L +    L    
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP 323

Query: 406 SEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP 465
                 +L  L +L L  N  ++ F    +P   L+ + L    +            +  
Sbjct: 324 ----TLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNAL----------SFSGC 367

Query: 466 NWFWDLTHQRML-LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL 524
             + DL    +  L+LS N                     I S +F G           L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNG------------------AIIMSANFMGL-----EELQHL 404

Query: 525 NLSKNKFSG--SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK 582
           +   +        S   SL   L+YLD+S           +    SL  L +A N+F   
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNL 642
             +      N  +L                   LDLS  +L          L  L  LN+
Sbjct: 464 TLS--NVFANTTNL-----------------TFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 643 SRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
           S NNL    +    QL SL  LD S N+              L+  +L+ N+++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (430), Expect = 1e-44
 Identities = 91/521 (17%), Positives = 173/521 (33%), Gaps = 54/521 (10%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
           +      A   L HL+ L L+ N    S  P     L  L  L     + A      +G 
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV--QLLSKLHSLTTL 217
           L  L+ L+++ N + S +   + S+L++L+++ L  N +   +      L        +L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 218 SLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSS-----LVDRISL 272
            +    +  I   +   +     L  + L  N  ++++        +      L+     
Sbjct: 187 DMSLNPIDFIQDQAFQGIK----LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 273 PSNQLQGSIPEAFGRMVSLRY--LDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLS 329
               L+   P     +  +      L+              +  +  + L+G        
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS------ 296

Query: 330 EFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF 389
             I+ L         + L +   ++    P L     LK L L  N   G+I      L 
Sbjct: 297 --IKYLEDVPKHFKWQSLSIIRCQLK-QFPTLD-LPFLKSLTLTMN--KGSISFKKVALP 350

Query: 390 KLEMLKLNGNSLGGVISEAL-FSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHC 448
            L  L L+ N+L      +      + L  LDL+ N   +  S +++   +L  +   H 
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 449 KMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDL-----SLRFDISGPGI 503
            +          + T  + F  L      L++S    +     +     SL        +
Sbjct: 410 TL---------KRVTEFSAFLSLEKLL-YLDISYTNTKIDFDGIFLGLTSLNT------L 453

Query: 504 DISSNHFEGPIPP----LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL 559
            ++ N F+           +N T L+LSK +       +    +RL  L++S+N L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 560 PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
              + Q  SL  L+ + N           F  ++   +L N
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 4e-40
 Identities = 96/525 (18%), Positives = 169/525 (32%), Gaps = 82/525 (15%)

Query: 186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID 245
           SS   + L  N L    +     S    L  L L  C++  I   +   L+    L  + 
Sbjct: 32  SSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHH---LSNLI 86

Query: 246 LTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI- 304
           LT N +  S  P  F+  +SL   +     +L        G++++L+ L+++ N +    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLE-NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 305 -PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGE 363
            P +  N+  L  + LS   ++      +Q L           L +S N I        +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE--NPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 364 FSSLKQLNLENNLLNGTIHKSIGQ-LFKLEMLKLNGNSLGG-----VISEALFSNLSRLA 417
              L +L L  N  +  I K+  Q L  L + +L            +   ++   L  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 418 ALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML 477
             +                                               F  L +   +
Sbjct: 263 IDEFRLTYTNDFSDD--------------------------------IVKFHCLANVSAM 290

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISF 537
            +L+   ++       +        + I     +           SL L+ NK S S   
Sbjct: 291 -SLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK 346

Query: 538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQF---DSLVILNLANNNFFGKIPNSMGFLHNIR 594
           + +L + L YLDLS N LS     C +     +SL  L+L+ N     +  +   L  ++
Sbjct: 347 V-ALPS-LSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402

Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITP 653
                                LD   + L         + L  L+ L++S  N       
Sbjct: 403 --------------------HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 654 KIGQLKSLDFLDLSRNQFFGGIPSS-LSQLSGLSVMDLSYNNLSG 697
               L SL+ L ++ N F     S+  +  + L+ +DLS   L  
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (394), Expect = 5e-40
 Identities = 91/505 (18%), Positives = 166/505 (32%), Gaps = 62/505 (12%)

Query: 99  PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAG-PIPHQL 157
           P++     +   L  L  L       + S     +G L  L  L ++        +P   
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 158 GNLSRLQFLDLSFNNL--FSGENLDWLSHLS-SLIYLYLDLNDLSNFSNWVQLLSKLHSL 214
            NL+ L  +DLS+N +   +  +L +L       + L + LN +    +      +   L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA---FQGIKL 206

Query: 215 TTLSLYSC----DLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI 270
             L+L       ++      +L  L+    +      E NL       +  +    +D  
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSE 330
            L            F  + ++  + L+   ++ +          + L +   +LK   + 
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP-KHFKWQSLSIIRCQLKQFPTL 325

Query: 331 F-------------IQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF---SSLKQLNLEN 374
                                    SL +L LS N ++ S          +SL+ L+L  
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 375 NLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDW 434
           N     +  +   L +L+ L    ++L  V   + F +L +L  LD++  +  ++F   +
Sbjct: 386 NGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 435 IPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSL 494
           +    LNT+ +                NT+ N F + T+    L+LS  Q+         
Sbjct: 445 LGLTSLNTLKMAGNSF---------KDNTLSNVFANTTNLTF-LDLSKCQLEQ------- 487

Query: 495 RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL 554
                     IS   F+            LN+S N      S   +    L  LD S N 
Sbjct: 488 ----------ISWGVFDT-----LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 555 LSGKLPDCWFQFDSLVILNLANNNF 579
           +            SL   NL NN+ 
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (342), Expect = 2e-33
 Identities = 91/497 (18%), Positives = 151/497 (30%), Gaps = 100/497 (20%)

Query: 229 PSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRM 288
           P SL               +  L+  V   +    SS    I L  N L+     +F   
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLS-KVPDDIP---SSTK-NIDLSFNPLKILKSYSFSNF 55

Query: 289 VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
             L++LDLS  E+  I                         +    L        L  L 
Sbjct: 56  SELQWLDLSRCEIETIE-----------------------DKAWHGLH------HLSNLI 86

Query: 349 LSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
           L+ N I    P      +SL+ L      L       IGQL  L+ L +  N +      
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
           A FSNL+ L  +DL+ N +        I    L                          +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQT------ITVNDL-------------------------QF 175

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPD----LSLRFDISGPGIDISSNHFEGPIPPLP----S 519
             +     + L++S N +          + L        + +  N     I        +
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE------LTLRGNFNSSNIMKTCLQNLA 229

Query: 520 NATSLNLSKNKFSGSISF----------LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSL 569
                 L   +F    +           LC ++  +    L+           +    ++
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT--IDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSL-YNRSQYEYKSTLGLVKILDLSSNKLGGGVP 628
             ++LA  +   K    +      +SLS+   + +      L  +K L L+ NK    + 
Sbjct: 288 SAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SIS 343

Query: 629 KEIMDLVGLVALNLSRNNLT--GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLS 686
            + + L  L  L+LSRN L+  G  +       SL  LDLS N     + ++   L  L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 687 VMDLSYNNLSGKIPLGT 703
            +D  ++ L        
Sbjct: 403 HLDFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 8e-26
 Identities = 87/449 (19%), Positives = 136/449 (30%), Gaps = 84/449 (18%)

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
           GS+      + ++        +L  +P  + +    K + LS   LK   S    + S  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE- 57

Query: 339 CTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397
                L+WL LS  EI             L  L L  N +      S   L  LE L   
Sbjct: 58  -----LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 398 GNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKW 457
              L  + S      L  L  L++A N +        +P +  N  +L H          
Sbjct: 113 ETKLASLESFP-IGQLITLKKLNVAHNFIH----SCKLPAYFSNLTNLVH---------- 157

Query: 458 LQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL 517
                               ++LS N ++                  I+ N  +  +   
Sbjct: 158 --------------------VDLSYNYIQT-----------------ITVNDLQF-LREN 179

Query: 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLAN 576
           P    SL++S N     I        +L  L L  N  S  +   C      L +  L  
Sbjct: 180 PQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 577 NNFFGKI------PNSMGFLHNIRSLSL---YNRSQYEYKST---LGLVKILDLSSNKLG 624
             F  +       P+ M  L ++        Y     +       L  V  + L+   + 
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSG 684
               +++       +L++ R  L    T     L  L  L L+ N+  G I      L  
Sbjct: 299 Y--LEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNK--GSISFKKVALPS 351

Query: 685 LSVMDLSYNNLSGKIPLGTQLQSFNELVY 713
           LS +DLS N LS            N L +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 31/202 (15%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           ++   + L+ L +LD   +     +      SL KL YL +S              L+ L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
             L ++ N+       +  ++ ++L +L L    L   S    +   LH L  L++   +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW--GVFDTLHRLQLLNMSHNN 508

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           L  +  S    L    SL  +D +                           N+++ S   
Sbjct: 509 LLFLDSSHYNQL---YSLSTLDCS--------------------------FNRIETSKGI 539

Query: 284 AFGRMVSLRYLDLSSNELRGIP 305
                 SL + +L++N +  I 
Sbjct: 540 LQHFPKSLAFFNLTNNSVACIC 561

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 3e-53
 Identities = 87/336 (25%), Positives = 139/336 (41%), Gaps = 72/336 (21%)

Query: 399 NSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWL 458
            +  GV+ +   +   R+  LDL+  +L   +    IP       SL             
Sbjct: 36  RTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYP---IPS------SLA------------ 73

Query: 459 QTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD-----LSLRFDISGPGIDISSNHFEGP 513
                      +L +   L     N + G +P        L +      + I+  +  G 
Sbjct: 74  -----------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY------LYITHTNVSGA 116

Query: 514 IPPLPSNATSL---NLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSL 569
           IP   S   +L   + S N  SG++   + SL N L+ +    N +SG +PD +  F  L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKL 175

Query: 570 V-ILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVP 628
              + ++ N   GKIP +        +L+L                 +DLS N L G   
Sbjct: 176 FTSMTISRNRLTGKIPPTFA------NLNL---------------AFVDLSRNMLEGDAS 214

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM 688
                      ++L++N+L   +  K+G  K+L+ LDL  N+ +G +P  L+QL  L  +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 689 DLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724
           ++S+NNL G+IP G  LQ F+   YA N  LCG PL
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (467), Expect = 2e-52
 Identities = 93/396 (23%), Positives = 152/396 (38%), Gaps = 100/396 (25%)

Query: 35  RCIDEEREALLTFKASLVDESGILSSWRREDEKRDCC--KWTGVGCSKRTGHVNKLDLQP 92
            C  ++++ALL  K  L + +  LSSW       DCC   W GV C   T          
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDT---------- 47

Query: 93  IGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSA-EFA 150
                            +   +  LDLS  N      IP  L +L  L++L +       
Sbjct: 48  -----------------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 151 GPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK 210
           GPIP  +  L++L +L ++  N+ SG   D+LS + +L+ L    N LS           
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGT--------- 140

Query: 211 LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI 270
                            +P S+ +L +   L  I    N ++ ++     + S  L   +
Sbjct: 141 -----------------LPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSK-LFTSM 179

Query: 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLS 329
           ++  N+L G IP  F  + +L ++DLS N L G      G+                   
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD------------------ 220

Query: 330 EFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF 389
                        + + +HL+ N +   +  +G   +L  L+L NN + GT+ + + QL 
Sbjct: 221 ------------KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS 425
            L  L ++ N+L G I +    NL R      A+N 
Sbjct: 269 FLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (371), Expect = 3e-39
 Identities = 77/345 (22%), Positives = 127/345 (36%), Gaps = 77/345 (22%)

Query: 264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG---IPKFLGNMCGLKILYLS 320
           SS +      +    G + +   +   +  LDLS   L     IP  L N+  L  LY+ 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 321 G-KELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNLENNLLN 378
           G   L G +   I  L+       L +L+++   ++G++P  L +  +L  L+   N L+
Sbjct: 85  GINNLVGPIPPAIAKLTQ------LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 379 GTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF 438
           GT+  SI  L  L  +  +GN + G I ++  S      ++ ++ N LT +     IPP 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----IPP- 192

Query: 439 QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDI 498
                +  +  +                           ++LS N               
Sbjct: 193 -----TFANLNLA-------------------------FVDLSRNM-------------- 208

Query: 499 SGPGIDISSNHFEGPIPPLPSNATSL---NLSKNKFSGSISFLCSLSNRLIYLDLSNNLL 555
                       EG    L  +  +    +L+KN  +  +  +    N L  LDL NN +
Sbjct: 209 -----------LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGLDLRNNRI 256

Query: 556 SGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
            G LP    Q   L  LN++ NN  G+IP   G L      +  N
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (291), Expect = 1e-28
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 8/179 (4%)

Query: 530 KFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG--KIPNSM 587
           +    +    +LS+ L   D  N    G L D   Q   +  L+L+  N      IP+S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 588 GFLHNIRSLSLYNRSQYEYK-----STLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNL 642
             L  +  L +   +          + L  +  L ++   + G +P  +  +  LV L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 643 SRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLS-VMDLSYNNLSGKIP 700
           S N L+G + P I  L +L  +    N+  G IP S    S L   M +S N L+GKIP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.9 bits (154), Expect = 7e-11
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
           L   +   +   ++L  LDL  N   G+ +P+ L  L  L  L +S     G IP Q GN
Sbjct: 233 LAFDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 160 LSRLQFLDLSFNNLFSGENL 179
           L R      + N    G  L
Sbjct: 290 LQRFDVSAYANNKCLCGSPL 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  175 bits (445), Expect = 8e-46
 Identities = 128/628 (20%), Positives = 214/628 (34%), Gaps = 88/628 (14%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
           +   L+ L  L+L       +   E   +L  L  L L S++     P     L  L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 167 DLSFNNLFSGE-NLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
            L F  L        +  +L +L  L L  N + +         KL+SL ++   S  + 
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIF 161

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            +    L  L    +L    L  N+L  S     +    +    + L    + G+     
Sbjct: 162 LVCEHELEPL-QGKTLSFFSLAANSLY-SRVSVDWGKCMNPFRNMVLEILDVSGN----- 214

Query: 286 GRMVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSL 344
               ++      SN +     F L     +             + +  Q+  +G  ++S+
Sbjct: 215 --GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH----NIKDPDQNTFAGLARSSV 268

Query: 345 EWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGG 403
             L LS   +             LK LNL  N +N    ++   L  L++L L+ N LG 
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 404 VISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNT 463
           + S   F  L ++A +DL  N + +     +    +L T                     
Sbjct: 329 LYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT--------------------- 366

Query: 464 VPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATS 523
                         L+L  N +       ++ F  S P I +S N     +P +   A  
Sbjct: 367 --------------LDLRDNALT------TIHFIPSIPDIFLSGNKLVT-LPKINLTANL 405

Query: 524 LNLSKNKFSG--SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFF 580
           ++LS+N+      + FL  + + L  L L+ N  S    D       SL  L L  N   
Sbjct: 406 IHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML- 463

Query: 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVAL 640
                 + +   +                L  +++L L+ N L    P     L  L  L
Sbjct: 464 -----QLAWETELCWDVFEG---------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 641 NLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
           +L+ N LT           +L+ LD+SRNQ     P        LSV+D+++N    +  
Sbjct: 510 SLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICEC- 563

Query: 701 LGTQLQSFNELVYAGNPELCGLPLRNKC 728
              +L +F   +   N  + G P    C
Sbjct: 564 ---ELSTFINWLNHTNVTIAGPPADIYC 588

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (296), Expect = 2e-27
 Identities = 84/401 (20%), Positives = 136/401 (33%), Gaps = 41/401 (10%)

Query: 86  NKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLG-SLGKLSYLGL 144
           N   +   G  S  +      +L+   H+       +N        F G +   + +L L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 145 SSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNW 204
           S              L  L+ L+L++N +    + +    L +L  L L  N L    + 
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 205 VQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS 264
                 L  +  + L    +  I   +   L     L+ +DL +N LT        +   
Sbjct: 333 N--FYGLPKVAYIDLQKNHIAIIQDQTFKFL---EKLQTLDLRDNALTT------IHFIP 381

Query: 265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGK 322
           S+ D I L  N+L            +   + LS N L  +    FL  +  L+IL L+  
Sbjct: 382 SIPD-IFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 323 ELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN------LGEFSSLKQLNLENNL 376
                  +     +      SLE L L  N +  +             S L+ L L +N 
Sbjct: 437 RFSSCSGDQTPSENP-----SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 377 LNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIP 436
           LN         L  L  L LN N L  +    L +NL     LD++ N L    + D   
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI---LDISRNQLL-APNPDVFV 547

Query: 437 PFQLNTIS----LGHCKMGPRFPKWLQTQN-TVPNWFWDLT 472
              +  I+    +  C++   F  WL   N T+     D+ 
Sbjct: 548 SLSVLDITHNKFICECELST-FINWLNHTNVTIAGPPADIY 587

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (282), Expect = 9e-26
 Identities = 89/457 (19%), Positives = 154/457 (33%), Gaps = 70/457 (15%)

Query: 289 VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
              R        L  +P+ L      + L LS   ++   +     L        L+ L 
Sbjct: 4   FDGRIAFYRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLE------QLQLLE 54

Query: 349 LSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL-GGVI 405
           L S     ++         +L+ L+L ++ +      +   LF L  L+L    L   V+
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 406 SEALFSNLSRLAALDLADNSLT-LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTV 464
            +  F NL  L  LDL+ N +  L     +     L +I     ++              
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI----------FLVC 164

Query: 465 PNWFWDLTHQR-MLLNLSSNQMRGKVPDLSLRF-----DISGPGIDISSNHFEGPIPPLP 518
            +    L  +     +L++N +  +V     +      ++    +D+S N +   I    
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 519 SNATS---------------LNLSKNKFS----GSISFLCSLSNRLIYLDLSNNLLSGKL 559
           SNA S                    +        + + L   S  + +LDLS+  +    
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHLDLSHGFVFSLN 282

Query: 560 PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNRSQYEYKST---LGLVKI 615
              +     L +LNLA N        +   L N++ L+L YN     Y S    L  V  
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 616 LDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG-QITP----------KIGQLKSLDF- 663
           +DL  N +     +    L  L  L+L  N LT     P          K+  L  ++  
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 664 ---LDLSRNQFFG-GIPSSLSQLSGLSVMDLSYNNLS 696
              + LS N+     I   L ++  L ++ L+ N  S
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 13/184 (7%)

Query: 87  KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS 146
           +L L                    L HL  L L+ N  +    P     L  L  L L+S
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP-PGVFSHLTALRGLSLNS 513

Query: 147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN---DLSNFSN 203
                   + L   + L+ LD+S N L    N D    LS L   +       +LS F N
Sbjct: 514 NRLTVLSHNDL--PANLEILDISRNQL-LAPNPDVFVSLSVLDITHNKFICECELSTFIN 570

Query: 204 WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVS 263
           W+   +   +     +Y          SL +L++          E  +  S+   LF V 
Sbjct: 571 WLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE------GCDEEEVLKSLKFSLFIVC 624

Query: 264 SSLV 267
           +  +
Sbjct: 625 TVTL 628

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (386), Expect = 4e-39
 Identities = 115/555 (20%), Positives = 204/555 (36%), Gaps = 70/555 (12%)

Query: 186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID 245
            S   L L  N L +  ++         L  L L  C++  I   +  +L+    L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLI 82

Query: 246 LTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI- 304
           LT N +  S+    F+  SSL  ++      L        G + +L+ L+++ N ++   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQ-KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 305 -PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGE 363
            P++  N+  L+ L LS  +++      ++ L           L LS N +    P   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 364 FSSLKQLNLENNLLNGTI-HKSIGQLFKLEMLKLNGNSLGG-----VISEALFSNLSRLA 417
              L +L L NN  +  +    I  L  LE+ +L               ++    L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 418 ALDLADNSLTLEFSHDWIPPFQ----LNTISLGHCKMGPRFPKWLQTQNTVPNW-FWDLT 472
             +     L   +  D I  F     +++ SL    +             V ++ +    
Sbjct: 259 IEEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTI-----------ERVKDFSYNFGW 306

Query: 473 HQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP-SNATSLNLSKNKF 531
               L+N    Q     P L L+   S   +  +SN        +   +   L+LS+N  
Sbjct: 307 QHLELVNCKFGQ----FPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 532 SGSISFLCSLSN--RLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGF 589
           S       S      L YLDLS N +   +   +   + L  L+  ++N   ++      
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEF-SV 416

Query: 590 LHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRNNLT 648
             ++R+L                   LD+S           I + L  L  L ++ N+  
Sbjct: 417 FLSLRNL-----------------IYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 649 GQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT--QL 705
               P I  +L++L FLDLS+ Q     P++ + LS L V++++ N L   +P G   +L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRL 517

Query: 706 QSFNELVYAGNPELC 720
            S  ++    NP  C
Sbjct: 518 TSLQKIWLHTNPWDC 532

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 9e-38
 Identities = 116/571 (20%), Positives = 188/571 (32%), Gaps = 81/571 (14%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
               LDLS N            S  +L  L LS  E          +LS L  L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           +     L   S LSSL  L     +L++  N+   +  L +L  L++    +        
Sbjct: 88  I-QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSL---VDRISLPSNQLQGSIPEAFGRMV 289
              ++  +LE +DL+ N +  S+Y     V   +      + L  N +    P AF + +
Sbjct: 145 --FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 200

Query: 290 SLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELKG--QLSEFIQDLSSGCTKNSLE 345
            L  L L +N      +   +  + GL++  L   E +    L +F +    G    ++E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 346 WLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGG 403
              L+  +             +++   +L +  +      S    F  + L+L     G 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ 318

Query: 404 VISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNT 463
                    L  L  L    N     FS   +P   L  + L            L  +  
Sbjct: 319 FP----TLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNG--------LSFKGC 364

Query: 464 VPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATS 523
                +  T  +  L+LS N +                 I +SSN        L      
Sbjct: 365 CSQSDFGTTSLK-YLDLSFNGV-----------------ITMSSN-----FLGLE-QLEH 400

Query: 524 LNLSKNKFSG--SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
           L+   +        S   SL N LIYLD+S+          +    SL +L +A N+F  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVAL 640
                      +R+L                   LDLS  +L   +     + L  L  L
Sbjct: 460 NFLP--DIFTELRNL-----------------TFLDLSQCQL-EQLSPTAFNSLSSLQVL 499

Query: 641 NLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           N++ N L         +L SL  + L  N +
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (295), Expect = 1e-27
 Identities = 87/417 (20%), Positives = 145/417 (34%), Gaps = 35/417 (8%)

Query: 103 KITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLS---SAEFAGPIPHQLGN 159
           K+      L +L +LDLS N    S     L  L ++  L LS   S      I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQL----LSKLHSLT 215
             RL  L L  N          +  L+ L    L L +  N  N  +     L  L +LT
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 216 TLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN 275
                   L   +   +   N   ++    L    +   V  + +N     ++ ++    
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFG 317

Query: 276 QLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDL 335
           Q          ++ SL+ L  +SN+       + ++  L+ L LS   L           
Sbjct: 318 QFP------TLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGL--SFKGCCSQS 368

Query: 336 SSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSI-GQLFKLEML 394
             G T  SL++L LS N +     N      L+ L+ +++ L      S+   L  L  L
Sbjct: 369 DFGTT--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 395 KLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTISLGHCKMGPR 453
            ++        +   F+ LS L  L +A NS    F  D       L  + L  C++   
Sbjct: 427 DISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--- 482

Query: 454 FPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
                     +    ++      +LN++SNQ++  VPD       S   I + +N +
Sbjct: 483 --------EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (290), Expect = 5e-27
 Identities = 72/356 (20%), Positives = 122/356 (34%), Gaps = 41/356 (11%)

Query: 90  LQPIGFDSFPLRGKITPALLKLQHLTY----LDLSRNNFSGSSIPEFLGSLGKLSYLGLS 145
           L+ +   S  ++      L  L  +      LDLS N  +   I        +L  L L 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLHKLTLR 208

Query: 146 SAEFAGPIPHQ-LGNLSRLQFLDLSFNNLFSGENL-----DWLSHLSSLIYLYLDLNDLS 199
           +   +  +    +  L+ L+   L      +  NL       L  L +L      L  L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 200 NFSNWVQ-LLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW 258
            + + +  L + L ++++ SL S  +  +             LE+++             
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 259 LFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCG---LK 315
           L         R++  SN+   +   +   + SL +LDLS N L        +  G   LK
Sbjct: 327 L--------KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTK-NSLEWLHLSSNEITGSMPNLGEF---SSLKQLN 371
            L LS           +  +SS       LE L    + +   M     F    +L  L+
Sbjct: 377 YLDLSFNG--------VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 427

Query: 372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           + +       +     L  LE+LK+ GNS        +F+ L  L  LDL+   L 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (351), Expect = 3e-35
 Identities = 100/498 (20%), Positives = 196/498 (39%), Gaps = 73/498 (14%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
                L       L + N +          L +++ L              +  L+ L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           ++ S N L    ++  L +L+ L+ + ++ N +++ +     L+ L +LT L+L++  + 
Sbjct: 73  INFSNNQL---TDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 125

Query: 226 PIIP-SSLLNLN----SSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD--------RISL 272
            I P  +L NLN    SSN++  I    + LT+       N  + L          R+ +
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFI 332
            SN++  S      ++ +L  L  ++N++  I   LG +  L  L L+G +LK       
Sbjct: 185 SSNKV--SDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK------- 234

Query: 333 QDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE 392
            D+ +  +  +L  L L++N+I+ ++  L   + L +L L  N ++      +  L  L 
Sbjct: 235 -DIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNIS--PLAGLTALT 290

Query: 393 MLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHC 448
            L+LN N L  +      SNL  L  L L  N+++       I P     +L  +   + 
Sbjct: 291 NLELNENQLEDISP---ISNLKNLTYLTLYFNNIS------DISPVSSLTKLQRLFFYNN 341

Query: 449 KMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508
           K+            +  +   +LT+    L+   NQ+    P  +L        + ++  
Sbjct: 342 KV------------SDVSSLANLTNINW-LSAGHNQISDLTPLANLT---RITQLGLNDQ 385

Query: 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSN--RLIYLDLSNNLLSGKLPDCWFQF 566
            +        +N +  N  KN  +G++    ++S+       D++ NL S    +  + F
Sbjct: 386 AWTNAPVNYKANVSIPNTVKN-VTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTF 443

Query: 567 DSLVILNLANNNFFGKIP 584
              V +      F G + 
Sbjct: 444 SQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 1e-33
 Identities = 106/531 (19%), Positives = 189/531 (35%), Gaps = 94/531 (17%)

Query: 157 LGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTT 216
              L+      L   N+    +    + L  +  L  D   + +       +  L++LT 
Sbjct: 20  DTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQ 72

Query: 217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ 276
           ++  +  L     + +  L +   L  I +  N + +     L N+++  +  ++L +NQ
Sbjct: 73  INFSNNQL-----TDITPLKNLTKLVDILMNNNQIADI--TPLANLTN--LTGLTLFNNQ 123

Query: 277 LQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336
           +    P     + +L  L+LSSN +  I   L  +  L+ L    +         + DL 
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ---------VTDLK 171

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKL 396
                 +LE L +SSN+++  +  L + ++L+ L   NN ++      +G L  L+ L L
Sbjct: 172 PLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSL 228

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPK 456
           NGN L  + +    ++L+ L  LDLA+N ++             N   L           
Sbjct: 229 NGNQLKDIGT---LASLTNLTDLDLANNQIS-------------NLAPLSGLT------- 265

Query: 457 WLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLS----LRFDISGPGIDISSNHFEG 512
                         LT     L L +NQ+   +  L+    L        ++++ N  E 
Sbjct: 266 -------------KLTE----LKLGANQIS-NISPLAGLTALTN------LELNENQLED 301

Query: 513 PIPPLP--SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLV 570
            I P+    N T L L  N  S  IS + SL+  L  L   NN +S           ++ 
Sbjct: 302 -ISPISNLKNLTYLTLYFNNIS-DISPVSSLTK-LQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 571 ILNLANNNFFGKIPNSMGFLHNIRSLSL-YNRSQYEYKSTLGLVKILDLSSNKLGGGV-P 628
            L+  +N      P  +  L  I  L L          +    V I +   N  G  + P
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
             I D       +++ N  +               +      F G +   L
Sbjct: 415 ATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (315), Expect = 1e-30
 Identities = 97/543 (17%), Positives = 190/543 (34%), Gaps = 114/543 (20%)

Query: 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
            L    ++ +   +   +   + L+  +   L   ++++  +     + L  +TTL    
Sbjct: 2   PLGSATITQDTPIN--QIFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADR 55

Query: 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI 281
             +      S+  +   N+L  I+ + N LT+                            
Sbjct: 56  LGI-----KSIDGVEYLNNLTQINFSNNQLTDI--------------------------- 83

Query: 282 PEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTK 341
                 +  L  + +++N++  I   L N+  L  L L   ++     + +++L++    
Sbjct: 84  -TPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITD--IDPLKNLTN---- 135

Query: 342 NSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
             L  L LSSN I+  +  L   +SL+QL+  N + +    K +  L  LE L ++ N +
Sbjct: 136 --LNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV 189

Query: 402 GGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKMGPRFPKW 457
             +      + L+ L +L   +N ++       I P      L+ +SL   ++       
Sbjct: 190 SDISV---LAKLTNLESLIATNNQISD------ITPLGILTNLDELSLNGNQL------- 233

Query: 458 LQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL 517
                        LT+   L +L++NQ+    P   L                       
Sbjct: 234 -----KDIGTLASLTNLTDL-DLANNQISNLAPLSGL----------------------- 264

Query: 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANN 577
            +  T L L  N+ S +IS L  L+  L  L+L+ N L    P       +L  L L  N
Sbjct: 265 -TKLTELKLGANQIS-NISPLAGLTA-LTNLELNENQLEDISPIS--NLKNLTYLTLYFN 319

Query: 578 NFFGKIPNSMGFLHNIRSLSLYN--RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV 635
           N     P  +  L  ++ L  YN   S     + L  +  L    N++       + +L 
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLT 375

Query: 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
            +  L L+    T         +   + +           P+++S     +  D+++N  
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

Query: 696 SGK 698
           S  
Sbjct: 434 SYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (290), Expect = 2e-27
 Identities = 85/444 (19%), Positives = 154/444 (34%), Gaps = 67/444 (15%)

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           +       L    +        ++  +  L      +K    + ++ L++      L  +
Sbjct: 23  LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI--DGVEYLNN------LTQI 73

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
           + S+N++T  +  L   + L  + + NN +       +  L  L  L L  N +  +   
Sbjct: 74  NFSNNQLT-DITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP- 129

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKMGPRFPKWLQTQNT 463
               NL+ L  L+L+ N+++       I        L  +S G+     +    L T   
Sbjct: 130 --LKNLTNLNRLELSSNTISD------ISALSGLTSLQQLSFGNQVTDLKPLANLTT--- 178

Query: 464 VPNWFWDLTHQRMLLNLSSNQMRGKVPDLS----LRFDISGPGIDISSNHFEGPIPPLP- 518
                  L      L++SSN++   +  L+    L        +  ++N     I PL  
Sbjct: 179 -------LER----LDISSNKVSD-ISVLAKLTNLES------LIATNNQISD-ITPLGI 219

Query: 519 -SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANN 577
            +N   L+L+ N+    I  L SL+N L  LDL+NN +S   P        L  L L  N
Sbjct: 220 LTNLDELSLNGNQLK-DIGTLASLTN-LTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275

Query: 578 NFFGKIPNSMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV 635
                 P  +  L  + +L L           S L  +  L L  N +       +  L 
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLT 331

Query: 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
            L  L    N ++      +  L ++++L    NQ     P  L+ L+ ++ + L+    
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 696 SGKIPLGTQLQSFNELVYAGNPEL 719
           +          S    V      L
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGAL 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 5e-34
 Identities = 94/522 (18%), Positives = 182/522 (34%), Gaps = 62/522 (11%)

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           +       S      IPS L     + +++ +DL+ N +T  +        ++L   + L
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL-----TAAMKSLDLSFNKIT-YIGHGDLRACANLQ-VLIL 57

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKG-QLSE 330
            S+++     +AF  + SL +LDLS N L  +   + G +  LK L L G   +   ++ 
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 331 FIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQL 388
              +L+      +L+ L + + E    +        +SL +L ++   L     +S+  +
Sbjct: 118 LFPNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 389 FKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT--------LEFSHDWIPPFQL 440
             +  L L+ +     + E     LS +  L+L D +L         ++     +     
Sbjct: 172 RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 441 NTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISG 500
               L                      F D T    L + + ++    V +L     ++ 
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNPSES-DVVSELGKVETVTI 288

Query: 501 PGIDISSNHFEGPIPPLPSNATS---LNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG 557
             + I   +    +  + S       + +  +K              L +LDLS NL+  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 558 KL---PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVK 614
           +      C   + SL  L L+ N+    +  +   L  +++L                  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNL-----------------T 390

Query: 615 ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
            LD+S N     +P        +  LNLS   +   +   I   ++L+ LD+S N     
Sbjct: 391 SLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN-LDS 445

Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
               L +L  L    +S N L   +P  +       +  + N
Sbjct: 446 FSLFLPRLQEL---YISRNKLK-TLPDASLFPVLLVMKISRN 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (344), Expect = 7e-34
 Identities = 93/533 (17%), Positives = 186/533 (34%), Gaps = 79/533 (14%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
               D    +F+  SIP  L     +  L LS  +        L   + LQ L L  + +
Sbjct: 7   SGVCDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
            +    D    L SL +L L  N LS+ S+       L SL  L+L       +  +SL 
Sbjct: 63  -NTIEGDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSL- 118

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY 293
              +  +L+ + +      + +    F   +SL   + + +  L+    ++   +  + +
Sbjct: 119 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 294 LDLSSNELRGIPKFLGN-MCGLKILYLSGKELKG-------------------------- 326
           L L  +E   + +   + +  ++ L L    L                            
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 327 --------QLSEFIQDLS----SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLEN 374
                   +L  +I +LS      CT N L   + S +++   +  + E  ++++L++  
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQ 295

Query: 375 NLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDW 434
             L   +      L K++ + +  + +  ++  +   +L  L  LDL++N +  E+  + 
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 435 IPPFQ---LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD 491
                   L T+ L            L++          L +    L++S N        
Sbjct: 355 ACKGAWPSLQTLVLSQNH--------LRSMQKTGEILLTLKNLTS-LDISRNTFH----- 400

Query: 492 LSLRFDISGPG----IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIY 547
             +      P     +++SS         +P     L++S N       FL  L      
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ----E 455

Query: 548 LDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
           L +S N L   LPD    F  L+++ ++ N            L +++ + L+ 
Sbjct: 456 LYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (338), Expect = 4e-33
 Identities = 101/568 (17%), Positives = 184/568 (32%), Gaps = 81/568 (14%)

Query: 139 LSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDL 198
                 +S      IP  L   + ++ LDLSFN +    + D L   ++L  L L  + +
Sbjct: 12  GRSRSFTS------IPSGL--TAAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRI 62

Query: 199 SNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW 258
           +           L SL  L L    L  +  S    L+S   L+ ++L  N         
Sbjct: 63  NTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS---LKYLNLMGNPYQTLGVTS 117

Query: 259 LFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKI 316
           LF   ++L   + + + +    I    F  + SL  L++ +  LR      L ++  +  
Sbjct: 118 LFPNLTNLQ-TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 317 LYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENN 375
           L L   E    L  F   LSS      + +L L    +     + L        +     
Sbjct: 177 LTLHLSESAFLLEIFADILSS------VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 376 LLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWI 435
             +    +S  +L KL    L        +SE  F + +     D   +   +      +
Sbjct: 231 RGSVLTDESFNELLKLLRYILE-------LSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 436 PPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLR 495
               +  + +    +                    +      + + ++++          
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYS-------LLEKVKR----ITVENSKVF--------- 323

Query: 496 FDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSN---RLIYLDLSN 552
                    +  +  +     L S    L+LS+N          +       L  L LS 
Sbjct: 324 --------LVPCSFSQH----LKSL-EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 553 NLLSGKLPDCWFQFD---SLVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNRSQYEYKS 608
           N L   +           +L  L+++ N F   +P+S  +   +R L+L     +     
Sbjct: 371 NHLR-SMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 609 TLGLVKILDLSSNKLGGGVPKEI-MDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLS 667
               +++LD+S+N L         + L  L  L +SRN L     P       L  + +S
Sbjct: 429 IPQTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK--TLPDASLFPVLLVMKIS 481

Query: 668 RNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
           RNQ          +L+ L  + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (282), Expect = 5e-26
 Identities = 63/356 (17%), Positives = 129/356 (36%), Gaps = 30/356 (8%)

Query: 88  LDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA 147
           L+L    + +  +          L +L  L +                L  L+ L + + 
Sbjct: 103 LNLMGNPYQTLGVTS----LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 148 EFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV-Q 206
                    L ++  +  L L  +       +     LSS+ YL L   +L+ F      
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTNLARFQFSPLP 217

Query: 207 LLSKLHSLTTLSLYSCDLPPI----IPSSLLNLNSSNSLEVIDLTENNLT------NSVY 256
           +      +  L+     L       +   L  +   + +E  D T N L       + V 
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 257 PWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLK 315
             L  V +  + R+ +P   L   +   +  +  ++ + + ++++  +P  F  ++  L+
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGE----FSSLKQLN 371
            L LS   +     E++++ +      SL+ L LS N +  SM   GE      +L  L+
Sbjct: 338 FLDLSENLMV---EEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLD 393

Query: 372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           +  N  +  +  S     K+  L L+   +  V+   +   L     LD+++N+L 
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQTLEV---LDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 51/296 (17%), Positives = 96/296 (32%), Gaps = 72/296 (24%)

Query: 83  GHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYL 142
           G V  + ++ +    F L   ++     L+ +  + +  +      +P            
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQ------- 331

Query: 143 GLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFS--GENLDWLSHLSSLIYLYLDLNDLSN 200
                           +L  L+FLDLS N +     +N        SL  L L  N L +
Sbjct: 332 ----------------HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 201 FSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLF 260
                ++L  L +LT+L +      P +P S         +  ++L+   +         
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWP---EKMRFLNLSSTGIR-------- 423

Query: 261 NVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320
                      + +   Q           +L  LD+S+N L     FL     L+ LY+S
Sbjct: 424 ----------VVKTCIPQ-----------TLEVLDVSNNNLDSFSLFLPR---LQELYIS 459

Query: 321 GKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENN 375
                      ++ L        L  + +S N++           +SL+++ L  N
Sbjct: 460 RN--------KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 12/259 (4%)

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP----SNATSLNLSKNKFSG 533
           L+LS N++   +    LR   +   + + S+     I         +   L+LS N  S 
Sbjct: 31  LDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 534 SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFGKIPNSM-GFLH 591
             S      + L YL+L  N          F    +L  L + N   F +I       L 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 592 NIRSLSLYNRSQYEYKS----TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL 647
           ++  L +   S   Y+S    ++  +  L L  ++    +      L  +  L L   NL
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 648 TGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
                  +   +    +     +       S ++L  L    L  + +         L  
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 708 FNELVYAGNPELCGLPLRN 726
           FN        EL  +    
Sbjct: 269 FNPSESDVVSELGKVETVT 287

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 2e-33
 Identities = 69/322 (21%), Positives = 136/322 (42%), Gaps = 35/322 (10%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             +  L +L YL+L+ N  +       L +L KL+ L + + +        L NL+ L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRE 114

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           L L+ +N+    ++  L++L+ +  L L  N   +    +  LS +  L  L++    + 
Sbjct: 115 LYLNEDNI---SDISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKV- 167

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
                 +  + +   L  + L  N + +     L +++S  +   +   NQ+    P   
Sbjct: 168 ----KDVTPIANLTDLYSLSLNYNQIEDI--SPLASLTS--LHYFTAYVNQITDITP--V 217

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
             M  L  L + +N++  +   L N+  L  L +   +        I D+++      L+
Sbjct: 218 ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQ--------ISDINAVKDLTKLK 268

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
            L++ SN+I+  +  L   S L  L L NN L     + IG L  L  L L+ N +  + 
Sbjct: 269 MLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 406 SEALFSNLSRLAALDLADNSLT 427
                ++LS++ + D A+  + 
Sbjct: 328 P---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 2e-32
 Identities = 65/326 (19%), Positives = 136/326 (41%), Gaps = 38/326 (11%)

Query: 102 GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS 161
            +I P    L       L + + +          L  ++ L ++  + A      +  L+
Sbjct: 13  NQIFP-DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG--IEYLT 66

Query: 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
            L++L+L+ N +    ++  LS+L  L  LY+  N +++ S     L  L +L  L L  
Sbjct: 67  NLEYLNLNGNQI---TDISPLSNLVKLTNLYIGTNKITDISA----LQNLTNLRELYLNE 119

Query: 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI 281
            ++     S +  L +   +  ++L  N+  + +   L N++   ++ +++  ++++   
Sbjct: 120 DNI-----SDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTG--LNYLTVTESKVKDVT 171

Query: 282 PEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTK 341
           P     +  L  L L+ N++  I   L ++  L        +        I D++     
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQ--------ITDITPVANM 220

Query: 342 NSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
             L  L + +N+IT  +  L   S L  L +  N ++     ++  L KL+ML +  N +
Sbjct: 221 TRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277

Query: 402 GGVISEALFSNLSRLAALDLADNSLT 427
             +      +NLS+L +L L +N L 
Sbjct: 278 SDISV---LNNLSQLNSLFLNNNQLG 300

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 4e-30
 Identities = 79/449 (17%), Positives = 156/449 (34%), Gaps = 110/449 (24%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
              L       +          L +     L  A     +      L  +  L ++   +
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
               ++  + +L++L YL L+ N +++ S     LS L  LT L + +  +     + + 
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKI-----TDIS 104

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY 293
            L +  +L  + L E+N+++                                  +  +  
Sbjct: 105 ALQNLTNLRELYLNEDNISD----------------------------ISPLANLTKMYS 136

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
           L+L +N        L NM GL  L ++  ++K      I +L+       L  L L+ N+
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLT------DLYSLSLNYNQ 188

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           I   +  L   +SL       N +       +  + +L  LK+  N +  +      +NL
Sbjct: 189 IE-DISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP---LANL 242

Query: 414 SRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKMGPRFPKWLQTQNTVPNWFW 469
           S+L  L++  N ++       I       +L  +++G  ++           + +     
Sbjct: 243 SQLTWLEIGTNQISD------INAVKDLTKLKMLNVGSNQI-----------SDISV--- 282

Query: 470 DLTHQRML--LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLS 527
            L +   L  L L++NQ+  +  +                      I  L  N T+L LS
Sbjct: 283 -LNNLSQLNSLFLNNNQLGNEDME---------------------VIGGLT-NLTTLFLS 319

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLS 556
           +N  +  I  L SLS  +   D +N ++ 
Sbjct: 320 QNHIT-DIRPLASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 6e-27
 Identities = 73/411 (17%), Positives = 145/411 (35%), Gaps = 77/411 (18%)

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
           L      +  I     ++       L    +        ++L S      +  L ++  +
Sbjct: 5   LATLPAPINQIFP-DADLAEGIRAVLQKASVTD--VVTQEELES------ITKLVVAGEK 55

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           +  S+  +   ++L+ LNL  N +       +  L KL  L +  N +  + +     NL
Sbjct: 56  VA-SIQGIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDISA---LQNL 109

Query: 414 SRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTH 473
           + L  L L +++++             +   L +                       +  
Sbjct: 110 TNLRELYLNEDNIS-------------DISPLANLT--------------------KMYS 136

Query: 474 QRMLLNLSSNQMRGKVPDL----SLRFDISGPGIDISSNHFEGPIPPLP--SNATSLNLS 527
               LNL +N     +  L     L +      + ++ +  +  + P+   ++  SL+L+
Sbjct: 137 ----LNLGANHNLSDLSPLSNMTGLNY------LTVTESKVKD-VTPIANLTDLYSLSLN 185

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM 587
            N+    IS L SL++ L Y     N ++   P        L  L + NN       + +
Sbjct: 186 YNQIE-DISPLASLTS-LHYFTAYVNQITDITPVANMT--RLNSLKIGNNKI--TDLSPL 239

Query: 588 GFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRN 645
             L  +  L +     S       L  +K+L++ SN++       + +L  L +L L+ N
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 646 NLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
            L  +    IG L +L  L LS+N         L+ LS +   D +   + 
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 32/195 (16%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
            +L       +  I     L+   I   L    ++  +     + +S+  L +A      
Sbjct: 3   ATLATLPAPIN-QIFPDADLAE-GIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV-- 56

Query: 582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALN 641
                + +L N+                    + L+L+ N++       + +LV L  L 
Sbjct: 57  ASIQGIEYLTNL--------------------EYLNLNGNQITD--ISPLSNLVKLTNLY 94

Query: 642 LSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701
           +  N +T      +  L +L  L L+ +       S L+ L+ +  ++L  N+    +  
Sbjct: 95  IGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP 150

Query: 702 GTQLQSFNELVYAGN 716
            + +   N L    +
Sbjct: 151 LSNMTGLNYLTVTES 165

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  124 bits (313), Expect = 2e-31
 Identities = 61/317 (19%), Positives = 101/317 (31%), Gaps = 54/317 (17%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
                   ++ ++    ++     S   +  L LS    +      L   ++L+ L+LS 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           N L        L  LS+L  L L+ N +         L    S+ TL   + ++  +  S
Sbjct: 68  NVL---YETLDLESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCS 117

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290
                      + I L  N +T                   L             G    
Sbjct: 118 RG------QGKKNIYLANNKIT------------------MLR--------DLDEGCRSR 145

Query: 291 LRYLDLSSNELRGIPK--FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
           ++YLDL  NE+  +       +   L+ L L            I D+        L+ L 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--------IYDVKGQVVFAKLKTLD 197

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEA 408
           LSSN++    P     + +  ++L NN L   I K++     LE   L GN         
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 409 LFSNLSRLAALDLADNS 425
            FS   R+  +      
Sbjct: 257 FFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 61/362 (16%), Positives = 115/362 (31%), Gaps = 60/362 (16%)

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
           I     N N     ++  +T+++L       L   + ++   + L  N L          
Sbjct: 2   IHEIKQNGNR---YKIEKVTDSSLK-QALASLRQSAWNVK-ELDLSGNPLSQISAADLAP 56

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
              L  L+LSSN L        ++  L+ L L+           +Q+L  G    S+E L
Sbjct: 57  FTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY--------VQELLVG---PSIETL 104

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
           H ++N I+    +       K + L NN +        G   +++ L L  N +  V   
Sbjct: 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
            L ++   L  L+L  N +  +     +   +L T+ L   K+             +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKL-----------AFMGPE 209

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLS 527
           F         ++L +N++                         E  +     N    +L 
Sbjct: 210 FQSAAGVT-WISLRNNKLV----------------------LIEKALRFSQ-NLEHFDLR 245

Query: 528 KNKFS-GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS 586
            N F  G++    S + R+  +         KL     +  ++  L          +P  
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 587 MG 588
             
Sbjct: 303 FA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 50/316 (15%), Positives = 95/316 (30%), Gaps = 52/316 (16%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
            L     L  L+LS N        +                           +LS L+ L
Sbjct: 53  DLAPFTKLELLNLSSNVL--YETLDL-------------------------ESLSTLRTL 85

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226
           DL+ N +        L    S+  L+   N++S  S      S+      + L +  +  
Sbjct: 86  DLNNNYVQE------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITM 134

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG 286
           +           + ++ +DL  N +    +  L   S +L   ++L  N +     +   
Sbjct: 135 LRDLDEGCR---SRVQYLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFIYDVKGQVV- 189

Query: 287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346
               L+ LDLSSN+L  +     +  G+  + L   +L   + + ++         +LE 
Sbjct: 190 -FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ------NLEH 241

Query: 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
             L  N           FS  +++          +     +   +  L   G      + 
Sbjct: 242 FDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 407 EALFSNLSRLAALDLA 422
                 L  L      
Sbjct: 301 APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 62/355 (17%), Positives = 111/355 (31%), Gaps = 83/355 (23%)

Query: 381 IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQL 440
           IH+      + ++ K+  +SL   ++  L  +   +  LDL+ N               L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGN--------------PL 46

Query: 441 NTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISG 500
           + IS                           T   +L NLSSN +               
Sbjct: 47  SQIS--------------------AADLAPFTKLELL-NLSSNVLYE------------- 72

Query: 501 PGIDISSNHFEGPIPPLP--SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGK 558
                           L   S   +L+L+ N     +  L    + +  L  +NN +S +
Sbjct: 73  -------------TLDLESLSTLRTLDLNNNY----VQELLVGPS-IETLHAANNNIS-R 113

Query: 559 LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNR----SQYEYKSTLGLV 613
           +     Q      + LANN          G    ++ L L  N     +  E  ++   +
Sbjct: 114 VSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG 673
           + L+L  N +   V  +++    L  L+LS N L   + P+      + ++ L  N+   
Sbjct: 172 EHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LV 227

Query: 674 GIPSSLSQLSGLSVMDLSYNNLSGKIP--LGTQLQSFNELVYAGNPELCGLPLRN 726
            I  +L     L   DL  N           ++ Q    +      +L G     
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 40/271 (14%), Positives = 78/271 (28%), Gaps = 50/271 (18%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             L  L  L  LDL+ N          L     +  L  ++   +  +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR-VS--CSRGQGKKN 124

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           + L+ N +    +LD     S + YL L LN++   +   +L +   +L  L+L    + 
Sbjct: 125 IYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIY 182

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            +    +        L+ +DL+ N L                             +   F
Sbjct: 183 DVKGQVVF-----AKLKTLDLSSNKLA---------------------------FMGPEF 210

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
                + ++ L +N+L  I K L     L+   L G                     +  
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-------SKNQR 263

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNL 376
              ++   +        E  ++  L      
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 534 SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593
           +I  +    NR     ++++ L   L        ++  L+L+ N         +     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 594 RSLSLYNRSQYEYKSTLGLVK--ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQI 651
             L+L +   YE      L     LDL++N +     +E++    +  L+ + NN++ ++
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 652 TPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNEL 711
           +   GQ      + L+ N+            S +  +DL  N +   +       S + L
Sbjct: 115 SCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 712 VY 713
            +
Sbjct: 172 EH 173

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (315), Expect = 1e-30
 Identities = 72/471 (15%), Positives = 134/471 (28%), Gaps = 87/471 (18%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
                   ++ ++    ++     S   +  L LS    +      L   ++L+ L+LS 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           N L        L  LS+L  L L+ N +         L    S+ TL   + ++  +  S
Sbjct: 68  NVL---YETLDLESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCS 117

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290
                 +                                I L +N++        G    
Sbjct: 118 RGQGKKN--------------------------------IYLANNKITMLRDLDEGCRSR 145

Query: 291 LRYLDLSSNELRGIPK--FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
           ++YLDL  NE+  +       +   L+ L L            I D+        L+ L 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--------IYDVKGQVVFAKLKTLD 197

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEA 408
           LSSN++    P     + +  ++L NN L   I K++     LE   L GN         
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 409 LFSNLSRLAALDLADNS-LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
            FS   R+  +       LT +   +   P   +  +     +   F   L       + 
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH- 315

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLS 527
                    LL+   ++      +                           +    ++  
Sbjct: 316 --------ALLSGQGSETERLECERE-----------------------NQARQREIDAL 344

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
           K ++   I  +       I L+     L  ++ +       L         
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 6e-27
 Identities = 70/467 (14%), Positives = 135/467 (28%), Gaps = 52/467 (11%)

Query: 239 NSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSS 298
           N  ++  +T+++L       L   + ++   + L  N L             L  L+LSS
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 299 NELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM 358
           N L        ++  L+ L L+           +Q+L  G    S+E LH ++N I+   
Sbjct: 68  NVLYETLDL-ESLSTLRTLDLNNNY--------VQELLVG---PSIETLHAANNNISRVS 115

Query: 359 PNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA 418
            +       K + L NN +        G   +++ L L  N +  V    L ++   L  
Sbjct: 116 CSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 419 LDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLL 478
           L+L  N +  +     +   +L T+ L   K+             +   F         +
Sbjct: 174 LNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKL-----------AFMGPEFQSAAGVTW-I 219

Query: 479 NLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP--LPSNATSLNLSKNKFSGSIS 536
           +L +N++   +   +LRF  +    D+  N F           N     ++K        
Sbjct: 220 SLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL 596
                                         D L+ L    +     +         +   
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAP---FADRLIALKRKEHAL---LSGQGSETERLECE 331

Query: 597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIG 656
                 Q E          +D    +    + +  +     + L   +  L  Q++    
Sbjct: 332 RENQARQRE----------IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 657 QLKSLDFLDLSRNQ--FFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701
               LD                   S L  L  +   Y  +  +   
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (283), Expect = 1e-26
 Identities = 68/448 (15%), Positives = 124/448 (27%), Gaps = 60/448 (13%)

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           I     N +R +   ++ ++L             ++  L L  N LS  S     L+   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFT 58

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
            L  L+L S  L        L+L S ++L  +DL  N +          V  S+   +  
Sbjct: 59  KLELLNLSSNVL-----YETLDLESLSTLRTLDLNNNYVQE------LLVGPSIE-TLHA 106

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKG-QLSE 330
            +N +              + + L++N++  +     G    ++ L L   E+     +E
Sbjct: 107 ANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 331 FIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
                       +LE L+L  N I   +     F+ LK L+L +N L   +         
Sbjct: 164 LAASSD------TLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
           +  + L  N L  +  E        L   DL  N        D+                
Sbjct: 216 VTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDF---------------- 257

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
              F K  + Q         LT Q                             +     F
Sbjct: 258 ---FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG-----------HYGAYCCEDLPAPF 303

Query: 511 EGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLV 570
              +  L     +L   +   +  +        R   +D         +     +  + +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 571 ILNLANNNFFGKIPNSMGFLHNIRSLSL 598
            L         ++ N       +     
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 3e-25
 Identities = 57/425 (13%), Positives = 122/425 (28%), Gaps = 84/425 (19%)

Query: 280 SIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
           +I E        +   ++ + L+        +   +K L LSG  L    +  +   +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 339 CTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNG 398
                LE L+LSSN +     +L   S+L+ L+L NN +     + +     +E L    
Sbjct: 59  ----KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 399 NSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWL 458
           N++   +S +          + LA+N +T+      +                       
Sbjct: 109 NNI-SRVSCSRGQGKKN---IYLANNKITM------LR---------------------- 136

Query: 459 QTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP 518
                        +  +  L+L  N++                   ++          L 
Sbjct: 137 ------DLDEGCRSRVQY-LDLKLNEID-----------------TVNFAELAASSDTL- 171

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
                LNL  N     +      +  L  LDLS+N L+  +   +     +  ++L NN 
Sbjct: 172 ---EHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 579 FFGKIPNSMGFLHNIRSLSLYN---RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV 635
               I  ++ F  N+    L                  ++  ++   +     +   +  
Sbjct: 226 -LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLS----RNQFFGGIPSSLSQLSGLSVMDLS 691
                +           P   +L +L   + +    +      +       +    +D  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 692 YNNLS 696
                
Sbjct: 345 KEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.8 bits (246), Expect = 8e-22
 Identities = 55/344 (15%), Positives = 107/344 (31%), Gaps = 30/344 (8%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
            L     L  L+LS N        +   SL  L  L L++         +L     ++ L
Sbjct: 53  DLAPFTKLELLNLSSNVL--YETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETL 104

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226
             + NN+     +   S       +YL  N ++   +          +  L L   ++  
Sbjct: 105 HAANNNI---SRVS-CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDT 158

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG 286
           +  + L     S++LE ++L  N +   V   +    + L   + L SN+L   +   F 
Sbjct: 159 VNFAELAAS--SDTLEHLNLQYNFIY-DVKGQVVF--AKLK-TLDLSSNKLA-FMGPEFQ 211

Query: 287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346
               + ++ L +N+L  I K L     L+   L G              +       ++ 
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-----QRVQT 266

Query: 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
           +   + +   +  N  E +     +               +L  L+  +    S  G  +
Sbjct: 267 VAKQTVKKL-TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 407 EAL---FSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGH 447
           E L     N +R   +D              +      T+    
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 8e-21
 Identities = 50/327 (15%), Positives = 104/327 (31%), Gaps = 32/327 (9%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             L  L  L  LDL+ N          L     +  L  ++   +  +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR-VS--CSRGQGKKN 124

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           + L+ N +    +LD     S + YL L LN++    N+ +L +   +L  L+L    + 
Sbjct: 125 IYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY 182

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            +    +        L+ +DL+ N L   + P   + +   V  ISL +N+L   I +A 
Sbjct: 183 DVKGQVVF-----AKLKTLDLSSNKLA-FMGPEFQSAAG--VTWISLRNNKLV-LIEKAL 233

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
               +L + DL  N               ++  ++ + +K    +  ++ +         
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT------VPT 287

Query: 346 WLHLSSNEITG-SMPNLGEFSSLKQLNLENNLLNG----TIHKSIGQLFKLEMLKLNGNS 400
             H  +        P      +LK+         G     +        +   +      
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 401 LGGVISEALFSNLSRLAALDLADNSLT 427
               + + +         L+    +L 
Sbjct: 348 Y-RTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 9e-13
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 534 SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593
           +I  +    NR     ++++ L   L        ++  L+L+ N         +     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 594 RSLSLYNRSQYEYKSTLGLVK--ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQI 651
             L+L +   YE      L     LDL++N +     +E++    +  L+ + NN++ ++
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 652 TPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNEL 711
           +   GQ      + L+ N+            S +  +DL  N +   +       S + L
Sbjct: 115 SCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 712 VY 713
            +
Sbjct: 172 EH 173

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 2e-29
 Identities = 68/361 (18%), Positives = 134/361 (37%), Gaps = 55/361 (15%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
               LDL +N     ++                          +  +   L+ L+L+ N 
Sbjct: 33  ETRLLDLGKNRIK--TLN-----------------------QDEFASFPHLEELELNENI 67

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           + + E     ++L +L  L L  N L        + + L +LT L +    +  ++    
Sbjct: 68  VSAVEP-GAFNNLFNLRTLGLRSNRLKLIPL--GVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
            +L    +L+ +++ +N+L   +    F+  +SL  +++L    L     EA   +  L 
Sbjct: 125 QDL---YNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEKCNLTSIPTEALSHLHGLI 179

Query: 293 YLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
            L L    +  I       +  LK+L +S       ++             +L  L ++ 
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSITH 233

Query: 352 NEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSI-GQLFKLEMLKLNGNSLGGVISEA 408
             +T ++P   +     L+ LNL  N ++ TI  S+  +L +L+ ++L G  L  V+   
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPY 290

Query: 409 LFSNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTISLGH------CKMGPRFPKWLQTQ 461
            F  L+ L  L+++ N LT             L T+ L        C++     +     
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRRWRL 348

Query: 462 N 462
           N
Sbjct: 349 N 349

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 1e-28
 Identities = 69/324 (21%), Positives = 119/324 (36%), Gaps = 46/324 (14%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
                 HL  L+L+ N    S++      +L  L  LGL S             LS L  
Sbjct: 51  EFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LD+S N +    +      L +L  L +  NDL   S+  +  S L+SL  L+L  C+L 
Sbjct: 109 LDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLT 165

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            I   +L +L   + L V+ L   N+  ++  + F     L   + +       ++    
Sbjct: 166 SIPTEALSHL---HGLIVLRLRHLNIN-AIRDYSFKRLYRL-KVLEISHWPYLDTMTPNC 220

Query: 286 GRMVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN-- 342
              ++L  L ++   L  +P   + ++  L+ L LS           I  +         
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP--------ISTIEGSMLHELL 272

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
            L+ + L   ++                 +E     G        L  L +L ++GN L 
Sbjct: 273 RLQEIQLVGGQLA---------------VVEPYAFRG--------LNYLRVLNVSGNQL- 308

Query: 403 GVISEALFSNLSRLAALDLADNSL 426
             + E++F ++  L  L L  N L
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 65/339 (19%), Positives = 117/339 (34%), Gaps = 52/339 (15%)

Query: 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQ 327
            + L  N+++    + F     L  L+L+ N +  + P    N+  L+ L L    LK  
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95

Query: 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNL-GEFSSLKQLNLENNLLNGTIHKSIG 386
                  LS      +L  L +S N+I   +  +  +  +LK L + +N L    H++  
Sbjct: 96  PLGVFTGLS------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 387 QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLG 446
            L  LE L L   +L   I     S+L  L  L L   ++     + +   ++L  + + 
Sbjct: 150 GLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDIS 506
           H                 PN  + L      L+++   +                   + 
Sbjct: 209 HWP---------YLDTMTPNCLYGLNLTS--LSITHCNLT-----------------AVP 240

Query: 507 SNHFEGPIPPLPSNATSLNLSKNKFS----GSISFLCSLSNRLIYLDLSNNLLSGKLPDC 562
                     L      LNLS N  S      +  L     RL  + L    L+  +   
Sbjct: 241 YLAVRH----LV-YLRFLNLSYNPISTIEGSMLHEL----LRLQEIQLVGGQLA-VVEPY 290

Query: 563 WFQ-FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
            F+  + L +LN++ N       +    + N+ +L L +
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 71/363 (19%)

Query: 343 SLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
               L L  N I     +    F  L++L L  N+++     +   LF L  L L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 402 GGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ 461
             +I   +F+ LS L  LD+++N              ++  +                  
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISEN--------------KIVILL----------------- 120

Query: 462 NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNA 521
                 F DL + + L  +  N +                   IS   F G    L  + 
Sbjct: 121 ---DYMFQDLYNLKSL-EVGDNDLV-----------------YISHRAFSG----LN-SL 154

Query: 522 TSLNLSKNKFSGSISF--LCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSLVILNLANNN 578
             L L K   + SI    L  L   LI L L +  ++  + D  F+    L +L +++  
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHG-LIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWP 211

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRS----QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDL 634
           +   +  +  +  N+ SLS+ + +     Y     L  ++ L+LS N +       + +L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 635 VGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693
           + L  + L    L   + P     L  L  L++S NQ      S    +  L  + L  N
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 694 NLS 696
            L+
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 51/198 (25%), Positives = 75/198 (37%), Gaps = 13/198 (6%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           A   L  L  L L + N +  SIP   L  L  L  L L          +    L RL+ 
Sbjct: 147 AFSGLNSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           L++S          + L  L+ L  L +   +L+        +  L  L  L+L    + 
Sbjct: 205 LEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPY--LAVRHLVYLRFLNLSYNPIS 261

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-A 284
            I  S L  L     L+ I L    L   V P+ F   + L   +++  NQL  ++ E  
Sbjct: 262 TIEGSMLHELLR---LQEIQLVGGQLA-VVEPYAFRGLNYLR-VLNVSGNQLT-TLEESV 315

Query: 285 FGRMVSLRYLDLSSNELR 302
           F  + +L  L L SN L 
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 10/125 (8%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSR 162
           +TP  L   +LT L ++  N   +++P   +  L  L +L LS    +      L  L R
Sbjct: 216 MTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS- 221
           LQ + L    L   E       L+ L  L +  N L+       +   + +L TL L S 
Sbjct: 274 LQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLEE--SVFHSVGNLETLILDSN 330

Query: 222 ---CD 223
              CD
Sbjct: 331 PLACD 335

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 3e-29
 Identities = 96/523 (18%), Positives = 166/523 (31%), Gaps = 96/523 (18%)

Query: 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVI 244
            + L       ++L+           + S T       +     P             + 
Sbjct: 10  NTFLQEPLRHSSNLTEMPV---EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 245 DLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI 304
           D  +                     + L +  L  S+PE       L  L  S N L  +
Sbjct: 67  DCLDRQAH----------------ELELNNLGLS-SLPELPP---HLESLVASCNSLTEL 106

Query: 305 PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF 364
           P+   ++  L +   + K L                   LE+L +S+N++   +P L   
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPP-------------LLEYLGVSNNQLE-KLPELQNS 152

Query: 365 SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
           S LK ++++NN L     K       LE +    N L  +       NL  L A+   +N
Sbjct: 153 SFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNN 205

Query: 425 SLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ 484
           SL          P  L +I  G+  +                   +L     +    +N 
Sbjct: 206 SLKKLPDL----PLSLESIVAGNNIL------------EELPELQNLPFLTTI-YADNNL 248

Query: 485 MRGKVPDL--SLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLS 542
           ++  +PDL  SL        +++  N+    +P LP + T L++S+N      S L  L 
Sbjct: 249 LK-TLPDLPPSLEA------LNVRDNYLTD-LPELPQSLTFLDVSEN----IFSGLSELP 296

Query: 543 NRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRS 602
             L YL+ S+N +   L D      SL  LN++NN    ++P        +  L      
Sbjct: 297 PNLYYLNASSNEIR-SLCDLP---PSLEELNVSNNKL-IELPALPP---RLERLIASFNH 348

Query: 603 QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD 662
             E       +K L +  N L    P     +      +L  N+   ++      LK L 
Sbjct: 349 LAEVPELPQNLKQLHVEYNPLRE-FPDIPESVE-----DLRMNSHLAEVPELPQNLKQLH 402

Query: 663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQL 705
              +  N      P     +  L    ++   +        + 
Sbjct: 403 ---VETNP-LREFPDIPESVEDL---RMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (302), Expect = 6e-29
 Identities = 85/511 (16%), Positives = 169/511 (33%), Gaps = 98/511 (19%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           I P  +    L       +N +   +P    ++   +    + +E+    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 164 QFLDLSFNNLFSGENLDWLSH---------LSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214
               L          L+ L++            L  L    N L+      +L   L SL
Sbjct: 61  AVSRLRDCLDRQAHELE-LNNLGLSSLPELPPHLESLVASCNSLTELP---ELPQSLKSL 116

Query: 215 TTLSLYSCDLPPIIPSSLLNLNSSN-------------SLEVIDLTENNLTNSVYPWLFN 261
              +     L   +P  L  L  SN              L++ID+  N+L       L +
Sbjct: 117 LVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-----LPD 170

Query: 262 VSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSG 321
           +  SL   I+  +NQL+  +PE    +  L  +   +N L+ +P    +   L+ +    
Sbjct: 171 LPPSLE-FIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLPLS---LESIVAGN 224

Query: 322 KELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTI 381
             L+ +L E             L  ++  +N +  ++P+     SL+ LN+ +N L   +
Sbjct: 225 NILE-ELPEL-----QNLP--FLTTIYADNNLLK-TLPD--LPPSLEALNVRDNYLT-DL 272

Query: 382 HKSIGQLFKLEMLKLNGNSLGGVIS------------EALFSNLSRLAALDLADNSLTLE 429
            +    L  L++ +   + L  +               +L      L  L++++N L   
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE- 331

Query: 430 FSHDWIPPF--QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRG 487
                +P    +L  +      +             VP    +L      L++  N +R 
Sbjct: 332 -----LPALPPRLERLIASFNHL-----------AEVPELPQNLKQ----LHVEYNPLR- 370

Query: 488 KVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIY 547
           + PD+           D+  N     +P LP N   L++  N     +     +   +  
Sbjct: 371 EFPDIPESV------EDLRMNSHLAEVPELPQNLKQLHVETNP----LREFPDIPESVED 420

Query: 548 LDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
           L +++  +           D L      +++
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (291), Expect = 1e-27
 Identities = 84/450 (18%), Positives = 148/450 (32%), Gaps = 90/450 (20%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
             HL  L  S N+ +   +PE   SL  L     +    +   P        L++L +S 
Sbjct: 90  PPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSN 140

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           N L   E L  L + S L  + +D N L    +         SL  ++  +  L      
Sbjct: 141 NQL---EKLPELQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQL-----E 186

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290
            L  L +   L  I    N+L       L ++  SL   I   +N L          +  
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKK-----LPDLPLSLE-SIVAGNNIL--EELPELQNLPF 238

Query: 291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
           L  +   +N L+ +P    +   L+ L +    L   L E  Q L+       L+     
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLT-DLPELPQSLT------FLDVSENI 288

Query: 351 SNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF 410
            + ++   PN      L  LN  +N +             LE L ++ N L       L 
Sbjct: 289 FSGLSELPPN------LYYLNASSNEIR----SLCDLPPSLEELNVSNNKL-----IELP 333

Query: 411 SNLSRLAALDLADNSLTLEFSHDWIPPF--QLNTISLGHCKMGPRFPKWLQTQNTVPNWF 468
           +   RL  L  + N L        +P     L  + + +  +              P+  
Sbjct: 334 ALPPRLERLIASFNHLAE------VPELPQNLKQLHVEYNPL-----------REFPDIP 376

Query: 469 WDLTHQRMLLNLSSNQMRGKVPDL--SLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL 526
             +   RM  +L+       VP+L  +L+       + + +N      P +P +   L +
Sbjct: 377 ESVEDLRMNSHLAE------VPELPQNLKQ------LHVETNPLRE-FPDIPESVEDLRM 423

Query: 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLS 556
           +  +      F    +++L      ++   
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (270), Expect = 6e-25
 Identities = 79/431 (18%), Positives = 138/431 (32%), Gaps = 78/431 (18%)

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS---- 336
           I         L+     S+ L  +P    N+      Y +  E +        +      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 337 ---SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEM 393
                C       L L++  ++ S+P       L+ L    N L   + +    L  L +
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPE--LPPHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 394 LKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCK 449
              N  +L  +           L  L +++N L        +P       L  I + +  
Sbjct: 119 DNNNLKALSDLPPL--------LEYLGVSNNQLEK------LPELQNSSFLKIIDVDNNS 164

Query: 450 MGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDL----SLRFDISGPGIDI 505
           +             +P+    L      +   +NQ+  ++P+L     L        I  
Sbjct: 165 L-----------KKLPDLPPSLEF----IAAGNNQLE-ELPELQNLPFLTA------IYA 202

Query: 506 SSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ 565
            +N  +  +P LP +  S+    N     +  L +L   L  +   NNLL   LPD    
Sbjct: 203 DNNSLKK-LPDLPLSLESIVAGNNILE-ELPELQNLPF-LTTIYADNNLLK-TLPD---L 255

Query: 566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG 625
             SL  LN+ +N     +P       ++  L +              +  L+ SSN++  
Sbjct: 256 PPSLEALNVRDNY-LTDLPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEI-R 310

Query: 626 GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
            +         L  LN+S N L  ++     +L+    L  S N     +P     L  L
Sbjct: 311 SLCDL---PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNH-LAEVPELPQNLKQL 362

Query: 686 SVMDLSYNNLS 696
               + YN L 
Sbjct: 363 ---HVEYNPLR 370

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 7e-27
 Identities = 91/538 (16%), Positives = 169/538 (31%), Gaps = 53/538 (9%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
              + L +   +    +      +P   L S  ++  L L+  +      +       +Q
Sbjct: 45  FEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L + FN +          ++  L  L L+ NDLS+      +      LTTLS+ + +L
Sbjct: 103 KLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNL 159

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTN---SVYPWLFNV-----------SSSLVDRI 270
             I   +        SL+ + L+ N LT+   S+ P LF+                V+ +
Sbjct: 160 ERIEDDTFQAT---TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216

Query: 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSE 330
               N +           V L  L L  N L        N  GL  + LS      +L +
Sbjct: 217 DASHNSINVVRGPVN---VELTILKLQHNNLTDTAWL-LNYPGLVEVDLSY----NELEK 268

Query: 331 FIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390
            +           LE L++S+N +           +LK L+L +N L   + ++  Q  +
Sbjct: 269 IMYHPFVKMQ--RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLG--HC 448
           LE L L+ NS+   +  +    L     L L+ N                  +     HC
Sbjct: 326 LENLYLDHNSI-VTLKLSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 449 KMGPRFPKWLQTQNTVPNW--FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDIS 506
           K+  +    L  + +   +            +     + +G+         +      I+
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441

Query: 507 SNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSN-RLIYLDLSNNLLSGKLPDCWFQ 565
                         A    L       +   +      + ++ ++  NL   +LP     
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLP----- 496

Query: 566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKL 623
            D L   +   N  F  +     F      L      + E  +     + L+  +  L
Sbjct: 497 KDGLARSSDNLNKVFTHLKERQAF-----KLRETQARRTEADAKQKETEDLEQENIAL 549

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 4e-24
 Identities = 60/335 (17%), Positives = 116/335 (34%), Gaps = 26/335 (7%)

Query: 127 SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS 186
             I   L        + +           +   L+  + +    + +        L    
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFR 75

Query: 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL 246
            +  L L+   +     +    +  H++  L +    +  + P    N+     L V+ L
Sbjct: 76  QVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVL 130

Query: 247 TENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK 306
             N+L+ S+   +F+ +  L   +S+ +N L+    + F    SL+ L LSSN L  +  
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLT-TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD- 187

Query: 307 FLGNMCGLKILYLSGKELK-----GQLSEF------IQDLSSGCTKNSLEWLHLSSNEIT 355
            L  +  L    +S   L        + E       I  +        L  L L  N +T
Sbjct: 188 -LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLT 245

Query: 356 GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSR 415
                L  +  L +++L  N L   ++    ++ +LE L ++ N L  +        +  
Sbjct: 246 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPT 302

Query: 416 LAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
           L  LDL+ N L      +     +L  + L H  +
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 9e-27
 Identities = 46/314 (14%), Positives = 98/314 (31%), Gaps = 52/314 (16%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSL--GKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
                +      +       +  + L          L L S       P Q   LS LQ 
Sbjct: 52  QANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQH 108

Query: 166 LDLSFNNLFSGENL-DWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
           + +    L     L D +   + L  L L  N L         ++ L+ L  LS+ +C  
Sbjct: 109 MTIDAAGL---MELPDTMQQFAGLETLTLARNPLRALPAS---IASLNRLRELSIRACPE 162

Query: 225 PPIIPSSLLNLNSSN------SLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
              +P  L + ++S       +L+ + L    +                           
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------------------------- 196

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
            S+P +   + +L+ L + ++ L  +   + ++  L+ L L G              +  
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-- 253

Query: 339 CTKNSLEWLHLSS-NEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397
                L+ L L   + +     ++   + L++L+L   +    +   I QL    ++ + 
Sbjct: 254 ----PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 398 GNSLGGVISEALFS 411
            +    +      +
Sbjct: 310 PHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 6e-26
 Identities = 54/328 (16%), Positives = 100/328 (30%), Gaps = 35/328 (10%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
                 L    +  +     + L    +      +          +  N +  Q    + 
Sbjct: 11  SSGRENLYFQGST-ALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
             L +  +L   +     + L L    L  F +      +L  L  +++ +  L   +P 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQ---AFRLSHLQHMTIDAAGL-MELPD 121

Query: 231 SLLNLNSSNSLEVIDLTEN----------NLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
           ++        LE + L  N          +L       +            LP       
Sbjct: 122 TMQQF---AGLETLTLARNPLRALPASIASLNRLRELSIRACPEL----TELPEPLASTD 174

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT 340
                  +V+L+ L L    +R +P  + N+  LK L +    L   L   I  L     
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP---- 229

Query: 341 KNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399
              LE L L       + P   G  + LK+L L++     T+   I +L +LE L L G 
Sbjct: 230 --KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 400 SLGGVISEALFSNLSRLAALDLADNSLT 427
                +   + + L     + +  +   
Sbjct: 288 VNLSRLPSLI-AQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 51/372 (13%), Positives = 98/372 (26%), Gaps = 80/372 (21%)

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           +  S  +    S  + L  + +      H  + Q  +      N             +N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANS 55

Query: 414 SRLAALDLADNSLT-LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLT 472
           +          +L       +         + L    +              P+  + L+
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-----------PQFPDQAFRLS 104

Query: 473 HQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
           H +  + + +  +                               LP              
Sbjct: 105 HLQH-MTIDAAGLME-----------------------------LPDT------------ 122

Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
                +   +  L  L L+ N L   LP      + L  L++       ++P  +     
Sbjct: 123 -----MQQFAG-LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 593 IRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT 652
                            L  ++ L L    +   +P  I +L  L +L +  + L+  + 
Sbjct: 176 SGEH-----------QGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNEL 711
           P I  L  L+ LDL         P      + L  + L   +    +PL   +L    +L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 712 VYAGNPELCGLP 723
              G   L  LP
Sbjct: 283 DLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.9 bits (203), Expect = 6e-17
 Identities = 51/364 (14%), Positives = 98/364 (26%), Gaps = 72/364 (19%)

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
             E L+   +       +    S  ++    +     +           ++    G +L 
Sbjct: 13  GRENLYFQGSTALRPYHD--VLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALK 69

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF-----QLNTISLGHCKMGPRFPKW 457
                   +      AL+L    L         P        L  +++    +       
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ------FPDQAFRLSHLQHMTIDAAGL------- 116

Query: 458 LQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD-----LSLRFDISGPGIDISSNHFEG 512
                 +P+          L  L+ N +R  +P        LR       + I +     
Sbjct: 117 ----MELPDTMQQFAGLETL-TLARNPLR-ALPASIASLNRLRE------LSIRACPELT 164

Query: 513 PIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572
            +P          L+    SG    L +L      L L    +   LP       +L  L
Sbjct: 165 ELPE--------PLASTDASGEHQGLVNLQ----SLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 573 NLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIM 632
            + N+     +  ++  L  +                    + LDL         P    
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKL--------------------EELDLRGCTALRNYPPIFG 250

Query: 633 DLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692
               L  L L   +    +   I +L  L+ LDL        +PS ++QL    ++ +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 693 NNLS 696
           +  +
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 103 KITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSR 162
             +     L +L  L L        S+P  + +L  L  L + ++  +  +   + +L +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 163 LQFLDLSFNNLFSGENL-DWLSHLSSLIYLYLDLNDLSNFSNWVQL---LSKLHSLTTLS 218
           L+ LDL         N        + L  L      L + SN + L   + +L  L  L 
Sbjct: 231 LEELDLRGCTAL--RNYPPIFGGRAPLKRL-----ILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
           L  C     +PS +  L    +  +I +  +    
Sbjct: 284 LRGCVNLSRLPSLIAQL---PANCIILVPPHLQAQ 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  112 bits (282), Expect = 5e-26
 Identities = 74/367 (20%), Positives = 116/367 (31%), Gaps = 67/367 (18%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKL--SYLGLSSAEFAGPIPHQLGNLSRLQFLDL 168
             H+T L +  NN +  S+P     L  L  S   L+S      +P     L  L     
Sbjct: 60  PAHITTLVIPDNNLT--SLPALPPELRTLEVSGNQLTS------LPVLPPGLLELSIFSN 111

Query: 169 SFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPII 228
              +L     L      S L  L++  N L++      L   L  L+        LP + 
Sbjct: 112 PLTHL---PAL-----PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP 160

Query: 229 PSSLLNLN-SSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
            S L  L   +N L  + +  + L                  +S+  NQL  S+P     
Sbjct: 161 -SELCKLWAYNNQLTSLPMLPSGLQ----------------ELSVSDNQLA-SLPTLPS- 201

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
              L  L   +N L  +P        LK L +SG  L   L             + L+ L
Sbjct: 202 --ELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLT-SLPVLP---------SELKEL 246

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
            +S N +T S+P     S L  L++  N L   + +S+  L     + L GN L    SE
Sbjct: 247 MVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL----SE 298

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
                L  + +       +      D             H           + +    + 
Sbjct: 299 RTLQALREITSAPGYSGPII---RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 468 FWDLTHQ 474
           +     +
Sbjct: 356 WHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (268), Expect = 3e-24
 Identities = 65/373 (17%), Positives = 113/373 (30%), Gaps = 64/373 (17%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
                 L++  +    +++P+ L +   ++ L +        +P        L+ L++S 
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCLPA--HITTLVIPDNNLTS-LPALPPE---LRTLEVSG 90

Query: 171 NNLFSGENL-DWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229
           N L    +L      L  L      L  L        L S L  L         LP + P
Sbjct: 91  NQL---TSLPVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVLPP 141

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
                      L+ + +++N L  S+      +       +   +NQL  S+P       
Sbjct: 142 ----------GLQELSVSDNQLA-SLPALPSELCK-----LWAYNNQLT-SLPMLPS--- 181

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
            L+ L +S N+L  +P     +  L         L    S              L+ L +
Sbjct: 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS-------------GLKELIV 228

Query: 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL 409
           S N +T S+P     S LK+L +  N L  ++         L  L +  N L  +     
Sbjct: 229 SGNRLT-SLPV--LPSELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTRLPES-- 279

Query: 410 FSNLSRLAALDLADNSLT----LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP 465
             +LS    ++L  N L+             P     I            +         
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 466 NWFWDLTHQRMLL 478
           +W           
Sbjct: 340 DWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (252), Expect = 2e-22
 Identities = 69/426 (16%), Positives = 130/426 (30%), Gaps = 108/426 (25%)

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
               L++  + L  +P  L                                   +  L +
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--------------------------------HITTLVI 68

Query: 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL 409
             N +T S+P       L+ L +  N L  ++      L +L +       L      AL
Sbjct: 69  PDNNLT-SLPA--LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-----PAL 119

Query: 410 FSNLSRLAALDLADNSLTLEFSHDWIPPF--QLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
            S L +L    +  N LT       +P     L  +S+   ++            ++P  
Sbjct: 120 PSGLCKL---WIFGNQLTS------LPVLPPGLQELSVSDNQL-----------ASLPAL 159

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLS 527
             +L      L   +NQ+                            +P LPS    L++S
Sbjct: 160 PSELCK----LWAYNNQLTS--------------------------LPMLPSGLQELSVS 189

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM 587
            N+    ++ L +L + L  L   NN L+  LP        L  L + + N    +P   
Sbjct: 190 DNQ----LASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIV-SGNRLTSLPVLP 240

Query: 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL 647
                ++ L +              +  L +  N+L   +P+ ++ L     +NL  N L
Sbjct: 241 S---ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL 296

Query: 648 TGQITPKIGQLKSLDFLDLSRNQFFGGIPS--SLSQLSGLSVMDLSYNNLSGKIPLGTQL 705
           + +    + ++ S         +F     S    ++   L+  D       G+     + 
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 706 QSFNEL 711
             F + 
Sbjct: 357 HMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 3e-22
 Identities = 71/351 (20%), Positives = 125/351 (35%), Gaps = 88/351 (25%)

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290
             +    +N   V+++ E+ LT      L +   + +  + +P N L  S+P        
Sbjct: 32  QKMRACLNNGNAVLNVGESGLTT-----LPDCLPAHITTLVIPDNNLT-SLPALPP---E 82

Query: 291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
           LR L++S N+L  +P     +  L I       L    S              L  L + 
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS-------------GLCKLWIF 129

Query: 351 SNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF 410
            N++T S+P       L++L++ +N L  ++     +   L  L    N L      +L 
Sbjct: 130 GNQLT-SLPV--LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL-----TSLP 177

Query: 411 SNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD 470
              S L  L ++DN L                                    ++P    +
Sbjct: 178 MLPSGLQELSVSDNQLA-----------------------------------SLPTLPSE 202

Query: 471 LTHQRMLLNLSSNQMRGKVPDL--SLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSK 528
           L      L   +N++   +P L   L+       + +S N     +P LPS    L +S 
Sbjct: 203 LYK----LWAYNNRLT-SLPALPSGLKE------LIVSGNRLTS-LPVLPSELKELMVSG 250

Query: 529 NKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF 579
           N+    ++ L  L + L+ L +  N L+ +LP+      S   +NL  N  
Sbjct: 251 NR----LTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 3e-18
 Identities = 64/345 (18%), Positives = 113/345 (32%), Gaps = 64/345 (18%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
              L  L++S N  +  S+P     L +LS            +P     L +L    +  
Sbjct: 80  PPELRTLEVSGNQLT--SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKL---WIFG 130

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH--------------SLTT 216
           N L S   L        L  L +  N L++       L KL                L  
Sbjct: 131 NQLTSLPVL-----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQE 185

Query: 217 LSLYSCDLP--PIIPSSLLNLNSSN-----------SLEVIDLTENNLTNSVYPWLFNVS 263
           LS+    L   P +PS L  L + N            L+ + ++ N LT+     L  + 
Sbjct: 186 LSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-----LPVLP 240

Query: 264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKE 323
           S L   + +  N+L  S+P        L  L +  N+L  +P+ L ++     + L G  
Sbjct: 241 SELK-ELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

Query: 324 LKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHK 383
           L  +  + +++++S             S  I       G  +  +   L     +  +  
Sbjct: 296 LSERTLQALREITS---------APGYSGPII-RFDMAGASAPRETRALHLAAADWLVPA 345

Query: 384 SIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428
             G+    +   + G       ++A    L RL+  +        
Sbjct: 346 REGEPAPADRWHMFGQEDN---ADAFSLFLDRLSETENFIKDAGF 387

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 7e-26
 Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 25/312 (8%)

Query: 127 SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS 186
             I   L        + +           +   L+  + +    + +        L    
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFR 69

Query: 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL 246
            +  L L+   +          +  H++  L +    +  + P    N+     L V+ L
Sbjct: 70  QVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVL 124

Query: 247 TENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK 306
             N+L+ S+   +F+ +  L   +S+ +N L+    + F    SL+ L LSSN L  +  
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLT-TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD- 181

Query: 307 FLGNMCGLKILYLSGKELK-----GQLSEF------IQDLSSGCTKNSLEWLHLSSNEIT 355
            L  +  L    +S   L        + E       I  +        L  L L  N +T
Sbjct: 182 -LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLT 239

Query: 356 GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSR 415
                L  +  L +++L  N L   ++    ++ +LE L ++ N L  +        +  
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPT 296

Query: 416 LAALDLADNSLT 427
           L  LDL+ N L 
Sbjct: 297 LKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (269), Expect = 4e-25
 Identities = 73/405 (18%), Positives = 133/405 (32%), Gaps = 82/405 (20%)

Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQL 328
           + +               + + + +   ++ +R +P   L +   +++L L+      Q+
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND----LQI 81

Query: 329 SEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIG 386
            E      +     +++ L++  N I   +P         L  L LE N L+        
Sbjct: 82  EEIDTYAFAYAH--TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 387 QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLG 446
              KL  L ++ N+L   I +  F   + L  L L+ N LT               + L 
Sbjct: 139 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT--------------HVDLS 183

Query: 447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDIS 506
                                   L H     N+S N +      +++        +D S
Sbjct: 184 --------------------LIPSLFH----ANVSYNLLSTLAIPIAVEE------LDAS 213

Query: 507 SNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF 566
            N       P+    T L L  N  +   ++L +    L+ +DLS N L   +   + + 
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPG-LVEVDLSYNELEKIMYHPFVKM 271

Query: 567 DSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG 626
             L  L ++NN     +      +  ++                    +LDLS N L   
Sbjct: 272 QRLERLYISNNRL-VALNLYGQPIPTLK--------------------VLDLSHNHLLH- 309

Query: 627 VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           V +       L  L L  N++    T K+    +L  L LS N +
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 56/302 (18%), Positives = 104/302 (34%), Gaps = 51/302 (16%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           A      +  L +  N      +P     ++  L+ L L   + +        N  +L  
Sbjct: 88  AFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 166 LDLSFNNLFSGENLDW--LSHLSSLIYLYLDLNDLSNFS--------------NWVQLLS 209
           L +S NNL   E ++       +SL  L L  N L++                N +  L+
Sbjct: 146 LSMSNNNL---ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202

Query: 210 KLHSLTTLSLYSCDLPPIIPSSLLNLN----SSN------------SLEVIDLTENNLTN 253
              ++  L      +  +     + L       N             L  +DL+ N L  
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE- 261

Query: 254 SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCG 313
            +    F     L  R+ + +N+L  ++      + +L+ LDLS N L  + +       
Sbjct: 262 KIMYHPFVKMQRLE-RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319

Query: 314 LKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLE 373
           L+ LYL            I  L    T ++L+ L LS N+   +      F ++ +  ++
Sbjct: 320 LENLYLDHNS--------IVTLKLS-THHTLKNLTLSHNDWDCN-SLRALFRNVARPAVD 369

Query: 374 NN 375
           + 
Sbjct: 370 DA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 57/346 (16%), Positives = 120/346 (34%), Gaps = 62/346 (17%)

Query: 360 NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
           NL        ++++    +         L   +++    +++   +  AL  +  ++  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 420 DLADNSLTLEFSHDWIPPF------QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTH 473
           +L D  +        I  +       +  + +G   +          +   P+ F ++  
Sbjct: 75  NLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAI----------RYLPPHVFQNVPL 118

Query: 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG 533
             +L  L  N +                   +    F       P   T+L++S N    
Sbjct: 119 LTVL-VLERNDLS-----------------SLPRGIFHN----TP-KLTTLSMSNNNLER 155

Query: 534 -SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
                  + ++ L  L LS+N L+  +        SL   N++ N       +++     
Sbjct: 156 IEDDTFQATTS-LQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 593 IRSLSL-YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQI 651
           +  L   +N            + IL L  N L       +++  GLV ++LS N L  +I
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KI 263

Query: 652 TPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
                 +++ L+ L +S N+    +      +  L V+DLS+N+L 
Sbjct: 264 MYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           +      +  L  LDLS N+     +        +L  L L        +   L     L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN 196
           + L LS N+           +++       D +
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 4e-25
 Identities = 71/334 (21%), Positives = 116/334 (34%), Gaps = 35/334 (10%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
           +  +LQ L +L + +              L  L  L L   +F          L+ L+ L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 167 DLSFNNLFSGE-NLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
            L+  NL     + ++   L+SL  L L  N++            +     L L    + 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVK 167

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            I    LLN    +   ++ L+   L                    +    L        
Sbjct: 168 SICEEDLLNFQGKH-FTLLRLSSITLQ------------------DMNEYWLGWEKCGNP 208

Query: 286 GRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQLSEF----IQDLSS-- 337
            +  S+  LDLS N  +     +F   + G KI  L         S F     +D  +  
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 338 --GCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEM 393
             G   + ++   LS ++I  ++       F+ L+QL L  N +N     +   L  L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 394 LKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           L L+ N LG  I   +F NL +L  LDL+ N + 
Sbjct: 328 LNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 4e-23
 Identities = 77/416 (18%), Positives = 135/416 (32%), Gaps = 47/416 (11%)

Query: 289 VSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFI-QDLSSGCTKNSLEW 346
             + Y+DLS N +  +       +  L+ L +  +     +     + LS      SL  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS------SLII 83

Query: 347 LHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTI--HKSIGQLFKLEMLKLNGNSLG 402
           L L  N+    +        ++L+ L L    L+G +        L  LEML L  N++ 
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN 462
            +   + F N+ R   LDL  N +      D +     +   L    +  +         
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 463 TVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT 522
                 +  T     L+LS N  +  +               +  ++             
Sbjct: 203 EKCGNPFKNTSITT-LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFG 581
             +     F G        ++ +   DLS + +   L    F  F  L  L LA N    
Sbjct: 262 K-DPDNFTFKGLE------ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE--- 310

Query: 582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVAL 640
                   ++ I   + +          L  +  L+LS N L G +   + + L  L  L
Sbjct: 311 --------INKIDDNAFWG---------LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVL 352

Query: 641 NLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
           +LS N++   +  +    L +L  L L  NQ          +L+ L  + L  N  
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 69/320 (21%), Positives = 110/320 (34%), Gaps = 35/320 (10%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQ 164
           A   L +L  L L++ N  G+ +   F   L  L  L L         P     N+ R  
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 165 FLDLSFNNLFSGENLDWLS-HLSSLIYLYLDLNDLSNFSNWV------QLLSKLHSLTTL 217
            LDL+FN + S    D L+        L L    L + + +           K  S+TTL
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 218 SLYSCDLPPIIPSSLLNLNSSNSLE----------VIDLTENNLTNSVYPWLFNVSSSLV 267
            L        +     +  +   ++                 N  +        + +S V
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 268 DRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPK--FLGNMCGLKILYLSGKEL 324
               L  +++  ++ +  F     L  L L+ NE+  I    F G +  L  L LS    
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQ--- 332

Query: 325 KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF---SSLKQLNLENNLLNGTI 381
              L      +     K  LE L LS N I  ++ +   F    +LK+L L+ N L    
Sbjct: 333 -NFLGSIDSRMFENLDK--LEVLDLSYNHIR-ALGD-QSFLGLPNLKELALDTNQLKSVP 387

Query: 382 HKSIGQLFKLEMLKLNGNSL 401
                +L  L+ + L+ N  
Sbjct: 388 DGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 82/407 (20%), Positives = 129/407 (31%), Gaps = 87/407 (21%)

Query: 357 SMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416
            +P L   + +  ++L  N +      S  +L  L+ LK+   + G VI    F  LS L
Sbjct: 24  QVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 417 AALDLADNSLTLEFSHDWIPP------FQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD 470
             L L  N          +          L  ++L  C         L       N+F  
Sbjct: 82  IILKLDYNQFLQ------LETGAFNGLANLEVLTLTQCN--------LDGAVLSGNFFKP 127

Query: 471 LTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNK 530
           LT   M L L  N                     I           +      L+L+ NK
Sbjct: 128 LTSLEM-LVLRDNN--------------------IKKIQPASFFLNMR-RFHVLDLTFNK 165

Query: 531 FS----GSISFLCSLSNRLIYL------DLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580
                   +         L+ L      D++   L  +     F+  S+  L+L+ N F 
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 581 GKIPNSM-GFLHNIRSLSLYNRSQYEYKSTLGL------------------VKILDLSSN 621
             +       +   +  SL   + Y   S+ G                   VK  DLS +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

Query: 622 KLGGGVPKEIMD-LVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSL 679
           K+   + K +      L  L L++N +  +I       L  L  L+LS+N          
Sbjct: 286 KI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 680 SQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRN 726
             L  L V+DLSYN           +++  +  + G P L  L L  
Sbjct: 344 ENLDKLEVLDLSYN----------HIRALGDQSFLGLPNLKELALDT 380

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 3e-24
 Identities = 56/276 (20%), Positives = 95/276 (34%), Gaps = 24/276 (8%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSI-PEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
               L++L  L L  N  S   I P     L KL  L LS  +    +P ++     LQ 
Sbjct: 71  DFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQE 125

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC--- 222
           L +  N +         + L+ +I + L  N L +          +  L+ + +      
Sbjct: 126 LRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 223 DLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIP 282
            +P  +P SL  L          L  N +T  V        ++L  ++ L  N +     
Sbjct: 185 TIPQGLPPSLTEL---------HLDGNKIT-KVDAASLKGLNNL-AKLGLSFNSISAVDN 233

Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
            +      LR L L++N+L  +P  L +   ++++YL    +    S           K 
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 343 SLEWLHLSSNEITGSMPNLGEFS---SLKQLNLENN 375
           S   + L SN +         F        + L N 
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 9e-24
 Identities = 65/323 (20%), Positives = 112/323 (34%), Gaps = 36/323 (11%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
           HL  +  S        +P+ L      + L L + +          NL  L  L L  N 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           +         + L  L  LYL  N L      +       +L  L ++  ++  +  S  
Sbjct: 88  ISKISP-GAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQELRVHENEITKVRKSVF 141

Query: 233 LNLNSSNSLEVIDLTENNLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL 291
             LN    + V++L  N L +S +    F     L   I +    +  +IP+  G   SL
Sbjct: 142 NGLNQ---MIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT-TIPQ--GLPPSL 194

Query: 292 RYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--SLEWLH 348
             L L  N++  +    L  +  L  L LS           I  + +G   N   L  LH
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS--------ISAVDNGSLANTPHLRELH 246

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNG------TIHKSIGQLFKLEMLKLNGNSLG 402
           L++N++      L +   ++ + L NN ++              +      + L  N + 
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 403 GV-ISEALFSNLSRLAALDLADN 424
              I  + F  +   AA+ L + 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 5e-23
 Identities = 65/306 (21%), Positives = 119/306 (38%), Gaps = 48/306 (15%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
                LDL  N +   ++     +L +L  L L  N +S  S      + L  L  L L 
Sbjct: 52  PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYLS 108

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              L   +P  +       +L+ + + EN +T  V   +FN  + ++  + L +N L+ S
Sbjct: 109 KNQL-KELPEKMP-----KTLQELRVHENEIT-KVRKSVFNGLNQMI-VVELGTNPLKSS 160

Query: 281 I--PEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
                AF  M  L Y+ ++   +  IP+  G    L  L+L G +        I  + + 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNK--------ITKVDAA 210

Query: 339 CTKN--SLEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE 392
             K   +L  L LS N I+    GS+ N      L++L+L NN L   +   +     ++
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANT---PHLRELHLNNNKLV-KVPGGLADHKYIQ 266

Query: 393 MLKLNGNSL-----GGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP------FQLN 441
           ++ L+ N++              +  +  + + L  N +     +  I P      +   
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ----YWEIQPSTFRCVYVRA 322

Query: 442 TISLGH 447
            + LG+
Sbjct: 323 AVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 70/379 (18%), Positives = 123/379 (32%), Gaps = 104/379 (27%)

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--SLEWL 347
            LR +  S   L  +PK L       +L L            I ++  G  KN  +L  L
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNN--------KITEIKDGDFKNLKNLHTL 81

Query: 348 HLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSI-GQLFK-LEMLKLNGNSL 401
            L +N+I+    G+   L     L++L L  N L     K +  ++ K L+ L+++ N +
Sbjct: 82  ILINNKISKISPGAFAPL---VKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEI 133

Query: 402 GGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ 461
              + +++F+ L+++  ++L  N L        I                          
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNPLKS----SGIE------------------------- 163

Query: 462 NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP-LPSN 520
                 F  +      + ++   +                            IP  LP +
Sbjct: 164 ---NGAFQGMKKLS-YIRIADTNITT--------------------------IPQGLPPS 193

Query: 521 ATSLNLSKNKFSGSISFLC--SLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
            T L+L  NK +  +       L+N L  L LS N +S            L  L+L NN 
Sbjct: 194 LTELHLDGNKIT-KVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 579 FFGKIPNSMGFLHNIRSLSLYN----------RSQYEYKSTLGLVKILDLSSNKLG-GGV 627
              K+P  +     I+ + L+N               Y +       + L SN +    +
Sbjct: 252 -LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 628 PKEI-MDLVGLVALNLSRN 645
                  +    A+ L   
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 62/346 (17%), Positives = 110/346 (31%), Gaps = 90/346 (26%)

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
             +L L  N +   I +  F NL  L  L L +N              +++ IS      
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN--------------KISKIS------ 92

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
                         P  F  L     L  LS NQ++ ++P                    
Sbjct: 93  --------------PGAFAPLVKLERL-YLSKNQLK-ELP-------------------- 116

Query: 511 EGPIPPLPSNATSLNLSKNKFS----GSISFLCSLSNRLIYLDLSNNLL-SGKLPDCWFQ 565
                 +P     L + +N+ +       + L    N++I ++L  N L S  + +  FQ
Sbjct: 117 ----EKMPKTLQELRVHENEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQ 168

Query: 566 -FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN----RSQYEYKSTLGLVKILDLSS 620
               L  + +A+ N    IP   G   ++  L L      +        L  +  L LS 
Sbjct: 169 GMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 621 NKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF-------FG 673
           N +       + +   L  L+L+ N L  ++   +   K +  + L  N         F 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 674 GIPSSLSQLSGLSVMDLSYNNLS-GKIPLGT--QLQSFNELVYAGN 716
             P   ++ +  S + L  N +   +I   T   +     +     
Sbjct: 285 P-PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 7e-24
 Identities = 53/219 (24%), Positives = 76/219 (34%), Gaps = 12/219 (5%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
              KL  LT L LS N  S              L YL LS       +      L +L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC-DL 224
           LD   +NL           L +LIYL +         N   + + L SL  L +      
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQ 163

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
              +P     L    +L  +DL++  L   + P  FN  SSL   +++  N         
Sbjct: 164 ENFLPDIFTEL---RNLTFLDLSQCQLE-QLSPTAFNSLSSL-QVLNMSHNNFFSLDTFP 218

Query: 285 FGRMVSLRYLDLSSNELRGIPK--FLGNMCGLKILYLSG 321
           +  + SL+ LD S N +    K         L  L L+ 
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 61/280 (21%), Positives = 98/280 (35%), Gaps = 47/280 (16%)

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           +P  +   S    L+L  N L S  +      L+ L  L L  N LS      Q      
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           SL  L L    +   + S+ L L     LE +D   +NL                    +
Sbjct: 79  SLKYLDLSFNGV-ITMSSNFLGL---EQLEHLDFQHSNLK------------------QM 116

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSG-KELKGQLSE 330
                       F  + +L YLD+S    R         +  L++L ++G    +  L +
Sbjct: 117 SE-------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 331 FIQDLSSGCTKNSLEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIG 386
              +L       +L +L LS  ++      +  +L   SSL+ LN+ +N           
Sbjct: 170 IFTELR------NLTFLDLSQCQLEQLSPTAFNSL---SSLQVLNMSHNNFFSLDTFPYK 220

Query: 387 QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL 426
            L  L++L  + N +     + L    S LA L+L  N  
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 8e-21
 Identities = 63/266 (23%), Positives = 101/266 (37%), Gaps = 22/266 (8%)

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL- 173
           T +  +    +  S+P   G     + L L S +           L++L  L LS N L 
Sbjct: 10  TEIRCNSKGLT--SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
           F G         +SL YL L  N +   S+       L  L  L     +L  +   S+ 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSV- 121

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLR 292
              S  +L  +D++  +     +  +FN  SSL   + +  N  Q +     F  + +L 
Sbjct: 122 -FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLT 178

Query: 293 YLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
           +LDLS  +L  +      ++  L++L +S        +   + L+      SL+ L  S 
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------SLQVLDYSL 232

Query: 352 NEITGSMPNL--GEFSSLKQLNLENN 375
           N I  S         SSL  LNL  N
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 58/276 (21%), Positives = 91/276 (32%), Gaps = 58/276 (21%)

Query: 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI---PKFLGNMCGLKILYLSGKELK 325
           R+ L SN+LQ      F ++  L  L LSSN L       +       LK L LS   + 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 326 GQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFS---SLKQLNLENNLLNGTIH 382
             +S     L        LE L    + +   M     F    +L  L++ +       +
Sbjct: 92  -TMSSNFLGLEQ------LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 383 KSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP----- 437
                L  LE+LK+ GNS        +F+ L  L  LDL+   L        + P     
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNS 197

Query: 438 -FQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRF 496
              L  +++ H          L         +  L   ++ L+ S N +           
Sbjct: 198 LSSLQVLNMSHNNF-----FSLD-----TFPYKCLNSLQV-LDYSLNHIM---------- 236

Query: 497 DISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
                         +      PS+   LNL++N F+
Sbjct: 237 -------TSKKQELQ----HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 30/190 (15%)

Query: 514 IPP-LPSNATSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGK--LPDCWFQFDSL 569
           +P  +PS+AT L L  NK           L+  L  L LS+N LS K       F   SL
Sbjct: 22  VPTGIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK 629
             L+L+ N     + ++   L  +  L                    D   + L      
Sbjct: 81  KYLDLSFNGV-ITMSSNFLGLEQLEHL--------------------DFQHSNLKQMSEF 119

Query: 630 EI-MDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPS-SLSQLSGLS 686
            + + L  L+ L++S  +        I   L SL+ L ++ N F         ++L  L+
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 687 VMDLSYNNLS 696
            +DLS   L 
Sbjct: 179 FLDLSQCQLE 188

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (261), Expect = 1e-23
 Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 32/479 (6%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
             T L++S+N  S     +   SL KL  L +S                 L++LDLS N 
Sbjct: 22  KTTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           L     +       +L +L L  N         +    +  L  L L +  L       +
Sbjct: 81  L---VKISC-HPTVNLKHLDLSFNAFDALPI-CKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
            +LN S  L  + L E          L + ++  +  +   + +    +  +   + +L 
Sbjct: 136 AHLNISKVL--LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 293 YLDLSSNELRGIPKFLGNM-------CGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
             ++          +  ++         L  L L+  E        I  L    T     
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIG---QLFKLEMLKLNGNSLG 402
             ++               +SLK L++   + +               + +     +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT- 312

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN 462
            ++     S +S    LD ++N LT     +     +L T+ L   +        L+  +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ--------LKELS 364

Query: 463 TVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF-EGPIPPLPSNA 521
            +      +   +  L++S N +          +  S   +++SSN   +     LP   
Sbjct: 365 KIAEMTTQMKSLQQ-LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNF 579
             L+L  NK       +  L   L  L++++N L   +PD  F    SL  + L  N +
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEA-LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 8e-23
 Identities = 95/494 (19%), Positives = 178/494 (36%), Gaps = 52/494 (10%)

Query: 240 SLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSN 299
              ++++++N ++  ++       S L   + +  N++Q      F     L YLDLS N
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLR-ILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 300 ELRGIPKFLGNMCGLKILYLSGKELKG-QLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM 358
           +L  I         LK L LS        + +   ++S       L++L LS+  +  S 
Sbjct: 80  KLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEKS- 130

Query: 359 PNLGEFSSLKQLNLENNLLNGTIHK-SIGQLFKLEMLKLNGNSLGGVISEAL-FSNLSRL 416
            ++   + L    +   L      K     L       L+           +   ++  +
Sbjct: 131 -SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRM 476
           A L+L++    LE +        L  +                T N+       + H  +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 477 L-LNLSSNQMRGKVPDLSLRFDISGPGI------DISSNHFEGPIPPLP---SNATSLNL 526
              ++S+ +++G++      FD SG  +       + S+ F  P   +    SN    N 
Sbjct: 250 WYFSISNVKLQGQLD--FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS 586
           + +          S  +  ++LD SNNLL+  + +       L  L L  N    ++   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKI 366

Query: 587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRN 645
                 ++SL                 + LD+S N +     K        L++LN+S N
Sbjct: 367 AEMTTQMKSL-----------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 646 NLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT-- 703
            LT  I   +     +  LDL  N+    IP  + +L  L  ++++ N L   +P G   
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 704 QLQSFNELVYAGNP 717
           +L S  ++    NP
Sbjct: 466 RLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 80/414 (19%), Positives = 155/414 (37%), Gaps = 34/414 (8%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
              +L +LDLS N F    I +  G++ +L +LGLS+          + +L+  + L + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 170 FNNLFSGENLDWLSHL--SSLIYLYLDLNDLSNFSNWVQL-LSKLHSLTTLSLYSCDLPP 226
                  E+ + L      SL  ++    +     +     ++ L       +   +   
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLT-NSVYPWLFNVSSSLVDRISLPSNQLQG-----S 280
              S L  L ++  L  + L     T NS    L  V  + V   S+ + +LQG      
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFL-GNMCGLKILYLSGKELKGQLSEFIQDLSSGC 339
              +   + +L    + S+       ++      + I   +    +         +S   
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS--- 324

Query: 340 TKNSLEWLHLSSNEITGSMP-NLGEFSSLKQLNLENNLLN--GTIHKSIGQLFKLEMLKL 396
                  L  S+N +T ++  N G  + L+ L L+ N L     I +   Q+  L+ L +
Sbjct: 325 ---PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPK 456
           + NS+     +   S    L +L+++ N LT +     +PP ++  + L   K+      
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPP-RIKVLDLHSNKI------ 433

Query: 457 WLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
                 ++P     L   +  LN++SNQ++  VPD       S   I + +N +
Sbjct: 434 -----KSIPKQVVKLEALQE-LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 87  KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS 146
            L LQ           ++T  +  LQ    LD+S+N+ S             L  L +SS
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQ---QLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQ 206
                 I   L    R++ LDL  N + S      +  L +L  L +  N L +  +   
Sbjct: 409 NILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQ--VVKLEALQELNVASNQLKSVPD--G 462

Query: 207 LLSKLHSLTTLSLYS 221
           +  +L SL  + L++
Sbjct: 463 IFDRLTSLQKIWLHT 477

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (254), Expect = 2e-23
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 19/298 (6%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
             ++ LDLS N +    N   L    +L  L L  N ++         S L SL  L L 
Sbjct: 52  EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLS 108

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              L  +  S    L+S   L  ++L  N         LF+  + L        +     
Sbjct: 109 YNYLSNLSSSWFKPLSS---LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGC 339
             + F  +  L  L++ +++L+      L ++  +  L L  K+    L E   D++S  
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 340 TKNSLEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
               L    L +   +    G   +L +  + + + + +  L   + K + Q+  L  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLT-----LEFSHDWIPPFQLNTISLGHC 448
            + N L   + + +F  L+ L  + L  N        +++   W+            C
Sbjct: 284 FSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 340

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 55/257 (21%), Positives = 97/257 (37%), Gaps = 27/257 (10%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRL 163
            L +  +L  L L+ N    ++I E  F   LG L +L LS    +  +       LS L
Sbjct: 71  DLQRCVNLQALVLTSNGI--NTIEEDSFSS-LGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSC 222
            FL+L  N   +       SHL+ L  L +   D  +      +  + L  L  L + + 
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDAS 184

Query: 223 DLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI-------SLPSN 275
           DL    P SL ++    ++  + L        +     +V+SS+           +   +
Sbjct: 185 DLQSYEPKSLKSI---QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 276 QLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDL 335
           +L      +  +  + R + ++   L  + K L  + GL  L  S  +LK         L
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 336 SSGCTKNSLEWLHLSSN 352
           +      SL+ + L +N
Sbjct: 301 T------SLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 58/360 (16%), Positives = 112/360 (31%), Gaps = 73/360 (20%)

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKL 396
           +  + +       SS  +  S+P+ G   ++K L+L NN +    +  + +   L+ L L
Sbjct: 26  ASLSCDRNGICKGSSGSLN-SIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL 83

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPK 456
             N +   I E  FS+L  L  LDL+ N L+       +                     
Sbjct: 84  TSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN------LSS------------------- 117

Query: 457 WLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP 516
                    +WF  L+     LNL  N  +                + + +      I  
Sbjct: 118 ---------SWFKPLSSLT-FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLA 575
                         F+G       L+  L  L++  + L         +   ++  L L 
Sbjct: 168 ------------KDFAG-------LTF-LEELEIDASDLQ-SYEPKSLKSIQNVSHLILH 206

Query: 576 NNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV 635
                  +   +    ++  L L +              +     ++L  G    ++   
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRD------------TDLDTFHFSELSTGETNSLIKKF 254

Query: 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
               + ++  +L  Q+   + Q+  L  L+ SRNQ          +L+ L  + L  N  
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 31/214 (14%)

Query: 517 LPSNATSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSLVILNL 574
           L     SL+LS N+ +  S S L    N L  L L++N ++  + +  F    SL  L+L
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 575 ANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD- 633
           + N     + +   +   + SL                   L+L  N         +   
Sbjct: 108 SYNYL-SNLSS--SWFKPLSSL-----------------TFLNLLGNPYKTLGETSLFSH 147

Query: 634 LVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692
           L  L  L +   +   +I  K    L  L+ L++  +      P SL  +  +S + L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 693 NNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRN 726
                 +         +        EL    L  
Sbjct: 208 KQHI-LLLEI----FVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 22/214 (10%)

Query: 522 TSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNF 579
             L+LS N  S  S S+   LS+ L +L+L  N          F     L IL + N + 
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 580 FGKIPNSM-GFLHNIRSLSLY-NR-SQYEYKSTLGLVKI--LDLSSNKLGGGVPKEIMD- 633
           F KI       L  +  L +  +    YE KS   +  +  L L   +    + +  +D 
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDV 220

Query: 634 LVGLVALNLSRNNLTGQ--------ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
              +  L L   +L            T  + +  +   + ++    F  +   L+Q+SGL
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGL 279

Query: 686 SVMDLSYNNLSGKIPLGT--QLQSFNELVYAGNP 717
             ++ S N L   +P G   +L S  ++    NP
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 60/274 (21%), Positives = 94/274 (34%), Gaps = 21/274 (7%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
               LQHL  L L  N  S   I E  F   L KL  L +S       IP  L   S L 
Sbjct: 73  DFKGLQHLYALVLVNNKIS--KIHEKAFSP-LRKLQKLYISKNHLVE-IPPNL--PSSLV 126

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L +  N +         S L ++  + +  N L N          L  L  L +    L
Sbjct: 127 ELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
              IP  L       +L  + L  N +  ++        S L  R+ L  NQ++     +
Sbjct: 185 T-GIPKDLPE-----TLNELHLDHNKIQ-AIELEDLLRYSKLY-RLGLGHNQIRMIENGS 236

Query: 285 FGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSL 344
              + +LR L L +N+L  +P  L ++  L+++YL    +          +  G  +   
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 345 EWLHLSSNEITGSMPNLGEFS---SLKQLNLENN 375
             + L +N +         F        +   N 
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 56/293 (19%), Positives = 102/293 (34%), Gaps = 45/293 (15%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
                LDL  N++ S    D    L  L  L L  N +S      +  S L  L  L + 
Sbjct: 54  PDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHE--KAFSPLRKLQKLYIS 110

Query: 221 S---CDLPPIIPSSLLNLNSSN---------------SLEVIDLTENNLTNSVYPWLFNV 262
                ++PP +PSSL+ L   +               ++  I++  N L NS +      
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 263 SSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSG 321
              L   + +   +L G   +      +L  L L  N+++ I    L     L  L L  
Sbjct: 171 GLKLN-YLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 322 KELKGQLSEFIQDLSSGCTKN--SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNG 379
            +        I+ + +G      +L  LHL +N+++     L +   L+ + L  N +  
Sbjct: 227 NQ--------IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 380 TIHKSI-------GQLFKLEMLKLNGNSLGGV-ISEALFSNLSRLAALDLADN 424
            +  +         +      + L  N +    +  A F  ++   A+   + 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 57/359 (15%), Positives = 109/359 (30%), Gaps = 79/359 (22%)

Query: 238 SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLS 297
              L V+  ++  L  +V P    +S      + L +N +     + F  +  L  L L 
Sbjct: 32  HCHLRVVQCSDLGLK-AV-PK--EISPDTT-LLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 298 SNELRGI-PKFLGNMCGLKILYLSGKELKG------------QLSE-FIQDLSSGCTKN- 342
           +N++  I  K    +  L+ LY+S   L              ++ +  I+ +  G     
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 343 -SLEWLHLSSNEITGSMPNLGEFS--SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399
            ++  + +  N +  S    G F    L  L +    L   I K +     L  L L+ N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 400 SLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQ 459
            +   I        S+L  L L  N + +  +        L  + L + K+         
Sbjct: 204 KI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--------- 253

Query: 460 TQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPS 519
             + VP    DL   + ++ L +N +                                  
Sbjct: 254 --SRVPAGLPDLKLLQ-VVYLHTNNIT--------------------------------- 277

Query: 520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANN 577
                 +  N F      +       I L  +N +   ++    F+     + +   N 
Sbjct: 278 -----KVGVNDFCPVGFGVKRAYYNGISLF-NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 41/202 (20%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
             P       L YL +S      + IP+                               L
Sbjct: 164 FEPGAFDGLKLNYLRISEAKL--TGIPK--------------------------DLPETL 195

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
             L L  N + + E  D L   S L  L L  N +    N    LS L +L  L L +  
Sbjct: 196 NELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNK 252

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLT----NSVYPWLFNVSSSLVDRISLPSNQLQG 279
           L   +P+ L +L     L+V+ L  NN+T    N   P  F V  +  + ISL +N +  
Sbjct: 253 L-SRVPAGLPDL---KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 280 SI--PEAFGRMVSLRYLDLSSN 299
               P  F  +     +   + 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
             L +SKN          +L + L+ L + +N +       +    ++  + +  N    
Sbjct: 105 QKLYISKNHLV---EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 582 KIPNSMGFLH-NIRSLSL-YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA 639
                  F    +  L +   +     K     +  L L  NK+     ++++    L  
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 640 LNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGK 698
           L L  N +   I       L +L  L L  N+    +P+ L  L  L V+ L  NN++ K
Sbjct: 222 LGLGHNQIR-MIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-K 278

Query: 699 IPLGT 703
           + +  
Sbjct: 279 VGVND 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 40/267 (14%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
           S  ++L+L  NN+   +      HL  L  L L  N +          + L SL TL L+
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLELF 131

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              L  I   +   L+    L  + L  N +  S+  + FN   SL+        +L+  
Sbjct: 132 DNWLTVIPSGAFEYLSK---LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT 340
              AF  + +L+YL+L    ++ +P                             L     
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNL-------------------------TPLV---- 218

Query: 341 KNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399
              LE L +S N      P      SSLK+L + N+ ++     +   L  L  L L  N
Sbjct: 219 --GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 400 SLGGVISEALFSNLSRLAALDLADNSL 426
           +L   +   LF+ L  L  L L  N  
Sbjct: 277 NL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 64/284 (22%), Positives = 100/284 (35%), Gaps = 46/284 (16%)

Query: 186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID 245
           S+  YL L  N++            LH L  L L    +  I   +   L S   L  ++
Sbjct: 75  SNTRYLNLMENNIQMIQA--DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS---LNTLE 129

Query: 246 LTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP 305
           L +N LT                   +P          AF  +  LR L L +N +  IP
Sbjct: 130 LFDNWLT------------------VIP--------SGAFEYLSKLRELWLRNNPIESIP 163

Query: 306 KF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF 364
            +    +  L  L L       +L    +    G    +L++L+L    I   MPNL   
Sbjct: 164 SYAFNRVPSLMRLDLGEL---KKLEYISEGAFEGLF--NLKYLNLGMCNIK-DMPNLTPL 217

Query: 365 SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
             L++L +  N        S   L  L+ L +  + +  +I    F  L+ L  L+LA N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276

Query: 425 SLTLEFSHDWIPPFQLNTISLGH------CKMGPRFPKWLQTQN 462
           +L+      + P   L  + L H      C +      WL+   
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW-LAWWLREYI 319

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 17/219 (7%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
               L HL  L L RN+     I    F G L  L+ L L               LS+L+
Sbjct: 94  TFRHLHHLEVLQLGRNSI--RQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYL-DLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
            L L  N + S  +    + + SL+ L L +L  L   S        L +L  L+L  C+
Sbjct: 151 ELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCN 207

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           +       + NL     LE ++++ N+    + P  F+  SSL  ++ + ++Q+      
Sbjct: 208 I-----KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSL-KKLWVMNSQVSLIERN 260

Query: 284 AFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSG 321
           AF  + SL  L+L+ N L  +P      +  L  L+L  
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           A   L  L  L+L  N  +   IP   F   L KL  L L +        +    +  L 
Sbjct: 118 AFNGLASLNTLELFDNWLT--VIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            LDL         +      L +L YL L + ++ +    +  L+ L  L  L +     
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSGNHF 230

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
           P I P S   L   +SL+ + +  + ++  +    F+  +SLV  ++L  N L     + 
Sbjct: 231 PEIRPGSFHGL---SSLKKLWVMNSQVS-LIERNAFDGLASLV-ELNLAHNNLSSLPHDL 285

Query: 285 FGRMVSLRYLDLSSN 299
           F  +  L  L L  N
Sbjct: 286 FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 65/251 (25%), Positives = 98/251 (39%), Gaps = 44/251 (17%)

Query: 514 IPP-LPSNATSLNLSKNKFS----GSISFLCSL------SNR--------------LIYL 548
           +P  +PSN   LNL +N        +   L  L       N               L  L
Sbjct: 69  VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128

Query: 549 DLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFGKIPNSM-GFLHNIRSLSLYNRSQYEY 606
           +L +N L+  +P   F+    L  L L NN     IP+     + ++  L L    + EY
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 607 KST-----LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK-IGQLKS 660
            S      L  +K L+L    +   +P  +  LVGL  L +S N+   +I P     L S
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSS 243

Query: 661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT--QLQSFNELVYAGNPE 718
           L  L +  +Q      ++   L+ L  ++L++NNLS  +P      L+   EL    NP 
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

Query: 719 LCG---LPLRN 726
            C    L L  
Sbjct: 303 NCDCDILWLAW 313

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           P L  L  L  L++S N+F    I       L  L  L + +++ +    +    L+ L 
Sbjct: 212 PNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 165 FLDLSFNNLFSGENLDW--LSHLSSLIYLYLDLN------DLSNFSNWVQLLSKLHSLTT 216
            L+L+ NNL    +L     + L  L+ L+L  N      D+   + W   L +     +
Sbjct: 270 ELNLAHNNL---SSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWW---LREYIPTNS 323

Query: 217 LSLYSCDLPP 226
                C  P 
Sbjct: 324 TCCGRCHAPM 333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 59/268 (22%), Positives = 97/268 (36%), Gaps = 42/268 (15%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
           +  + L+L  N +   +      HL  L  L L  N +          + L +L TL L+
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELF 120

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS-NQLQG 279
              L  I   + + L+    L+ + L  N +  S+  + FN   SL  R+ L    +L  
Sbjct: 121 DNRLTTIPNGAFVYLSK---LKELWLRNNPIE-SIPSYAFNRIPSLR-RLDLGELKRLSY 175

Query: 280 SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGC 339
               AF  + +LRYL+L+   LR IP                             L    
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPNL-------------------------TPLI--- 207

Query: 340 TKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNG 398
               L+ L LS N ++   P        L++L +  + +      +   L  L  + L  
Sbjct: 208 ---KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 399 NSLGGVISEALFSNLSRLAALDLADNSL 426
           N+L  ++   LF+ L  L  + L  N  
Sbjct: 265 NNL-TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 5e-21
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 20/255 (7%)

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           +   L+L+   +  I  +S  +L     LE++ L+ N++  ++    FN  ++L   + L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRH---LEILQLSRNHIR-TIEIGAFNGLANLN-TLEL 119

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFL-GNMCGLKILYLSGKELKGQLSEF 331
             N+L      AF  +  L+ L L +N +  IP +    +  L+ L L       +LS  
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL---KRLSYI 176

Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKL 391
            +    G +  +L +L+L+   +   +PNL     L +L+L  N L+     S   L  L
Sbjct: 177 SEGAFEGLS--NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 392 EMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGH---- 447
           + L +  + +  VI    F NL  L  ++LA N+LTL     + P   L  I L H    
Sbjct: 234 QKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

Query: 448 --CKMGPRFPKWLQT 460
             C +      W++ 
Sbjct: 293 CNCDILW-LSWWIKD 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 17/219 (7%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           +   L+HL  L LSRN+    +I    F G L  L+ L L               LS+L+
Sbjct: 83  SFKHLRHLEILQLSRNHI--RTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYL-DLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
            L L  N + S  +    + + SL  L L +L  LS  S        L +L  L+L  C+
Sbjct: 140 ELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCN 196

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           L       + NL     L+ +DL+ N+L+ ++ P  F     L  ++ +  +Q+Q     
Sbjct: 197 L-----REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHL-QKLWMIQSQIQVIERN 249

Query: 284 AFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSG 321
           AF  + SL  ++L+ N L  +P      +  L+ ++L  
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           A   L +L  L+L  N    ++IP      L KL  L L +        +    +  L+ 
Sbjct: 107 AFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LDL      S  +      LS+L YL L + +L      +  L+ L  L  L L    L 
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----IPNLTPLIKLDELDLSGNHLS 220

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            I P S   L     L+ + + ++ +   +    F+   SLV  I+L  N L     + F
Sbjct: 221 AIRPGSFQGL---MHLQKLWMIQSQIQ-VIERNAFDNLQSLV-EINLAHNNLTLLPHDLF 275

Query: 286 GRMVSLRYLDLSSN 299
             +  L  + L  N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 42/250 (16%)

Query: 514 IPP-LPSNATSLNLSKNKFS----GSISFLCSLS--------------------NRLIYL 548
           +P  + +N   LNL +N+       S   L  L                       L  L
Sbjct: 58  VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117

Query: 549 DLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFGKIPNSM-GFLHNIRSLSLYNRSQYEY 606
           +L +N L+  +P+  F     L  L L NN     IP+     + ++R L L    +  Y
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 607 KST-----LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL 661
            S      L  ++ L+L+   L   +P  +  L+ L  L+LS N+L+         L  L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT--QLQSFNELVYAGNPEL 719
             L + ++Q      ++   L  L  ++L++NNL+  +P      L     +    NP  
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

Query: 720 CG---LPLRN 726
           C    L L  
Sbjct: 293 CNCDILWLSW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
           A   L +L YL+L+  N     IP     L KL  L LS    +   P     L  LQ L
Sbjct: 180 AFEGLSNLRYLNLAMCNL--REIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS----C 222
            +  + +   E  +   +L SL+ + L  N+L+   +   L + LH L  + L+     C
Sbjct: 237 WMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPH--DLFTPLHHLERIHLHHNPWNC 293

Query: 223 D 223
           +
Sbjct: 294 N 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           P L  L  L  LDLS N+   S+I       L  L  L +  ++      +   NL  L 
Sbjct: 201 PNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN------DLSNFSNWVQLLSKLHSLTTLS 218
            ++L+ NNL    + D  + L  L  ++L  N      D+   S W   +  +    T  
Sbjct: 259 EINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCDILWLSWW---IKDMAPSNTAC 314

Query: 219 LYSCDLPP 226
              C+ PP
Sbjct: 315 CARCNTPP 322

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 1e-20
 Identities = 59/321 (18%), Positives = 115/321 (35%), Gaps = 58/321 (18%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLD 167
              L +   +   ++N +          L  ++ L              +  L+ L  L+
Sbjct: 15  DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
           L  N +    +L  L +L+ +  L L  N L N S     ++ L S+ TL L S  +   
Sbjct: 70  LKDNQI---TDLAPLKNLTKITELELSGNPLKNVSA----IAGLQSIKTLDLTSTQI--- 119

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
             + +  L   ++L+V+ L  N +TN                                  
Sbjct: 120 --TDVTPLAGLSNLQVLYLDLNQITNI----------------------------SPLAG 149

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           + +L+YL + + ++  +   L N+  L  L     +        I D+S   +  +L  +
Sbjct: 150 LTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK--------ISDISPLASLPNLIEV 200

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
           HL +N+I+  +  L   S+L  + L N  +     + +     L +  +     G  I+ 
Sbjct: 201 HLKNNQIS-DVSPLANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 408 ALFSNLSRLAALDLADNSLTL 428
           A  S+    A+ +L  N  + 
Sbjct: 257 ATISDNGTYASPNLTWNLTSF 277

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 57/303 (18%), Positives = 106/303 (34%), Gaps = 67/303 (22%)

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           + +   +    + +        ++ G+  L   G          +  +      N+L  L
Sbjct: 18  LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTG--------VTTIEGVQYLNNLIGL 68

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
            L  N+IT  +  L   + + +L L  N L      +I  L  ++ L L    +  V   
Sbjct: 69  ELKDNQIT-DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKMGPRFPKWLQTQNT 463
              + LS L  L L  N +T       I P      L  +S+G+ ++           + 
Sbjct: 125 --LAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQV-----------SD 165

Query: 464 VPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATS 523
           +     +L+     L    N++           DIS             P+  LP N   
Sbjct: 166 LTP-LANLSKLTT-LKADDNKIS----------DIS-------------PLASLP-NLIE 199

Query: 524 LNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583
           ++L  N+ S  +S L + SN L  + L+N  ++ +     F  ++LV+ N+        I
Sbjct: 200 VHLKNNQIS-DVSPLANTSN-LFIVTLTNQTITNQPV---FYNNNLVVPNVVKGPSGAPI 254

Query: 584 PNS 586
             +
Sbjct: 255 APA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 15/201 (7%)

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
              T+L+      + +I  +  L+N LI L+L +N ++  L         +  L L+ N 
Sbjct: 41  DGITTLSAFGTGVT-TIEGVQYLNN-LIGLELKDNQIT-DLAPLK-NLTKITELELSGNP 96

Query: 579 FFGKIPNSMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG 636
              K  +++  L +I++L L +   +     + L  +++L L  N++       +  L  
Sbjct: 97  L--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT--NISPLAGLTN 152

Query: 637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
           L  L++    ++  +TP +  L  L  L    N+      S L+ L  L  + L  N +S
Sbjct: 153 LQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS 208

Query: 697 GKIPLGTQLQSFNELVYAGNP 717
              PL     +   +      
Sbjct: 209 DVSPLA-NTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
           +N   L L  N+ +  ++ L +L+  +  L+LS N L            S+  L+L +  
Sbjct: 63  NNLIGLELKDNQIT-DLAPLKNLTK-ITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQ 118

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKI--LDLSSNKLGGGVPKEIMDLVG 636
                P +   L N++ L L            GL  +  L + + ++    P  + +L  
Sbjct: 119 ITDVTPLAG--LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
           L  L    N ++  I+P +  L +L  + L  NQ      S L+  S L ++ L+   ++
Sbjct: 175 LTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT 230

Query: 697 GKIPL 701
            +   
Sbjct: 231 NQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 59/378 (15%), Positives = 122/378 (32%), Gaps = 98/378 (25%)

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEA 408
                I   +      ++  ++    + +  T+  +   L  +  L   G  +  +    
Sbjct: 4   TQPTAIN-VIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG-- 58

Query: 409 LFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKMGPRFPKWLQTQNTV 464
               L+ L  L+L DN +T       + P     ++  + L    +     K +     +
Sbjct: 59  -VQYLNNLIGLELKDNQIT------DLAPLKNLTKITELELSGNPL-----KNVSAIAGL 106

Query: 465 PNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL 524
            +    +      L+L+S Q+    P   L                        SN   L
Sbjct: 107 QS----IKT----LDLTSTQITDVTPLAGL------------------------SNLQVL 134

Query: 525 NLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS-----GKLPDCWFQFDSLVILNLANNNF 579
            L  N+ + +IS L  L+N L YL + N  +S       L         L  L   +N  
Sbjct: 135 YLDLNQIT-NISPLAGLTN-LQYLSIGNAQVSDLTPLANLS-------KLTTLKADDNK- 184

Query: 580 FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA 639
                     + +I  L+           +L  +  + L +N++       + +   L  
Sbjct: 185 ----------ISDISPLA-----------SLPNLIEVHLKNNQIS--DVSPLANTSNLFI 221

Query: 640 LNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI-PSSLSQLSGLSVMDLSYNNLSGK 698
           + L+   +T      +    +L   ++ +      I P+++S     +  +L++N  S  
Sbjct: 222 VTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSF- 277

Query: 699 IPLGTQLQSFNELVYAGN 716
             +     +FN+ V   N
Sbjct: 278 --INNVSYTFNQSVTFKN 293

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 8e-20
 Identities = 85/495 (17%), Positives = 168/495 (33%), Gaps = 58/495 (11%)

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE- 283
           P  +P     L          L++N+++  +     +  S L   + L  N+++ S+   
Sbjct: 47  PKDLPPRTKAL---------SLSQNSIS-ELRMPDISFLSELR-VLRLSHNRIR-SLDFH 94

Query: 284 AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK--GQLSEFIQDLSSGCTK 341
            F     L YLD+S N L+ I      M  L+ L LS  +        EF  +L+     
Sbjct: 95  VFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEF-GNLT----- 146

Query: 342 NSLEWLHLSSNEITGSMPNLGEFSSLK----QLNLENNLLNGTIHKSIGQL-FKLEMLKL 396
             L +L LS+ +      +L   + L      L+L +  + G   +S+      +  L  
Sbjct: 147 -KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLN--TISLGHCKMGPRF 454
           + NSL  V      + L  L   ++  N    +    ++         +++    +   +
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 455 PKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGI----DISSNHF 510
              ++       W   + +    LN+ +  +  ++      +  +         + +  F
Sbjct: 264 KCSVKLFQFF--WPRPVEY----LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 511 EGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLI---YLDLSNNLLSGKLPDCWFQFD 567
                 L S    +N+     S +               +L+ + N+ +  +        
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKS--------TLGLVKILDLS 619
            L  L L  N              N+ SL   + S     S            + +L+LS
Sbjct: 378 RLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 620 SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
           SN L G V + +     +  L+L  N +   I   +  L++L  L+++ NQ         
Sbjct: 437 SNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493

Query: 680 SQLSGLSVMDLSYNN 694
            +L+ L  + L  N 
Sbjct: 494 DRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 84/480 (17%), Positives = 146/480 (30%), Gaps = 54/480 (11%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDL 168
            L  L  L LS N     S+          L YL +S       I      ++ L+ LDL
Sbjct: 74  FLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDL 128

Query: 169 SFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPII 228
           SFN+           +L+ L +L L                 L  +  L L S  +    
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI-LLDLVSYHIKGGE 187

Query: 229 PSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL-------PSNQLQGSI 281
             SL   N++  L ++    +  +  V   +  +    +  I L           L    
Sbjct: 188 TESLQIPNTT-VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 282 PEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTK 341
                  V+L++++ +      + +F      ++ L +    +  ++       S    K
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRP-VEYLNIYNLTITERIDREEFTYSETALK 305

Query: 342 NSLEWLHLSSNEITGSMPNLG-EFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNS 400
            SL   H+ +     S   L   F+ +    L  +                  L    N 
Sbjct: 306 -SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 401 LGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQT 460
               + +   S L RL  L L  N L   F    +    ++++                 
Sbjct: 365 FTDSVFQG-CSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV-------SLNSL 415

Query: 461 QNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSN 520
            +   +         ++LNLSSN + G V                           LP  
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFR------------------------CLPPK 451

Query: 521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNF 579
              L+L  N+       +  L   L  L++++N L   +PD  F    SL  + L +N +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQA-LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 97/525 (18%), Positives = 171/525 (32%), Gaps = 81/525 (15%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
            R + L LS N++      D +S LS L  L L  N + +    V        L  L + 
Sbjct: 52  PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHV--FLFNQDLEYLDVS 108

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              L  I    + +L        +DL+ N+                     LP       
Sbjct: 109 HNRLQNISCCPMASLRH------LDLSFNDFD------------------VLP------- 137

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
           + + FG +  L +L LS+ + R +             +L L    +KG  +E +Q     
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP--- 194

Query: 339 CTKNSLEWLHLSSNEITG-SMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397
               +   LHL  +  +  S+      ++L  L L N  LN    + +            
Sbjct: 195 ----NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 398 GNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKW 457
             ++     E  +    +L           L   +  I   +++     + +   +    
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMI 309

Query: 458 LQTQNTV----PNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGP 513
              +N V        + +  +  +  LS +                       +      
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISD----------------------TPFIHMV 347

Query: 514 IPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN 573
            PP PS+ T LN ++N F+ S+   CS   RL  L L  N L            ++  L 
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 574 LANN--NFFGKIPNSMGF--LHNIRSLSLYNRSQYEYKSTLGLV---KILDLSSNKLGGG 626
             +   N               +I  L+L + +         L    K+LDL +N++   
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSS-NMLTGSVFRCLPPKVKVLDLHNNRI-MS 464

Query: 627 VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           +PK++  L  L  LN++ N L         +L SL ++ L  N +
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 58/352 (16%), Positives = 110/352 (31%), Gaps = 24/352 (6%)

Query: 87  KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS 146
            LDL    FD  P+          L  LT+L LS   F    +            L L S
Sbjct: 125 HLDLSFNDFDVLPVCK----EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180

Query: 147 AEFAGPIPHQLGNL-SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN--DLSNFSN 203
               G     L    + +  L    N+LFS +    ++ L  L    + LN  +      
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240

Query: 204 WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVS 263
           ++  L++  +L  ++L   +        L        +E +++    +T  +    F  S
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 264 SSLVDRIS---LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYL 319
            + +  +    + +     S    +     +    LS ++   I      +      L  
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 320 SGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNG 379
           +       + +    L        L+ L L  N +           ++  L   +  LN 
Sbjct: 361 TQNVFTDSVFQGCSTLK------RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 380 TIHKSIGQLF----KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
               +  +       + +L L+ N L G +   L   +     LDL +N + 
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 64/440 (14%), Positives = 121/440 (27%), Gaps = 74/440 (16%)

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG----CTKNSLE 345
               +D S+  L  +PK        K L LS           I +L        ++  L 
Sbjct: 32  LESMVDYSNRNLTHVPK--DLPPRTKALSLS--------QNSISELRMPDISFLSE--LR 79

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQ---LNLENNLLNGTIHKSI--GQLFKLEMLKLNGNS 400
            L LS N I  S+     F   +    L++ +N L     ++I    +  L  L L+ N 
Sbjct: 80  VLRLSHNRIR-SLDF-HVFLFNQDLEYLDVSHNRL-----QNISCCPMASLRHLDLSFND 132

Query: 401 LGGVISEALFSNLSRLAALDLADNSLT----LEFSHDWIPPFQLNTISLGHCKMGPRFPK 456
              +     F NL++L  L L+         L  +H  +    L+ +S            
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY----------- 181

Query: 457 WLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP 516
               +              + L    N +     ++S+         +I  N        
Sbjct: 182 --HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
              +  +   +    +            L +++ +           W     +  LN+ N
Sbjct: 240 TFLSELTRGPTLLNVT------------LQHIETTWKCSVKLFQFFWP--RPVEYLNIYN 285

Query: 577 NNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG 636
                +I                        + L  + I  + +                
Sbjct: 286 LTITERIDREEFTYSE---------------TALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
           +    LS ++             S  FL+ ++N F   +    S L  L  + L  N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 697 GKIPLGTQLQSFNELVYAGN 716
               +    ++ + L     
Sbjct: 391 NFFKVALMTKNMSSLETLDV 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 8e-20
 Identities = 79/365 (21%), Positives = 128/365 (35%), Gaps = 66/365 (18%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           ++  L  L  L  L LS N    + +      L                    L    RL
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------------LDPQCRL 144

Query: 164 QFLDLSFNNL--FSGENL-DWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL-----HSLT 215
           + L L + +L   S E L   L        L +  ND++     V++L +        L 
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLE 202

Query: 216 TLSLYSCDLPPIIPSSLLN-LNSSNSLEVIDLTENNLTNS----VYPWLFNVSSSLVDRI 270
            L L SC +       L   + S  SL  + L  N L +     + P L + SS L   +
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL-RTL 261

Query: 271 SLPSNQLQ----GSIPEAFGRMVSLRYLDLSSNELR--GIPKFLGNM-----CGLKILYL 319
            +    +     G +        SL+ L L+ NEL   G  + L        C L+ L++
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWV 320

Query: 320 SGKELKGQLSEFIQDLSSGCTKN-SLEWLHLSSNEITGS-MPNLGEF-----SSLKQLNL 372
                    +      SS   +N  L  L +S+N +  + +  L +      S L+ L L
Sbjct: 321 KSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 373 ENNLLNGTIHKSIGQLFK----LEMLKLNGNSLG--GV--ISEALFSNLSRLAALDLADN 424
            +  ++ +   S+         L  L L+ N LG  G+  + E++      L  L L D 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 425 SLTLE 429
             + E
Sbjct: 438 YWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 74/388 (19%), Positives = 122/388 (31%), Gaps = 75/388 (19%)

Query: 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLS----SAEFAGPIPHQLGNLSRLQFLD 167
             +  LD+     S +   E L  L +   + L     +      I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 168 LSFNNL-----------------------FSGENL---------DWLSHLSSLIYLYLDL 195
           L  N L                            L           L  L +L  L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 196 NDLSNFSNWVQLLSKLH-----SLTTLSLYSCDLPPIIPSSLLN-LNSSNSLEVIDLTEN 249
           N L +    +QLL +        L  L L  C L       L + L +    + + ++ N
Sbjct: 123 NLLGDAG--LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 250 NLTNSVYPWL---FNVSSSLVDRISLPSNQLQ----GSIPEAFGRMVSLRYLDLSSNELR 302
           ++  +    L      S   ++ + L S  +       +        SLR L L SN+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 303 G------IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN-SLEWLHLSSNEIT 355
                   P  L     L+ L++    +    ++   DL        SL+ L L+ NE+ 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 356 GS-MPNLGEF-----SSLKQLNLENNLLNGTIHKSIGQLFK----LEMLKLNGNSLG--G 403
                 L E        L+ L +++             +      L  L+++ N L   G
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 404 V--ISEALFSNLSRLAALDLADNSLTLE 429
           V  + + L    S L  L LAD  ++  
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 8e-12
 Identities = 86/503 (17%), Positives = 149/503 (29%), Gaps = 137/503 (27%)

Query: 238 SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ----GSIPEAFGRMVSLRY 293
           S  ++ +D+    L+++ +  L  +       + L    L       I  A     +L  
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQ-VVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 294 LDLSSNEL--RGIPKFLGNM-----CGLKILYLSGKELKGQLSEFIQDLSSGCTKN-SLE 345
           L+L SNEL   G+   +        C ++ L L    L          LSS      +L+
Sbjct: 61  LNLRSNELGDVGV-HCVLQGLQTPSCKIQKLSLQNCCLT---GAGCGVLSSTLRTLPTLQ 116

Query: 346 WLHLSSNEITGS-MPNLGEF-----SSLKQLNLENNLLNGTIHKSIGQLFK----LEMLK 395
            LHLS N +  + +  L E        L++L LE   L+    + +  + +     + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFP 455
           ++ N +       L           L D+   LE             + L  C +     
Sbjct: 177 VSNNDINEAGVRVL--------CQGLKDSPCQLE------------ALKLESCGVTSDNC 216

Query: 456 KWLQ---TQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEG 512
           + L               L      L L SN+             +   G+         
Sbjct: 217 RDLCGIVASKAS------LRE----LALGSNK-------------LGDVGMAELCPGLLH 253

Query: 513 PIPPLPSNATSLNLSKNKFS----GSISFLCSLSNRLIYLDLSNNLLSG----------K 558
           P   L     +L + +   +    G +  +      L  L L+ N L             
Sbjct: 254 PSSRL----RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309

Query: 559 LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDL 618
            P C      L  L + + +F      +     +  S+   NR           +  L +
Sbjct: 310 EPGC-----QLESLWVKSCSF------TAACCSHFSSVLAQNRF----------LLELQI 348

Query: 619 SSNKLG-GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF----FG 673
           S+N+L   GV          +   L +                L  L L+          
Sbjct: 349 SNNRLEDAGVR--------ELCQGLGQPG------------SVLRVLWLADCDVSDSSCS 388

Query: 674 GIPSSLSQLSGLSVMDLSYNNLS 696
            + ++L     L  +DLS N L 
Sbjct: 389 SLAATLLANHSLRELDLSNNCLG 411

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 9e-20
 Identities = 62/340 (18%), Positives = 113/340 (33%), Gaps = 68/340 (20%)

Query: 103 KITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKL--SYLGLSSAEFAGPIPHQLGNL 160
           +I P           +L + + + +     L S+ ++  +   + S +        +  L
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-------IQYL 64

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
             +  L L+ N L    ++  L++L +L +L+LD N + + S+    L  L  L +LSL 
Sbjct: 65  PNVTKLFLNGNKL---TDIKPLTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLE 117

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              +     S +  L     LE + L  N +T+                           
Sbjct: 118 HNGI-----SDINGLVHLPQLESLYLGNNKITD--------------------------- 145

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT 340
                 R+  L  L L  N++  I   L  +  L+ LYLS           I DL +   
Sbjct: 146 -ITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH--------ISDLRALAG 195

Query: 341 KNSLEWLHLSSNEITGSMPNLGEFSSLKQLN-LENNLLNGTIHKSIGQLFKLEMLKLNGN 399
             +L+ L L S E      N    S+L   N ++N   +    + I      E   +  +
Sbjct: 196 LKNLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

Query: 400 SLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ 439
                      + +S +    +        F      P +
Sbjct: 254 LPE------FTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 1e-19
 Identities = 45/332 (13%), Positives = 98/332 (29%), Gaps = 53/332 (15%)

Query: 133 LGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192
             +  +     L        +      L+ +  +  + +++   +++  + +L ++  L+
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLF 71

Query: 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252
           L+ N L++       L+ L +L  L L    +       L +L     L+ + L  N ++
Sbjct: 72  LNGNKLTDIKP----LTNLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNGIS 122

Query: 253 NSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMC 312
           +                                  +  L  L L +N++  I   L  + 
Sbjct: 123 D----------------------------INGLVHLPQLESLYLGNNKITDIT-VLSRLT 153

Query: 313 GLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNL 372
            L  L L   +        I D+        L+ L+LS N I+  +  L    +L  L L
Sbjct: 154 KLDTLSLEDNQ--------ISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL 204

Query: 373 ENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL-DLADNSLTLEFS 431
            +             L     +K    SL      +   +  +      L + +  + F 
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 432 HDWIPPFQLNTISLGHCKMGPRFPKWLQTQNT 463
                               P    +  + + 
Sbjct: 265 FYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 8e-12
 Identities = 49/300 (16%), Positives = 88/300 (29%), Gaps = 78/300 (26%)

Query: 287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346
                   +L    +         +  +  +  +  +        I+ +       ++  
Sbjct: 19  AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSD--------IKSVQGIQYLPNVTK 69

Query: 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
           L L+ N++T  +  L    +L  L L+ N +   +  S+  L KL+ L L  N +  +  
Sbjct: 70  LFLNGNKLT-DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDING 126

Query: 407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPN 466
                +L +L +L L +N +T       I      T                        
Sbjct: 127 ---LVHLPQLESLYLGNNKITD------ITVLSRLT------------------------ 153

Query: 467 WFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL 526
               L      L+L  NQ+                  DI       P+  L     +L L
Sbjct: 154 ---KLDT----LSLEDNQIS-----------------DIV------PLAGLT-KLQNLYL 182

Query: 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS 586
           SKN  S  +  L  L N L  L+L +     K  +          +   + +       S
Sbjct: 183 SKNHIS-DLRALAGLKN-LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 21/210 (10%)

Query: 514 IPPLPS--NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVI 571
           I P  +       NL K   +        L++ +  +  +N+ +   +        ++  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVT-DAVTQNELNS-IDQIIANNSDIK-SVQGIQ-YLPNVTK 69

Query: 572 LNLANNNFFGKIPNSMGFLHNIRSLSL-YNR-SQYEYKSTLGLVKILDLSSNKLGGGVPK 629
           L L  N     I   +  L N+  L L  N+         L  +K L L  N +      
Sbjct: 70  LFLNGNKL-TDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS--DIN 125

Query: 630 EIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP--SSLSQLSGLSV 687
            ++ L  L +L L  N +T  IT  + +L  LD L L  NQ    I     L+ L+ L  
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQN 179

Query: 688 MDLSYNNLSGKIPLGTQLQSFNELVYAGNP 717
           + LS N++S    L   L++ + L      
Sbjct: 180 LYLSKNHISDLRAL-AGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 15/197 (7%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
                        I    + +   I  +L    ++  +     + +S+  +   N++   
Sbjct: 2   GETITVSTPIK-QIFPDDAFAE-TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI-K 56

Query: 582 KIPNSMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA 639
            +   + +L N+  L L     +  +  + L  +  L L  NK+       + DL  L +
Sbjct: 57  SVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 640 LNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI 699
           L+L  N ++  I   +  L  L+ L L  N+      + LS+L+ L  + L  N +S  I
Sbjct: 114 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 168

Query: 700 PLGTQLQSFNELVYAGN 716
                L     L  + N
Sbjct: 169 VPLAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 54/315 (17%), Positives = 98/315 (31%), Gaps = 90/315 (28%)

Query: 291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
           +      S  ++ I              L  K         + D  +    NS++ +  +
Sbjct: 1   MGETITVSTPIKQIFP-DDAFAETIKDNLKKKS--------VTDAVTQNELNSIDQIIAN 51

Query: 351 SNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF 410
           +++I  S+  +    ++ +L L  N L     K +  L  L  L L+ N +  + S    
Sbjct: 52  NSDIK-SVQGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS---L 105

Query: 411 SNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD 470
            +L +L +L L  N ++       I                      L++          
Sbjct: 106 KDLKKLKSLSLEHNGISD------INGLVHLP--------------QLES---------- 135

Query: 471 LTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNK 530
                  L L +N+             I+    DI+       +  L     +L+L  N+
Sbjct: 136 -------LYLGNNK-------------IT----DIT------VLSRLT-KLDTLSLEDNQ 164

Query: 531 FSGSISFLCSLSNRLIYLDLSNNLLS-----GKLPDCWFQFDSLVILNLANNNFFGKIPN 585
            S  I  L  L+  L  L LS N +S       L        +L +L L +     K  N
Sbjct: 165 IS-DIVPLAGLTK-LQNLYLSKNHISDLRALAGLK-------NLDVLELFSQECLNKPIN 215

Query: 586 SMGFLHNIRSLSLYN 600
               L    ++   +
Sbjct: 216 HQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 12/161 (7%)

Query: 103 KIT--PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNL 160
           KIT    L +L  L  L L  N    S I   L  L KL  L LS    +      L  L
Sbjct: 142 KITDITVLSRLTKLDTLSLEDNQI--SDI-VPLAGLTKLQNLYLSKNHISDLRA--LAGL 196

Query: 161 SRLQFLDLSFNNLFS-----GENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLT 215
             L  L+L      +       NL   + + +     +    +S+  ++ +   K H   
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

Query: 216 TLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVY 256
             +  S      +            +         ++  V 
Sbjct: 257 FTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 8e-19
 Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 11/210 (5%)

Query: 114 LTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
              + L  N  S   +P     +   L+ L L S   A         L+ L+ LDLS N 
Sbjct: 34  SQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
                +      L  L  L+LD   L        L   L +L  L L    L  +   + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
            +L    +L  + L  N ++ SV    F    SL  R+ L  N++    P AF  +  L 
Sbjct: 150 RDL---GNLTHLFLHGNRIS-SVPERAFRGLHSLD-RLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 293 YLDLSSNELRGIPK-FLGNMCGLKILYLSG 321
            L L +N L  +P   L  +  L+ L L+ 
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIP-HQLGNLSRLQ 164
           +    ++LT L L  N  +   I       L  L  L LS       +       L RL 
Sbjct: 51  SFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L L    L           L++L YLYL  N L    +       L +LT L L+   +
Sbjct: 109 TLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRI 165

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
             +   +   L+S   L+ + L +N +   V+P  F     L   + L +N L     EA
Sbjct: 166 SSVPERAFRGLHS---LDRLLLHQNRVA-HVHPHAFRDLGRL-MTLYLFANNLSALPTEA 220

Query: 285 FGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320
              + +L+YL L+ N            C  +   L 
Sbjct: 221 LAPLRALQYLRLNDNPWV---------CDCRARPLW 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 18/227 (7%)

Query: 514 IPP-LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVI 571
           +P  +P+ +  + L  N+ S   +        L  L L +N+L+ ++    F     L  
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQ 84

Query: 572 LNLANNNFFGKIPNSM-GFLHNIRSLSL-YNRSQYEYKSTL-GLVK--ILDLSSNKLGGG 626
           L+L++N     +  +    L  + +L L     Q        GL     L L  N L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QA 143

Query: 627 VPKEI-MDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSG 684
           +P +   DL  L  L L  N ++  +  +    L SLD L L +N+     P +   L  
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 685 LSVMDLSYNNLSGKIPLG--TQLQSFNELVYAGNPELCG---LPLRN 726
           L  + L  NNLS  +P      L++   L    NP +C     PL  
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 41/219 (18%)

Query: 280 SIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
           ++P       + + + L  N +  +P         L IL+L            +  + + 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--------LARIDAA 74

Query: 339 CTKN--SLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSI-GQLFKLEM 393
                  LE L LS N    S+          L  L+L+   L   +   +   L  L+ 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY 133

Query: 394 LKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF------QLNTISLGH 447
           L L  N+L   + +  F +L  L  L L  N ++       +P         L+ + L  
Sbjct: 134 LYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS------SVPERAFRGLHSLDRLLLHQ 186

Query: 448 CKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMR 486
            ++       +      P+ F DL      L L +N + 
Sbjct: 187 NRV-----AHVH-----PHAFRDLGRLMT-LYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 51/263 (19%), Positives = 81/263 (30%), Gaps = 66/263 (25%)

Query: 343 SLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSI-GQLFKLEMLKLNGNS 400
           + + + L  N I+           +L  L L +N+L   I  +    L  LE L L+ N+
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 401 LGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQT 460
               +  A F  L RL  L L    L                +                 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ--------------ELG---------------- 121

Query: 461 QNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSN 520
               P  F  L   +  L L  N ++                  +  + F         N
Sbjct: 122 ----PGLFRGLAALQY-LYLQDNALQ-----------------ALPDDTFRD-----LGN 154

Query: 521 ATSLNLSKNKFSGSIS--FLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANN 577
            T L L  N+ S S+       L + L  L L  N ++  +    F+    L+ L L  N
Sbjct: 155 LTHLFLHGNRIS-SVPERAFRGLHS-LDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

Query: 578 NFFGKIPNSMGFLHNIRSLSLYN 600
           N       ++  L  ++ L L +
Sbjct: 212 NLSALPTEALAPLRALQYLRLND 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 62/324 (19%), Positives = 115/324 (35%), Gaps = 48/324 (14%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
           +L  LT LD   ++   + +      L  L+ L  +S      +   L   + L +L   
Sbjct: 40  QLATLTSLDCHNSSI--TDMTGI-EKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACD 93

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229
            N L    NLD ++ L+ L YL  D N L+        +S+   LT L+     L     
Sbjct: 94  SNKL---TNLD-VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL----- 139

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
            + ++++ +  L  +D   N         L     + +  +    N++   +     +  
Sbjct: 140 -TEIDVSHNTQLTELDCHLNKKITK----LDVTPQTQLTTLDCSFNKIT-ELD--VSQNK 191

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
            L  L+  +N +  +   L     L  L  S      +L+E   D++       L +   
Sbjct: 192 LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN----KLTEI--DVTPL---TQLTYFDC 240

Query: 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL 409
           S N +T    ++   S L  L+     L       +    +L   +  G      I E  
Sbjct: 241 SVNPLT--ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRK---IKELD 292

Query: 410 FSNLSRLAALDLADNSLT-LEFSH 432
            ++ ++L  LD     +T L+ S 
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQ 316

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 52/323 (16%), Positives = 100/323 (30%), Gaps = 53/323 (16%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLD 167
           +  L  LTYL+   N  +   +         L+YL  +           + + ++L  LD
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDV----SQNPLLTYLNCARNTLT---EIDVSHNTQLTELD 154

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
              N   +      ++  + L  L    N ++        +S+   L  L+  + ++   
Sbjct: 155 CHLNKKIT---KLDVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNI--- 203

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS-SLVDRISLPSNQLQGSIPEAFG 286
              + L+LN +  L  +D + N LT        +V+  + +       N L   +     
Sbjct: 204 ---TKLDLNQNIQLTFLDCSSNKLTE------IDVTPLTQLTYFDCSVNPLT-ELD--VS 251

Query: 287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--SL 344
            +  L  L     +L  I   L +   L      G           + +      +   L
Sbjct: 252 TLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEG----------CRKIKELDVTHNTQL 299

Query: 345 EWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV 404
             L   +  IT    +L +   L  L L N  L   +   +    KL+ L      +   
Sbjct: 300 YLLDCQAAGIT--ELDLSQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQDF 354

Query: 405 ISEALFSNLSRLAALDLADNSLT 427
              +    +  L     A+    
Sbjct: 355 ---SSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 80/473 (16%), Positives = 144/473 (30%), Gaps = 97/473 (20%)

Query: 157 LGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTT 216
              L+ L  LD   +++    ++  +  L+ L  L    N+++        LS+  +LT 
Sbjct: 38  EEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTY 89

Query: 217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ 276
           L+  S  L      + L++     L  ++   N LT         ++      ++   N 
Sbjct: 90  LACDSNKL------TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY-----LNCARNT 138

Query: 277 LQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336
           L   I         L  LD   N+             L  L  S  ++         +L 
Sbjct: 139 LT-EID--VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKIT--------ELD 186

Query: 337 -SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
            S      L  L+  +N IT    +L +   L  L+  +N L   I   +  L +L    
Sbjct: 187 VSQNKL--LNRLNCDTNNIT--KLDLNQNIQLTFLDCSSNKLT-EI--DVTPLTQLTYFD 239

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLT-LEFSHDWIPPFQLNTISLGHCKMGPRF 454
            + N L  +      S LS+L  L      L  ++ +H      QL       C+     
Sbjct: 240 CSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTH----NTQLIYFQAEGCRKIK-- 289

Query: 455 PKWLQTQNTVPNWFWDLTHQRML--LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEG 512
                          D+TH   L  L+  +  +                 +D+S N    
Sbjct: 290 -------------ELDVTHNTQLYLLDCQAAGIT---------------ELDLSQN---- 317

Query: 513 PIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572
                      L L+  + +  +    S + +L  L   N  +         +  +L   
Sbjct: 318 ------PKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQ-DFSSV-GKIPALNNN 366

Query: 573 NLANNNF--FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKL 623
             A        K   +   L    S  L ++         G   + D ++N +
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.4 bits (191), Expect = 4e-15
 Identities = 72/472 (15%), Positives = 144/472 (30%), Gaps = 85/472 (18%)

Query: 274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQ 333
           + ++Q +   +  ++ +L  LD  ++ +  +   +  + GL  L  +   +         
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-------- 77

Query: 334 DLS-SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE 392
            L  S  T   L +L   SN++T    ++   + L  LN + N L       + Q   L 
Sbjct: 78  TLDLSQNTN--LTYLACDSNKLTN--LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLT 130

Query: 393 MLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGP 452
            L    N+    ++E   S+ ++L  LD   N               +  + +       
Sbjct: 131 YLNCARNT----LTEIDVSHNTQLTELDCHLNKK-------------ITKLDVTPQT--- 170

Query: 453 RFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEG 512
                             LT     L+ S N++     +L +  +     ++  +N+   
Sbjct: 171 -----------------QLTT----LDCSFNKIT----ELDVSQNKLLNRLNCDTNNITK 205

Query: 513 PIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572
                    T L+ S NK +  I     L+  L Y D S N L+ +L         L  L
Sbjct: 206 LDLNQNIQLTFLDCSSNKLT-EIDV-TPLTQ-LTYFDCSVNPLT-ELDVS--TLSKLTTL 259

Query: 573 NLANNNFFGKIPNSMGFLHNIRSLSLY----NRSQYEYKSTLGLVKILDLSSNKLGGGVP 628
           +    +        +   HN + +        + +    +    + +LD  +  +     
Sbjct: 260 HCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI---TE 311

Query: 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVM 688
            ++     LV L L+   LT      +     L  L             S+ ++  L+  
Sbjct: 312 LDLSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNN 366

Query: 689 DLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDEDSAPSPERD 740
             +               S    V     +  G P+  +  D          
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 54/273 (19%), Positives = 96/273 (35%), Gaps = 40/273 (14%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             +     LT LD S N  +   +         L+ L   +      +   L    +L F
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDV----SQNKLLNRLNCDTNNITK-LD--LNQNIQLTF 216

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LD S N L     +D ++ L+ L Y    +N L+        +S L  LTTL     DL 
Sbjct: 217 LDCSSNKL---TEID-VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLL 267

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            I  +    L    +     + E ++T+         ++ L   +   +  +   +    
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVTH---------NTQLYL-LDCQAAGIT-ELD--L 314

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
            +   L YL L++ EL  +   + +   LK L              IQD SS     +L 
Sbjct: 315 SQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH--------IQDFSSVGKIPALN 364

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN 378
               +  +   +MP     ++   + +  +LL+
Sbjct: 365 NNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 74/534 (13%), Positives = 161/534 (30%), Gaps = 145/534 (27%)

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226
             SFN+ F  +N       +S +    ++      S       +L +LT+L  ++  +  
Sbjct: 8   TQSFNDWFPDDNF------ASEVAAAFEMQATDTIS-----EEQLATLTSLDCHNSSI-- 54

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS-SLVDRISLPSNQLQGSIPEAF 285
              + +  +     L  +  T NN+T        ++S  + +  ++  SN+L  ++    
Sbjct: 55  ---TDMTGIEKLTGLTKLICTSNNITT------LDLSQNTNLTYLACDSNKLT-NLD--V 102

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
             +  L YL+  +N+L  +   +     L  L  +   L         ++        L 
Sbjct: 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT--------EIDVSHNTQ-LT 151

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
            L    N+   +  ++   + L  L+   N +       + Q   L  L  + N+    I
Sbjct: 152 ELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNN----I 203

Query: 406 SEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP 465
           ++   +   +L  LD + N              +L  I +            L       
Sbjct: 204 TKLDLNQNIQLTFLDCSSN--------------KLTEIDVTPLTQ-------LTY----- 237

Query: 466 NWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN 525
                        + S N +     +L +        +                    ++
Sbjct: 238 ------------FDCSVNPLT----ELDVSTLSKLTTLHCIQTDL-----------LEID 270

Query: 526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN 585
           L+ N  +  I F      ++  LD+++N               L +L+            
Sbjct: 271 LTHN--TQLIYFQAEGCRKIKELDVTHNT-------------QLYLLDCQAAG------- 308

Query: 586 SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI--MDLVGLVALNLS 643
                  I  L L         S    +  L L++ +L      E+       L +L+  
Sbjct: 309 -------ITELDL---------SQNPKLVYLYLNNTEL-----TELDVSHNTKLKSLSCV 347

Query: 644 RNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
             ++       +G++ +L+    +  Q       +L+  S    +     +  G
Sbjct: 348 NAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 19/164 (11%), Positives = 46/164 (28%), Gaps = 10/164 (6%)

Query: 105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
              +     L  LD      +   +   L    KL YL L++ E    +   + + ++L+
Sbjct: 290 ELDVTHNTQLYLLDCQAAGIT--ELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKLK 342

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L     ++   ++   +  + +L   +                + L    +  L     
Sbjct: 343 SLSCVNAHI---QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268
            P+            +   I     +  N    + F   +  + 
Sbjct: 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIV 443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 5e-18
 Identities = 56/317 (17%), Positives = 110/317 (34%), Gaps = 65/317 (20%)

Query: 362 GEFSSLKQLNLENNLLN--GTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
               SL Q +  N +         +  +  K  +   N N    ++ E L +  S L   
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL--- 64

Query: 420 DLADNSLTLEFSHDWIPPF---QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRM 476
            L   +L+       +P     Q+  + +    +            ++P     L +   
Sbjct: 65  QLNRLNLSS------LPDNLPPQITVLEITQNALI-----------SLPELPASLEY--- 104

Query: 477 LLNLSSNQMRGKVPDL--SLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGS 534
            L+   N++   +P+L  SL+       +D+ +N     +P LP+    +N   N+    
Sbjct: 105 -LDACDNRLS-TLPELPASLK------HLDVDNNQLTM-LPELPALLEYINADNNQ---- 151

Query: 535 ISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
           ++ L  L   L  L + NN L+  LP+     +SL  L++ + N    +P      H+  
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLT-FLPE---LPESLEALDV-STNLLESLPAVPVRNHHSE 206

Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
              ++                     N++   +P+ I+ L     + L  N L+ +I   
Sbjct: 207 ETEIF----------------FRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 655 IGQLKSLDFLDLSRNQF 671
           + Q  +       R  F
Sbjct: 250 LSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 54/296 (18%), Positives = 94/296 (31%), Gaps = 82/296 (27%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
                +   + L L+R N   SS+P+ L    +++ L ++       +P    +   L++
Sbjct: 53  LKECLINQFSELQLNRLNL--SSLPDNLPP--QITVLEITQNAL-ISLPELPAS---LEY 104

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
           LD   N L     L      +SL +L +D N L+                        LP
Sbjct: 105 LDACDNRL---STLP--ELPASLKHLDVDNNQLTM-----------------------LP 136

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285
            +             LE I+   N LT                            +PE  
Sbjct: 137 ELP----------ALLEYINADNNQLT---------------------------MLPELP 159

Query: 286 GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
               SL  L + +N+L  +P+   +   L+ L +S   L+  L           ++ +  
Sbjct: 160 T---SLEVLSVRNNQLTFLPELPES---LEALDVSTNLLE-SLPAVPVRNHH--SEETEI 210

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
           +     N IT    N+        + LE+N L+  I +S+ Q              
Sbjct: 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 75/448 (16%), Positives = 141/448 (31%), Gaps = 60/448 (13%)

Query: 235 LNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV--DRISLPSNQLQGSIPEAFGRMVSLR 292
           L  +N+  +   +  N  +  Y   F+               N+    + E    +    
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFS 62

Query: 293 YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN 352
            L L+   L  +P  L     + +L ++   L   L E            SLE+L    N
Sbjct: 63  ELQLNRLNLSSLPDNLPP--QITVLEITQNALI-SLPELP---------ASLEYLDACDN 110

Query: 353 EITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSN 412
            ++ ++P     +SLK L+++NN L   + +       LE +  + N L       L   
Sbjct: 111 RLS-TLPE--LPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQL-----TMLPEL 158

Query: 413 LSRLAALDLADNSLTLEFSHDWIP--PFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD 470
            + L  L + +N LT       +P  P  L  + +    +            ++P     
Sbjct: 159 PTSLEVLSVRNNQLTF------LPELPESLEALDVSTNLL-----------ESLPAVPVR 201

Query: 471 LTHQRML---LNLSSNQMRGKVPD--LSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN 525
             H            N++   +P+  LSL    +   I +  N     I    S  T+  
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCT---IILEDNPLSSRIRESLSQQTAQP 257

Query: 526 L--SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583
                  +        +  +R +   ++      K  D    + +    +  + N F   
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF--EHEEHANTFSAF 315

Query: 584 PNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLS 643
            + +    + R+ S +      +   L     L   S  +     +   D V L   NL 
Sbjct: 316 LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLR 375

Query: 644 RNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           +  L  Q +  +    +   L L R  F
Sbjct: 376 KTLLVHQASEGLFDNDTGALLSLGREMF 403

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 27/262 (10%)

Query: 469 WDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP-LPSNATSLNLS 527
           WD   ++ L   + N+    + +  +        + ++  +    +P  LP   T L ++
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLSS-LPDNLPPQITVLEIT 88

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM 587
           +N      S     ++ L YLD  +N LS  LP+      SL  L++ NN     +P   
Sbjct: 89  QNALI---SLPELPAS-LEYLDACDNRLS-TLPE---LPASLKHLDVDNNQL-TMLPELP 139

Query: 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL 647
             L     ++  N            +++L + +N+L   +P+       L AL++S N L
Sbjct: 140 ALL---EYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPEL---PESLEALDVSTNLL 192

Query: 648 TGQITPKIGQLKSL----DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT 703
              +     +         F     N+    IP ++  L     + L  N LS +I    
Sbjct: 193 E-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 704 QLQSFNELVYAGNPELCGLPLR 725
             Q+     +           +
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQ 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 8e-18
 Identities = 52/279 (18%), Positives = 77/279 (27%), Gaps = 43/279 (15%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLG--KLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           ++K   L  L +         +   L  LG   L  L L + E  G  P  L   +    
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225
             L+  N+       WL+ L   +                        L  LS+      
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWL---------------------KPGLKVLSIAQAHSL 162

Query: 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL-----PSNQLQGS 280
                 +       +L  +DL++N                      L           G 
Sbjct: 163 NFSCEQVRVF---PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLG--NMCGLKILYLSGKELKGQLSEFIQDLSSG 338
                   V L+ LDLS N LR             L  L LS       L +  + L + 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT----GLKQVPKGLPA- 274

Query: 339 CTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLL 377
                L  L LS N +    P+  E   +  L+L+ N  
Sbjct: 275 ----KLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 13/222 (5%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFL-GSLGKLSYLGLSSAEFAGPIPH----QLGNLS 161
            +L +  L  L L     +G++ P  L  +   L+ L L +  +A         Q     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLL--SKLHSLTTLSL 219
            L+ L ++  +  +  + + +    +L  L L  N        +  L   K  +L  L+L
Sbjct: 150 GLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 220 YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG 279
            +  +            +   L+ +DL+ N+L ++      +  S L   ++L    L+ 
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN-SLNLSFTGLK- 266

Query: 280 SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSG 321
            +P+       L  LDLS N L   P     +  +  L L G
Sbjct: 267 QVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 44/282 (15%)

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
           N S  +    S  N     +++      SL YL   ++  ++   +  ++  L SL  L+
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLT 74

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
           + +  +P  I    L +   + L+ + L    +T +  P L   +               
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP------------- 121

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMC-----GLKILYLSGKELKGQLSEFIQ 333
                       L  L+L +        +L  +      GLK+L ++         E ++
Sbjct: 122 -----------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170

Query: 334 DLSSGCTKNSLEWLHLSSNEITG-----SMPNLGEFSSLKQLNLENNLLN---GTIHKSI 385
              +      L  L LS N   G     S     +F +L+ L L N  +    G      
Sbjct: 171 VFPA------LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 386 GQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
               +L+ L L+ NSL            S+L +L+L+   L 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 57/305 (18%), Positives = 88/305 (28%), Gaps = 29/305 (9%)

Query: 399 NSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM-GPRFPKW 457
           N LG    E      S    L   D    L    D I    L  +++   ++        
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 458 LQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL 517
           L+           L +  +        +    PDL++  ++                  L
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWLAELQQWL 147

Query: 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP----DCWFQFDSLVILN 573
                 L++++            +   L  LDLS+N   G+       C  +F +L +L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD 633
           L N                   L                 + LDLS N L         D
Sbjct: 208 LRNAGMETPSGVCSALAAARVQL-----------------QGLDLSHNSLRDAAGAPSCD 250

Query: 634 LVG-LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692
               L +LNLS   L  Q+   +     L  LDLS N+     PS   +L  +  + L  
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKG 305

Query: 693 NNLSG 697
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 7e-13
 Identities = 50/227 (22%), Positives = 76/227 (33%), Gaps = 33/227 (14%)

Query: 504 DISSNHFEGPIPPLPSNAT-----SLNLSKNKFSGSISFLCSLSN----RLIYLDLSNNL 554
            + +    G  PP    AT      LNL    ++   ++L  L       L  L ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 555 LSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVK 614
                 +    F +L  L+L++N   G+               L +        TL ++ 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG-------------LISALCPLKFPTLQVLA 207

Query: 615 ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ-LKSLDFLDLSRNQF-- 671
           + +       G         V L  L+LS N+L              L+ L+LS      
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 672 -FGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNP 717
              G+P+ LS L      DLSYN L    P   +L     L   GNP
Sbjct: 268 VPKGLPAKLSVL------DLSYNRLDR-NPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 56/290 (19%), Positives = 93/290 (32%), Gaps = 31/290 (10%)

Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
           E +G   SL YL    +    + +F   +  L +  L+ +  +   S  +         +
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIP-SRILFGALRVLGIS 95

Query: 343 SLEWLHLSSNEITGSMPN---LGEFSSLKQLNLENNLLNGTIHKSIGQLF-----KLEML 394
            L+ L L + E+TG+ P          L  LNL N          + +L       L++L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVL 154

Query: 395 KLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISLGHCKM 450
            +         S         L+ LDL+DN    E              L  ++L +  M
Sbjct: 155 SIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQR---MLLNLSSNQMRGKVPDLSLRFDISGPGIDISS 507
                       T       L   R     L+LS N +R      S  +      +++S 
Sbjct: 214 -----------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 508 NHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG 557
              +     LP+  + L+LS N+          L   +  L L  N    
Sbjct: 263 TGLKQVPKGLPAKLSVLDLSYNRLD-RNPSPDELPQ-VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 21/177 (11%)

Query: 84  HVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSG------SSIPEFLGSLG 137
            +  L +      +F         +     L+ LDLS N   G      +  P    +L 
Sbjct: 150 GLKVLSIAQAHSLNFSC-----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND 197
            L+         +G          +LQ LDLS N+L            S L  L L    
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 198 LSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNS 254
           L      +        L+ L L    L         + +    +  + L  N   +S
Sbjct: 265 LKQVPKGL-----PAKLSVLDLSYNRL-----DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 24/214 (11%)

Query: 502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSL---SNRLIYLDLSNNLLSGK 558
            +D  ++  +        +   L +   +    I F        + L  L L N  ++G 
Sbjct: 51  RVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110

Query: 559 LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDL 618
            P    +     +  L               L N+   +         +     +K+L +
Sbjct: 111 APPPLLEATGPDLNIL--------------NLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 619 SSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI----GQLKSLDFLDLSRNQF--- 671
           +         +++     L  L+LS N   G+          +  +L  L L        
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 672 FGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQL 705
            G   +  +    L  +DLS+N+L       +  
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 52/298 (17%), Positives = 87/298 (29%), Gaps = 34/298 (11%)

Query: 360 NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEAL--FSNLSRLA 417
             G  S    L   +   +      I +   L+ L +    +   I         +S L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 418 ALDLADNSLTLEFSHDWIPPF--QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQR 475
            L L +  +T       +      LN ++L +     R     + Q  +      L+  +
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 476 MLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKF---S 532
                 S +     P LS   D+S               P        L L        S
Sbjct: 159 AHSLNFSCEQVRVFPALS-TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSLVILNLANNNFFGKIPNSMGFLH 591
           G  S L +   +L  LDLS+N L          +   L  LNL+                
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG------------- 264

Query: 592 NIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG 649
            ++ +     ++         + +LDLS N+L         +L  +  L+L  N    
Sbjct: 265 -LKQVPKGLPAK---------LSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 46/273 (16%), Positives = 99/273 (36%), Gaps = 33/273 (12%)

Query: 157 LGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTT 216
               +     +L   ++    +    + L+S+  +  + +D+ +       +  L ++T 
Sbjct: 20  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 72

Query: 217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS-SLVDRISLPSN 275
           L L    L     + +  L +  +L  + L EN + +     L ++     +  +SL  N
Sbjct: 73  LFLNGNKL-----TDIKPLANLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSLEHN 122

Query: 276 QLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDL 335
            +  S       +  L  L L +N++  I   L  +  L  L L   +        I D+
Sbjct: 123 GI--SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--------ISDI 171

Query: 336 SSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
                   L+ L+LS N I+  +  L    +L  L L +      ++K I     L +  
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQEC---LNKPINHQSNLVVPN 227

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428
              N+ G +++  + S+       ++  +    
Sbjct: 228 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 56/271 (20%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLD 167
                     +L + + +          L  +  +  ++++        +  L  +  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
           L+ N L    ++  L++L +L +L+LD N + + S+    L  L  L +LSL    +   
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGI--- 124

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
             S +  L     LE + L  N +T+                                 R
Sbjct: 125 --SDINGLVHLPQLESLYLGNNKITD----------------------------ITVLSR 154

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           +  L  L L  N++  I   L  +  L+ LYLS           I DL +     +L+ L
Sbjct: 155 LTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH--------ISDLRALAGLKNLDVL 205

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLN 378
            L S E       +   S+L   N   N   
Sbjct: 206 ELFSQECL--NKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 22/181 (12%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
             +  + +    S+  +  L N +  L L+ N L+   P       +L  L L  N    
Sbjct: 49  DQIIANNSDIK-SVQGIQYLPN-VTKLFLNGNKLTDIKPLA--NLKNLGWLFLDEN---- 100

Query: 582 KIPNSMGF--LHNIRSLSL-YNR-SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGL 637
           K+ +      L  ++SLSL +N  S       L  ++ L L +NK+       +  L  L
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKL 158

Query: 638 VALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP--SSLSQLSGLSVMDLSYNNL 695
             L+L  N ++  I P +  L  L  L LS+N     I    +L+ L  L V++L     
Sbjct: 159 DTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQEC 212

Query: 696 S 696
            
Sbjct: 213 L 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 14/184 (7%)

Query: 535 ISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
           I    + +   I  +L    ++        + +S+  +   N++    +   + +L N+ 
Sbjct: 17  IFSDDAFAE-TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVT 71

Query: 595 SLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT 652
            L L     +  +  + L  +  L L  NK+       + DL  L +L+L  N ++  I 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN 128

Query: 653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELV 712
             +  L  L+ L L  N+      + LS+L+ L  + L  N +S  I     L     L 
Sbjct: 129 G-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLY 184

Query: 713 YAGN 716
            + N
Sbjct: 185 LSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 16/180 (8%)

Query: 520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS--GKLPDCWFQFDSLVILNLANN 577
           N T L L+ NK +  I  L +L N L +L L  N +     L D       L  L+L +N
Sbjct: 69  NVTKLFLNGNKLT-DIKPLANLKN-LGWLFLDENKVKDLSSLKDL----KKLKSLSLEHN 122

Query: 578 NFFGKIPNSMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV 635
                I   +  L  + SL L N   +     S L  +  L L  N++   VP  +  L 
Sbjct: 123 GI-SDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178

Query: 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
            L  L LS+N+++  +   +  LK+LD L+L   +      +  S L   + +  +  +L
Sbjct: 179 KLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.6 bits (198), Expect = 7e-16
 Identities = 54/333 (16%), Positives = 107/333 (32%), Gaps = 26/333 (7%)

Query: 45  LTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKI 104
           L  +A   D    +   R E     C        S+    +  +D  P+  +     G+ 
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
            P+ + L  L    L+      +    +           L                 +L 
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWT-GSDSQKECVLLKDRPECW-CRDSATDEQLF 352

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
             +LS       ++   L     L  L  +     N    + ++  + +L  L      L
Sbjct: 353 RCELSVEKSTVLQSE--LESCKELQELEPE-----NKWCLLTIILLMRALDPLLYEKETL 405

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
                     L + + +    L +      +   +  +  + V  + L    L  ++   
Sbjct: 406 -----QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCH 458

Query: 285 FGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSL 344
             +++ + +LDLS N LR +P  L  +  L++L  S   L+  +   + +L        L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG-VANLP------RL 510

Query: 345 EWLHLSSNEITG--SMPNLGEFSSLKQLNLENN 375
           + L L +N +    ++  L     L  LNL+ N
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 3e-12
 Identities = 42/314 (13%), Positives = 77/314 (24%), Gaps = 41/314 (13%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
           L  +            P+       +    L +A     +P     +            L
Sbjct: 274 LLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL 333

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
                  W    ++   L+     +   +     L     L  L   +      I   + 
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY 293
            L+     +      + L                  +    ++              +R 
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRA--------AYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
           L L+  +L  +                           ++ L        +  L LS N 
Sbjct: 446 LHLAHKDLTVL-------------------------CHLEQLLL------VTHLDLSHNR 474

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           +    P L     L+ L   +N L       +  L +L+ L L  N L    +     + 
Sbjct: 475 LRALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 414 SRLAALDLADNSLT 427
            RL  L+L  NSL 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 57/327 (17%), Positives = 96/327 (29%), Gaps = 17/327 (5%)

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN 462
            ++  A   ++     +   +  L++ FS       ++ T+ L   +             
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 463 TVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPS--N 520
             P+  W        LN    Q       +      S     +  +  E       +   
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQH---TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580
                LS  K +   S L S    L  L+  N      +       D L+        F 
Sbjct: 351 LFRCELSVEKSTVLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 581 G-KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA 639
             K  + M   +     S +       K     V++L L+   L   V   +  L+ +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTH 467

Query: 640 LNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN---NLS 696
           L+LS N L   + P +  L+ L+ L  S N         ++ L  L  + L  N     +
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSA 524

Query: 697 GKIPLGTQLQSFNELVYAGNPELCGLP 723
              PL         L   GN  LC   
Sbjct: 525 AIQPLV-SCPRLVLLNLQGNS-LCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS---AEFAGPIPHQLGNLSR 162
             L +L  +T+LDLS N     ++P  L +L  L  L  S        G     + NL R
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-----VANLPR 509

Query: 163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTL 217
           LQ L L  N L     +  L     L+ L L  N L        +L   L S++++
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 40/226 (17%)

Query: 89  DLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE 148
           +LQ +  ++      I   +  L  L Y   +   FS     + +    + +YL    ++
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM----RAAYLDDLRSK 428

Query: 149 FAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLL 208
           F           + ++ L L+  +L     L  L  L  + +L L  N L         L
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPA---L 482

Query: 209 SKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268
           + L  L  L      L      ++  + +   L+ + L  N L  S              
Sbjct: 483 AALRCLEVLQASDNAL-----ENVDGVANLPRLQELLLCNNRLQQS-------------- 523

Query: 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGL 314
                      +  +       L  L+L  N L         +  +
Sbjct: 524 -----------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 30/225 (13%)

Query: 157 LGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTT 216
              L+     +L   ++    +L     LS +     D +++ + +     +    +L  
Sbjct: 15  DPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSLAG----MQFFTNLKE 67

Query: 217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ 276
           L L    +     S L  L     LE + +  N L N     L  + S+ + R+ L +N+
Sbjct: 68  LHLSHNQI-----SDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNE 117

Query: 277 LQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336
           L     ++   + +L  L + +N+L+ I   LG +  L++L L G E        I +  
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE--------ITNTG 166

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTI 381
                  + W+ L+  +       +     L   N   +     I
Sbjct: 167 GLTRLKKVNWIDLTGQKCV--NEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 49/222 (22%)

Query: 208 LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267
              L +    +L    +     + L++    + ++  +   +N+ +              
Sbjct: 15  DPGLANAVKQNLGKQSV-----TDLVSQKELSGVQNFNGDNSNIQS-------------- 55

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ 327
                                 +L+ L LS N++  +   L ++  L+ L ++       
Sbjct: 56  --------------LAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNR---- 96

Query: 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQ 387
               +++L+ G     L  L L +NE+     +L    +L+ L++ NN L       +G 
Sbjct: 97  ----LKNLN-GIPSACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKL--KSIVMLGF 148

Query: 388 LFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE 429
           L KLE+L L+GN +         + L ++  +DL       E
Sbjct: 149 LSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 24/149 (16%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS---AEFAGPIPHQLGNLSRLQ 164
             +L  +   +   +N    S+   +     L  L LS    ++ +      L +L++L+
Sbjct: 37  QKELSGVQNFNGDNSNI--QSL-AGMQFFTNLKELHLSHNQISDLSP-----LKDLTKLE 88

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L ++ N L +   +        L  L+LD N+L +  +    L  L +L  LS+ +  L
Sbjct: 89  ELSVNRNRLKNLNGIPSA----CLSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKL 140

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
                 S++ L   + LEV+DL  N +TN
Sbjct: 141 -----KSIVMLGFLSKLEVLDLHGNEITN 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLD 167
           L  L  L  L ++RN     +          LS L L + E        L +L  L+ L 
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSA----CLSRLFLDNNELRDTDS--LIHLKNLEILS 134

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
           +  N L   +++  L  LS L  L L  N+++N       L++L  +  + L        
Sbjct: 135 IRNNKL---KSIVMLGFLSKLEVLDLHGNEITNTGG----LTRLKKVNWIDLTGQKCVNE 187

Query: 228 IPSSLLNLNSSNSLEVID 245
                  L  +N+++  D
Sbjct: 188 PVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLD 167
           +    +L  L LS N    S +   L  L KL  L ++           + +   L  L 
Sbjct: 59  MQFFTNLKELHLSHNQI--SDL-SPLKDLTKLEELSVNRNRLKNLNG--IPSAC-LSRLF 112

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
           L  N L    + D L HL +L  L +  N L +       L  L  L  L L+  ++   
Sbjct: 113 LDNNEL---RDTDSLIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEI--- 162

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN 261
             ++   L     +  IDLT     N    +   
Sbjct: 163 --TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 514 IPPLP--SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVI 571
           + P P  +NA   NL K   +  +     LS  +   +  N+ +   L      F +L  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT-DLVSQKELSG-VQNFNGDNSNIQ-SLAG-MQFFTNLKE 67

Query: 572 LNLANNNFFGKIPNSMGFLHNIRSLSL-YNR-SQYEYKSTLGLVKILDLSSNKLGGGVPK 629
           L+L++N     +   +  L  +  LS+  NR        +  L   L L +N+L      
Sbjct: 68  LHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACL-SRLFLDNNELRD--TD 122

Query: 630 EIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMD 689
            ++ L  L  L++  N L   I   +G L  L+ LDL  N+        L++L  ++ +D
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWID 178

Query: 690 LSYNNLS 696
           L+     
Sbjct: 179 LTGQKCV 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ 327
             + L  N L             L  L+L   EL  +    G +  L  L LS  +L+  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-S 91

Query: 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF---SSLKQLNLENNLLNGTIHKS 384
           L    Q L +      L  L +S N +T S+P  G       L++L L+ N L     K+
Sbjct: 92  LPLLGQTLPA------LTVLDVSFNRLT-SLPL-GALRGLGELQELYLKGNEL-----KT 138

Query: 385 I-----GQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           +         KLE L L  N+L   +   L + L  L  L L +NSL 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 17/209 (8%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
              ++  + N +  ++P         + L LS           L   +RL  L+L    L
Sbjct: 12  HLEVNCDKRNLT--ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
                L     L  L  L L  N L +      L   L +LT L +    L  +   +L 
Sbjct: 68  ---TKLQVDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLR 292
            L     L+ + L  N L  ++ P L   +  L +++SL +N L   +P      + +L 
Sbjct: 122 GLGE---LQELYLKGNELK-TLPPGLLTPTPKL-EKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 293 YLDLSSNELRGIPKFLGNMCGLKILYLSG 321
            L L  N L  IPK       L   +L G
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 39/194 (20%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
            L+    LT L+L R     + +    G+L  L  L LS  +    +P     L  L  L
Sbjct: 50  TLMPYTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVL 105

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226
           D+SFN L S      L  L  L  LYL  N+L      +  L+    L  LSL +     
Sbjct: 106 DVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLAN----- 157

Query: 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AF 285
                                 NNLT  +   L N   +L D + L  N L  +IP+  F
Sbjct: 158 ----------------------NNLT-ELPAGLLNGLENL-DTLLLQENSLY-TIPKGFF 192

Query: 286 GRMVSLRYLDLSSN 299
           G    L +  L  N
Sbjct: 193 GSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG 673
            IL LS N L       +M    L  LNL R  LT       G L  L  LDLS NQ   
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQ-LQ 90

Query: 674 GIPSSLSQLSGLSVMDLSYNNLSGKIPLG-----TQLQ 706
            +P     L  L+V+D+S+N L+  +PLG      +LQ
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 514 IPP-LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572
           +PP LP + T L+LS+N              RL  L+L    L+ KL        +L +L
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ----VDGTLPVL 79

Query: 573 NLA--NNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKST-----LGLVKILDLSSNKLGG 625
                ++N    +P     L  +  L +   ++           LG ++ L L  N+L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNEL-K 137

Query: 626 GVPKEIMD-LVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLS 683
            +P  ++     L  L+L+ NNLT ++   +   L++LD L L  N     IP       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSH 195

Query: 684 GLSVMDLSYN 693
            L    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 41/167 (24%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 547 YLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY 606
            L LS NLL          +  L  LNL                  +  L +        
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRA--------------ELTKLQVDGT----- 75

Query: 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLD 665
              L ++  LDLS N+L   +P     L  L  L++S N LT  +       L  L  L 
Sbjct: 76  ---LPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

Query: 666 LSRNQFFGGIPSSL-SQLSGLSVMDLSYNNLSGKIPLG-----TQLQ 706
           L  N+    +P  L +    L  + L+ NNL+ ++P G       L 
Sbjct: 131 LKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 45/243 (18%), Positives = 71/243 (29%), Gaps = 56/243 (23%)

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
           S   ++     +T ++P          L+L  NLL      ++    +L  L L+   L 
Sbjct: 11  SHLEVNCDKRNLT-ALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 403 GVISEALFSNLSRLAALDLADNSLT-LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ 461
            +    +   L  L  LDL+ N L  L      +P   L  + +             +  
Sbjct: 69  KL---QVDGTLPVLGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFN----------RLT 113

Query: 462 NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNA 521
           +        L   +  L L  N+++   P L                       P P   
Sbjct: 114 SLPLGALRGLGELQ-ELYLKGNELKTLPPGL---LT------------------PTP-KL 150

Query: 522 TSLNLSKNKFSGSISFLCSLSN-------RLIYLDLSNNLLSGKLPDCWFQFDSLVILNL 574
             L+L+ N        L  L          L  L L  N L   +P  +F    L    L
Sbjct: 151 EKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 575 ANN 577
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSR 162
           +      L  LT LD+S N    +S+P   L  LG+L  L L   E     P  L    +
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY-- 220
           L+ L L+ NNL        L+ L +L  L L  N L             H L    L+  
Sbjct: 150 LEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKGFF---GSHLLPFAFLHGN 205

Query: 221 ----SCDL 224
               +C++
Sbjct: 206 PWLCNCEI 213

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 52/320 (16%), Positives = 109/320 (34%), Gaps = 31/320 (9%)

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272
           +   L      L  I   +         LE I++++N++   +   +F+    L +    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGD---LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFL-GNMCGLKILYLSGKELKGQLSEF 331
            +N L    PEAF  + +L+YL +S+  ++ +P     +     +L +        +   
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI---NIHTI 144

Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNL-ENNLLNGTIHKSI-GQLF 389
            ++   G +      L L+ N I     +    + L +LNL +NN L   +   +     
Sbjct: 145 ERNSFVGLSFE-SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS 202

Query: 390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF----QLNTISL 445
              +L ++   +   +      NL +L A    +           +P       L   SL
Sbjct: 203 GPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKK--------LPTLEKLVALMEASL 253

Query: 446 G---HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG 502
               HC     F  W + Q +  +   + +  R  ++  +     +             G
Sbjct: 254 TYPSHCC---AFANWRR-QISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRG 309

Query: 503 IDISSNHFEGPIPPLPSNAT 522
            D++   F+  +     + T
Sbjct: 310 FDMTYTEFDYDLCNEVVDVT 329

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 5e-13
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 45/267 (16%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
           +   L           I                                 L+ +++S N+
Sbjct: 31  NAIELRFVLTKLR--VIQ-----------------------KGAFSGFGDLEKIEISQND 65

Query: 173 LFSGENLDWLSHLSSLIYLYL-DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSS 231
           +      D  S+L  L  + +   N+L   +   +    L +L  L + +  +  +    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 232 LLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL 291
            ++        ++D+ +N   +++    F   S     + L  N +Q     AF      
Sbjct: 124 KIHS---LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 292 RYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--SLEWLH 348
                 +N L  +P        G  IL +S           I  L S   +N   L    
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTR--------IHSLPSYGLENLKKLRARS 232

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENN 375
             + +    +P L +  +L + +L   
Sbjct: 233 TYNLK---KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 46/222 (20%), Positives = 77/222 (34%), Gaps = 17/222 (7%)

Query: 514 IPP-LPSNATSLNLSKNKFSGSIS--FLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSL 569
           IP  LP NA  L     K    I         + L  +++S N +   +    F     L
Sbjct: 24  IPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 570 VILNLANNNFFGKIPNSM-GFLHNIRSLSLYN----RSQYEYKSTLGLVKILDLSSNKLG 624
             + +   N    I       L N++ L + N         +K       +LD+  N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 625 GGVPKEIMD--LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS-SLSQ 681
             + +          V L L++N +  +I         LD L+LS N     +P+     
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 682 LSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723
            SG  ++D+S   +   +P    L++  +L       L  LP
Sbjct: 201 ASGPVILDISRTRIH-SLPSYG-LENLKKLRARSTYNLKKLP 240

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
           S        +++T  +P+     +  +L      L      +      LE ++++ N + 
Sbjct: 10  SNRVFLCQESKVT-EIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN 462
            VI   +FSNL +L  + +   +              L  I+                  
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKAN-------------NLLYIN------------------ 96

Query: 463 TVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF-----EGPIPPL 517
             P  F +L + +  L +S+  ++  +PD+     +    +DI  N             L
Sbjct: 97  --PEAFQNLPNLQ-YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANN 577
              +  L L+KN      +   + +         NN L     D +      VIL+++  
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 578 NFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621
                    +  L  +R+ S YN  +      L  +    L+  
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 44/199 (22%)

Query: 158 GNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTL 217
             ++ L ++ L+  N+    +L  + +  ++  L ++    +N++     +S L +L  L
Sbjct: 41  AQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYNP----ISGLSNLERL 93

Query: 218 SLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQL 277
            +   D+      +L  L S   L ++D++ +   +S                       
Sbjct: 94  RIMGKDVTSDKIPNLSGLTS---LTLLDISHSAHDDS----------------------- 127

Query: 278 QGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS 337
              I      +  +  +DLS N        L  +  LK L +            + D   
Sbjct: 128 ---ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG--------VHDYRG 176

Query: 338 GCTKNSLEWLHLSSNEITG 356
                 L  L+  S  I G
Sbjct: 177 IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 30/198 (15%), Positives = 77/198 (38%), Gaps = 27/198 (13%)

Query: 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVI 244
             + +   L  +  +N +      ++++SLT ++L + ++     + L  +  +++++ +
Sbjct: 22  FKAYLNGLLGQSSTANITE-----AQMNSLTYITLANINV-----TDLTGIEYAHNIKDL 71

Query: 245 DLTENNLTNSVYPWLFNVSSSLVD--RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
            +   + TN      +N  S L +  R+ +    +          + SL  LD+S +   
Sbjct: 72  TINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 303 GI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNL 361
                 +  +  +  + LS        +  I D+    T   L+ L++  + +      +
Sbjct: 126 DSILTKINTLPKVNSIDLSY-------NGAITDIMPLKTLPELKSLNIQFDGVH-DYRGI 177

Query: 362 GEFSSLKQLNLENNLLNG 379
            +F  L QL   +  + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           M SL Y+ L++  +  +   +     +K L ++             + +     ++LE L
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERL 93

Query: 348 HLSSNEITGS-MPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
            +   ++T   +PNL   +SL  L++ ++  + +I   I  L K+  + L+ N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 407 EALFSNLSRLAALDLADNSLT 427
                 L  L +L++  + + 
Sbjct: 154 P--LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 14/145 (9%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
              ++  L ++  + +  +    +  L  L  L +   +        L  L+ L  LD+S
Sbjct: 64  YAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSCDLPPII 228
            +       L  ++ L  +  + L  N  +++       L  L  L +L++    +    
Sbjct: 121 HSAH-DDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGV---- 171

Query: 229 PSSLLNLNSSNSLEVIDLTENNLTN 253
                 +     L  +      +  
Sbjct: 172 -HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
            +  L +L  L +   + +   IP  L  L  L+ L +S +     I  ++  L ++  +
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
           DLS+N   +  ++  L  L  L  L +  + + ++      +     L  L  +S
Sbjct: 142 DLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 19/146 (13%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
                  +++ L +++         +  +  L+ L + GK++       +  L+S     
Sbjct: 60  TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----- 113

Query: 343 SLEWLHLSSNEITGS-MPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
            L  L +S +    S +  +     +  ++L  N     I   +  L +L+ L +  + +
Sbjct: 114 -LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 402 GGVISEALFSNLSRLAALDLADNSLT 427
                     +  +L  L     ++ 
Sbjct: 172 HDYRG---IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 65/220 (29%)

Query: 102 GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS 161
             IT A  ++  LTY+ L+  N   + +                           +    
Sbjct: 36  ANITEA--QMNSLTYITLANINV--TDLTG-------------------------IEYAH 66

Query: 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
            ++ L ++  +     N + +S LS+L  L +   D++  S+ +  LS L SLT L +  
Sbjct: 67  NIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISH 121

Query: 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI 281
                 I + +  L     +  IDL+ N     +                          
Sbjct: 122 SAHDDSILTKINTL---PKVNSIDLSYNGAITDI-------------------------- 152

Query: 282 PEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSG 321
                 +  L+ L++  + +    + + +   L  LY   
Sbjct: 153 -MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGV 627
            +  L   +    I  +   ++++  ++L N   +          +K L +++       
Sbjct: 25  YLNGLLGQSSTANITEAQ--MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-- 80

Query: 628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSV 687
              I  L  L  L +   ++T    P +  L SL  LD+S +     I + ++ L  ++ 
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 688 MDLSYNNLSGKI-PLG--TQLQSFN 709
           +DLSYN     I PL    +L+S N
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 49/179 (27%)

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
            N   L ++    + + + +  LSN L  L +    ++           S  I NL+   
Sbjct: 66  HNIKDLTINNIHAT-NYNPISGLSN-LERLRIMGKDVT-----------SDKIPNLSG-- 110

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV 638
                      L ++                      LD+S +     +  +I  L  + 
Sbjct: 111 -----------LTSLTL--------------------LDISHSAHDDSILTKINTLPKVN 139

Query: 639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
           +++LS N     I P +  L  L  L++  +         +     L+ +      + G
Sbjct: 140 SIDLSYNGAITDIMP-LKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 48/247 (19%)

Query: 186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID 245
            S   L L  N L +  ++         L  L L  C++  I   +  +L+    L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLI 82

Query: 246 LTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGI 304
           LT N +  S+    F+  SSL  ++      L  S+     G + +L+ L+++ N ++  
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSL-QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 305 PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF 364
                                  L E+  +L++      LE L LSSN+I  S+    + 
Sbjct: 140 K----------------------LPEYFSNLTN------LEHLDLSSNKIQ-SIYC-TDL 169

Query: 365 SSLKQL-------NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLA 417
             L Q+       +L  N +N  I     +  +L+ L L+ N L   + + +F  L+ L 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQ 227

Query: 418 ALDLADN 424
            + L  N
Sbjct: 228 KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 24/221 (10%)

Query: 163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS- 221
            + LDLSFN L    +         L  L L   ++    +       L  L+TL L   
Sbjct: 30  TKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGN 86

Query: 222 --CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG 279
               L     S L      +SL+ +   E NL  S+  +      +L   +++  N +Q 
Sbjct: 87  PIQSLALGAFSGL------SSLQKLVAVETNLA-SLENFPIGHLKTL-KELNVAHNLIQ- 137

Query: 280 SIPE--AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS 337
           S      F  + +L +LDLSSN+++ I     ++  L  + L    L   L+  +  +  
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNP-MNFIQP 194

Query: 338 GCTKN-SLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENN 375
           G  K   L+ L L +N++  S+P+      +SL+++ L  N
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 34/218 (15%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           +      L  LDLSR      +I +  +   L  LS L L+              LS LQ
Sbjct: 47  SFFSFPELQVLDLSRCEIQ--TIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
            L     NL S EN   + HL +L  L +  N + +F    +  S L +L  L L S  +
Sbjct: 104 KLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKI 161

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA 284
             I  + L  L+              +              L   + L  N +   I   
Sbjct: 162 QSIYCTDLRVLH-------------QMP------------LLNLSLDLSLNPMN-FIQPG 195

Query: 285 FGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSG 321
             + + L+ L L +N+L+ +P      +  L+ ++L  
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 16/168 (9%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKG 326
             + L  N L+     +F     L+ LDLS  E++ I      ++  L  L L+G     
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---- 86

Query: 327 QLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKS 384
            +        SG +   L+ L      +  S+ N  +G   +LK+LN+ +NL+       
Sbjct: 87  PIQSLALGAFSGLSS--LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 385 I-GQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA----LDLADNSLT 427
               L  LE L L+ N +   I       L ++      LDL+ N + 
Sbjct: 144 YFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 22/220 (10%)

Query: 514 IPP-LPSNATSLNLSKNKFS--GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSL 569
           IP  LP +  +L+LS N     GS SF  S    L  LDLS   +   + D  +     L
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLGSYSFF-SFPE-LQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 570 VILNLANNNFFGKIPNSM-GFLHNIRSLSL-YNRSQY-EYKSTLGLV--KILDLSSNKLG 624
             L L  N     +       L +++ L          E      L   K L+++ N + 
Sbjct: 79  STLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 625 G-GVPKEIMDLVGLVALNLSRNNLT---GQITPKIGQLKSLDF-LDLSRNQFFGGIPSSL 679
              +P+   +L  L  L+LS N +          + Q+  L+  LDLS N     I    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA 196

Query: 680 SQLSGLSVMDLSYNNLSGKIPLGT--QLQSFNELVYAGNP 717
            +   L  + L  N L   +P G   +L S  ++    NP
Sbjct: 197 FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 55/326 (16%), Positives = 94/326 (28%), Gaps = 50/326 (15%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGK---LSYLGLS----SAEFAGPIPHQLGNLSRLQFL 166
           +    L  +  +          L +   +  + LS      E A  +   + +   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 167 DLSFNNLFSGEN---------LDWLSHLSSLIYLYLDLNDLSN--FSNWVQLLSKLHSLT 215
           + S       ++         L  L     L  + L  N          +  LSK   L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 216 TLSLYSCDLPP----------IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWL---FNV 262
            L L++  L P             +      ++  L  I    N L N         F  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 263 SSSLVDRISLPSNQL-----QGSIPEAFGRMVSLRYLDLSSNEL-----RGIPKFLGNMC 312
              L   + +  N +     +  + E       L+ LDL  N         +   L +  
Sbjct: 186 HRLLHT-VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 313 GLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS-MPNLGE-----FSS 366
            L+ L L+   L  + +  + D  S      L+ L L  NEI    +  L          
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 367 LKQLNLENNLLN--GTIHKSIGQLFK 390
           L  L L  N  +    +   I ++F 
Sbjct: 305 LLFLELNGNRFSEEDDVVDEIREVFS 330

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 51/330 (15%), Positives = 98/330 (29%), Gaps = 56/330 (16%)

Query: 139 LSYLGLS----SAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGEN-----LDWLSHLSSLI 189
           +    L     + E    +   L     ++ + LS N +  G        + ++    L 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIASKKDLE 63

Query: 190 YLYLDLNDLSNFSNWV--------QLLSKLHSLTTLSLYSCDLPPIIPSSLLN-LNSSNS 240
                        + +        Q L K   L T+ L      P     L++ L+    
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
           LE + L  N L       +      L       +                LR +    N 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-------------PLRSIICGRNR 170

Query: 301 L-----RGIPKFLGNMCGLKILYLSGKELKGQ-LSEFIQDLSSGCTKNSLEWLHLSSNEI 354
           L     +   K   +   L  + +    ++ + +   + +  + C    L+ L L  N  
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTF 228

Query: 355 TGS-MPNLGEF----SSLKQLNLENNLLNGTIHKSIGQLFK------LEMLKLNGNSLGG 403
           T      L        +L++L L + LL+     ++   F       L+ L+L  N +  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 404 ----VISEALFSNLSRLAALDLADNSLTLE 429
                +   +   +  L  L+L  N  + E
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 54/351 (15%), Positives = 109/351 (31%), Gaps = 84/351 (23%)

Query: 343 SLEWLHLSSNEITGS-----MPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK----LEM 393
           S+E   L  + IT          L E  S+K++ L  N +     + + +       LE+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 394 LKLNGNSLG----------GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNT- 442
            + +    G           ++ +AL     +L  + L+DN+         I     +T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 443 ---ISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDIS 499
              + L +  +GP+    +                R L  L+ N+     P L       
Sbjct: 124 LEHLYLHNNGLGPQAGAKI---------------ARALQELAVNKKAKNAPPLR-SIICG 167

Query: 500 GPGI-DISSNHF-EGPIPPLPSNA--TSLNLSKNKFS--GSISFLCSL---SNRLIYLDL 550
              + + S   + +       S+    ++ + +N     G    L         L  LDL
Sbjct: 168 RNRLENGSMKEWAKT----FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 551 SNNLLSGK--------LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRS 602
            +N  +          L        +L  L L +        ++ G    + + S     
Sbjct: 224 QDNTFTHLGSSALAIALKSW----PNLRELGLNDCLL-----SARGAAAVVDAFSKLENI 274

Query: 603 QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG-----LVALNLSRNNLT 648
                     ++ L L  N++     + +  ++      L+ L L+ N  +
Sbjct: 275 G---------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 25/184 (13%)

Query: 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFG 286
           +P SL      +   ++DL+ NNL+     W     ++L   + L  N L   I   AF 
Sbjct: 33  VPQSL-----PSYTALLDLSHNNLSRLRAEWTPTRLTNLH-SLLLSHNHLN-FISSEAFV 85

Query: 287 RMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--S 343
            + +LRYLDLSSN L  + +    ++  L++L L            I  +     ++   
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH--------IVVVDRNAFEDMAQ 137

Query: 344 LEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKL--EMLKLN 397
           L+ L+LS N+I+      + +  +   L  L+L +N L       + +L       L L+
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 398 GNSL 401
            N L
Sbjct: 198 NNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 7/168 (4%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
           +   LDLS NN S          L  L  L LS              +  L++LDLS N+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 173 LFSGENLDW--LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           L     LD    S L +L  L L  N +            +  L  L L    +      
Sbjct: 100 L---HTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
            + + N    L ++DL+ N L       L  + + + + + L +N L+
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
           S    LDLS NNL         + L++L  L L  N L+  S+       + +L  L L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 221 SCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
           S  L  +      +L    +LEV+ L  N++                    +        
Sbjct: 97  SNHLHTLDEFLFSDL---QALEVLLLYNNHIV------------------VVD------- 128

Query: 281 IPEAFGRMVSLRYLDLSSNELRGIP----KFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336
              AF  M  L+ L LS N++   P    K    +  L +L LS      +L +      
Sbjct: 129 -RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN----KLKKLPLTDL 183

Query: 337 SGCTKNSLEWLHLSSN 352
                     L+L +N
Sbjct: 184 QKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 514 IPP-LPSNATSLNLSKNKFS--GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSL 569
           +P  LPS    L+LS N  S   +      L+N L  L LS+N L+  +    F    +L
Sbjct: 33  VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLN-FISSEAFVPVPNL 90

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK 629
             L+L++N+           LH +      +         L  +++L L +N +   V +
Sbjct: 91  RYLDLSSNH-----------LHTLDEFLFSD---------LQALEVLLLYNNHIVV-VDR 129

Query: 630 EIMD-LVGLVALNLSRNNLTGQITPKI----GQLKSLDFLDLSRNQFFGGIPSSLSQLSG 684
              + +  L  L LS+N ++ +   ++     +L  L  LDLS N+      + L +L  
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 685 LSVMDLSYNN 694
                L  +N
Sbjct: 189 WVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
           A + + +L YLDLS N+    ++       L  L  L L +        +   ++++LQ 
Sbjct: 83  AFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 166 LDLSFNNL--FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLY 220
           L LS N +  F  E +   + L  L+ L L  N L         L KL +     LY
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 541 LSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599
           L +    LDLS+N LS    +       +L  L L++N+    I +       + +L   
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISS--EAFVPVPNL--- 90

Query: 600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI-MDLVGLVALNLSRNNLTGQITPKI-GQ 657
                         + LDLSSN L   + + +  DL  L  L L  N++   +       
Sbjct: 91  --------------RYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134

Query: 658 LKSLDFLDLSRNQFF---GGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT 703
           +  L  L LS+NQ       +    ++L  L ++DLS N L  K+PL  
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 13/197 (6%)

Query: 114 LTYLDLSRNNFSGSSIPEF-LGSLGKLSYLGLSSAEFAGPIP-HQLGNLSRLQFLDLSFN 171
              L L   +    +IP     +L  +S + +S       +  H   NLS++  +++   
Sbjct: 33  TQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 172 NLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS-CDLPPIIPS 230
              +  + D L  L  L +L +    L  F + +  +        L +     +  I  +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMV 289
           +   L   N    + L  N  T SV  + FN +   +D + L  N+    I + AFG + 
Sbjct: 150 AFQGL--CNETLTLKLYNNGFT-SVQGYAFNGTK--LDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 290 S-LRYLDLSSNELRGIP 305
           S    LD+S   +  +P
Sbjct: 205 SGPSLLDVSQTSVTALP 221

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 46/267 (17%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
                 ++  +     IP    S      L L          H   NL  +  + +S + 
Sbjct: 12  QEEDFRVTCKDIQ--RIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 173 LFSGENLDWLSHLSSLIYLYLDLN-DLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSS 231
                      +LS + ++ +    +L+        L +L  L  L +++  L       
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP--DALKELPLLKFLGIFNTGLKMF--PD 122

Query: 232 LLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL 291
           L  + S++   ++++T+N    S+    F           L +                 
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQ---------GLCN---------------ET 158

Query: 292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGC---TKNSLEWLH 348
             L L +N    +  +  N   L  +YL+        ++++  +         +    L 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNK-------NKYLTVIDKDAFGGVYSGPSLLD 211

Query: 349 LSSNEITGSMPNLGEFSSLKQLNLENN 375
           +S   +T ++P+      LK+L   N 
Sbjct: 212 VSQTSVT-ALPS-KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 14/195 (7%)

Query: 514 IPPLPSNATSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQ-FDSLVI 571
           IP LP +  +L L +            +L N +  + +S ++   +L    F     +  
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 572 LNLANNNFFGKIPNSM-GFLHNIRSLSLYNR-----SQYEYKSTLGLVKILDLSSNKLGG 625
           + + N      I       L  ++ L ++N             +  +  IL+++ N    
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 626 GVPKEIMDLVG--LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS-SLSQL 682
            +P      +    + L L  N  T  +         LD + L++N++   I   +   +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 683 -SGLSVMDLSYNNLS 696
            SG S++D+S  +++
Sbjct: 204 YSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 43/252 (17%), Positives = 93/252 (36%), Gaps = 30/252 (11%)

Query: 336 SSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
           S  C  +  E   ++  +I   +P+L    S + L L    L      +   L  +  + 
Sbjct: 5   SPPCECHQEEDFRVTCKDIQ-RIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADN-SLTLEFSHDWIPP------FQLNTISLGHC 448
           ++ +     +    F NLS++  +++ +  +LT       I P        L  + + + 
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY------IDPDALKELPLLKFLGIFNT 115

Query: 449 KMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGI-DISS 507
            +   FP   +  +T   +  ++T    + ++  N  +G + + +L   +   G   +  
Sbjct: 116 GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNGFTSVQG 173

Query: 508 NHFEGPIPPLPSNATSLNLSKNKFSGSIS--FLCSLSNRLIYLDLSNNLLSGKLPDCWFQ 565
             F G      +   ++ L+KNK+   I       + +    LD+S   ++  LP     
Sbjct: 174 YAFNG------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KG 224

Query: 566 FDSLVILNLANN 577
            + L  L   N 
Sbjct: 225 LEHLKELIARNT 236

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK--FLGNMCGLKILYLSGKELK 325
            ++ L SN+L     +AF R+  LR L L+ N+L+ +P   F   +  L+ L+++  +L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDNKL- 97

Query: 326 GQLSEFIQDLSSGCTKN--SLEWLHLSSNEITGSMPNLGEFSS---LKQLNLENNLLNGT 380
                  Q L  G      +L  L L  N++  S+P    F S   L  L+L  N L   
Sbjct: 98  -------QALPIGVFDQLVNLAELRLDRNQLK-SLPP-RVFDSLTKLTYLSLGYNELQSL 148

Query: 381 IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
                 +L  L+ L+L  N L   + E  F  L+ L  L L +N L 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 60/217 (27%), Positives = 88/217 (40%), Gaps = 49/217 (22%)

Query: 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC---DLPPIIPSSLLNLNSSNSLEVIDL 246
            L L  N LS+  +      +L  L  L L       LP  I   L NL +      + +
Sbjct: 41  KLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET------LWV 92

Query: 247 TENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIP 305
           T+N L  ++   +F+   +L   + L  NQL+ S+P   F  +  L YL L  NEL+ +P
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNL-AELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEF- 364
           K  G    L                            SL+ L L +N++   +P  G F 
Sbjct: 150 K--GVFDKLT---------------------------SLKELRLYNNQLK-RVPE-GAFD 178

Query: 365 --SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399
             + LK L L+NN L      +   L KL+ML+L  N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQFLDLSFNN 172
              LDL  N  S      F   L KL  L L+  +    +P  +   L  L+ L ++ N 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
           L +         L +L  L LD N L +    V     L  LT LSL   +L  +     
Sbjct: 97  LQALPI-GVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
             L S   L+ + L  N L   V    F+  + L   + L +NQL+     AF  +  L+
Sbjct: 154 DKLTS---LKELRLYNNQLK-RVPEGAFDKLTELK-TLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 293 YLDLSSN 299
            L L  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 30/157 (19%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQFL 166
           +L++L  L ++ N     ++P   F   L  L+ L L   +    +P ++  +L++L +L
Sbjct: 83  ELKNLETLWVTDNKL--QALPIGVFDQ-LVNLAELRLDRNQLKS-LPPRVFDSLTKLTYL 138

Query: 167 DLSFNNLFSGENLDWLSH-----LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
            L +N L S      L       L+SL  L L  N L           KL  L TL L +
Sbjct: 139 SLGYNELQS------LPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDN 190

Query: 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW 258
             L  +   +  +L     L+++ L EN       PW
Sbjct: 191 NQLKRVPEGAFDSL---EKLKMLQLQEN-------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 17/191 (8%)

Query: 514 IPP-LPSNATSLNLSKNKFSGSISF--LCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSL 569
           IP  +P++   L+L  NK S S+       L+  L  L L++N L   LP   F +  +L
Sbjct: 31  IPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTK-LRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 570 VILNLANNNFFGKIPNSM-GFLHNIRSLSLYNRSQYEYKST-----LGLVKILDLSSNKL 623
             L +  +N    +P  +   L N+  L L    Q +         L  +  L L  N+L
Sbjct: 88  ETLWV-TDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 624 GGGVPKEIMD-LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL 682
              +PK + D L  L  L L  N L         +L  L  L L  NQ       +   L
Sbjct: 146 QS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 683 SGLSVMDLSYN 693
             L ++ L  N
Sbjct: 205 EKLKMLQLQEN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 31/200 (15%)

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFA--GPIPHQLGNLSRLQFLDLSFNN 172
              +L + + +          L  +  +  ++++      I +    L  +++L L  N 
Sbjct: 22  IKANLKKKSVT--DAVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNK 74

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS---CDLPPIIP 229
           L     L     L++L YL L  N L +  N V    KL +L  L L       LP  + 
Sbjct: 75  LHDISALK---ELTNLTYLILTGNQLQSLPNGV--FDKLTNLKELVLVENQLQSLPDGVF 129

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV--DRISLPSNQLQGSIPE-AFG 286
             L NL        ++L  N L  S+   +F+    L     + L  NQLQ S+PE  F 
Sbjct: 130 DKLTNL------TYLNLAHNQLQ-SLPKGVFD---KLTNLTELDLSYNQLQ-SLPEGVFD 178

Query: 287 RMVSLRYLDLSSNELRGIPK 306
           ++  L+ L L  N+L+ +P 
Sbjct: 179 KLTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 27/196 (13%)

Query: 238 SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLS 297
                  +L + ++T        N  +S+ D+I   ++ ++ S+      + ++RYL L 
Sbjct: 18  FAETIKANLKKKSVT-DAVT--QNELNSI-DQIIANNSDIK-SVQ-GIQYLPNVRYLALG 71

Query: 298 SNELRGIPKF--LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN--SLEWLHLSSNE 353
            N+L  I     L N   L  L L+G +L        Q L +G      +L+ L L  N+
Sbjct: 72  GNKLHDISALKELTN---LTYLILTGNQL--------QSLPNGVFDKLTNLKELVLVENQ 120

Query: 354 ITGSMPNLGEF---SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF 410
           +  S+P+ G F   ++L  LNL +N L         +L  L  L L+ N L   + E +F
Sbjct: 121 LQ-SLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVF 177

Query: 411 SNLSRLAALDLADNSL 426
             L++L  L L  N L
Sbjct: 178 DKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 312 CGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLN 371
                  L  K +         D  +    NS++ +  ++++I  S+  +    +++ L 
Sbjct: 19  AETIKANLKKKSVT--------DAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLA 69

Query: 372 LENNLLNGTIHKSIG---QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           L  N L       I    +L  L  L L GN L  +    +F  L+ L  L L +N L 
Sbjct: 70  LGGNKL-----HDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQ 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
                +L    +         +  +  +  +  ++        + +       ++ +L L
Sbjct: 20  ETIKANLKKKSVTDAVTQNE-LNSIDQIIANNSDI--------KSVQGIQYLPNVRYLAL 70

Query: 350 SSNEITGSMPNLGEF---SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
             N++     ++      ++L  L L  N L    +    +L  L+ L L  N L  +  
Sbjct: 71  GGNKLH----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-P 125

Query: 407 EALFSNLSRLAALDLADNSLT 427
           + +F  L+ L  L+LA N L 
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQ 146

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 65/361 (18%), Positives = 122/361 (33%), Gaps = 64/361 (17%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGK----LSYLGLS----SAEFAGPIPHQL- 157
                  +T LDLS NN    S  E + +       ++ L LS      + +  +   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 158 GNLSRLQFLDLSFNNLFSGENLDWLSHL-----SSLIYLYLDLNDLSNF--SNWVQLLSK 210
              + +  L+LS N L S ++ D L         ++  L L  ND S+   S + Q  S 
Sbjct: 77  AIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 211 LH-SLTTLSLYSCDLPP----IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLF----N 261
           L  S+T+L+L   DL       +   L  + +  ++  ++L  NNL +     L     +
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 262 VSSSLVDRISLPSNQLQGSIPEAFGRMV-----SLRYLDLSSNEL-----RGIPKFLGNM 311
           + +S+   + L +N L          +       +  L+L  N L       +     ++
Sbjct: 194 IPASVT-SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 312 CGLKILYLSGKELKGQLSEFIQDLSSGCTKN-SLEWLHLSSNEITGS-MPNLGEFSSLKQ 369
             L+ +YL    +K    E  + L +       +  +  +  EI  S    +     +++
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN--LIRE 310

Query: 370 LNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV----ISEALFSNLSRLAALDLADNS 425
           L+                  K ++  L    L        +    +    L         
Sbjct: 311 LS-----------------GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 426 L 426
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 41/257 (15%)

Query: 206 QLLSKLHSLTTLSLYSCDLPPIIPSSLLN--LNSSNSLEVIDLTENNLTNSVYPWL---F 260
           +  S  H +T+L L   +L  I    L+    N+  S+  ++L+ N+L       L    
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 261 NVSSSLVDRISLPSNQLQGSIPEAFGRMV-----SLRYLDLSSNEL--RGIPKFLGNM-- 311
               + V  ++L  N L     +   + +     ++  LDL  N+   +           
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFS 134

Query: 312 ---CGLKILYLSGKELKGQ----LSEFIQDLSSGCTKNSLEWLHLSSNEITGS-MPNLGE 363
                +  L L G +L  +    L + +  + +     ++  L+L  N +       L +
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNNLASKNCAELAK 189

Query: 364 F-----SSLKQLNLENNLLNGTIHKSIGQLFK-----LEMLKLNGNSLGGVISEAL---F 410
           F     +S+  L+L  NLL    +  +  +F      +  L L  N L G   E L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 411 SNLSRLAALDLADNSLT 427
            +L  L  + L  + + 
Sbjct: 250 DSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 64/379 (16%), Positives = 112/379 (29%), Gaps = 108/379 (28%)

Query: 372 LENNLLNGTIHKSIGQLFK----LEMLKLNGNSLG--GV--ISEALFSNLSRLAALDLAD 423
           +   L        + +       +  L L+ N+L       + +A  +  + + +L+L+ 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 424 NSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSN 483
           NSL  +                 +        + L            +T     LNLS N
Sbjct: 61  NSLGFK-----------------NSDE---LVQILAAIPAN------VTS----LNLSGN 90

Query: 484 QMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGS-----ISFL 538
                         +S    D             P   T L+L  N FS           
Sbjct: 91  F-------------LSYKSSDELVKTLAAI----PFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 539 CSLSNRLIYLDLSNNLLSG----------KLPDCWFQFDSLVILNLANNNFFGKIPNSMG 588
            +L   +  L+L  N L                      ++  LNL  NN       S  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNNL-----ASKN 183

Query: 589 FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLV-----GLVALNLS 643
                + L+    S          V  LDLS+N LG     E+  +       +V+LNL 
Sbjct: 184 CAELAKFLASIPAS----------VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 644 RNNLTGQITPKIGQL----KSLDFLDLSRNQF-------FGGIPSSLSQLSGLSVMDLSY 692
            N L G     +  L    K L  + L  +            + ++   +  + ++D + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 693 NNL--SGKIPLGTQLQSFN 709
             +  S  IP+   ++  +
Sbjct: 294 KEIHPSHSIPISNLIRELS 312

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 1e-10
 Identities = 88/616 (14%), Positives = 174/616 (28%), Gaps = 189/616 (30%)

Query: 57  ILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTY 116
           ++S  + E  +        +    R  + N++              K+  ALL+L+    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA-------EFAGPIPH--QLGNLSRLQFLD 167
           + +      G      LGS GK +++ L          +    I     L N +  + + 
Sbjct: 153 VLID-----G-----VLGS-GK-TWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVL 199

Query: 168 LSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227
                L    + +W S       + L ++ +           +L  L     Y       
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---------ELRRLLKSKPY------- 243

Query: 228 IPSSLL---NLNSSNSLEVIDL-------TEN-NLTNSVYPWLFNVSSSLVDRISLPSNQ 276
             + LL   N+ ++ +    +L       T    +T+ +       S++    ISL  + 
Sbjct: 244 -ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-------SAATTTHISL--DH 293

Query: 277 LQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336
              ++     + + L+YLD    +L   P+    +       LS       ++E I+D  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL---PR---EVLTTNPRRLS------IIAESIRD-- 339

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKL 396
                                     +    K +N +   L   I  S+  L   E    
Sbjct: 340 ---------------------GLATWDN--WKHVNCDK--LTTIIESSLNVLEPAEY--- 371

Query: 397 NGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHD-WIPPFQLNTISLGHCKMGPRFP 455
                       +F  LS               F     IP   L+ I            
Sbjct: 372 ----------RKMFDRLSV--------------FPPSAHIPTILLSLI------------ 395

Query: 456 KWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG--------ID--- 504
            W     +      +  H+  L+     +    +P + L   +            +D   
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 505 ISSNHFEGPIPPLPSNATSLN-----LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL 559
           I        + P   +    +     L   +    ++       R+++LD     L  K+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDF--RFLEQKI 507

Query: 560 -PDCWFQFDSLVILNL------------ANNNFFGKIPNS-MGFLHN-----IRS----- 595
             D      S  ILN              N+  + ++ N+ + FL       I S     
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 596 --LSLYNRSQYEYKST 609
             ++L    +  ++  
Sbjct: 568 LRIALMAEDEAIFEEA 583

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK--FLGNMCGLKILYLSGKEL 324
           +  I L  N ++   P AF     LR +DLS+N++  +    F G +  L  L L G ++
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGNKI 92

Query: 325 KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLN---LENNLLNGTI 381
                   + L       SL+ L L++N+I   +     F  L  LN   L +N L    
Sbjct: 93  TELPKSLFEGLF------SLQLLLLNANKIN-CLRV-DAFQDLHNLNLLSLYDNKLQTIA 144

Query: 382 HKSIGQLFKLEMLKLNGN 399
             +   L  ++ + L  N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164
           A    + L  +DLS N    S +    F G L  L+ L L   +           L  LQ
Sbjct: 51  AFSPYKKLRRIDLSNNQI--SELAPDAFQG-LRSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221
            L L+ N +      D    L +L  L L  N L   +      S L ++ T+ L  
Sbjct: 108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 41/162 (25%)

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
              +L+ +DLS N +      D    L SL  L L  N ++       L   L SL  L 
Sbjct: 54  PYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPK--SLFEGLFSLQLLL 110

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
           L +                           N +   +    F    +L + +SL  N+LQ
Sbjct: 111 LNA---------------------------NKIN-CLRVDAFQDLHNL-NLLSLYDNKLQ 141

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320
                 F  + +++ + L+ N            C   + +L+
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI---------CDCHLKWLA 174

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQ 164
           A   L+ L  L L  N    + +P      L  L  L L++ +    +      +L  L 
Sbjct: 75  AFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLN 131

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN------DLSNFSNWVQ 206
            L L  N L +       S L ++  ++L  N       L   ++++ 
Sbjct: 132 LLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 29/163 (17%)

Query: 514 IPP-LPSNATSLNLSKNKFSGSISF--LCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSL 569
           IP  LP   T + L +N     I           L  +DLSNN +S +L    F    SL
Sbjct: 26  IPTNLPETITEIRLEQNTIK-VIPPGAFSPYKK-LRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK 629
             L L  N    ++P        + SL                 ++L L++NK+   +  
Sbjct: 83  NSLVLYGNK-ITELPK--SLFEGLFSL-----------------QLLLLNANKI-NCLRV 121

Query: 630 EIMD-LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           +    L  L  L+L  N L          L+++  + L++N F
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
           + L++  +    +   N    + L L G ++       I++L +   +   + +  S NE
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGYKI-----PVIENLGATLDQ--FDAIDFSDNE 53

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           I   +        LK L + NN +          L  L  L L  NSL  +      ++L
Sbjct: 54  IR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 414 SRLAALDLADNSLT 427
             L  L +  N +T
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
           L     +D S N      + +    L +L  L +++             L  L  L L+ 
Sbjct: 41  LDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTL 217
           N+L    +LD L+ L SL YL +  N ++N  +  + ++ K+  +  L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
            V  R LDL   ++  I      +     +  S  E++      +           L+ L
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----LDGFPL---LRRLKTL 69

Query: 348 HLSSNEITGSMPNLGE-FSSLKQLNLENNLLN--GTIHKSIGQLFKLEMLKLNGN 399
            +++N I      L +    L +L L NN L   G +   +  L  L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
            L +   +D S N +   +       L  L  L ++ N +        L   L  LT L 
Sbjct: 40  TLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGEG--LDQALPDLTELI 94

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
           L +  L  +    L  L S  SL  + +  N +TN
Sbjct: 95  LTNNSLVEL--GDLDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 156 QLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLT 215
           Q  N  R + LDL    +   ENL   + L     +    N++            L  L 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLDG----FPLLRRLK 67

Query: 216 TLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
           TL + +  +  I       L     L  + LT N+L  
Sbjct: 68  TLLVNNNRICRIGEGLDQAL---PDLTELILTNNSLVE 102

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
             L L+ N     E       L  L  +    N +++             +  + L S  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTSNR 92

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           L  +       L    SL+ + L  N +T  V    F   SS+   +SL  NQ+  ++  
Sbjct: 93  LENVQHKMFKGL---ESLKTLMLRSNRIT-CVGNDSFIGLSSV-RLLSLYDNQIT-TVAP 146

Query: 284 -AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320
            AF  + SL  L+L +N            C   + +L 
Sbjct: 147 GAFDTLHSLSTLNLLANPFN---------CNCYLAWLG 175

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 28/158 (17%)

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE- 283
           P  IP     L          L  N  T      +F     L  +I+  +N++   I E 
Sbjct: 27  PEHIPQYTAEL---------RLNNNEFTVLEATGIFKKLPQLR-KINFSNNKIT-DIEEG 75

Query: 284 AFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
           AF     +  + L+SN L  +  K    +  LK L L    +          + +     
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI--------TCVGNDSFIG 127

Query: 343 --SLEWLHLSSNEITGSMPNLGEF---SSLKQLNLENN 375
             S+  L L  N+IT ++   G F    SL  LNL  N
Sbjct: 128 LSSVRLLSLYDNQIT-TVAP-GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF 174
             L L+ N F+          L +L  +  S+ +            S +  + L+ N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL- 93

Query: 175 SGENLDW--LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
             EN+       L SL  L L  N ++   N       L S+  LSLY   +  + P + 
Sbjct: 94  --ENVQHKMFKGLESLKTLMLRSNRITCVGNDS--FIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPW 258
             L   +SL  ++L  N       P+
Sbjct: 150 DTL---HSLSTLNLLAN-------PF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 342 NSLEWLHLSSNEITGSMPNLGEF---SSLKQLNLENNLLNGTIHKSI-GQLFKLEMLKLN 397
             L  ++ S+N+IT  +   G F   S + ++ L +N L   +   +   L  L+ L L 
Sbjct: 57  PQLRKINFSNNKIT-DIEE-GAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 398 GNSLGGVISEALFSNLSRLAALDLADNSLT 427
            N +   +    F  LS +  L L DN +T
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 613 VKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQ 670
              L L++N+        I   L  L  +N S N +T  I          ++ + L+ N+
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 671 FFGGIPSSL-SQLSGLSVMDLSYNNLSGKIPLGT 703
               +   +   L  L  + L  N ++  +   +
Sbjct: 93  -LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL----RGIPKFLGNMCGLKILYLSGKE 323
           +++ L S  L       F  +  L +L+L  N+L     G+   L     L  L L+  +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLANNQ 94

Query: 324 LKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSS---LKQLNLENNLL--- 377
           L   L   + D     T+  L+ L+L  N++  S+P+ G F     LK+L L  N L   
Sbjct: 95  LA-SLPLGVFD---HLTQ--LDKLYLGGNQLK-SLPS-GVFDRLTKLKELRLNTNQLQSI 146

Query: 378 -NGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
             G   K    L  L+ L L+ N L  V   A F  L +L  + L  N
Sbjct: 147 PAGAFDK----LTNLQTLSLSTNQLQSVPHGA-FDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 28/170 (16%)

Query: 191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS---CDLPPIIPSSLLNLNSSNSLEVIDLT 247
           L L    L+  S+       L  LT L+L       L   +   L  L        + L 
Sbjct: 40  LDLQSTGLATLSDAT--FRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL------GTLGLA 91

Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPK 306
            N L  S+   +F+  + L D++ L  NQL+ S+P   F R+  L+ L L++N+L+ IP 
Sbjct: 92  NNQLA-SLPLGVFDHLTQL-DKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 307 ----FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN 352
                L N   L+ L LS  +L+         L        L+ + L  N
Sbjct: 149 GAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLG------KLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 39/184 (21%)

Query: 142 LGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNF 201
           L L S   A         L++L +L+L +N L +         L+ L  L L  N     
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANN----- 93

Query: 202 SNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN 261
               QL S              LP  +   L        L+ + L  N L  S+   +F+
Sbjct: 94  ----QLAS--------------LPLGVFDHLTQ------LDKLYLGGNQLK-SLPSGVFD 128

Query: 262 VSSSLVD--RISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKIL 317
               L     + L +NQLQ SIP  AF ++ +L+ L LS+N+L+ +P      +  L+ +
Sbjct: 129 ---RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 318 YLSG 321
            L G
Sbjct: 185 TLFG 188

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.0 bits (140), Expect = 7e-09
 Identities = 47/327 (14%), Positives = 107/327 (32%), Gaps = 23/327 (7%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
             + L  + +   +F    +  F  +   L      S      +P +  NL   + L   
Sbjct: 218 NCRSLVSVKVG--DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 170 FNNLFSGENLDWL-SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPII 228
             +      +  L    + +  L L    L    +   L+ K  +L  L   +     I 
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETRNV----IG 330

Query: 229 PSSLLNL-NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR 287
              L  L      L+ + +        +      VS   +  ++    +L+         
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE--------- 381

Query: 288 MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSG--KELKGQLSEFIQDLSSGCTKNSLE 345
            +++   D+++  L  I  +L N+C  +++ L    +     L   ++ L  GC K    
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 346 WLHLSSNEIT-GSMPNLGEF-SSLKQLNLEN-NLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
             +L    +T   +  +G++  +++ + L      +  + +       L+ L++ G    
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 403 GVISEALFSNLSRLAALDLADNSLTLE 429
                A  + L  L  L +     ++ 
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 44/316 (13%), Positives = 101/316 (31%), Gaps = 37/316 (11%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
            L+      L+ +          +    KL  LGLS       +P      ++++ LDL 
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMGPNE-MPILFPFAAQIRKLDLL 301

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229
           +  L + ++   +    +L    L+  ++        L      L  L +        + 
Sbjct: 302 YALLETEDHCTLIQKCPNL--EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 230 SSLLNLNSS---------NSLEVIDLTENNLTN-------SVYPWLFNVSSSLVDRISLP 273
                ++             LE + +  +++TN       +    L +    L+DR    
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 274 SNQ-LQGSIPEAFGRMVSLRYLDLSSNEL----RGIPKFLGNMC-GLKILYLSGKELKGQ 327
           ++  L   +         LR       +      G+  ++G     ++ + L      G+
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGY---VGE 475

Query: 328 LSEFIQDLSSGCTKNSLEWLHLSSNEIT--GSMPNLGEFSSLKQLNLENNLLNGTIHKSI 385
             E + + S GC    L+ L +     +       + +  SL+ L ++    + T    +
Sbjct: 476 SDEGLMEFSRGCPN--LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533

Query: 386 GQ---LFKLEMLKLNG 398
                 + +E++    
Sbjct: 534 QMARPYWNIELIPSRR 549

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 103 KITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSR 162
           K+   L  L+   +L LS NN     I   L  +  L  L L        I +       
Sbjct: 39  KMDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKK-IENLDAVADT 94

Query: 163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSL 219
           L+ L +S+N +    +L  +  L +L  LY+  N ++N+   +  L+ L  L  L L
Sbjct: 95  LEELWISYNQI---ASLSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
           L      +  +   L  +   K L LS   +     E I  L SG     L  L L  N 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSL-SGMEN--LRILSLGRNL 81

Query: 354 ITGSMPNLGE-FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSN 412
           I   + NL     +L++L +  N +  ++   I +L  L +L ++ N +         + 
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 413 LSRLAALDLADNSLTLEFSHDWIPP 437
           L +L  L LA N L  ++  +    
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
           +   L  L   + L LS NN+    +L     + +L  L L  N +    N   L +   
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIKKIEN---LDAVAD 93

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
           +L  L +    +     +SL  +    +L V+ ++ N +TN
Sbjct: 94  TLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKITN 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 29/144 (20%)

Query: 236 NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLD 295
                +E +D T + L                  ++L +N ++  I  +   M +LR L 
Sbjct: 32  GMIPPIEKMDATLSTLKA-------------CKHLALSTNNIE-KI-SSLSGMENLRILS 76

Query: 296 LSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS--SGCTKNSLEWLHLSSNE 353
           L  N ++ I         L+ L++S  +        I  LS         L  L++S+N+
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQ--------IASLSGIEKLVN--LRVLYMSNNK 126

Query: 354 IT--GSMPNLGEFSSLKQLNLENN 375
           IT  G +  L     L+ L L  N
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS---AEFAGPIPHQLGNLSRLQ 164
           L  +++L  L L RN      I         L  L +S    A  +G     +  L  L+
Sbjct: 66  LSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLR 118

Query: 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQ--------LLSKLHSLTT 216
            L +S N + +   +D L+ L  L  L L  N L N              ++ +L +L  
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 217 L 217
           L
Sbjct: 179 L 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 40/157 (25%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
             L LS N     IS L  + N L  L L  NL+  K+ +     D+L  L ++ N    
Sbjct: 51  KHLALSTNNIE-KISSLSGMEN-LRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IA 106

Query: 582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG---LV 638
            +      +  + +L                 ++L +S+NK+      EI  L     L 
Sbjct: 107 SLSG----IEKLVNL-----------------RVLYMSNNKITN--WGEIDKLAALDKLE 143

Query: 639 ALNLSRNNLTGQITPK----------IGQLKSLDFLD 665
            L L+ N L                 + +L +L  LD
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 346 WLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
            LH     I      L    + K L L  N +   I  S+  +  L +L L  N +  + 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIKKI- 85

Query: 406 SEALFSNLSRLAALDLADNSLT 427
            E L +    L  L ++ N + 
Sbjct: 86  -ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 569 LVILNLANNNFFGKIPNSMGFLHNIRSLSL-YNR-SQYEYKSTLGLVKILDLSSNKLGGG 626
            V L+        K+  ++  L   + L+L  N   +    S +  ++IL L  N +   
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI--- 82

Query: 627 VPKEIMDLVGLVA----LNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF--FGGIPSSLS 680
             K+I +L  +      L +S N +   ++  I +L +L  L +S N+   +G I   L+
Sbjct: 83  --KKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLA 137

Query: 681 QLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPEL 719
            L  L  + L+ N L            +   V    P L
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 323 ELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIH 382
            L    S   +          LE+L   +  +T S+ NL + + LK+L L +N ++G + 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 383 KSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
               +   L  L L+GN +  + +      L  L +LDL +  +T
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 101 RGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNL 160
            GK+     + + L +L       +  SI   L  L KL  L LS    +G +       
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT--SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTL 217
             L  L+LS N +     ++ L  L +L  L L   +++N ++    +   L  LT L
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
             LD S +    +         L+ L      L       I +L      N L+ L LS 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPK---LNKLKKLELSD 73

Query: 352 NEITGSMPNLGE-FSSLKQLNLENNLLNGTIH-KSIGQLFKLEMLKLNGN 399
           N ++G +  L E   +L  LNL  N +      + + +L  L+ L L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG- 581
            L+      + SI+ L  L N+L  L+LS+N +SG L     +  +L  LNL+ N     
Sbjct: 46  FLSTINVGLT-SIANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 582 KIPNSMGFLHNIRSLSLYN 600
                +  L N++SL L+N
Sbjct: 104 STIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
             S ++ L L  +    G+          L +L      L++ +N    L KL+ L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKLKKLE 70

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
           L    +   +           +L  ++L+ N + +
Sbjct: 71  LSDNRVSGGLEVLAEKC---PNLTHLNLSGNKIKD 102

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 101 RGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNL 160
            GKI     +  +L +L L        S+   L  L KL  L LS     G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI--SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTL 217
             L  L+LS N L     L+ L  L  L  L L   +++N ++    +   L  LT L
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 310 NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQ 369
               ++ L L   +        I+ L++      LE+L L +  +  S+ NL +   LK+
Sbjct: 22  TPAAVRELVLDNCKSN---DGKIEGLTAEFVN--LEFLSLINVGLI-SVSNLPKLPKLKK 75

Query: 370 LNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           L L  N + G +     +L  L  L L+GN L  + +      L  L +LDL +  +T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
             LD   +    I         L+ L L            +  +S+      L+ L LS 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--------LISVSNLPKLPKLKKLELSE 80

Query: 352 NEITGSMPNLGE-FSSLKQLNLENNLLNGTIH-KSIGQLFKLEMLKLNGN 399
           N I G +  L E   +L  LNL  N L      + + +L  L+ L L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 155 HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214
            +    + ++ L L       G+     +   +L +L L    L + SN    L KL  L
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKL 73

Query: 215 TTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
             L L    +   +      L    +L  ++L+ N L +
Sbjct: 74  KKLELSENRIFGGLDMLAEKL---PNLTHLNLSGNKLKD 109

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 153 IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212
             H L     L  L +          L  L  L  L  L +  + L   +          
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--DAFHFTP 80

Query: 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252
            L+ L+L    L  +   ++  L    SL+ + L+ N L 
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHK-SIGQLFKLEMLK 395
             C  +    L  + +    S+ +L    +L +L +EN      +    +  L +L  L 
Sbjct: 3   DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT 62

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLG----HCKMG 451
           +  + L   ++   F    RL+ L+L+ N+L    S   +    L  + L     HC   
Sbjct: 63  IVKSGL-RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 452 PRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLR 495
            R+ +  + +         L                 VP L ++
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQ 164

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 280 SIPEAFGRMVSLRYLDLSSN-ELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSS 337
                     +L  L + +   L+ +    L  +  L+ L +    L      F+   + 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-----RFVAPDAF 76

Query: 338 GCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN 378
             T   L  L+LS N +        +  SL++L L  N L+
Sbjct: 77  HFTPR-LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
            SL +L  + +L  + +        +          L   +++  + L+   P+AF    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLRFVAPDAFHFTP 80

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSG 321
            L  L+LS N L  +         L+ L LSG
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             L   ++LT L +             L  LG+L  L +  +      P       RL  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDL 198
           L+LSFN L S      +  L SL  L L  N L
Sbjct: 85  LNLSFNALESLSW-KTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 627 VPKEIMDLVGLVALNLSRNNLTGQITPK-IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
               +     L  L +        +  + +  L  L  L + ++      P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 686 SVMDLSYNNLSGKIPLGT-QLQSFNELVYAGNPELC 720
           S ++LS+N L   +   T Q  S  ELV +GNP  C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR----GIPKFLGNMCGLKILYLSGKE 323
             + L  NQ+    P  F  +++L+ L L SN+L     G+   L     L +L L   +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQ 99

Query: 324 LKGQLSEFIQDLSSGC----TKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLN 378
           L          L S          L+ L +  N++T  +P  +   + L  L L+ N L 
Sbjct: 100 LTV--------LPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 379 GTIHKSIGQLFKLEMLKLNGN 399
              H +  +L  L    L GN
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 45/167 (26%)

Query: 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL---PPIIPSSLLNLNSSNSLEVIDL 246
            LYL  N ++     V     L +L  L L S  L   P  +  SL  L           
Sbjct: 44  ILYLHDNQITKLEPGV--FDSLINLKELYLGSNQLGALPVGVFDSLTQL----------- 90

Query: 247 TENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIP 305
                                  + L +NQL   +P   F R+V L+ L +  N+L  +P
Sbjct: 91  ---------------------TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN 352
           + +  +  L  L L   +LK         LS      SL   +L  N
Sbjct: 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLS------SLTHAYLFGN 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 62/373 (16%), Positives = 116/373 (31%), Gaps = 41/373 (10%)

Query: 87  KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLS--RNNFSGSSIPEFLGSLGKLSYLGL 144
           +LDL+    D       ++        L  L++S   +  S S++   +     L  L L
Sbjct: 160 ELDLRESDVDDVSGHW-LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 145 SSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN- 203
           + A     +   L    +L+ L        +    D  S LS  +    +L  LS F + 
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTG--GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 204 ----WVQLLSKLHSLTTLSLYSCDL------------PPIIPSSLLNLNSSNSLEVIDLT 247
                  + S    LTTL+L    +            P +    +L+      LEV+  T
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL--RGIP 305
             +L          V  S    +       +  +         L  +     ++    + 
Sbjct: 337 CKDLRE------LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390

Query: 306 KFLGNMCGLKILYLSGKELKG--QLSEFIQD-----LSSGCTKNSLEWLHLSSNEITGSM 358
               N   +    L   E K    L+    D     +   C    L  L LS        
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD--LRRLSLSGLLTDKVF 448

Query: 359 PNLGEFS-SLKQLNLEN-NLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416
             +G ++  ++ L++      +  +H  +     L  L++     G     A  S L  +
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508

Query: 417 AALDLADNSLTLE 429
            +L ++  S++  
Sbjct: 509 RSLWMSSCSVSFG 521

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 41/323 (12%), Positives = 98/323 (30%), Gaps = 43/323 (13%)

Query: 109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDL 168
            +++      +   N    S    +    K+  + L              + +    +  
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK----------PHFADFNLVPD 87

Query: 169 SFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK-LHSLTTLSLYSCDLPPI 227
            +            S  + L  + L    +++    ++L++K   +   L L SC+    
Sbjct: 88  GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEG--F 143

Query: 228 IPSSLLNL-NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG 286
               L  +  +  +L+ +DL E+++ +    WL +   +                     
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT------------------- 184

Query: 287 RMVSLRYLDLSSNELR----GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
              SL  L++S          + + +     LK L L+      +L+  +Q         
Sbjct: 185 ---SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 343 SLEWLHLSSNE-ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
           +  +      +  +G    L     L+ L+   + +   +        +L  L L+  ++
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

Query: 402 GGVISEALFSNLSRLAALDLADN 424
                  L     +L  L + D 
Sbjct: 302 QSYDLVKLLCQCPKLQRLWVLDY 324

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 50/359 (13%), Positives = 89/359 (24%), Gaps = 109/359 (30%)

Query: 107 ALLKLQHLTYLDLSRNNFS---GSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           +   L  L  L+L+    +    + +   LGS                           L
Sbjct: 67  SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGS-----------------------GRHAL 103

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
             ++L+   L        L        L L LN L   +   + L  L     L    C 
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--CKDLRDL-----LLHDQC- 155

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
                            +  + L+ N LT +    L            L  N        
Sbjct: 156 ----------------QITTLRLSNNPLTAAGVAVLMEG---------LAGNT------- 183

Query: 284 AFGRMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG 338
                 S+ +L L    L       +   L     L+ L ++              L+  
Sbjct: 184 ------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG---DTAALALARA 234

Query: 339 CTKN-SLEWLHLSSNEITGS--------MPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF 389
             ++ SLE LHL  NE++                 + +     E   ++      + ++ 
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

Query: 390 K---------------LEMLKLNGNSLG----GVISEALFSNLSRLAALDLADNSLTLE 429
           +               L +  L  +          ++ L      + AL     S    
Sbjct: 295 RNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVE-GEVRALLEQLGSSGSP 352

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 19/123 (15%)

Query: 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL---PPIIPSSLLNLNSSNSLEVIDL 246
           YL L+ N L +  N V    +L SLT L L    L   P  + + L +L        ++L
Sbjct: 32  YLDLETNSLKSLPNGV--FDELTSLTQLYLGGNKLQSLPNGVFNKLTSL------TYLNL 83

Query: 247 TENNLTNSVYPWLFNVSSSLV--DRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRG 303
           + N L  S+   +F+    L     ++L +NQLQ S+P+  F ++  L+ L L  N+L+ 
Sbjct: 84  STNQLQ-SLPNGVFD---KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138

Query: 304 IPK 306
           +P 
Sbjct: 139 VPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS-- 221
            +LDL  N+L S  N      L+SL  LYL  N L +  N V   +KL SLT L+L +  
Sbjct: 31  TYLDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTNQ 87

Query: 222 -CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGS 280
              LP  +   L  L      + + L  N L  S+   +F+  + L   + L  NQL+ S
Sbjct: 88  LQSLPNGVFDKLTQL------KELALNTNQLQ-SLPDGVFDKLTQL-KDLRLYQNQLK-S 138

Query: 281 IPE-AFGRMVSLRYLDLSSN 299
           +P+  F R+ SL+Y+ L  N
Sbjct: 139 VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 35/160 (21%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ 327
             + L +N L+      F  + SL  L L  N+L+ +P              +G  +  +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP--------------NG--VFNK 74

Query: 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSL---KQLNLENNLLNGTIHKS 384
           L+              L +L+LS+N++  S+PN G F  L   K+L L  N L       
Sbjct: 75  LTS-------------LTYLNLSTNQLQ-SLPN-GVFDKLTQLKELALNTNQLQSLPDGV 119

Query: 385 IGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
             +L +L+ L+L  N L  V     F  L+ L  + L DN
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDN 158

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 48/221 (21%), Positives = 77/221 (34%), Gaps = 33/221 (14%)

Query: 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166
                  + ++DLS +    S++   L    KL  L L     + PI + L   S L  L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 167 DLSFNNLFSGENLDWL-SHLSSLIYLYL-DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL 224
           +LS  + FS   L  L S  S L  L L    D +     V +     ++T L+L     
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR- 206

Query: 225 PPIIPSSLLNLNSS-NSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
             +  S L  L     +L  +DL+              + +                  +
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLS----------DSVMLKNDCF---------------Q 241

Query: 284 AFGRMVSLRYLDLSSNEL---RGIPKFLGNMCGLKILYLSG 321
            F ++  L++L LS         +   LG +  LK L + G
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFG 281

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 27/205 (13%), Positives = 63/205 (30%), Gaps = 38/205 (18%)

Query: 109 LKLQHLTYLDLSRNNFSG---SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
            +      +D      S      +   L ++  L+ L +              NL  L+ 
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 166 LDLSFNNLFSGENLDWL--SHLSSLIYLYLDLNDLSNFSN-----WVQLLSKLH--SLTT 216
           +    +       ++ +  S L +L  L L +       +     +  L SK    +L  
Sbjct: 201 I----SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256

Query: 217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ 276
           L +   +   ++    L  +    LE +D++   LT+                       
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR------------------- 297

Query: 277 LQGSIPEAFGRMVSLRYLDLSSNEL 301
               + +   ++  L+++++  N L
Sbjct: 298 ---LLLDHVDKIKHLKFINMKYNYL 319

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 42/159 (26%)

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
             L L+ N L    +      L  L+ L L  N L+              +  L L    
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASHIQELQLG--- 86

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
                                   EN +   +   +F     L   ++L  NQ+   +  
Sbjct: 87  ------------------------ENKIK-EISNKMFLGLHQL-KTLNLYDNQIS-CVMP 119

Query: 284 -AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSG 321
            +F  + SL  L+L+SN            C   + + + 
Sbjct: 120 GSFEHLNSLTSLNLASNPFN---------CNCHLAWFAE 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 19/106 (17%)

Query: 225 PPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE- 283
           P  IP     L          L +N L       LF     L  ++ L  NQL   I   
Sbjct: 24  PRDIPLHTTEL---------LLNDNELGRISSDGLFGRLPHL-VKLELKRNQLT-GIEPN 72

Query: 284 AFGRMVSLRYLDLSSNELRGIPK--F--LGNMCGLKILYLSGKELK 325
           AF     ++ L L  N+++ I    F  L     LK L L   ++ 
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQ---LKTLNLYDNQIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           LP  IP  +  L          L  N  T    P   +    L   I L +N++     +
Sbjct: 25  LPKGIPRDVTEL---------YLDGNQFTLV--PKELSNYKHLT-LIDLSNNRISTLSNQ 72

Query: 284 AFGRMVSLRYLDLSSNELRGIPK--F--LGNMCGLKILYLSGKELK 325
           +F  M  L  L LS N LR IP   F  L +   L++L L G ++ 
Sbjct: 73  SFSNMTQLLTLILSYNRLRCIPPRTFDGLKS---LRLLSLHGNDIS 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 22/117 (18%)

Query: 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK--F--LGNMCGLKILYLSGKE 323
            R+ L SN+LQ      F ++  L  L LS N+++ +P   F  L     L ILYL   +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK---LTILYLHENK 87

Query: 324 LKGQLSEFIQDLSSGCTKN--SLEWLHLSSNEITGSMPNLGEFSSLKQLN---LENN 375
           L        Q L +G       L+ L L +N++  S+P+ G F  L  L    L  N
Sbjct: 88  L--------QSLPNGVFDKLTQLKELALDTNQLK-SVPD-GIFDRLTSLQKIWLHTN 134

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 290 SLRYLDLSSNE------LRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN- 342
            L  ++L++        L+   + L     +K   + G             L+     N 
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN---DPVAFALAEMLKVNN 93

Query: 343 SLEWLHLSSNEITGS-MPNLGEF----SSLKQLNLENN--LLNGTIHKSIGQLFK----L 391
           +L+ L++ SN I+GS +  L E     +SL +L ++N    L   +   I  + +    L
Sbjct: 94  TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL 153

Query: 392 EMLKLNGNSLGG--VISEALFSNLSRL 416
                +    G     S A+ +N   +
Sbjct: 154 LKFGYHFTQQGPRLRASNAMMNNNDLV 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.3

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.3e-89  Score=805.76  Aligned_cols=654  Identities=30%  Similarity=0.456  Sum_probs=502.9

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCcee---ccccccC
Q 047152           34 TRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGK---ITPALLK  110 (776)
Q Consensus        34 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~---~~~~l~~  110 (776)
                      ..+.++|++||++||+++.||. .+++|+   .+.+||+|+||+|+  +|+|++|+|++     .++.|.   +++++.+
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~-----~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS-----KPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT-----SCCCEEHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC-----CCcCCccCccChhHhc
Confidence            3457889999999999999998 899997   47799999999997  69999999999     678888   8888888


Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc--cCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152          111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPH--QLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL  188 (776)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  188 (776)
                      +++|+.++++.+.+.  .+|..++++++|++|||++|.++|.+|.  .++++++|++|++++|.+.+......+.++++|
T Consensus        76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            888888888888765  3567788888888888888888887887  788888888888888887652233334778888


Q ss_pred             cEEEccCCCCCCcchhhHh---hcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCC
Q 047152          189 IYLYLDLNDLSNFSNWVQL---LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSS  265 (776)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~  265 (776)
                      ++|++++|.+++..  +..   +.++++|++|++++|.+.+..+.  ..+   ++|++|++++|++.+.+|. +.++++ 
T Consensus       154 ~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l---~~L~~L~Ls~n~l~~~~~~-l~~l~~-  224 (768)
T 3rgz_A          154 EVLDLSANSISGAN--VVGWVLSDGCGELKHLAISGNKISGDVDV--SRC---VNLEFLDVSSNNFSTGIPF-LGDCSA-  224 (768)
T ss_dssp             SEEECCSSCCEEET--HHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC---TTCCEEECCSSCCCSCCCB-CTTCCS-
T ss_pred             CEEECCCCccCCcC--ChhhhhhccCCCCCEEECCCCcccccCCc--ccC---CcCCEEECcCCcCCCCCcc-cccCCC-
Confidence            88888888887642  333   67788888888888877766553  444   7788888888888776666 777777 


Q ss_pred             CcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhc-cCCCcCCC
Q 047152          266 LVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDL-SSGCTKNS  343 (776)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~~~~~~~  343 (776)
                       |++|++++|++++.+|..++.+++|++|++++|.+++ +|..  .+++|++|++++|.+++.+|..+... +      +
T Consensus       225 -L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~------~  295 (768)
T 3rgz_A          225 -LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD------T  295 (768)
T ss_dssp             -CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT------T
T ss_pred             -CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC------c
Confidence             8888888888887778888888888888888887776 5443  67778888888887777777666554 4      7


Q ss_pred             ccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhc-ccCCCCCcEEECCCccccccccHHhhhCCC-CCcEEE
Q 047152          344 LEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKS-IGQLFKLEMLKLNGNSLGGVISEALFSNLS-RLAALD  420 (776)
Q Consensus       344 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~  420 (776)
                      |++|++++|.+++.+|. ++.+++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|. .+.+++ +|++|+
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~  374 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLD  374 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEE
T ss_pred             CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEE
Confidence            78888888877776665 777778888888888777766655 77777888888888877777776 455555 777777


Q ss_pred             CCCCccceecCCCCCC--CCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccC
Q 047152          421 LADNSLTLEFSHDWIP--PFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDI  498 (776)
Q Consensus       421 Ls~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~  498 (776)
                      +++|++++..+..+..  ..+|++|++++|++++.+|.++...           ++|++|++++|+++|.+|. .+....
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-----------~~L~~L~Ls~N~l~~~~p~-~l~~l~  442 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-----------SELVSLHLSFNYLSGTIPS-SLGSLS  442 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-----------TTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-----------CCCCEEECcCCcccCcccH-HHhcCC
Confidence            7777777777766655  6677777777777776666665543           3466666666666666665 444444


Q ss_pred             CCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEecc
Q 047152          499 SGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLA  575 (776)
Q Consensus       499 ~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  575 (776)
                      .++.+++++|.++|.+|..   +++|++|++++|++++.+|..+..+++|++|+|++|++++.+|.+++.+++|++|+++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            4566666666666665553   4556666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcccccCCccccccCCCcEEecCCCccc---------------------------------------------------
Q 047152          576 NNNFFGKIPNSMGFLHNIRSLSLYNRSQY---------------------------------------------------  604 (776)
Q Consensus       576 ~N~l~~~~p~~~~~l~~L~~L~l~~~~~~---------------------------------------------------  604 (776)
                      +|+++|.+|..++.+++|++|+++++...                                                   
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            66666666666666666666666553221                                                   


Q ss_pred             -----------------------ccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCC
Q 047152          605 -----------------------EYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL  661 (776)
Q Consensus       605 -----------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  661 (776)
                                             ..+..+++|++|||++|+++|.+|.++++++.|+.|+|++|+++|.+|..++++++|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                   112345789999999999999999999999999999999999999999999999999


Q ss_pred             CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 047152          662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDED  732 (776)
Q Consensus       662 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l~~~c~~~~  732 (776)
                      ++|||++|+++|.+|..+.++++|++||+++|+++|.||.++++.+|...+|.|||++||.|+. .|....
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999987 896543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-67  Score=621.25  Aligned_cols=560  Identities=29%  Similarity=0.368  Sum_probs=450.7

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCCc--cccCCCCCCEEecCCCCCCCCCCccC-CCCCCCCEEeccCCCCCCCCCch
Q 047152          104 ITPALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQFLDLSFNNLFSGENLD  180 (776)
Q Consensus       104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~  180 (776)
                      ++..++++++|++|||++|.+++. +|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|++.+ ..+.
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  169 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVV  169 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCCh
Confidence            447788888888888888888874 777  78888888888888888888888766 788888888888888764 3333


Q ss_pred             h---hccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchh
Q 047152          181 W---LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYP  257 (776)
Q Consensus       181 ~---l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~  257 (776)
                      .   +.++++|++|++++|.+++...    +.++++|++|++++|.+.+.+|. ++++   ++|++|++++|++++.+|.
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l---~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDC---SALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTC---CSCCEEECCSSCCCSCHHH
T ss_pred             hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccC---CCCCEEECcCCcCCCcccH
Confidence            3   6788888888888888876432    37788888888888888887776 6666   8888888888888888888


Q ss_pred             hHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cchhhccc-CCCcEEeccCCcCCCccchHHhhc
Q 047152          258 WLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNM-CGLKILYLSGKELKGQLSEFIQDL  335 (776)
Q Consensus       258 ~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l  335 (776)
                      .+.++++  |++|++++|++++.+|..  .+++|++|++++|.+++ +|..+... ++|++|++++|.+++.+|..+..+
T Consensus       242 ~l~~l~~--L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          242 AISTCTE--LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             HTTTCSS--CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             HHhcCCC--CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            8888888  888888888888777765  77888888888888885 77777664 888888888888888888888887


Q ss_pred             cCCCcCCCccEEEcccccccccCCC--ccCCCCCCEEeccCccccccchhcccCCC-CCcEEECCCccccccccHHhhhC
Q 047152          336 SSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLF-KLEMLKLNGNSLGGVISEALFSN  412 (776)
Q Consensus       336 ~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~  412 (776)
                      +      +|++|++++|.+++.+|.  +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|. .+..
T Consensus       318 ~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~  390 (768)
T 3rgz_A          318 S------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQ  390 (768)
T ss_dssp             T------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTC
T ss_pred             C------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhh
Confidence            7      788888888888876664  77888888888888888888888887776 788888888888877776 3444


Q ss_pred             --CCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152          413 --LSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP  490 (776)
Q Consensus       413 --l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p  490 (776)
                        +++|++|++++|++++..|..+..+++|++|++++|++++.+|..+...           ++|++|++++|.++|.+|
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----------~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-----------SKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-----------TTCCEEECCSSCCCSCCC
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-----------CCCCEEECCCCcccCcCC
Confidence              6778888888888888888888888888888888888877777665543           457788888888887777


Q ss_pred             cccccccCCCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCC
Q 047152          491 DLSLRFDISGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFD  567 (776)
Q Consensus       491 ~~~~~~~~~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  567 (776)
                      . .+.....++.+++++|+++|.+|..   +++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|..+.+++
T Consensus       460 ~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          460 Q-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             H-HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            7 5555555678888888888777764   56778888888888877787777788888888888888888888888888


Q ss_pred             CCcEEeccCCcccccCCcc-------------------------------------------------------------
Q 047152          568 SLVILNLANNNFFGKIPNS-------------------------------------------------------------  586 (776)
Q Consensus       568 ~L~~L~Ls~N~l~~~~p~~-------------------------------------------------------------  586 (776)
                      +|++|++++|+++|.+|..                                                             
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            8888888888777766654                                                             


Q ss_pred             ---------ccccCCCcEEecCCCcc----cccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc
Q 047152          587 ---------MGFLHNIRSLSLYNRSQ----YEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP  653 (776)
Q Consensus       587 ---------~~~l~~L~~L~l~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  653 (776)
                               ++.+++|++|+++++.+    +..++.++.|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|.
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence                     44467889999998654    45567889999999999999999999999999999999999999999999


Q ss_pred             cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCccee
Q 047152          654 KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG  697 (776)
Q Consensus       654 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  697 (776)
                      .++.+++|++||+++|+++|.+|.. ..+.++....+.+|+--|
T Consensus       699 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred             HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence            9999999999999999999999975 345667777888897544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.1e-60  Score=554.67  Aligned_cols=573  Identities=21%  Similarity=0.203  Sum_probs=465.1

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152          104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS  183 (776)
Q Consensus       104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  183 (776)
                      +|..+.  +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+.. .....|+
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~   94 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFA   94 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhc
Confidence            454443  7899999999999875 56679999999999999999998888889999999999999999874 3444689


Q ss_pred             cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc-
Q 047152          184 HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV-  262 (776)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-  262 (776)
                      ++++|++|++++|.+++++  +..++++++|++|++++|.+++..+..+.++   ++|++|++++|.+++..+..+... 
T Consensus        95 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL---ENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC---TTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             cCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCchhhccc---ccCCEEEccCCcccccCHHHhhccc
Confidence            9999999999999998753  3568899999999999999999888888877   899999999999998877776544 


Q ss_pred             -CCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cchhh---cccCCCcEEeccCCcCCCccchHHhhccC
Q 047152          263 -SSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFL---GNMCGLKILYLSGKELKGQLSEFIQDLSS  337 (776)
Q Consensus       263 -~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  337 (776)
                       ++  |+.|++++|++++..|..+..+++|+.|+++++.+.. ....+   ...++|++|++++|.+++..+..+..+..
T Consensus       170 ~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~  247 (680)
T 1ziw_A          170 NSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW  247 (680)
T ss_dssp             TCE--ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred             ccc--ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence             56  9999999999999999999999999999999988765 21111   13478999999999999998888887751


Q ss_pred             CCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccc--------cHH
Q 047152          338 GCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI--------SEA  408 (776)
Q Consensus       338 ~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~  408 (776)
                          ++|++|++++|++++..+. ++.+++|++|++++|.+++..|..+..+++|++|++++|...+.+        +..
T Consensus       248 ----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          248 ----TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             ----SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ----CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence                1499999999999988766 889999999999999999988999999999999999988654322        222


Q ss_pred             hhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhh--ccCcccEEEcccccCc
Q 047152          409 LFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD--LTHQRMLLNLSSNQMR  486 (776)
Q Consensus       409 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~--~~~~L~~L~l~~n~l~  486 (776)
                      .|..+++|++|++++|.+++..+..+..+++|+++++++|.+.....         +...+.  ..++++.|++++|+++
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l---------~~~~f~~~~~~~L~~L~L~~n~l~  394 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL---------TNETFVSLAHSPLHILNLTKNKIS  394 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE---------CTTTTGGGTTSCCCEEECTTSCCC
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc---------chhhhcccccCcCceEECCCCCCC
Confidence            57789999999999999999888889999999999999998643221         111111  1247999999999999


Q ss_pred             ccCCcccccccCCCCeEeccCCcccccCCC----CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccc--ccCC
Q 047152          487 GKVPDLSLRFDISGPGIDISSNHFEGPIPP----LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS--GKLP  560 (776)
Q Consensus       487 g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p  560 (776)
                      +..|. .+.....++.+++++|.+++.+|.    .+++|++|++++|++++..+..+..+++|++|++++|.++  +.+|
T Consensus       395 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          395 KIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             EECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred             eEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence            88776 566666679999999999887764    3678999999999999988888999999999999999987  5788


Q ss_pred             hhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc------------ccccccccEEEccCCCCccCCc
Q 047152          561 DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY------------KSTLGLVKILDLSSNKLGGGVP  628 (776)
Q Consensus       561 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~p  628 (776)
                      ..+.++++|++|++++|++++..|..+..+++|++|+++++.+...            +..+++|++|+|++|+++...+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            8899999999999999999988888899999998888877665433            3556777788888887774444


Q ss_pred             hhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc-CCCCCCeeeCCCCcceecCCC
Q 047152          629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS-QLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       629 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      ..|+++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+. .+++|+.|++++|++.|.++.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            4577777888888888888765555567777888888888888777666665 567777888888888777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-57  Score=533.74  Aligned_cols=583  Identities=20%  Similarity=0.184  Sum_probs=495.5

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      +.+|.+++.++  .+|..+.  +++++|++++|.+++..+..|+++++|++|++++|.+.. ..+..++++++|++|+++
T Consensus         7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred             CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence            56888888887  4787665  799999999999998777889999999999999999976 567789999999999999


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                      +|.++.++  +..++++++|++|++++|++.+..+..++++   ++|++|++++|.+++..+..+.++++  |++|++++
T Consensus        82 ~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~  154 (680)
T 1ziw_A           82 HNELSQLS--DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ---KNLITLDLSHNGLSSTKLGTQVQLEN--LQELLLSN  154 (680)
T ss_dssp             SSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCSCTTTTC---TTCCEEECCSSCCSCCCCCSSSCCTT--CCEEECCS
T ss_pred             CCccCccC--hhhhccCCCCCEEECCCCccCccChhHcccc---CCCCEEECCCCcccccCchhhccccc--CCEEEccC
Confidence            99999854  2468999999999999999999888889888   99999999999999988888889999  99999999


Q ss_pred             CccccCcchhhc--CCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          275 NQLQGSIPEAFG--RMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       275 n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                      |.+++..+..+.  .+++|++|++++|.+++ .|..+..+.+|+.++++++.+.+.....+....   ...+|++|++++
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---~~~~L~~L~L~~  231 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---ANTSIRNLSLSN  231 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---TTSCCCEEECTT
T ss_pred             CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh---hhccccEEEccC
Confidence            999988887765  56899999999999999 667899999999999999988754333322110   112899999999


Q ss_pred             ccccccCCC-ccCCCC--CCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152          352 NEITGSMPN-LGEFSS--LKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       352 n~l~~~~~~-l~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      |.+++..|. +..++.  |++|++++|.+++..|..+..+++|++|++++|.+++..|. .|.++++|++|++++|...+
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhc
Confidence            999988776 766654  99999999999988889999999999999999999987776 68999999999999876543


Q ss_pred             e---------cCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCccc-CCcccccc--
Q 047152          429 E---------FSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGK-VPDLSLRF--  496 (776)
Q Consensus       429 ~---------~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~-~p~~~~~~--  496 (776)
                      .         ....+..+++|+++++++|++.+..|..+..           +++|++|++++|.+.+. ++...+..  
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~Ls~n~~~~~~l~~~~f~~~~  379 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LINLKYLSLSNSFTSLRTLTNETFVSLA  379 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-----------CTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred             ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-----------ccCCcEEECCCCchhhhhcchhhhcccc
Confidence            2         2236778899999999999998765554443           46799999999987543 22212221  


Q ss_pred             cCCCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEE
Q 047152          497 DISGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL  572 (776)
Q Consensus       497 ~~~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  572 (776)
                      ...++.+++++|++++..|..   +++|++|++++|++++.++ ..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus       380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  459 (680)
T 1ziw_A          380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL  459 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred             cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence            134699999999999987765   6789999999999998665 688899999999999999999889999999999999


Q ss_pred             eccCCccc--ccCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCc--------hhhhccccCC
Q 047152          573 NLANNNFF--GKIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVP--------KEIMDLVGLV  638 (776)
Q Consensus       573 ~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~  638 (776)
                      ++++|.+.  +.+|..+..+++|++|+++++.+...    +..+++|++|++++|++++..+        ..++++++|+
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~  539 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH  539 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence            99999987  67899999999999999999876544    4568999999999999986422        2478999999


Q ss_pred             EEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-C-cccccccccccCC
Q 047152          639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-T-QLQSFNELVYAGN  716 (776)
Q Consensus       639 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gN  716 (776)
                      +|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..|.. . .+.++..+.+.||
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            9999999999544456899999999999999999777777899999999999999999876643 2 4678888999999


Q ss_pred             CCCCCCCC
Q 047152          717 PELCGLPL  724 (776)
Q Consensus       717 ~~lc~~~l  724 (776)
                      |+.|+|+.
T Consensus       620 ~~~c~c~~  627 (680)
T 1ziw_A          620 PFDCTCES  627 (680)
T ss_dssp             CCCBCCCC
T ss_pred             CcccCCcc
Confidence            99999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-55  Score=523.88  Aligned_cols=551  Identities=25%  Similarity=0.249  Sum_probs=366.9

Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCC-CccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI-PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      .++|++|||++|.+++. .|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.. ..+..|+++++|+
T Consensus        23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~  100 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLF  100 (844)
T ss_dssp             CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSCC
T ss_pred             CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcccC
Confidence            35666666666666654 5566666666666666666555444 5566666666666666666653 3455666666666


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc--CCCC
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV--SSSL  266 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~--~~~~  266 (776)
                      +|+|++|.+++.......++++++|++|++++|.+.+..+ ..++++   ++|++|++++|.+++..+..+..+  ++  
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L---~~L~~L~Ls~N~i~~~~~~~l~~l~~~~--  175 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL---NSLKSIDFSSNQIFLVCEHELEPLQGKT--  175 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC---SSCCEEEEESSCCCCCCSGGGHHHHHCS--
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC---CCCCEEECCCCcCCeeCHHHcccccCCc--
Confidence            6666666666521111236667777777777777666544 456666   677777777777777666666665  45  


Q ss_pred             cCEEEccCCccccCcchhhcCCCC------CCEEEccCCCCCC-Cchhhcc---cCCCcEEeccCC---------cCCCc
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVS------LRYLDLSSNELRG-IPKFLGN---MCGLKILYLSGK---------ELKGQ  327 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~-ip~~l~~---l~~L~~L~Ls~n---------~l~~~  327 (776)
                      |+.|+++.|.+.+..|..++.+.+      |++|++++|.+++ +|..+..   ..+++.+.++.+         .+.+.
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            777777777777766666655554      7777777777766 5544433   245666666532         22223


Q ss_pred             cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccccc
Q 047152          328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS  406 (776)
Q Consensus       328 ~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  406 (776)
                      ....+..+.    ..+|++|++++|.+.+..+. +..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus       256 ~~~~f~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          256 DQNTFAGLA----RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             GGTTTTTTT----TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             Chhhhhccc----cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence            333333321    12677777777777766555 6677777777777777776667777777777777777777765555


Q ss_pred             HHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCc
Q 047152          407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMR  486 (776)
Q Consensus       407 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~  486 (776)
                      . .|..+++|++|++++|++....+..+..+++|++|++++|.+++. +.               .++++          
T Consensus       332 ~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---------------~~~L~----------  384 (844)
T 3j0a_A          332 S-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---------------IPSIP----------  384 (844)
T ss_dssp             C-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---------------CCSCS----------
T ss_pred             H-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---------------CCCcc----------
Confidence            4 567777777777777777666655666666666666666655421 10               22344          


Q ss_pred             ccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCCh-hhh
Q 047152          487 GKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPD-CWF  564 (776)
Q Consensus       487 g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~  564 (776)
                                     .+++++|+++ .+|....+++.|++++|++++... ..+..+++|++|+|++|++++..+. .+.
T Consensus       385 ---------------~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  448 (844)
T 3j0a_A          385 ---------------DIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS  448 (844)
T ss_dssp             ---------------EEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred             ---------------hhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence                           4444444444 344445678888888888887543 2345688899999999998865443 355


Q ss_pred             CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcC
Q 047152          565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSR  644 (776)
Q Consensus       565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  644 (776)
                      .+++|+.|++++|.+++..+..+               ....+..+++|++|+|++|++++.+|..|.++++|+.|+|++
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  513 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETEL---------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS  513 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCC---------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred             cCCccccccCCCCcccccccccc---------------chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence            67889999999998873332111               011123344558899999999999999999999999999999


Q ss_pred             CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCC
Q 047152          645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL  724 (776)
Q Consensus       645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l  724 (776)
                      |++++..|..+.  ++|+.|||++|++++.+|..+.   +|+.|++++|++.|.++..    .|......+|..+||.+.
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~  584 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPA  584 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGG
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccc
Confidence            999976666655  8999999999999999998764   7899999999999988753    233223356777888887


Q ss_pred             CCCCCCCCCCCCCCC
Q 047152          725 RNKCPDEDSAPSPER  739 (776)
Q Consensus       725 ~~~c~~~~~~~~~~~  739 (776)
                      ...|..++...+...
T Consensus       585 ~~~C~~p~~~~g~~l  599 (844)
T 3j0a_A          585 DIYCVYPDSFSGVSL  599 (844)
T ss_dssp             GCCCSSCSSSCSCCT
T ss_pred             cCccCCchhhCCCcc
Confidence            788987766554433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-55  Score=506.55  Aligned_cols=518  Identities=21%  Similarity=0.198  Sum_probs=391.1

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      ++++|++++|.+++. .|..|+++++|++|+|++|++.+..|..|+++++|++|++++|++.. ..+..++++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEee
Confidence            678888888888865 57788888888888888888887778888888888888888888864 4566788888888888


Q ss_pred             ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC--EE
Q 047152          193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD--RI  270 (776)
Q Consensus       193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~--~L  270 (776)
                      +++|.+++..  +..++++++|++|++++|++.+.....+..+   ++|++|++++|.+++..+..+..+++  ++  .|
T Consensus       112 L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~l~L  184 (606)
T 3t6q_A          112 FIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFPT---EKLKVLDFQNNAIHYLSKEDMSSLQQ--ATNLSL  184 (606)
T ss_dssp             CTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC---TTCCEEECCSSCCCEECHHHHHTTTT--CCSEEE
T ss_pred             ccccCcccCC--cchhccCCcccEEECCCCcccccCcccccCC---cccCEEEcccCcccccChhhhhhhcc--cceeEE
Confidence            8888888753  3457888888999998888887554444445   88889999988888877888888888  77  88


Q ss_pred             EccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC-----CccchHHhhccCCCcCCCcc
Q 047152          271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK-----GQLSEFIQDLSSGCTKNSLE  345 (776)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~~~~~~~L~  345 (776)
                      ++++|.+++..|..+.. .+|++|++++|.  .++..+..+.+++...+....+.     ...+..+..+..    .+|+
T Consensus       185 ~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~----~~L~  257 (606)
T 3t6q_A          185 NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE----MSVE  257 (606)
T ss_dssp             ECTTCCCCEECTTTTTT-CEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG----SEEE
T ss_pred             ecCCCccCccChhHhhh-ccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhc----Ccee
Confidence            88888888877766654 678888888875  45555555555544443332221     122233333321    1588


Q ss_pred             EEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCC
Q 047152          346 WLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN  424 (776)
Q Consensus       346 ~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  424 (776)
                      +|++++|.+++..+. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|. .+..+++|++|++++|
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSC
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCC
Confidence            888888888877766 888888888888888888 6777888888888888888888766554 6788888888888888


Q ss_pred             ccceecCCC-CCCCCCCcEEEccCcCCCCCC--chhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCC
Q 047152          425 SLTLEFSHD-WIPPFQLNTISLGHCKMGPRF--PKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGP  501 (776)
Q Consensus       425 ~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~  501 (776)
                      .+.+.++.. +..+++|++|++++|.+.+..  |..+.           .+++|++|++++|.+.+..|. .+.      
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------~l~~L~~L~l~~n~l~~~~~~-~~~------  397 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-----------NLSHLQSLNLSYNEPLSLKTE-AFK------  397 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-----------TCTTCCEEECCSCSCEEECTT-TTT------
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcc-----------cCCCCCEEECCCCcCCcCCHH-Hhc------
Confidence            887666544 777888888888888875432  22221           233455566555555543332 111      


Q ss_pred             eEeccCCcccccCCCCCCCCcEEEccCCccccCCCc-cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISF-LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                                     .+++|++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.
T Consensus       398 ---------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          398 ---------------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             ---------------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             ---------------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence                           135677777777777766543 3667777888888888877777777777778888888888776


Q ss_pred             cc---CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC
Q 047152          581 GK---IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ  657 (776)
Q Consensus       581 ~~---~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  657 (776)
                      +.   .+..+..++                    +|++|++++|++++..|..|+++++|++|+|++|++++.+|..+.+
T Consensus       463 ~~~~~~~~~~~~l~--------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          463 KGNIQKTNSLQTLG--------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             GGEECSSCGGGGCT--------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             ccccccchhhccCC--------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence            52   223344444                    4488999999999988999999999999999999999999999999


Q ss_pred             cCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152          658 LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       658 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      +++| +|++++|++++.+|..+..+++|++|++++|++.|.++..
T Consensus       523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            9999 9999999999988988999999999999999999988743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-53  Score=493.58  Aligned_cols=532  Identities=20%  Similarity=0.176  Sum_probs=412.9

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152          116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL  195 (776)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  195 (776)
                      +++.++..++  .+|..+.  +++++|++++|.+++..|..|+++++|++|++++|++.. ..+..|+++++|++|++++
T Consensus        16 ~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           16 TYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             EEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred             eEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCC
Confidence            3455555555  4676665  479999999999998889999999999999999999875 5677899999999999999


Q ss_pred             CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152          196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN  275 (776)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n  275 (776)
                      |.+++.  .+..++++++|++|++++|.+++..+..+.++   ++|++|++++|++.+..++.+..+++  |++|++++|
T Consensus        91 n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n  163 (606)
T 3t6q_A           91 NPLIFM--AETALSGPKALKHLFFIQTGISSIDFIPLHNQ---KTLESLYLGSNHISSIKLPKGFPTEK--LKVLDFQNN  163 (606)
T ss_dssp             CCCSEE--CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC---TTCCEEECCSSCCCCCCCCTTCCCTT--CCEEECCSS
T ss_pred             Cccccc--ChhhhcccccccEeeccccCcccCCcchhccC---CcccEEECCCCcccccCcccccCCcc--cCEEEcccC
Confidence            999874  35789999999999999999999878888888   99999999999999855444555778  999999999


Q ss_pred             ccccCcchhhcCCCCCC--EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152          276 QLQGSIPEAFGRMVSLR--YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE  353 (776)
Q Consensus       276 ~l~~~~p~~l~~l~~L~--~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~  353 (776)
                      .+++..|..++.+++|+  +|++++|.+++++.......+|++|++++|.   ..+..+..+.      .++...+....
T Consensus       164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~------~~~l~~l~~~~  234 (606)
T 3t6q_A          164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLK------NSTIQSLWLGT  234 (606)
T ss_dssp             CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTT------TCEEEEEECCC
T ss_pred             cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhcc------ccchhheechh
Confidence            99988899999999999  8999999999965555556789999999987   4555666655      44333333222


Q ss_pred             cccc----C-CC-ccCCC--CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCc
Q 047152          354 ITGS----M-PN-LGEFS--SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS  425 (776)
Q Consensus       354 l~~~----~-~~-l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  425 (776)
                      +.+.    + +. +..+.  +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|+
T Consensus       235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCC
T ss_pred             hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCC
Confidence            2211    0 11 22222  6778888888887777777777888888888888776 4555 46777788888888887


Q ss_pred             cceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccC--CcccccccCCCCeE
Q 047152          426 LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKV--PDLSLRFDISGPGI  503 (776)
Q Consensus       426 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~--p~~~~~~~~~l~~l  503 (776)
                      +++..+..+..+++|++|++++|.+.+.+|..          .+..+++|++|++++|.+++..  |.            
T Consensus       313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~------------  370 (606)
T 3t6q_A          313 FENLCQISASNFPSLTHLSIKGNTKRLELGTG----------CLENLENLRELDLSHDDIETSDCCNL------------  370 (606)
T ss_dssp             CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS----------TTTTCTTCCEEECCSSCCCEEEESTT------------
T ss_pred             cCcCchhhhhccCcCCEEECCCCCcccccchh----------hhhccCcCCEEECCCCccccccCcch------------
Confidence            77666666666666666666666655443321          1112334555555555554321  11            


Q ss_pred             eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChh-hhCCCCCcEEeccCCccccc
Q 047152          504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDC-WFQFDSLVILNLANNNFFGK  582 (776)
Q Consensus       504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~  582 (776)
                                ....+++|++|++++|++++..+..+..+++|++|++++|++++..+.. +..+++|++|++++|.+.+.
T Consensus       371 ----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  440 (606)
T 3t6q_A          371 ----------QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS  440 (606)
T ss_dssp             ----------TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred             ----------hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence                      0112567888888888888888888888888888888888888766544 77888888888888888887


Q ss_pred             CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccC---CchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152          583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG---VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK  659 (776)
Q Consensus       583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  659 (776)
                      .|..+..+++|                    ++|++++|++++.   .+..++.+++|++|++++|++++.+|..++.++
T Consensus       441 ~~~~~~~l~~L--------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  500 (606)
T 3t6q_A          441 SEQLFDGLPAL--------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK  500 (606)
T ss_dssp             CTTTTTTCTTC--------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CHHHHhCCCCC--------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence            78777777666                    7889999999873   346799999999999999999998899999999


Q ss_pred             CCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152          660 SLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       660 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      +|++|+|++|++++.+|..+.+++.| +|++++|++++..|.. ..+..+..+.+.|||+.|+|+
T Consensus       501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999 9999999999877754 456778889999999999886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-55  Score=506.58  Aligned_cols=510  Identities=18%  Similarity=0.237  Sum_probs=303.1

Q ss_pred             CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCCCCCCc---cceeeCCCCCcEEEEECCCCCCCCCCCceec
Q 047152           36 CIDEEREALLTFKASLVDES--------GILSSWRREDEKRDCCKW---TGVGCSKRTGHVNKLDLQPIGFDSFPLRGKI  104 (776)
Q Consensus        36 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~  104 (776)
                      ....|+.||.++++++.++.        ...++|+   .+.+||.|   .||+|+.. |||++|+|++     .++.|.+
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----~~l~g~l   97 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----FGASGRV   97 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----SCCEEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----cccCCcC
Confidence            44579999999999986442        1234798   47899999   99999754 8999999999     7899999


Q ss_pred             cccccCCCCCCEEeCCCCCCC------C-----CCCCccccCCCCCCEEecCCCCCCCCCCccCCC-CCCCCEEeccCCC
Q 047152          105 TPALLKLQHLTYLDLSRNNFS------G-----SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN-LSRLQFLDLSFNN  172 (776)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~  172 (776)
                      |++++++++|++|+|++|.+.      +     ..+|...  +.+|+ +++++|.+.+.+|..+.. +..+..+++....
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            999999999999999999762      1     0144433  45677 888888888888877662 2223333332221


Q ss_pred             CCCCCCchhhccCCCCcEEEcc--CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-----------------Cchhhh
Q 047152          173 LFSGENLDWLSHLSSLIYLYLD--LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-----------------IPSSLL  233 (776)
Q Consensus       173 ~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~  233 (776)
                      +..       .....++.+.+.  .|++++   +|..++++++|++|+|++|.+++.                 +|..++
T Consensus       175 ~~~-------~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          175 IKK-------SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             CCC-------CCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             ccc-------ccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence            110       001111111111  233333   334455555555555555555553                 455544


Q ss_pred             --cCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCc-ccc-CcchhhcCC------CCCCEEEccCCCCCC
Q 047152          234 --NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ-LQG-SIPEAFGRM------VSLRYLDLSSNELRG  303 (776)
Q Consensus       234 --~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~  303 (776)
                        ++   ++|++|++++|++.+.+|..++++++  |++|++++|+ +++ .+|..++.+      ++|++|++++|+++.
T Consensus       245 ~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~  319 (636)
T 4eco_A          245 WDNL---KDLTDVEVYNCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT  319 (636)
T ss_dssp             GGGC---TTCCEEEEECCTTCSSCCTTTTTCSS--CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred             hccc---CCCCEEEecCCcCCccChHHHhcCCC--CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence              55   55555555555555555555555555  5666666655 555 555555544      566666666666666


Q ss_pred             Cch--hhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCC-CCEEeccCcccccc
Q 047152          304 IPK--FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSS-LKQLNLENNLLNGT  380 (776)
Q Consensus       304 ip~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~-L~~L~Ls~n~l~~~  380 (776)
                      +|.  .++++++|++|++++|.++|.+| .+..++      +|++|++++|+++..+..+..+++ |++|++++|.++ .
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~------~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI------KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE------EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC------CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c
Confidence            665  56666666666666666665555 555555      666666666666633333666666 666666666666 5


Q ss_pred             chhcccCCC--CCcEEECCCccccccccHHhhh-------CCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152          381 IHKSIGQLF--KLEMLKLNGNSLGGVISEALFS-------NLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       381 ~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      +|..+..++  +|++|++++|.+++.+|. .+.       .+++|++|++++|+++.                       
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----------------------  447 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISK-----------------------  447 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCS-----------------------
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCc-----------------------
Confidence            555555443  666666666666665554 344       44555555555555441                       


Q ss_pred             CCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCcc
Q 047152          452 PRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKF  531 (776)
Q Consensus       452 ~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l  531 (776)
                                  +|..++..+++|++|++++|+++ .+|...+.                +                   
T Consensus       448 ------------lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~----------------~-------------------  479 (636)
T 4eco_A          448 ------------FPKELFSTGSPLSSINLMGNMLT-EIPKNSLK----------------D-------------------  479 (636)
T ss_dssp             ------------CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE----------------E-------------------
T ss_pred             ------------CCHHHHccCCCCCEEECCCCCCC-CcCHHHhc----------------c-------------------
Confidence                        11122222223334444444333 22220000                0                   


Q ss_pred             ccCCCccccCCCCccEEECcCCcccccCChhhh--CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccc
Q 047152          532 SGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF--QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKST  609 (776)
Q Consensus       532 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~  609 (776)
                         ....+..+++|++|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|                
T Consensus       480 ---~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L----------------  538 (636)
T 4eco_A          480 ---ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL----------------  538 (636)
T ss_dssp             ---TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC----------------
T ss_pred             ---ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC----------------
Confidence               0001122346777777777777 5666665  67777777777777765 66666666655                


Q ss_pred             cccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeee
Q 047152          610 LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMD  689 (776)
Q Consensus       610 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  689 (776)
                          ++|+|++|+                  ++++|++.+.+|..++.+++|++|+|++|++ +.+|..+.  ++|++|+
T Consensus       539 ----~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~  593 (636)
T 4eco_A          539 ----KGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD  593 (636)
T ss_dssp             ----CEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred             ----CEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence                344554443                  3456666767777777777777777777777 46666654  6777777


Q ss_pred             CCCCcceec
Q 047152          690 LSYNNLSGK  698 (776)
Q Consensus       690 ls~N~l~g~  698 (776)
                      +++|++.+.
T Consensus       594 Ls~N~l~~~  602 (636)
T 4eco_A          594 IKDNPNISI  602 (636)
T ss_dssp             CCSCTTCEE
T ss_pred             CcCCCCccc
Confidence            777777643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-53  Score=490.09  Aligned_cols=533  Identities=20%  Similarity=0.182  Sum_probs=423.6

Q ss_pred             EEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEE
Q 047152           87 KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL  166 (776)
Q Consensus        87 ~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  166 (776)
                      .++.++     .++. .+|..+.  +++++|+|++|.+++. .+..|.++++|++|++++|++++..|..|+++++|++|
T Consensus        15 ~~~c~~-----~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           15 TYQCMD-----QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             EEECTT-----SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceEccC-----CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            567777     4444 4555443  7899999999999975 66789999999999999999998888999999999999


Q ss_pred             eccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEE
Q 047152          167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVID  245 (776)
Q Consensus       167 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~  245 (776)
                      ++++|.+.. ..+..|+++++|++|++++|.+++.+.  ..++++++|++|++++|.+.+ .+|..++++   ++|++|+
T Consensus        86 ~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l---~~L~~L~  159 (606)
T 3vq2_A           86 ILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNL---TNLVHVD  159 (606)
T ss_dssp             ECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTC---TTCCEEE
T ss_pred             ECCCCcccc-cChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhc---CCCCEEE
Confidence            999999975 557789999999999999999988642  458999999999999999987 569999998   9999999


Q ss_pred             cCCCCCCCCchhhHhhcCCCC--cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccC
Q 047152          246 LTENNLTNSVYPWLFNVSSSL--VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSG  321 (776)
Q Consensus       246 Ls~n~l~~~~~~~l~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~  321 (776)
                      +++|++++..+..+..+.+..  ++.+++++|.+++..+..+... +|++|++++|.+++  +|..+.++++|+.+++..
T Consensus       160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            999999988888787776611  3489999999997766666555 89999999999985  788899999999988865


Q ss_pred             CcCCC------ccchHHhhccCCCcCCCccEEEc-ccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEE
Q 047152          322 KELKG------QLSEFIQDLSSGCTKNSLEWLHL-SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEML  394 (776)
Q Consensus       322 n~l~~------~~~~~~~~l~~~~~~~~L~~L~L-~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  394 (776)
                      +.+.+      ..+..+..+..    -.++.+++ ..|.+.+..|.+..+++|+.|++++|.+. .+| .+..+++|++|
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~----l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L  312 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCD----VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSL  312 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGG----SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEE
T ss_pred             cccccCCcccccChHHhhhhhh----ccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEE
Confidence            54432      22222333321    14777777 77788888888888999999999999987 455 78888899999


Q ss_pred             ECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCC--CchhhhccCCCCchhhhcc
Q 047152          395 KLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPR--FPKWLQTQNTVPNWFWDLT  472 (776)
Q Consensus       395 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~~~~~~~~p~~~~~~~  472 (776)
                      ++++|.+ +.+|.  + .+++|++|++++|+..+..  .+..+++|+++++++|++++.  +|..+.           .+
T Consensus       313 ~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-----------~~  375 (606)
T 3vq2_A          313 SIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL-----------GT  375 (606)
T ss_dssp             EEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH-----------CC
T ss_pred             EcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc-----------cC
Confidence            9999998 67774  4 8889999999998655443  455666777777777765432  122222           23


Q ss_pred             CcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECc
Q 047152          473 HQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLS  551 (776)
Q Consensus       473 ~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls  551 (776)
                      ++|++|++++|.+++ +|. .                     ...+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus       376 ~~L~~L~L~~n~l~~-~~~-~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSA-N---------------------FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECC-C---------------------CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             CcccEeECCCCcccc-chh-h---------------------ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            345555555555442 111 0                     0115678888888888887776 577778888888888


Q ss_pred             CCcccccCChhhhCCCCCcEEeccCCcccc-cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchh
Q 047152          552 NNLLSGKLPDCWFQFDSLVILNLANNNFFG-KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKE  630 (776)
Q Consensus       552 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  630 (776)
                      +|.+++..|..+.++++|++|++++|++++ .+|..++.+++|                    ++|++++|++++..|..
T Consensus       433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------TFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTT
T ss_pred             CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--------------------CEEECCCCcCCccChhh
Confidence            888888888888888888888888888887 367777776666                    78899999999988999


Q ss_pred             hhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCcceecCCCC
Q 047152          631 IMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       631 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~~  702 (776)
                      ++++++|++|+|++|++++.+|..++.+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.+|..
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            999999999999999999988999999999999999999998 6777788887 5999999999999988753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-53  Score=496.85  Aligned_cols=517  Identities=19%  Similarity=0.267  Sum_probs=299.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--CCc------------cceeeCCCCCcEEEEECCCCCC
Q 047152           32 NKTRCIDEEREALLTFKASLVDESGILSSWRRED--EKRDC--CKW------------TGVGCSKRTGHVNKLDLQPIGF   95 (776)
Q Consensus        32 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~   95 (776)
                      ..+.+..+|+.||++||+++.+|     +|+..+  ...+|  |.|            .||+|+. .+||++|+|++   
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---  332 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---  332 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred             cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence            34456778999999999999876     786421  01244  999            9999975 68999999999   


Q ss_pred             CCCCCceeccccccCCCCCCEEeC-CCCCCCCCCCCccccCC-CCCC-----EE---------ec-CCCCCC--------
Q 047152           96 DSFPLRGKITPALLKLQHLTYLDL-SRNNFSGSSIPEFLGSL-GKLS-----YL---------GL-SSAEFA--------  150 (776)
Q Consensus        96 ~~~~l~g~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~-----~L---------~L-s~n~l~--------  150 (776)
                        +++.|.+|++|+++++|++|+| ++|.++|. .|-..... ..+.     .+         +. ....+.        
T Consensus       333 --~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~  409 (876)
T 4ecn_A          333 --FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN  409 (876)
T ss_dssp             --TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             --CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence              7899999999999999999999 88877654 22111100 0000     00         00 000000        


Q ss_pred             ---CCCCccCCCCCCCCEEeccC--CCCCCCCCchhhccCCCCcEEEccCCCCCCc---------------chhhHhhc-
Q 047152          151 ---GPIPHQLGNLSRLQFLDLSF--NNLFSGENLDWLSHLSSLIYLYLDLNDLSNF---------------SNWVQLLS-  209 (776)
Q Consensus       151 ---~~~p~~l~~l~~L~~L~Ls~--n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---------------~~~~~~l~-  209 (776)
                         ...+........++.+.++.  |++.+  .|..++++++|++|+|++|.+++.               ..+|..++ 
T Consensus       410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f  487 (876)
T 4ecn_A          410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW  487 (876)
T ss_dssp             TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             hCccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence               00010111122233333322  44432  344566666666666666666551               02456666 


Q ss_pred             -CCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC-CCC-CchhhHhhcC-------CCCcCEEEccCCcccc
Q 047152          210 -KLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN-LTN-SVYPWLFNVS-------SSLVDRISLPSNQLQG  279 (776)
Q Consensus       210 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~-l~~-~~~~~l~~~~-------~~~L~~L~L~~n~l~~  279 (776)
                       ++++|++|+|++|.+.+.+|..++++   ++|++|++++|+ +++ .+|..++++.       +  |+.|++++|+++ 
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L---~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~--L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWTRLADDEDTGPK--IQIFYMGYNNLE-  561 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCGGGGGC---SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT--CCEEECCSSCCC-
T ss_pred             ccCCCCCEEECcCCCCCccChHHHhCC---CCCCEEECcCCCCcccccchHHHHhhhhcccccCC--ccEEEeeCCcCC-
Confidence             78888888888888888888888877   788888888887 777 7777777665       5  666666666666 


Q ss_pred             Ccch--hhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCC-ccEEEcccccccc
Q 047152          280 SIPE--AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS-LEWLHLSSNEITG  356 (776)
Q Consensus       280 ~~p~--~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~-L~~L~L~~n~l~~  356 (776)
                      .+|.  .++++++|++|++++|.++.+| .++.+++|++|++++|.++ .+|..+..++      + |++|++++|.++ 
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~------~~L~~L~Ls~N~L~-  632 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT------DQVEGLGFSHNKLK-  632 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC------TTCCEEECCSSCCC-
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhcc------ccCCEEECcCCCCC-
Confidence            5565  6666666666666666666666 5666666666666666666 4555555554      4 666666666655 


Q ss_pred             cCCC-ccCCC--CCCEEeccCccccccchhc---cc--CCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152          357 SMPN-LGEFS--SLKQLNLENNLLNGTIHKS---IG--QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       357 ~~~~-l~~l~--~L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      .+|. +...+  +|+.|++++|++++.+|..   +.  .+++|+.|++++|.++ .+|...+..+++|+.|++++|+++ 
T Consensus       633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence            2333 33332  2566666666655544321   11  2235555555555554 344433444555555555554443 


Q ss_pred             ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152          429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN  508 (776)
Q Consensus       429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n  508 (776)
                                                                                 .+|...+.             
T Consensus       711 -----------------------------------------------------------~ip~~~~~-------------  718 (876)
T 4ecn_A          711 -----------------------------------------------------------SIPENSLK-------------  718 (876)
T ss_dssp             -----------------------------------------------------------CCCTTSSS-------------
T ss_pred             -----------------------------------------------------------ccChHHhc-------------
Confidence                                                                       11110000             


Q ss_pred             cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh--CCCCCcEEeccCCcccccCCcc
Q 047152          509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF--QFDSLVILNLANNNFFGKIPNS  586 (776)
Q Consensus       509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~  586 (776)
                         +.                      ...+.++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..
T Consensus       719 ---~~----------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          719 ---PK----------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             ---CT----------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             ---cc----------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence               00                      001222446777777777777 5666665  77777777777777775 6666


Q ss_pred             ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeC
Q 047152          587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL  666 (776)
Q Consensus       587 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  666 (776)
                      +..+++|+.|+++++.              ++++|++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.|||
T Consensus       772 l~~L~~L~~L~Ls~N~--------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL  834 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQR--------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI  834 (876)
T ss_dssp             GGGCTTCCEEECCCCB--------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred             hhcCCCCCEEECCCCC--------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence            6666666444333322              3344555555565566666666666666665 35555543  35555555


Q ss_pred             cCceeeecCCccCcCCCCCCeeeCCCCcc
Q 047152          667 SRNQFFGGIPSSLSQLSGLSVMDLSYNNL  695 (776)
Q Consensus       667 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l  695 (776)
                      ++|++....+..+.....+..+.+.+|++
T Consensus       835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          835 ADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCCCCCccChHHccccccchheeecCCCc
Confidence            55555544444443333334444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-51  Score=492.43  Aligned_cols=528  Identities=21%  Similarity=0.204  Sum_probs=407.6

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152          116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL  195 (776)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  195 (776)
                      ..|.++++++  .+|.   -.++|++|||++|.+++..|..|+++++|++|+|++|.......+..|+++++|++|+|++
T Consensus         8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            5677778887  4676   4589999999999999888999999999999999999765434467899999999999999


Q ss_pred             CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchh--hhcCCCCCCccEEEcCCCCCCCCch-hhHhhcCCCCcCEEEc
Q 047152          196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSS--LLNLNSSNSLEVIDLTENNLTNSVY-PWLFNVSSSLVDRISL  272 (776)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~L~~L~L  272 (776)
                      |.+++.  .+..++++++|++|+|++|.+++..+..  +.++   ++|++|++++|.+.+..+ ..+.++++  |++|++
T Consensus        83 N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L---~~L~~L~Ls~N~l~~~~~~~~~~~L~~--L~~L~L  155 (844)
T 3j0a_A           83 SKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL---KALTRLDLSKNQIRSLYLHPSFGKLNS--LKSIDF  155 (844)
T ss_dssp             CCCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC---SSCCEEEEESCCCCCCCCCGGGGTCSS--CCEEEE
T ss_pred             CcCccc--CHhHccCCcccCEeeCcCCCCCcccccCcccccc---CCCCEEECCCCcccccccchhHhhCCC--CCEEEC
Confidence            999874  3678999999999999999999876654  7777   999999999999988655 57888998  999999


Q ss_pred             cCCccccCcchhhcCC--CCCCEEEccCCCCCC-CchhhcccCC------CcEEeccCCcCCCccchHHhhccCCCcCCC
Q 047152          273 PSNQLQGSIPEAFGRM--VSLRYLDLSSNELRG-IPKFLGNMCG------LKILYLSGKELKGQLSEFIQDLSSGCTKNS  343 (776)
Q Consensus       273 ~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~-ip~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~  343 (776)
                      ++|.+++..+..+..+  ++|+.|+++.|.+.+ .|..+..+.+      |++|++++|.+++..+..+....   ....
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---~~~~  232 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---SKSQ  232 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---CSCC
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---Cccc
Confidence            9999999888888877  899999999999988 6666666555      89999999998887777666542   1126


Q ss_pred             ccEEEccccccc---------ccCCC-ccC--CCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhh
Q 047152          344 LEWLHLSSNEIT---------GSMPN-LGE--FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFS  411 (776)
Q Consensus       344 L~~L~L~~n~l~---------~~~~~-l~~--l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  411 (776)
                      ++.+.++.+...         +..+. +..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. .|.
T Consensus       233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~  311 (844)
T 3j0a_A          233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFY  311 (844)
T ss_dssp             BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTT
T ss_pred             ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-Hhc
Confidence            778887744322         11111 222  25677777777777776677777777777777777777665554 567


Q ss_pred             CCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCc
Q 047152          412 NLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD  491 (776)
Q Consensus       412 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~  491 (776)
                      .+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+           ..+++|++|++++|.       
T Consensus       312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----------~~l~~L~~L~Ls~N~-------  373 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-----------KFLEKLQTLDLRDNA-------  373 (844)
T ss_dssp             TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-----------CSCCCCCEEEEETCC-------
T ss_pred             CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-----------cCCCCCCEEECCCCC-------
Confidence            77777777777777776666666666666666666666543322222           122345555555554       


Q ss_pred             ccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCc
Q 047152          492 LSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLV  570 (776)
Q Consensus       492 ~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  570 (776)
                                        +++. +. +++|+.|++++|+++.. |..   ..+++.|++++|++++... ..+.++++|+
T Consensus       374 ------------------l~~i-~~-~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~  429 (844)
T 3j0a_A          374 ------------------LTTI-HF-IPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ  429 (844)
T ss_dssp             ------------------SCCC-SS-CCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred             ------------------CCcc-cC-CCCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCccc
Confidence                              4432 11 57899999999999854 322   4678999999999986432 3456899999


Q ss_pred             EEeccCCcccccCCc-cccccCCCcEEecCCCcccccccccccccEEEccCCCCc-----cCCchhhhccccCCEEECcC
Q 047152          571 ILNLANNNFFGKIPN-SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG-----GGVPKEIMDLVGLVALNLSR  644 (776)
Q Consensus       571 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~  644 (776)
                      +|++++|++++..+. .+..+                    ++|+.|++++|.++     +..+..|.++++|++|+|++
T Consensus       430 ~L~Ls~N~l~~~~~~~~~~~~--------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          430 ILILNQNRFSSCSGDQTPSEN--------------------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             EEEEESCCCCCCCSSSSSCSC--------------------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred             eeeCCCCcccccccccccccC--------------------CccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence            999999999865443 23333                    44578899999987     45567789999999999999


Q ss_pred             CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCC
Q 047152          645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL  724 (776)
Q Consensus       645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l  724 (776)
                      |++++.+|..+..+++|++|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +..+..+.+.|||+.|+|++
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999998899999999999999999999987777776  89999999999999998853  66888899999999999986


Q ss_pred             C
Q 047152          725 R  725 (776)
Q Consensus       725 ~  725 (776)
                      .
T Consensus       566 ~  566 (844)
T 3j0a_A          566 S  566 (844)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-51  Score=474.13  Aligned_cols=516  Identities=17%  Similarity=0.142  Sum_probs=425.4

Q ss_pred             CCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 047152           82 TGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS  161 (776)
Q Consensus        82 ~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  161 (776)
                      ..+++.|++++     +.+.+..+.+|.++++|++|++++|.+++. .|..|+++++|++|+|++|++++..|..|++++
T Consensus        31 ~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           31 PSSTKNIDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             CTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             CCCcCEEECCC-----CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            35799999999     688888888999999999999999999975 688899999999999999999988899999999


Q ss_pred             CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCC-
Q 047152          162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNS-  240 (776)
Q Consensus       162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~-  240 (776)
                      +|++|++++|.+.. ..+..++++++|++|++++|.+.+.. +|..++++++|++|++++|++++..+..++.+..++. 
T Consensus       105 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          105 SLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             TCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             cCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            99999999999975 44466999999999999999998642 5688999999999999999999988887777633233 


Q ss_pred             ccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccc-cCcchhhcCCCCCCEEEccCCCCCC------Cc-hhhcccC
Q 047152          241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ-GSIPEAFGRMVSLRYLDLSSNELRG------IP-KFLGNMC  312 (776)
Q Consensus       241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~------ip-~~l~~l~  312 (776)
                      +++|++++|.+++..+..+. ..+  |+.|++++|.+. +.+|..++++++|+.+++..+.+..      ++ ..+..+.
T Consensus       183 l~~L~l~~n~l~~~~~~~~~-~~~--L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~  259 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQAFQ-GIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC  259 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTT-TCE--EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred             cceeeccCCCcceeCccccc-Cce--eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence            56999999999865544443 346  999999999987 4677889999999999987655443      11 1222222


Q ss_pred             --CCcEEec-cCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC
Q 047152          313 --GLKILYL-SGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF  389 (776)
Q Consensus       313 --~L~~L~L-s~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  389 (776)
                        .++.+++ ..+.+.+.+|. +..++      +|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+| .+ .++
T Consensus       260 ~l~l~~l~l~~~~~~~~~~~~-~~~l~------~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~  328 (606)
T 3vq2_A          260 DVTIDEFRLTYTNDFSDDIVK-FHCLA------NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLP  328 (606)
T ss_dssp             GSEEEEEEECCCTTCCGGGGS-CGGGT------TCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred             hccHhheeccccccccccccc-cccCC------CCCEEEecCccchh-hhhccccccCCEEEcccccC-cccc-cC-CCC
Confidence              4666777 67778887776 77777      89999999999874 45788889999999999999 5777 44 889


Q ss_pred             CCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceec--CCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCch
Q 047152          390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEF--SHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW  467 (776)
Q Consensus       390 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~  467 (776)
                      +|++|++++|...+.+   .+..+++|++|++++|++++..  +..+..+++|++|++++|.+.+ +|..+.        
T Consensus       329 ~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~--------  396 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM--------  396 (606)
T ss_dssp             SCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT--------
T ss_pred             ccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc--------
Confidence            9999999999665554   3668899999999999988763  6677788899999999998653 332222        


Q ss_pred             hhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccE
Q 047152          468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIY  547 (776)
Q Consensus       468 ~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  547 (776)
                         .+++|+.|++++|++.+..|...+                     ..+++|++|++++|++++..|..+..+++|++
T Consensus       397 ---~l~~L~~L~l~~n~l~~~~~~~~~---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          397 ---GLEELQHLDFQHSTLKRVTEFSAF---------------------LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             ---TCTTCCEEECTTSEEESTTTTTTT---------------------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             ---CCCCCCeeECCCCccCCccChhhh---------------------hccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence               245688888888877765542111                     12578999999999999999999999999999


Q ss_pred             EECcCCcccc-cCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccC
Q 047152          548 LDLSNNLLSG-KLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG  626 (776)
Q Consensus       548 L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  626 (776)
                      |++++|++++ .+|..+..+++|++|++++|++++..|..+..+++|                    ++|++++|++++.
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL--------------------QLLNMSHNNLLFL  512 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------CEEECCSSCCSCE
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC--------------------CEEECCCCcCCCc
Confidence            9999999998 478899999999999999999999999888888777                    7899999999999


Q ss_pred             CchhhhccccCCEEECcCCcccCcCcccccCcC-CCCeeeCcCceeeecCC
Q 047152          627 VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK-SLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       627 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p  676 (776)
                      +|..++++++|++|+|++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus       513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999999999999999 6888899997 69999999999986554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-49  Score=454.07  Aligned_cols=494  Identities=21%  Similarity=0.189  Sum_probs=378.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL  191 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  191 (776)
                      +++++|++++|.+++. .+..|.++++|++|++++|++++..|..|+++++|++|++++|++.. ..+..|+++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence            4688899999988864 56678888999999999998887777788889999999999988764 445678888999999


Q ss_pred             EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc---
Q 047152          192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV---  267 (776)
Q Consensus       192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L---  267 (776)
                      ++++|.++..+.  ..++++++|++|++++|.+.+ .+|..++++   ++|++|++++|++++..+..+..+++  +   
T Consensus       106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~~  178 (570)
T 2z63_A          106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLL  178 (570)
T ss_dssp             ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECTTSCCCEECGGGGHHHHT--CTTC
T ss_pred             cccccccccCCC--ccccccccccEEecCCCccceecChhhhccc---CCCCEEeCcCCccceecHHHccchhc--cchh
Confidence            999998887643  247888999999999998887 468888888   88999999999988877777877777  6   


Q ss_pred             -CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccCCcCC------CccchHHhhccCC
Q 047152          268 -DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELK------GQLSEFIQDLSSG  338 (776)
Q Consensus       268 -~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~~  338 (776)
                       +.+++++|.+++..|..+... +|++|++++|....  +|..+..+++++...+....+.      ......+..+.. 
T Consensus       179 ~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~-  256 (570)
T 2z63_A          179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN-  256 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG-
T ss_pred             hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc-
Confidence             789999999988877777766 79999999886554  6777888888877766533222      111222222221 


Q ss_pred             CcCCCccEEEcccc-cccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152          339 CTKNSLEWLHLSSN-EITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL  416 (776)
Q Consensus       339 ~~~~~L~~L~L~~n-~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L  416 (776)
                         -.++.++++++ .+.+..+. +..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.   ..+++|
T Consensus       257 ---l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L  327 (570)
T 2z63_A          257 ---LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSL  327 (570)
T ss_dssp             ---SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSC
T ss_pred             ---cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---cccccc
Confidence               03566777766 55555555 677777888888777777 466666666 7777777777775 4443   356677


Q ss_pred             cEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccC--Ccccc
Q 047152          417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKV--PDLSL  494 (776)
Q Consensus       417 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~--p~~~~  494 (776)
                      ++|++++|.+.+..+.  ..                                   +++|++|++++|.+++..  |. .+
T Consensus       328 ~~L~l~~n~~~~~~~~--~~-----------------------------------~~~L~~L~l~~n~l~~~~~~~~-~~  369 (570)
T 2z63_A          328 KRLTFTSNKGGNAFSE--VD-----------------------------------LPSLEFLDLSRNGLSFKGCCSQ-SD  369 (570)
T ss_dssp             CEEEEESCBSCCBCCC--CB-----------------------------------CTTCCEEECCSSCCBEEEEEEH-HH
T ss_pred             CEEeCcCCcccccccc--cc-----------------------------------CCCCCEEeCcCCccCccccccc-cc
Confidence            7777777766543322  22                                   234555555555554321  11 00


Q ss_pred             cccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEe
Q 047152          495 RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILN  573 (776)
Q Consensus       495 ~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~  573 (776)
                                           ..+++|++|++++|++++..+. +..+++|++|++++|.+++..| ..+.++++|++|+
T Consensus       370 ---------------------~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          370 ---------------------FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             ---------------------HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             ---------------------cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence                                 0145778888888888776555 7778899999999999987666 5688899999999


Q ss_pred             ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc-cCCchhhhccccCCEEECcCCcccCcCc
Q 047152          574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG-GGVPKEIMDLVGLVALNLSRNNLTGQIT  652 (776)
Q Consensus       574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  652 (776)
                      +++|.+.+..|..+..+++|                    ++|++++|+++ +.+|..++.+++|++|++++|++++..|
T Consensus       428 l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSL--------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  487 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTC--------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             CcCCcccccchhhhhcCCcC--------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence            99999988888888777777                    77899999997 5789999999999999999999998889


Q ss_pred             ccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcc
Q 047152          653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQL  705 (776)
Q Consensus       653 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  705 (776)
                      ..++.+++|++|++++|++++..|..+.++++|++|++++|+++|.+|....+
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            99999999999999999999988889999999999999999999999975433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-48  Score=442.95  Aligned_cols=495  Identities=21%  Similarity=0.219  Sum_probs=357.3

Q ss_pred             CCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCC
Q 047152           70 CCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEF  149 (776)
Q Consensus        70 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l  149 (776)
                      .|.|.|+ |+..          +     ++++ .+|..+.  ++|++|++++|.+++. .|..+.++++|++|++++|++
T Consensus         3 ~C~~~~~-c~~~----------~-----~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i   62 (549)
T 2z81_A            3 SCDASGV-CDGR----------S-----RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRI   62 (549)
T ss_dssp             EECTTSE-EECT----------T-----SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCC
T ss_pred             cCCCCce-EECC----------C-----Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCc
Confidence            4899998 8532          2     2333 3455443  7899999999999875 678899999999999999999


Q ss_pred             CCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc
Q 047152          150 AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP  229 (776)
Q Consensus       150 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  229 (776)
                      ++..|..|+++++|++|++++|++.+ ..+..++++++|++|++++|.+++.+ .+..++++++|++|++++|.+.+.+|
T Consensus        63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccC
Confidence            98888899999999999999999975 45556999999999999999998642 34578899999999999998555444


Q ss_pred             -hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc---
Q 047152          230 -SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP---  305 (776)
Q Consensus       230 -~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip---  305 (776)
                       ..+.++   ++|++|++++|++++..|..+..+++  |++|+++.|.+.......+..+++|++|++++|++++++   
T Consensus       141 ~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  215 (549)
T 2z81_A          141 RIDFAGL---TSLNELEIKALSLRNYQSQSLKSIRD--IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP  215 (549)
T ss_dssp             TTTTTTC---CEEEEEEEEETTCCEECTTTTTTCSE--EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred             Hhhhhcc---cccCeeeccCCcccccChhhhhcccc--CceEecccCcccccchhhHhhcccccEEEccCCccccccccc
Confidence             577777   89999999999999888888888888  999999998876433333467899999999999988842   


Q ss_pred             h-hhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC-------CccCCCCCCEEeccCccc
Q 047152          306 K-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-------NLGEFSSLKQLNLENNLL  377 (776)
Q Consensus       306 ~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~-------~l~~l~~L~~L~Ls~n~l  377 (776)
                      . ....+++|++|++++|.+++..+..+.....  ...+|+.+++++|.+.+...       .+..+++|+.|++.++.+
T Consensus       216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  293 (549)
T 2z81_A          216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI  293 (549)
T ss_dssp             CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred             cchhhhhhcccceeccccccchhHHHHHHHHhh--hhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence            2 2345778899999998888766555433211  12278888888888765321       134566666777666655


Q ss_pred             cccc-----hhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCC
Q 047152          378 NGTI-----HKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGP  452 (776)
Q Consensus       378 ~~~~-----~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  452 (776)
                      ....     +..+...++|+.|++++|.+. .+|...+..+++|++|++++|++++                        
T Consensus       294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~------------------------  348 (549)
T 2z81_A          294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE------------------------  348 (549)
T ss_dssp             SCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH------------------------
T ss_pred             chhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc------------------------
Confidence            4321     111122344555555555553 3444333445555555555554443                        


Q ss_pred             CCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccc
Q 047152          453 RFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS  532 (776)
Q Consensus       453 ~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~  532 (776)
                                                         .+|.. ..                  ....+++|++|++++|+++
T Consensus       349 -----------------------------------~~~~~-~~------------------~~~~l~~L~~L~Ls~N~l~  374 (549)
T 2z81_A          349 -----------------------------------EYLKN-SA------------------CKGAWPSLQTLVLSQNHLR  374 (549)
T ss_dssp             -----------------------------------HHHHH-HT------------------CTTSSTTCCEEECTTSCCC
T ss_pred             -----------------------------------ccccc-hh------------------hhhccccCcEEEccCCccc
Confidence                                               22210 00                  0001345566666666665


Q ss_pred             cCCC--ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccccccc
Q 047152          533 GSIS--FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTL  610 (776)
Q Consensus       533 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l  610 (776)
                      +..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+                      .
T Consensus       375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------~  430 (549)
T 2z81_A          375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------P  430 (549)
T ss_dssp             CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------C
T ss_pred             ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------c
Confidence            4432  34566778888888888887 577777778888888888888763 33322                      1


Q ss_pred             ccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeC
Q 047152          611 GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDL  690 (776)
Q Consensus       611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  690 (776)
                      ++|++||+++|++++.+    +.+++|++|+|++|+++ .+|. .+.+++|++|+|++|++++.+|..+..+++|++|++
T Consensus       431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence            24588999999999753    57899999999999999 6776 578999999999999999999999999999999999


Q ss_pred             CCCcceecCCCC
Q 047152          691 SYNNLSGKIPLG  702 (776)
Q Consensus       691 s~N~l~g~iP~~  702 (776)
                      ++|+++|.+|..
T Consensus       505 ~~N~~~~~~~~~  516 (549)
T 2z81_A          505 HTNPWDCSCPRI  516 (549)
T ss_dssp             CSSCBCCCHHHH
T ss_pred             cCCCccCCCccH
Confidence            999999998853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=431.02  Aligned_cols=515  Identities=22%  Similarity=0.236  Sum_probs=378.4

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL  193 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L  193 (776)
                      .++.+.++..++  .+|..+.  +++++|++++|++++..+..|.++++|++|++++|++.. ..+..|+++++|++|++
T Consensus         9 ~~~~~c~~~~l~--~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCS--SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCcc--ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeC
Confidence            345667776776  4776554  689999999999998888899999999999999999875 45567899999999999


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC-CchhhHhhcCCCCcCEEEc
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN-SVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~L~~L~L  272 (776)
                      ++|.++..+  +..++++++|++|++++|.+++..+..++++   ++|++|++++|.+.+ .+|..+.++++  |++|++
T Consensus        84 ~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l---~~L~~L~L~~n~l~~~~lp~~~~~l~~--L~~L~l  156 (570)
T 2z63_A           84 TGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDL  156 (570)
T ss_dssp             TTCCCCEEC--TTTTTTCTTCCEEECTTSCCCCSTTCSCTTC---TTCCEEECCSSCCCCCCCCGGGGGCTT--CCEEEC
T ss_pred             cCCcCCccC--HhhhcCccccccccccccccccCCCcccccc---ccccEEecCCCccceecChhhhcccCC--CCEEeC
Confidence            999998753  4678999999999999999988776667777   899999999999987 57888998988  999999


Q ss_pred             cCCccccCcchhhcCCCCC----CEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCC-ccchHHhhccCCCcCCCccE
Q 047152          273 PSNQLQGSIPEAFGRMVSL----RYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKG-QLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~L~~  346 (776)
                      ++|++++..+..++.+++|    ++|++++|.+++++ ..+.. .+|++|++++|.... ..+..+..+.      .++.
T Consensus       157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~------~l~~  229 (570)
T 2z63_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA------GLEV  229 (570)
T ss_dssp             TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT------TCEE
T ss_pred             cCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc------ccce
Confidence            9999988888888888888    88999999998854 44444 478999998885443 3455566665      6666


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc-cccccccHHhhhCCCCCcEEECCCCc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN-SLGGVISEALFSNLSRLAALDLADNS  425 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~  425 (776)
                      ..+....+...       ..++.  +....+.     .+..+ .++.++++++ .+.+.++. .+..+++|++|++++|.
T Consensus       230 ~~l~~~~~~~~-------~~l~~--~~~~~~~-----~l~~l-~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  293 (570)
T 2z63_A          230 HRLVLGEFRNE-------GNLEK--FDKSALE-----GLCNL-TIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVT  293 (570)
T ss_dssp             EEEEEEECCCC-------SSCEE--CCTTTTG-----GGGGS-EEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCE
T ss_pred             eeeccccccCc-------hhhhh--cchhhhc-----ccccc-chhhhhhhcchhhhhhchh-hhcCcCcccEEEecCcc
Confidence            66554333211       11110  0111111     11111 2344445444 44444443 45555556666665555


Q ss_pred             cceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEec
Q 047152          426 LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDI  505 (776)
Q Consensus       426 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l  505 (776)
                      ++ .++..+... +|+++++++|.+. .+|.+             .+++|+.|++++|.+.+.++.              
T Consensus       294 l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~-------------~l~~L~~L~l~~n~~~~~~~~--------------  343 (570)
T 2z63_A          294 IE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL-------------KLKSLKRLTFTSNKGGNAFSE--------------  343 (570)
T ss_dssp             EC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC-------------BCSSCCEEEEESCBSCCBCCC--------------
T ss_pred             ch-hhhhhhccC-CccEEeeccCccc-ccCcc-------------cccccCEEeCcCCcccccccc--------------
Confidence            54 233333333 5555555555443 22210             123455555555554433221              


Q ss_pred             cCCcccccCCCCCCCCcEEEccCCccccCC--CccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccC
Q 047152          506 SSNHFEGPIPPLPSNATSLNLSKNKFSGSI--SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI  583 (776)
Q Consensus       506 ~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  583 (776)
                                ..+++|++|++++|++++..  +..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..
T Consensus       344 ----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          344 ----------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             ----------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             ----------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence                      12567888888888887654  55677788888888888888855444 888888888888888887665


Q ss_pred             C-ccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCccc-CcCcccccCcCCC
Q 047152          584 P-NSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT-GQITPKIGQLKSL  661 (776)
Q Consensus       584 p-~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L  661 (776)
                      | ..+..+++|                    ++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..++.+++|
T Consensus       413 ~~~~~~~l~~L--------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          413 EFSVFLSLRNL--------------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             TSCTTTTCTTC--------------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             chhhhhcCCCC--------------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            5 345555555                    78999999999999999999999999999999998 6799999999999


Q ss_pred             CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCCC
Q 047152          662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLPL  724 (776)
Q Consensus       662 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~l  724 (776)
                      ++|++++|++++..|..+.++++|++|++++|++++..|.. ..+..+..+.+.+||+.|+++.
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999999999999999999999999877653 5677888899999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-47  Score=430.67  Aligned_cols=454  Identities=19%  Similarity=0.207  Sum_probs=275.2

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152          116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL  195 (776)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  195 (776)
                      +||+++|.++  .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|++.+ ..+..|+++++|++|++++
T Consensus         4 ~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            4 LVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             EEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCS
T ss_pred             eEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCC
Confidence            4455555554  2444333  455555555555554444445555555555555555432 2233445555555555555


Q ss_pred             CCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                      |+++.++   ..  .+++|++|++++|.+++ ..|..++++   ++|++|++++|.+++   ..+..+++..++.|++++
T Consensus        79 N~l~~lp---~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l---~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           79 NKLVKIS---CH--PTVNLKHLDLSFNAFDALPICKEFGNM---SQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             SCCCEEE---CC--CCCCCSEEECCSSCCSSCCCCGGGGGC---TTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             CceeecC---cc--ccCCccEEeccCCccccccchhhhccC---CcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            5554432   11  45555555555555554 345555555   555566665555554   223334440125666666


Q ss_pred             Ccc--ccCcchhhcCCC-CCCEEEccCCCCCC-Cc-hhhcccCCCcEEeccCCc-------CCCccchHHhhccCCCcCC
Q 047152          275 NQL--QGSIPEAFGRMV-SLRYLDLSSNELRG-IP-KFLGNMCGLKILYLSGKE-------LKGQLSEFIQDLSSGCTKN  342 (776)
Q Consensus       275 n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~~~~~~  342 (776)
                      |.+  .+..|..+..+. +...+++++|.+.+ ++ ..+..+++|+.+++++|.       +.+.++ .+..++      
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~------  220 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP------  220 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT------
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc------
Confidence            655  555555555444 23344555555554 22 334555556666666554       333333 333343      


Q ss_pred             CccEEEcccccccccCCC----ccCCCCCCEEeccCccccccchhcc-----cCCCCCcEEECCCccccccccHHhhhCC
Q 047152          343 SLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNLLNGTIHKSI-----GQLFKLEMLKLNGNSLGGVISEALFSNL  413 (776)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~~l  413 (776)
                      +|+.|++++|.+++..+.    ....++|++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+|...+..+
T Consensus       221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~  298 (520)
T 2z7x_B          221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI  298 (520)
T ss_dssp             TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred             chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence            555555555554432111    1112355556666655555555555     5555555555555555  3332122221


Q ss_pred             ---CCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152          414 ---SRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP  490 (776)
Q Consensus       414 ---~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p  490 (776)
                         .+|+.|++++|.+.                                                           +.  
T Consensus       299 ~~~~~L~~L~l~~n~l~-----------------------------------------------------------~~--  317 (520)
T 2z7x_B          299 FSNMNIKNFTVSGTRMV-----------------------------------------------------------HM--  317 (520)
T ss_dssp             HHTCCCSEEEEESSCCC-----------------------------------------------------------CC--
T ss_pred             cccCceeEEEcCCCccc-----------------------------------------------------------cc--
Confidence               23444444333322                                                           10  


Q ss_pred             cccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccc--cCChhhhCCCC
Q 047152          491 DLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG--KLPDCWFQFDS  568 (776)
Q Consensus       491 ~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~  568 (776)
                                            ..+..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++
T Consensus       318 ----------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          318 ----------------------LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             ----------------------CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ----------------------cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence                                  001225677888888888888777778889999999999999987  56788999999


Q ss_pred             CcEEeccCCcccccCCcc-ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcc
Q 047152          569 LVILNLANNNFFGKIPNS-MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL  647 (776)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  647 (776)
                      |++|++++|++++.+|.. +..+++|                    ++|++++|++++.+|..+.  ++|++|++++|++
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L--------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSL--------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI  433 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTC--------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCcccccchhccCccC--------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence            999999999999756653 5555555                    7899999999988887765  7999999999999


Q ss_pred             cCcCcccccCcCCCCeeeCcCceeeecCCcc-CcCCCCCCeeeCCCCcceecCCC
Q 047152          648 TGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-LSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       648 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      + .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|+++|.++.
T Consensus       434 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          434 K-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             c-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9 79998999999999999999999 56655 99999999999999999998774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.6e-46  Score=426.07  Aligned_cols=487  Identities=23%  Similarity=0.241  Sum_probs=336.3

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL  193 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L  193 (776)
                      ..+.|.+++.++  .+|..+.  ++|++|++++|++++..|..|+++++|++|++++|++.. ..+..|+++++|++|++
T Consensus         7 ~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            7 SGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             TSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEEC
Confidence            344688888888  4777664  789999999999998888889999999999999998874 44456777888888888


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L  272 (776)
                      ++|.+++.+  +..++++++|++|++++|.+++. .|..++++   ++|++|++++|++.+.+|                
T Consensus        82 s~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~----------------  140 (549)
T 2z81_A           82 SDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIR----------------  140 (549)
T ss_dssp             TTSCCCSCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC---TTCCEEEEEESSSCCEEC----------------
T ss_pred             CCCccCccC--HHHhccCCCCcEEECCCCcccccchhhhhhcc---CCccEEECCCCccccccC----------------
Confidence            888777742  34577777777777777777652 34455555   666666666665333333                


Q ss_pred             cCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                               +..++++++|++|++++|.+++ +|..++.+++|++|++++|.+.......+..++      +|++|++++
T Consensus       141 ---------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~  205 (549)
T 2z81_A          141 ---------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRD  205 (549)
T ss_dssp             ---------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEES
T ss_pred             ---------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc------cccEEEccC
Confidence                     1234455555555555555555 445555555555555555554433222233344      566666666


Q ss_pred             ccccccC----CCccCCCCCCEEeccCccccccchh----cccCCCCCcEEECCCcccccccc-----HHhhhCCCCCcE
Q 047152          352 NEITGSM----PNLGEFSSLKQLNLENNLLNGTIHK----SIGQLFKLEMLKLNGNSLGGVIS-----EALFSNLSRLAA  418 (776)
Q Consensus       352 n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~-----~~~~~~l~~L~~  418 (776)
                      |++++..    +....+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+...     ...+..+++|+.
T Consensus       206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~  285 (549)
T 2z81_A          206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET  285 (549)
T ss_dssp             CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred             CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence            6666532    1234566777777777777664433    33556777888888877655311     012456778888


Q ss_pred             EECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccC
Q 047152          419 LDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDI  498 (776)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~  498 (776)
                      +++.++.+.....  +                           ..++ .+.....+++.+++++|++. .+|...+.   
T Consensus       286 L~l~~~~i~~~~~--~---------------------------~~l~-~~~~~~~~L~~L~l~~n~l~-~ip~~~~~---  331 (549)
T 2z81_A          286 VTIRRLHIPQFYL--F---------------------------YDLS-TVYSLLEKVKRITVENSKVF-LVPCSFSQ---  331 (549)
T ss_dssp             EEEESCBCSCGGG--S---------------------------CCCC-HHHHHSTTCCEEEEESSCCC-CCCHHHHH---
T ss_pred             ccccccccchhhh--c---------------------------ccch-hhhhhcccceEEEeccCccc-cCCHHHHh---
Confidence            8888776542110  0                           0011 11222346777777777764 34431100   


Q ss_pred             CCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC---ccccCCCCccEEECcCCcccccCC--hhhhCCCCCcEEe
Q 047152          499 SGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS---FLCSLSNRLIYLDLSNNLLSGKLP--DCWFQFDSLVILN  573 (776)
Q Consensus       499 ~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~  573 (776)
                                        .+++|++|++++|++++.++   ..+..+++|++|++++|++++..+  ..+..+++|++|+
T Consensus       332 ------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          332 ------------------HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             ------------------HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             ------------------cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence                              14678888888888887654   346778999999999999986543  5688999999999


Q ss_pred             ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc
Q 047152          574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP  653 (776)
Q Consensus       574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  653 (776)
                      +++|+++ .+|..+..+++|                    ++|++++|+++ .+|..+.  ++|++|+|++|++++.+  
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L--------------------~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~--  447 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKM--------------------RFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS--  447 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTC--------------------CEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC--
T ss_pred             CCCCCCc-cCChhhcccccc--------------------cEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc--
Confidence            9999998 678777766666                    78899999998 4555442  68999999999999643  


Q ss_pred             cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152          654 KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       654 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  723 (776)
                        +.+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+..+.+++||+.|+|+
T Consensus       448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence              57899999999999998 6776 467899999999999999887753 567788889999999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.9e-45  Score=423.22  Aligned_cols=514  Identities=22%  Similarity=0.208  Sum_probs=351.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL  191 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  191 (776)
                      +.+++|||++|.|++. .|..|.++++|++|||++|++++..|.+|+++++|++|+|++|++.. ..+..|+++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEE
Confidence            4789999999999864 45688999999999999999987777789999999999999998864 445678899999999


Q ss_pred             EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCC--CcC
Q 047152          192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSS--LVD  268 (776)
Q Consensus       192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~L~  268 (776)
                      ++++|++++++  +..++++++|++|++++|.+++. .|..++.+   ++|++|++++|++++..+..+..+.+.  ...
T Consensus       130 ~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          130 VAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             ECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred             ECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCchhhccc---hhhhhhcccCccccccccccccchhhhhhhhh
Confidence            99999888854  24578889999999999988764 56777777   888999999998888777776665431  134


Q ss_pred             EEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccCCcC------CCccchHHhhccCCCc
Q 047152          269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKEL------KGQLSEFIQDLSSGCT  340 (776)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~~~~  340 (776)
                      .++++.|.+....+..+ ....++.+++.+|....  .+..+..+..++...+..+..      .......+....    
T Consensus       205 ~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~----  279 (635)
T 4g8a_A          205 SLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC----  279 (635)
T ss_dssp             EEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG----
T ss_pred             hhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc----
Confidence            67788888776544433 34456777777776554  344566666666665543222      222222333333    


Q ss_pred             CCCccEEEccccccc----ccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152          341 KNSLEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL  416 (776)
Q Consensus       341 ~~~L~~L~L~~n~l~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L  416 (776)
                        .+...++..+...    +....+....+++.+++.++.+.+..  .+.....|+.|++.+|.+.+..+    ..+..|
T Consensus       280 --~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L  351 (635)
T 4g8a_A          280 --NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT----LKLKSL  351 (635)
T ss_dssp             --GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC----CBCTTC
T ss_pred             --chhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc----ccchhh
Confidence              4444444433222    12222455566666666666655332  23445566666666666643322    234556


Q ss_pred             cEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccc
Q 047152          417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRF  496 (776)
Q Consensus       417 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~  496 (776)
                      +.+++..|.....  .....+++|+.+++++|.+...                                 +..+. ....
T Consensus       352 ~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~---------------------------------~~~~~-~~~~  395 (635)
T 4g8a_A          352 KRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK---------------------------------GCCSQ-SDFG  395 (635)
T ss_dssp             CEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE---------------------------------EECCH-HHHS
T ss_pred             hhcccccccCCCC--cccccccccccchhhccccccc---------------------------------ccccc-chhh
Confidence            6666666654432  1223344444454444443210                                 01111 1111


Q ss_pred             cCCCCeEeccCCcccccCCCC--CCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEe
Q 047152          497 DISGPGIDISSNHFEGPIPPL--PSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN  573 (776)
Q Consensus       497 ~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  573 (776)
                      ...++.+++..+...+..+..  +.+++.+++++++.....+ ..+..+++++.+++++|.+.+..+..+..+++|++|+
T Consensus       396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~  475 (635)
T 4g8a_A          396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  475 (635)
T ss_dssp             CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            112244444444443322221  5667777777776665544 3566677888888888888877777778888888888


Q ss_pred             ccCCcc-cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCc
Q 047152          574 LANNNF-FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT  652 (776)
Q Consensus       574 Ls~N~l-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  652 (776)
                      +++|++ .+..|..|..+++|                    ++|||++|++++.+|..|+++++|++|+|++|+|++..|
T Consensus       476 Ls~N~~~~~~~~~~~~~l~~L--------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          476 MAGNSFQENFLPDIFTELRNL--------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             CTTCEEGGGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             hhhcccccccCchhhhhcccc--------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence            888864 34466666666655                    789999999999999999999999999999999998888


Q ss_pred             ccccCcCCCCeeeCcCceeeecCCccCcCC-CCCCeeeCCCCcceecCCC
Q 047152          653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQL-SGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       653 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~  701 (776)
                      ..++.+++|++|||++|++++..|..+..+ ++|++|++++|+++|.+..
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            899999999999999999999999999998 6899999999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6e-45  Score=412.82  Aligned_cols=458  Identities=21%  Similarity=0.222  Sum_probs=319.4

Q ss_pred             CEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEc
Q 047152          140 SYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSL  219 (776)
Q Consensus       140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  219 (776)
                      ++||+++|+++ .+|..+.  ++|++|++++|.+.. ..+..+.++++|++|++++|++++.  .+..++++++|++|++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence            57888998888 6777665  788888888888764 3345666666777777766666653  2345566666666666


Q ss_pred             cCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcccc-CcchhhcCCCCCCEEEccC
Q 047152          220 YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG-SIPEAFGRMVSLRYLDLSS  298 (776)
Q Consensus       220 ~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~  298 (776)
                      ++|+++. +|..  .+   ++|++|++++                          |++++ .+|..|+++++|++|++++
T Consensus        77 s~N~l~~-lp~~--~l---~~L~~L~L~~--------------------------N~l~~~~~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B           77 SHNKLVK-ISCH--PT---VNLKHLDLSF--------------------------NAFDALPICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             CSSCCCE-EECC--CC---CCCSEEECCS--------------------------SCCSSCCCCGGGGGCTTCCEEEEEE
T ss_pred             CCCceee-cCcc--cc---CCccEEeccC--------------------------CccccccchhhhccCCcceEEEecC
Confidence            6665552 2322  22   4444444444                          44444 2455555666666666666


Q ss_pred             CCCCCCchhhcccCCC--cEEeccCCcC--CCccchHHhhccCCCcCCCccEEEcccccccccCCC--ccCCCCCCEEec
Q 047152          299 NELRGIPKFLGNMCGL--KILYLSGKEL--KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNL  372 (776)
Q Consensus       299 n~l~~ip~~l~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L  372 (776)
                      |.+++  ..+..+++|  ++|++++|.+  .+..|..+..+..     ....+++++|.+.+..+.  +..+++|+.|++
T Consensus       125 n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-----~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  197 (520)
T 2z7x_B          125 THLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-----ESLHIVFPTNKEFHFILDVSVKTVANLELSNI  197 (520)
T ss_dssp             SSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-----EEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred             cccch--hhccccccceeeEEEeeccccccccccccccccccc-----ceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence            66554  234455555  6666666666  5555555554431     234567777777766665  677888888888


Q ss_pred             cCcc-------ccccchhcccCCCCCcEEECCCccccccccHHhh--hCCCCCcEEECCCCccceecCCCC-----CCCC
Q 047152          373 ENNL-------LNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF--SNLSRLAALDLADNSLTLEFSHDW-----IPPF  438 (776)
Q Consensus       373 s~n~-------l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~  438 (776)
                      ++|.       +.+.+| .+..+++|+.|++++|.+++..+....  ...++|++|++++|++++.+|..+     ..+.
T Consensus       198 ~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~  276 (520)
T 2z7x_B          198 KCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK  276 (520)
T ss_dssp             EECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred             cccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence            8886       666665 678888888888888887654332211  124578888888888877666655     3333


Q ss_pred             CCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCC
Q 047152          439 QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP  518 (776)
Q Consensus       439 ~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~  518 (776)
                      .                                   |+.++++.|.+  .+|...+...            +      .-
T Consensus       277 ~-----------------------------------L~~l~l~~n~~--~~p~~~~~~~------------~------~~  301 (520)
T 2z7x_B          277 A-----------------------------------LSIHQVVSDVF--GFPQSYIYEI------------F------SN  301 (520)
T ss_dssp             E-----------------------------------EEEEEEEECCC--CSCTHHHHHH------------H------HT
T ss_pred             e-----------------------------------eEeccccccce--ecchhhhhcc------------c------cc
Confidence            3                                   44444444444  2221000000            0      01


Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccc--cCCccccccCCCcEE
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG--KIPNSMGFLHNIRSL  596 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L  596 (776)
                      .+++.|++++|.+.+...  ...+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..++.+++|   
T Consensus       302 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L---  376 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL---  376 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC---
T ss_pred             CceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC---
Confidence            357888888888765431  2568899999999999998899999999999999999999986  455666666666   


Q ss_pred             ecCCCcccccccccccccEEEccCCCCccCCchh-hhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC
Q 047152          597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKE-IMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI  675 (776)
Q Consensus       597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  675 (776)
                                       ++|++++|++++.+|.. +..+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+
T Consensus       377 -----------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~i  436 (520)
T 2z7x_B          377 -----------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SI  436 (520)
T ss_dssp             -----------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CC
T ss_pred             -----------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-cc
Confidence                             78999999999867764 88899999999999999988888775  89999999999999 88


Q ss_pred             CccCcCCCCCCeeeCCCCcceecCCCC--CcccccccccccCCCCCCCCCC
Q 047152          676 PSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYAGNPELCGLPL  724 (776)
Q Consensus       676 p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~l  724 (776)
                      |..+..+++|++|++++|+++ .+|..  ..+..+..+.+.+||+.|+|++
T Consensus       437 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             chhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            988889999999999999999 57754  4567788899999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.1e-46  Score=429.75  Aligned_cols=463  Identities=19%  Similarity=0.207  Sum_probs=289.2

Q ss_pred             CCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcc----------hhhHhhcCCCCCCEEEccCCCCCCCCch
Q 047152          161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFS----------NWVQLLSKLHSLTTLSLYSCDLPPIIPS  230 (776)
Q Consensus       161 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----------~~~~~l~~l~~L~~L~L~~n~l~~~~~~  230 (776)
                      .+++.|+|++|.+.+ ..++.++++++|++|+|++|.+...+          .++...  +..|+ ++++.+.+.+..|.
T Consensus        81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            467889999999875 56678899999999999988652110          112222  33344 55555555555554


Q ss_pred             hhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc--cCCccccCcchhhcCCCCCCEEEccCCCCCC-----
Q 047152          231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL--PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-----  303 (776)
Q Consensus       231 ~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----  303 (776)
                      .+..+  +..+..+++....+...      ....  ++.+.+  ..|++++ +|..++++++|++|+|++|.+++     
T Consensus       157 ~~~~~--~~~l~~~~l~~~~~~~~------~~~~--l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~  225 (636)
T 4eco_A          157 DFSDL--IKDCINSDPQQKSIKKS------SRIT--LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE  225 (636)
T ss_dssp             GSCHH--HHHHHHHCTTSCCCCCC------CCCC--CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred             hHHHH--HHHHhhcCccccccccc------cccc--hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc
Confidence            44321  01111111111111100      0000  122222  2456666 66666666666666666666666     


Q ss_pred             -------------Cchhhc--ccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc-ccc-cCCC-ccCC-
Q 047152          304 -------------IPKFLG--NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE-ITG-SMPN-LGEF-  364 (776)
Q Consensus       304 -------------ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~-l~~-~~~~-l~~l-  364 (776)
                                   +|..++  ++++|++|++++|.+.+.+|..+..++      +|++|++++|+ +++ .+|. ++.+ 
T Consensus       226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~Ls~n~~l~~~~lp~~~~~L~  299 (636)
T 4eco_A          226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP------EMQLINVACNRGISGEQLKDDWQALA  299 (636)
T ss_dssp             SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS------SCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred             cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC------CCCEEECcCCCCCccccchHHHHhhh
Confidence                         666655  666666666666666666665555555      56666666665 554 3443 3333 


Q ss_pred             -----CCCCEEeccCccccccchh--cccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCC
Q 047152          365 -----SSLKQLNLENNLLNGTIHK--SIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP  437 (776)
Q Consensus       365 -----~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  437 (776)
                           ++|++|++++|+++ .+|.  .++.+++|++|++++|+++|.+|  .+..+++|++|++++|+++ .+|..+..+
T Consensus       300 ~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  375 (636)
T 4eco_A          300 DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGF  375 (636)
T ss_dssp             HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred             ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence                 56666666666665 5555  55666666666666666655555  3555556666666666555 344444443


Q ss_pred             CC-CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCC
Q 047152          438 FQ-LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP  516 (776)
Q Consensus       438 ~~-L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~  516 (776)
                      ++ |++|++++|+                                   ++ .+|. .+...                   
T Consensus       376 ~~~L~~L~Ls~N~-----------------------------------l~-~lp~-~~~~~-------------------  399 (636)
T 4eco_A          376 TEQVENLSFAHNK-----------------------------------LK-YIPN-IFDAK-------------------  399 (636)
T ss_dssp             CTTCCEEECCSSC-----------------------------------CS-SCCS-CCCTT-------------------
T ss_pred             cccCcEEEccCCc-----------------------------------Cc-ccch-hhhhc-------------------
Confidence            33 4444444433                                   33 2222 11000                   


Q ss_pred             CCCCCcEEEccCCccccCCCcccc-------CCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccc
Q 047152          517 LPSNATSLNLSKNKFSGSISFLCS-------LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGF  589 (776)
Q Consensus       517 ~~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  589 (776)
                      .+.+|++|++++|++++.+|..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~  478 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK  478 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence            012455555555555555555444       5678899999999998433344556889999999999988 55554322


Q ss_pred             cCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhh--ccccCCEEECcCCcccCcCcccccCcCCCCeeeC-
Q 047152          590 LHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIM--DLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL-  666 (776)
Q Consensus       590 l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L-  666 (776)
                      ...            .....+++|++|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..++.+++|++|+| 
T Consensus       479 ~~~------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          479 DEN------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             ETT------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             ccc------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            110            00123346689999999999 7888887  99999999999999997 8999999999999999 


Q ss_pred             -----cCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCC
Q 047152          667 -----SRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG  721 (776)
Q Consensus       667 -----s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~  721 (776)
                           ++|++.+.+|..+.++++|++|++++|++ +.+|.. ....+..+.+++||..|-
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence                 56889999999999999999999999999 789976 347888999999998884

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.9e-45  Score=427.78  Aligned_cols=384  Identities=19%  Similarity=0.235  Sum_probs=248.0

Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCC------------------Cchhhc--ccCCCcEEeccCCcCCCccchHHhh
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRG------------------IPKFLG--NMCGLKILYLSGKELKGQLSEFIQD  334 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------------ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~  334 (776)
                      |++++ +|..++++++|++|+|++|.+++                  +|..++  ++++|++|++++|.+.+.+|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55555 56666666666666666666666                  565555  6666666666666666666655655


Q ss_pred             ccCCCcCCCccEEEccccc-ccc-cCCC-ccC-------CCCCCEEeccCccccccchh--cccCCCCCcEEECCCcccc
Q 047152          335 LSSGCTKNSLEWLHLSSNE-ITG-SMPN-LGE-------FSSLKQLNLENNLLNGTIHK--SIGQLFKLEMLKLNGNSLG  402 (776)
Q Consensus       335 l~~~~~~~~L~~L~L~~n~-l~~-~~~~-l~~-------l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~  402 (776)
                      ++      +|++|+|++|+ +++ .+|. ++.       +++|++|++++|.++ .+|.  .++.+++|+.|++++|+++
T Consensus       514 L~------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          514 LP------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             CS------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CC------CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            55      56666666665 554 3332 222       236666666666665 5555  5566666666666666655


Q ss_pred             ccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCC-CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcc
Q 047152          403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ-LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLS  481 (776)
Q Consensus       403 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~  481 (776)
                       .+|  .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|++. .+|.++....         .++|+.|+++
T Consensus       587 -~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---------~~~L~~L~Ls  652 (876)
T 4ecn_A          587 -HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---------VYVMGSVDFS  652 (876)
T ss_dssp             -BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---------SSCEEEEECC
T ss_pred             -cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc---------cCCCCEEECc
Confidence             444  3555566666666666655 45555555555 555555555554 3343222111         1235555555


Q ss_pred             cccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCCh
Q 047152          482 SNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPD  561 (776)
Q Consensus       482 ~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (776)
                      +|++.|.+|.......                 .....+|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|.
T Consensus       653 ~N~l~g~ip~l~~~l~-----------------~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          653 YNKIGSEGRNISCSMD-----------------DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             SSCTTTTSSSCSSCTT-----------------TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             CCcCCCccccchhhhc-----------------cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            5555544443110000                 001247888888888888655555667888999999999888 6666


Q ss_pred             hhhCC--------CCCcEEeccCCcccccCCcccc--ccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhh
Q 047152          562 CWFQF--------DSLVILNLANNNFFGKIPNSMG--FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI  631 (776)
Q Consensus       562 ~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  631 (776)
                      .+...        ++|+.|+|++|+++ .+|..+.  .+++|                    +.|+|++|++++ +|..+
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------------~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------------SNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------CEEECCSSCCSS-CCCGG
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------CEEEeCCCCCCc-cchhh
Confidence            54432        28889999999888 6777665  56655                    789999999997 89999


Q ss_pred             hccccCCEEECcC------CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCC-c
Q 047152          632 MDLVGLVALNLSR------NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT-Q  704 (776)
Q Consensus       632 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~  704 (776)
                      +.+++|+.|+|++      |++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-+... .
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence            9999999999976      888999999999999999999999999 78998876  699999999999976544221 1


Q ss_pred             ccccccccccCCCCC--CCCC
Q 047152          705 LQSFNELVYAGNPEL--CGLP  723 (776)
Q Consensus       705 ~~~~~~~~~~gN~~l--c~~~  723 (776)
                      ........+.+|+..  +||+
T Consensus       850 ~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          850 YIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHTTCCEEECCTTSEEESCG
T ss_pred             cccchheeecCCCccccCCCC
Confidence            112233445566544  4665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.5e-43  Score=407.96  Aligned_cols=516  Identities=20%  Similarity=0.159  Sum_probs=375.5

Q ss_pred             CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHh
Q 047152          128 SIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQL  207 (776)
Q Consensus       128 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  207 (776)
                      .+|..+.  +++++|||++|+|++..|.+|+++++|++|+|++|++.. ..+..|+++++|++|+|++|++++++  +..
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~  119 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLA--LGA  119 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEEC--GGG
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCC--HHH
Confidence            4676553  589999999999997777899999999999999999975 45567999999999999999999864  367


Q ss_pred             hcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC-CchhhHhhcCCCCcCEEEccCCccccCcchhhc
Q 047152          208 LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN-SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG  286 (776)
Q Consensus       208 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~  286 (776)
                      |+++++|++|++++|++++..+..|+++   ++|++|++++|.+.+ ..|..+..+++  |++|++++|++++..+..+.
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L---~~L~~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTC---TTCCEEECCSSCCCCCCCCGGGGGCTT--CCEEECCSSCCCEECGGGGH
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcC---cccCeeccccCccccCCCchhhccchh--hhhhcccCcccccccccccc
Confidence            8999999999999999999888888888   999999999999976 46788888888  99999999999988888776


Q ss_pred             CCCC----CCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc-cchHHhhccCCCcCCCccEEEccccccccc----
Q 047152          287 RMVS----LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ-LSEFIQDLSSGCTKNSLEWLHLSSNEITGS----  357 (776)
Q Consensus       287 ~l~~----L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~----  357 (776)
                      .+.+    ...++++.|.++.++........++.+++.+|..... .+..+..+.      .++...+..+.....    
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~------~l~~~~l~~~~~~~~~~l~  268 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA------GLEVHRLVLGEFRNEGNLE  268 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT------TCEEEEEEEECCTTSCCCS
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc------ccccccccccccccccccc
Confidence            5544    3478899999988776666666778888888876543 334455555      666666544332211    


Q ss_pred             --CC-CccCCCCCCEEeccCccccc---cchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecC
Q 047152          358 --MP-NLGEFSSLKQLNLENNLLNG---TIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFS  431 (776)
Q Consensus       358 --~~-~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  431 (776)
                        .. .+.....+...++..+....   ..+..+....+++.+++.++.+....   .+.....++.|++.+|.+.....
T Consensus       269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCC
T ss_pred             cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCc
Confidence              11 13444555555554443322   22333455566777777777664332   24555667777777766553222


Q ss_pred             CCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccc
Q 047152          432 HDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE  511 (776)
Q Consensus       432 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~  511 (776)
                      .   ...                                   .++.+++..|...+..+.   .....++.+++++|.+.
T Consensus       346 ~---~l~-----------------------------------~L~~l~l~~n~~~~~~~~---~~l~~L~~L~ls~n~l~  384 (635)
T 4g8a_A          346 L---KLK-----------------------------------SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLS  384 (635)
T ss_dssp             C---BCT-----------------------------------TCCEEEEESCCSCCBCCC---CBCTTCCEEECCSSCCB
T ss_pred             c---cch-----------------------------------hhhhcccccccCCCCccc---ccccccccchhhccccc
Confidence            1   122                                   344455555544332221   11222355666666554


Q ss_pred             cc--CCC---CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEeccCCcccccCCc
Q 047152          512 GP--IPP---LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLANNNFFGKIPN  585 (776)
Q Consensus       512 g~--~p~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~  585 (776)
                      ..  .+.   ...+++.+++..|.+....+ .+..+++|+.+++++|+.....+ ..+..+++++.++++.|.+.+..|.
T Consensus       385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~  463 (635)
T 4g8a_A          385 FKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  463 (635)
T ss_dssp             EEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             cccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence            32  221   14567777777777665433 45557777777777776665444 3466777777777777777777776


Q ss_pred             cccccCCCcEEecCCCcccccccccccccEEEccCCCC-ccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCee
Q 047152          586 SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKL-GGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFL  664 (776)
Q Consensus       586 ~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  664 (776)
                      .+..++.+                    ++|++++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++|++|
T Consensus       464 ~~~~~~~L--------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          464 IFNGLSSL--------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             TTTTCTTC--------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccchhh--------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence            66666555                    7889999974 45678899999999999999999999999999999999999


Q ss_pred             eCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-Ccc-cccccccccCCCCCCCCCC
Q 047152          665 DLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQL-QSFNELVYAGNPELCGLPL  724 (776)
Q Consensus       665 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~~~~~~~~gN~~lc~~~l  724 (776)
                      +|++|++++..|..|..+++|++||+++|++++..|.. ..+ .++..+.++|||+.|+|.+
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99999999999999999999999999999999988865 223 5788899999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-44  Score=409.35  Aligned_cols=491  Identities=22%  Similarity=0.204  Sum_probs=295.3

Q ss_pred             EEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCE
Q 047152           86 NKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF  165 (776)
Q Consensus        86 ~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  165 (776)
                      +.+++++     +++++ +|..+.  ++|++|++++|.+++. .|..|.++++|++|+|++|++++..|..|+++++|++
T Consensus        34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            6777777     45553 555443  6788888888888764 5567788888888888888887776777778888888


Q ss_pred             EeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEE
Q 047152          166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID  245 (776)
Q Consensus       166 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~  245 (776)
                      |++++|++..  .+..  .+++|++|++++|.+++++ ++..++++++|++|++++|.+++.   .+..+..+ +|++|+
T Consensus       105 L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~  175 (562)
T 3a79_B          105 LDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCIL  175 (562)
T ss_dssp             EECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEE
T ss_pred             EECCCCcCCc--cCcc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEE
Confidence            8888887752  2222  6667777777777666542 234566666666666666665542   23333111 225555


Q ss_pred             cCCCCC--CCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCc
Q 047152          246 LTENNL--TNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKE  323 (776)
Q Consensus       246 Ls~n~l--~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~  323 (776)
                      +++|.+  ++..|..+..+... .-.++++.|.+.+.++.                      ..+..+++|+.+++++|.
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~-~l~l~l~~n~~~~~~~~----------------------~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTT-VLHLVFHPNSLFSVQVN----------------------MSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEE-EEEEEECSSSCCCCCCE----------------------EEESSEEEEEEEEEECCS
T ss_pred             eecccccccccCcccccccCcc-eEEEEecCccchhhhhh----------------------hcccccceEEEecccccc
Confidence            555555  44444443333210 11233344443332221                      123334444444444443


Q ss_pred             CC----CccchHHhhccCCCcCCCccEEEcccccccccC----CCccCCCCCCEEeccCccccccchhcc-----cCCCC
Q 047152          324 LK----GQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM----PNLGEFSSLKQLNLENNLLNGTIHKSI-----GQLFK  390 (776)
Q Consensus       324 l~----~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~  390 (776)
                      ..    ......+..++      +|+.+++.++.+.+..    +.....++|++|++++|.++|.+|..+     ..++.
T Consensus       233 ~~~~~l~~~~~~l~~l~------~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          233 ENCQRLMTFLSELTRGP------TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             TTHHHHHHHHHHHHSCS------SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             cccchHHHHHHHHhccC------cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence            11    00111222232      4444444444333211    001112345555555555555444444     33334


Q ss_pred             CcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhh
Q 047152          391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD  470 (776)
Q Consensus       391 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~  470 (776)
                      |+.++++.|.+  .+|...+..+                                                       + 
T Consensus       307 L~~~~~~~~~~--~~p~~~~~~~-------------------------------------------------------~-  328 (562)
T 3a79_B          307 LMIEHVKNQVF--LFSKEALYSV-------------------------------------------------------F-  328 (562)
T ss_dssp             EEEEEEEECCC--SSCHHHHHHH-------------------------------------------------------H-
T ss_pred             eehhhccccee--ecChhhhhhh-------------------------------------------------------h-
Confidence            44444444433  2222111111                                                       0 


Q ss_pred             ccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEEC
Q 047152          471 LTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDL  550 (776)
Q Consensus       471 ~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  550 (776)
                      ...+++.|++++|.+...                        ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus       329 ~~~~L~~L~l~~n~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  384 (562)
T 3a79_B          329 AEMNIKMLSISDTPFIHM------------------------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL  384 (562)
T ss_dssp             HTCCCSEEEEESSCCCCC------------------------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred             ccCcceEEEccCCCcccc------------------------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence            001233344443333210                        01123567888888888888888888888999999999


Q ss_pred             cCCcccc--cCChhhhCCCCCcEEeccCCcccccCCcc-ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCC
Q 047152          551 SNNLLSG--KLPDCWFQFDSLVILNLANNNFFGKIPNS-MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGV  627 (776)
Q Consensus       551 s~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  627 (776)
                      ++|++++  .+|..+.++++|++|++++|++++.+|.. +..+++|                    ++|++++|++++.+
T Consensus       385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~  444 (562)
T 3a79_B          385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI--------------------LVLNLSSNMLTGSV  444 (562)
T ss_dssp             CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------CEEECCSSCCCGGG
T ss_pred             CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------CEEECCCCCCCcch
Confidence            9999986  34567899999999999999999856653 5555555                    78999999999888


Q ss_pred             chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc-CcCCCCCCeeeCCCCcceecCCCCCccc
Q 047152          628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-LSQLSGLSVMDLSYNNLSGKIPLGTQLQ  706 (776)
Q Consensus       628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~  706 (776)
                      |..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|++|++++|+++|.+|....+.
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred             hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence            87665  78999999999999 78988889999999999999999 56665 9999999999999999999887533222


Q ss_pred             cc---ccccccCCCCCCCCCCCCCCCC
Q 047152          707 SF---NELVYAGNPELCGLPLRNKCPD  730 (776)
Q Consensus       707 ~~---~~~~~~gN~~lc~~~l~~~c~~  730 (776)
                      .+   ....+. +..-|+++....|..
T Consensus       521 ~~~~~~~~~~~-~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          521 EWINKHSGVVR-NSAGSVAPDSAKCSG  546 (562)
T ss_dssp             HHHHHTTTTEE-CSSSSBCSSSSCBSS
T ss_pred             HHHHhcCCccc-ccccCCCCCCCccCC
Confidence            11   111121 223346666667865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.8e-42  Score=393.15  Aligned_cols=456  Identities=21%  Similarity=0.245  Sum_probs=296.7

Q ss_pred             CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152          185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS  264 (776)
Q Consensus       185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  264 (776)
                      +...+++++++|+++.++   ..+.  ++|++|++++|.+++..+..+.++   ++|++|++++|++++..|..+.++++
T Consensus        30 ~~~~~~l~ls~~~L~~ip---~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVP---KDLP--PRTKALSLSQNSISELRMPDISFL---SELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCCCSCC---TTSC--TTCCEEECCSSCCCCCCGGGTTTC---TTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCCccCC---CCCC--CCcCEEECCCCCccccChhhhccC---CCccEEECCCCCCCcCCHHHhCCCCC
Confidence            334477888888877753   2222  677777777777777777777776   77777777777777666666777777


Q ss_pred             CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC--chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCC
Q 047152          265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI--PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN  342 (776)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i--p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~  342 (776)
                        |++|++++|+++ .+|..  .+++|++|++++|+++++  |..++++++|++|++++|.+++.   .+..++      
T Consensus       102 --L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~------  167 (562)
T 3a79_B          102 --LEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA------  167 (562)
T ss_dssp             --CCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT------
T ss_pred             --CCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh------
Confidence              777777777776 34444  677777777777777763  36677777777777777776652   233333      


Q ss_pred             Cc--cEEEcccccc--cccCCC-ccCCC-CCCEEeccCccccccchh-cccCCCCCcEEECCCcc-----ccccccHHhh
Q 047152          343 SL--EWLHLSSNEI--TGSMPN-LGEFS-SLKQLNLENNLLNGTIHK-SIGQLFKLEMLKLNGNS-----LGGVISEALF  410 (776)
Q Consensus       343 ~L--~~L~L~~n~l--~~~~~~-l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~N~-----l~~~~~~~~~  410 (776)
                      +|  ++|++++|.+  ++..|. +..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.     +.+.++  .+
T Consensus       168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l  245 (562)
T 3a79_B          168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--EL  245 (562)
T ss_dssp             TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HH
T ss_pred             hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HH
Confidence            34  7777777766  555444 33322 111446666666654433 34456667777776664     222222  35


Q ss_pred             hCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152          411 SNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP  490 (776)
Q Consensus       411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p  490 (776)
                      ..+++|+.++++++.+.+...                        ..      ++...+  ..++++|++++|.++|.+|
T Consensus       246 ~~l~~L~~L~L~~~~l~~~~~------------------------~~------~~~~~~--~~~L~~L~l~~n~l~~~ip  293 (562)
T 3a79_B          246 TRGPTLLNVTLQHIETTWKCS------------------------VK------LFQFFW--PRPVEYLNIYNLTITERID  293 (562)
T ss_dssp             HSCSSCEEEEEEEEEECHHHH------------------------HH------HHHHHT--TSSEEEEEEEEEEECSCCC
T ss_pred             hccCcceEEEecCCcCcHHHH------------------------HH------HHHhhh--cccccEEEEeccEeecccc
Confidence            566666666666555432110                        00      000110  1245566666666665555


Q ss_pred             cccc----cccCCCCeEeccCCcccccCCCC-------CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccC
Q 047152          491 DLSL----RFDISGPGIDISSNHFEGPIPPL-------PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL  559 (776)
Q Consensus       491 ~~~~----~~~~~l~~l~l~~n~l~g~~p~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  559 (776)
                      ...+    .....+..++++.+.+  .+|..       ..++++|++++|.+.....  ...+++|++|++++|++++.+
T Consensus       294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  369 (562)
T 3a79_B          294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSV  369 (562)
T ss_dssp             CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTT
T ss_pred             chhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccch
Confidence            5211    1111112233333333  22210       1457788888877754321  245677888888888888777


Q ss_pred             ChhhhCCCCCcEEeccCCccccc--CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCch-hhhcccc
Q 047152          560 PDCWFQFDSLVILNLANNNFFGK--IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK-EIMDLVG  636 (776)
Q Consensus       560 p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~  636 (776)
                      |..+.++++|++|++++|++++.  +|..+..+++|                    ++|++++|++++.+|. .+..+++
T Consensus       370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--------------------~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL--------------------ETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC--------------------CEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC--------------------CEEECCCCcCCCccChhhhcCccc
Confidence            77778888888888888887752  23445555555                    8899999999985665 4888999


Q ss_pred             CCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC--Cccccccccccc
Q 047152          637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYA  714 (776)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~  714 (776)
                      |++|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+..+.++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            99999999999988887665  79999999999998 78888889999999999999999 56753  456778888999


Q ss_pred             CCCCCCCCCC
Q 047152          715 GNPELCGLPL  724 (776)
Q Consensus       715 gN~~lc~~~l  724 (776)
                      +||+.|+|++
T Consensus       506 ~N~~~c~c~~  515 (562)
T 3a79_B          506 DNPWDCTCPG  515 (562)
T ss_dssp             SCCBCCCHHH
T ss_pred             CCCcCCCcch
Confidence            9999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.4e-42  Score=377.64  Aligned_cols=416  Identities=25%  Similarity=0.289  Sum_probs=219.2

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL  188 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  188 (776)
                      .+.++|++|++++|.+ + .+|..++++++|++|++++|++.|.+|.+++++++|+++++.+|..            .++
T Consensus         8 ~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l   73 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQA   73 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTC
T ss_pred             cccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCC
Confidence            3568899999999999 4 4899999999999999999999999999999999888777766532            456


Q ss_pred             cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152          189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD  268 (776)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~  268 (776)
                      ++|++++|.+++++.+      .++|++|++++|.+++ +|..   .   ++|++|++++|++++ ++            
T Consensus        74 ~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~---~~L~~L~l~~n~l~~-l~------------  127 (454)
T 1jl5_A           74 HELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---P---QSLKSLLVDNNNLKA-LS------------  127 (454)
T ss_dssp             SEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---C---TTCCEEECCSSCCSC-CC------------
T ss_pred             CEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc---c---CCCcEEECCCCccCc-cc------------
Confidence            7777777777765432      2466666666666665 3321   1   455556665555543 11            


Q ss_pred             EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEE
Q 047152          269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH  348 (776)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~  348 (776)
                                    ..   .++|++|++++|+++++| .++++++|++|++++|.+++ +|..+   .      +|++|+
T Consensus       128 --------------~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~------~L~~L~  179 (454)
T 1jl5_A          128 --------------DL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P------SLEFIA  179 (454)
T ss_dssp             --------------SC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---T------TCCEEE
T ss_pred             --------------CC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---c------cccEEE
Confidence                          10   134555555555555554 35555555555555555543 22111   1      566666


Q ss_pred             cccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152          349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       349 L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      +++|++++ +|.++.+++|++|++++|.+++ +|..   .++|++|++++|.++ .+|.  +..+++|++|++++|++++
T Consensus       180 L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          180 AGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS
T ss_pred             CcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc
Confidence            66666665 3456666677777777776664 3322   246677777777665 4443  5666666666666666553


Q ss_pred             ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152          429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN  508 (776)
Q Consensus       429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n  508 (776)
                      . +..                                      .++|+.|++++|+++                      
T Consensus       252 l-~~~--------------------------------------~~~L~~L~l~~N~l~----------------------  270 (454)
T 1jl5_A          252 L-PDL--------------------------------------PPSLEALNVRDNYLT----------------------  270 (454)
T ss_dssp             C-CSC--------------------------------------CTTCCEEECCSSCCS----------------------
T ss_pred             c-ccc--------------------------------------ccccCEEECCCCccc----------------------
Confidence            1 100                                      123444444444443                      


Q ss_pred             cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCC-CCCcEEeccCCcccccCCccc
Q 047152          509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSLVILNLANNNFFGKIPNSM  587 (776)
Q Consensus       509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~  587 (776)
                         + +|..+++|++|++++|++++...    ..++|++|++++|++++ ++    .+ ++|++|++++|++++ +|.. 
T Consensus       271 ---~-l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-  335 (454)
T 1jl5_A          271 ---D-LPELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-  335 (454)
T ss_dssp             ---C-CCCCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred             ---c-cCcccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-
Confidence               2 33334678888888888887321    12678999999999885 22    23 588999999998885 5543 


Q ss_pred             cccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccC--cCcccccCcCCCCeee
Q 047152          588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG--QITPKIGQLKSLDFLD  665 (776)
Q Consensus       588 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~  665 (776)
                        +++                    |++|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++.+       
T Consensus       336 --~~~--------------------L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L-------  382 (454)
T 1jl5_A          336 --PPR--------------------LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL-------  382 (454)
T ss_dssp             --CTT--------------------CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE-------
T ss_pred             --CCc--------------------CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh-------
Confidence              233                    478888999888 5665   47889999999999987  677665533       


Q ss_pred             CcCceeeecCCccCcCCCCCCeeeCCCCccee--cCCCCCcccccccccccCCCC
Q 047152          666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG--KIPLGTQLQSFNELVYAGNPE  718 (776)
Q Consensus       666 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gN~~  718 (776)
                       +.|++.|.+|..   +++|++|++++|+++|  .+|.     ++..+.+.+|..
T Consensus       383 -~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~  428 (454)
T 1jl5_A          383 -RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERV  428 (454)
T ss_dssp             -ECCC--------------------------------------------------
T ss_pred             -hhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhheeCcCccc
Confidence             346777777764   4678888888888887  6663     344445555533

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-39  Score=361.48  Aligned_cols=144  Identities=25%  Similarity=0.190  Sum_probs=127.7

Q ss_pred             CCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152          542 SNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN  621 (776)
Q Consensus       542 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N  621 (776)
                      .++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|                    ++|++++|
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------~~L~Ls~N  333 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------LKLNLSQN  333 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------CEEECCSS
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC--------------------CEEECCCC
Confidence            3578888888888888888888888999999999999988888888777776                    67889999


Q ss_pred             CCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      ++++..|..++++++|++|+|++|++++..|..++.+++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99888889999999999999999999988899999999999999999999987777889999999999999999999996


Q ss_pred             CCcc
Q 047152          702 GTQL  705 (776)
Q Consensus       702 ~~~~  705 (776)
                      ...+
T Consensus       414 ~~~l  417 (455)
T 3v47_A          414 IDYL  417 (455)
T ss_dssp             THHH
T ss_pred             chHH
Confidence            5443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.4e-41  Score=352.16  Aligned_cols=293  Identities=29%  Similarity=0.441  Sum_probs=227.0

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC--ccceeeCCCC--CcEEEEECCCCCCCCCCCce--eccccc
Q 047152           35 RCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCK--WTGVGCSKRT--GHVNKLDLQPIGFDSFPLRG--KITPAL  108 (776)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~l~g--~~~~~l  108 (776)
                      .|.++|++||++||+++.+|. .+.+|.   .+.+||.  |.||+|+..+  ++|++|++++     +.+.|  .+|+.+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~~~~~~~l   72 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSSL   72 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCCcccChhH
Confidence            599999999999999998886 789997   4678998  9999998655  8999999999     67888  889999


Q ss_pred             cCCCCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          109 LKLQHLTYLDLSR-NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       109 ~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      .++++|++|++++ |.+.+. +|..++++++|++|++++|++++.+|..|+++++|++|++++|.+.+ ..+..++++++
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~  150 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPN  150 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTT
T ss_pred             hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCC
Confidence            9999999999995 888875 89999999999999999999998899889899999999998888764 33444444444


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCC-CccEEEcCCCCCCCCchhhHhhcCCCC
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSN-SLEVIDLTENNLTNSVYPWLFNVSSSL  266 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~  266 (776)
                      |++|++                          ++|++++.+|..+..+   + +|++|++++|++++.+|..+..++   
T Consensus       151 L~~L~L--------------------------~~N~l~~~~p~~l~~l---~~~L~~L~L~~N~l~~~~~~~~~~l~---  198 (313)
T 1ogq_A          151 LVGITF--------------------------DGNRISGAIPDSYGSF---SKLFTSMTISRNRLTGKIPPTFANLN---  198 (313)
T ss_dssp             CCEEEC--------------------------CSSCCEEECCGGGGCC---CTTCCEEECCSSEEEEECCGGGGGCC---
T ss_pred             CCeEEC--------------------------cCCcccCcCCHHHhhh---hhcCcEEECcCCeeeccCChHHhCCc---
Confidence            444444                          4444444455555555   3 566666666666666666555553   


Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      |+.|++++|++++.+|..+..+++|++|++++|.+++.+..+..+++|++|++++|.+++.+|..+..++      +|++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~~  272 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS  272 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc------CCCE
Confidence            6777777777777777778888888888888888877444577777888888888888777777777776      7777


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCcc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNL  376 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~  376 (776)
                      |++++|++++.+|....+++|+.+++++|.
T Consensus       273 L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             EECcCCcccccCCCCccccccChHHhcCCC
Confidence            777777777777776777777777777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-39  Score=357.74  Aligned_cols=407  Identities=23%  Similarity=0.281  Sum_probs=199.3

Q ss_pred             CcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCC-------------CEEecCCCCC
Q 047152           83 GHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKL-------------SYLGLSSAEF  149 (776)
Q Consensus        83 ~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~~L~Ls~n~l  149 (776)
                      .+++++++++     +.+ |.+|++++++++|++|++++|.+.+. +|..++++++|             ++|++++|.+
T Consensus        11 ~~L~~L~l~~-----n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A           11 TFLQEPLRHS-----SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccchhhhccc-----Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            4788899998     677 89999999999999999999999885 99999998875             7888888877


Q ss_pred             CCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc
Q 047152          150 AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP  229 (776)
Q Consensus       150 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  229 (776)
                      ++ +|..   .++|++|++++|.+.+  .+.   ..++|++|++++|.+++++.++      ++|++|++++|++++ +|
T Consensus        84 ~~-lp~~---~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           84 SS-LPEL---PPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             SC-CCSC---CTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSS-CC
T ss_pred             cc-CCCC---cCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCC-Cc
Confidence            74 4432   3677777777777753  222   2366777777777766643221      456666666666655 33


Q ss_pred             hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhc
Q 047152          230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLG  309 (776)
Q Consensus       230 ~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~  309 (776)
                       .++++   ++|++|++++|++++ +|                          ..   ..+|++|++++|.++++| .++
T Consensus       148 -~~~~l---~~L~~L~l~~N~l~~-lp--------------------------~~---~~~L~~L~L~~n~l~~l~-~~~  192 (454)
T 1jl5_A          148 -ELQNS---SFLKIIDVDNNSLKK-LP--------------------------DL---PPSLEFIAAGNNQLEELP-ELQ  192 (454)
T ss_dssp             -CCTTC---TTCCEEECCSSCCSC-CC--------------------------CC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred             -ccCCC---CCCCEEECCCCcCcc-cC--------------------------CC---cccccEEECcCCcCCcCc-ccc
Confidence             34444   555555555555543 22                          21   135566666666665555 355


Q ss_pred             ccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC
Q 047152          310 NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF  389 (776)
Q Consensus       310 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  389 (776)
                      .+++|++|++++|.+++. |..   .+      +|++|++++|.++ .+|.++.+++|++|++++|++++ +|..   ++
T Consensus       193 ~l~~L~~L~l~~N~l~~l-~~~---~~------~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~  257 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKKL-PDL---PL------SLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PP  257 (454)
T ss_dssp             TCTTCCEEECCSSCCSSC-CCC---CT------TCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CT
T ss_pred             CCCCCCEEECCCCcCCcC-CCC---cC------cccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---cc
Confidence            666666666666665542 211   11      6788888888777 45567788888888888888875 3432   36


Q ss_pred             CCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhh
Q 047152          390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFW  469 (776)
Q Consensus       390 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~  469 (776)
                      +|++|++++|++++ +|.    ..++|++|++++|++++...                      +               
T Consensus       258 ~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~----------------------~---------------  295 (454)
T 1jl5_A          258 SLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSE----------------------L---------------  295 (454)
T ss_dssp             TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEESC----------------------C---------------
T ss_pred             ccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcccC----------------------c---------------
Confidence            78888888888765 343    13566777776666653110                      0               


Q ss_pred             hccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEE
Q 047152          470 DLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLD  549 (776)
Q Consensus       470 ~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  549 (776)
                        .+++++|++++|++                                              ++..    ...++|++|+
T Consensus       296 --~~~L~~L~l~~N~l----------------------------------------------~~i~----~~~~~L~~L~  323 (454)
T 1jl5_A          296 --PPNLYYLNASSNEI----------------------------------------------RSLC----DLPPSLEELN  323 (454)
T ss_dssp             --CTTCCEEECCSSCC----------------------------------------------SEEC----CCCTTCCEEE
T ss_pred             --CCcCCEEECcCCcC----------------------------------------------Cccc----CCcCcCCEEE
Confidence              01233333333333                                              2210    0013455555


Q ss_pred             CcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCcc--CC
Q 047152          550 LSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG--GV  627 (776)
Q Consensus       550 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~  627 (776)
                      +++|++++ +|..   +++|++|++++|+++ .+|.   .+++|                    ++|++++|++++  .+
T Consensus       324 Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L--------------------~~L~L~~N~l~~l~~i  375 (454)
T 1jl5_A          324 VSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL--------------------KQLHVEYNPLREFPDI  375 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC--------------------CEEECCSSCCSSCCCC
T ss_pred             CCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc--------------------cEEECCCCCCCcCCCC
Confidence            55555553 3332   356666666666665 3443   12333                    566677777766  55


Q ss_pred             chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee--cCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG--GIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      |..++.+        +.|++.|.+|..   +++|++||+++|++++  .+|.+      ++.|++.+|.+.+++|.
T Consensus       376 p~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          376 PESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             CTTCCEE--------ECCC---------------------------------------------------------
T ss_pred             hHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            6554432        346666667653   4678888888888886  56644      45667888888877664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.8e-38  Score=348.78  Aligned_cols=357  Identities=24%  Similarity=0.269  Sum_probs=235.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCC-CccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI-PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY  190 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  190 (776)
                      ++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ |..|.++++|++|++++|++.. ..+..++++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCE
Confidence            5666666666666653 4566666666666666666665444 3456666666666666666653 34455666666777


Q ss_pred             EEccCCCCCCcchhhHh--hcCCCCCCEEEccCCCCCCCCchh-hhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          191 LYLDLNDLSNFSNWVQL--LSKLHSLTTLSLYSCDLPPIIPSS-LLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       191 L~Ls~n~l~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++++|.+++.  .+..  ++++++|++|++++|.+.+..|.. +.++   ++|++|++++|++.+..+..+..+....+
T Consensus       108 L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          108 LTLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM---RRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             EECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC---TTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             EeCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCC---CcccEEeCCCCcccccChhhhhccccccc
Confidence            77766666652  2222  666667777777777766665554 5556   66777777777766666666665533336


Q ss_pred             CEEEccCCccccCcchh--------hcCCCCCCEEEccCCCCCC-Cchhhccc---CCCcEEeccCCcCCCc--------
Q 047152          268 DRISLPSNQLQGSIPEA--------FGRMVSLRYLDLSSNELRG-IPKFLGNM---CGLKILYLSGKELKGQ--------  327 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~-ip~~l~~l---~~L~~L~Ls~n~l~~~--------  327 (776)
                      +.|++++|.+.+..+..        +..+++|++|++++|.+++ +|..+...   ++|+.|++++|.+.+.        
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence            67777777666544332        2245667777777777766 55544433   6677777776644332        


Q ss_pred             --cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccc
Q 047152          328 --LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV  404 (776)
Q Consensus       328 --~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  404 (776)
                        .+..+..+.    .++|++|++++|.+++..|. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       263 ~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  338 (455)
T 3v47_A          263 DPDNFTFKGLE----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI  338 (455)
T ss_dssp             CCCTTTTGGGT----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cCccccccccc----ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence              111222211    12688888888888877666 77788888888888888877777788888888888888888665


Q ss_pred             ccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEccccc
Q 047152          405 ISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ  484 (776)
Q Consensus       405 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~  484 (776)
                      .+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.           .+..+++|++|++++|.
T Consensus       339 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          339 DSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-----------IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----------TTTTCTTCCEEECCSSC
T ss_pred             Chh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-----------HhccCCcccEEEccCCC
Confidence            554 677788888888888888877777788888888888888877643222           22334578888888888


Q ss_pred             CcccCCc
Q 047152          485 MRGKVPD  491 (776)
Q Consensus       485 l~g~~p~  491 (776)
                      +++.+|.
T Consensus       407 l~~~~~~  413 (455)
T 3v47_A          407 WDCSCPR  413 (455)
T ss_dssp             BCCCTTT
T ss_pred             cccCCCc
Confidence            8888775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3e-36  Score=333.06  Aligned_cols=158  Identities=17%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      +.+++++|++++..+..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|.+.
T Consensus       236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          236 TYFDCSVNPLTELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             CEEEeeCCcCCCcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence            33444444444433334566777776654              35567777777777766  456778888888888877


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      +.+|..   ..+|+.|+++++         ++|++|++++|++++ ++  ++++++|+.|++++|++++        ++.
T Consensus       300 ~~l~~~---~~~L~~L~l~~~---------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~  356 (457)
T 3bz5_A          300 YLLDCQ---AAGITELDLSQN---------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSS  356 (457)
T ss_dssp             CEEECT---TCCCSCCCCTTC---------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred             ceeccC---CCcceEechhhc---------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccc
Confidence            777743   345555555443         678999999999997 43  8999999999999999986        356


Q ss_pred             CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152          661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      |+.|++++|+++|.     .++..|+.+++++|+++|.||..
T Consensus       357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            78889999999987     24567888999999999999964

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.4e-36  Score=331.78  Aligned_cols=366  Identities=19%  Similarity=0.170  Sum_probs=194.9

Q ss_pred             CCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC
Q 047152          147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP  226 (776)
Q Consensus       147 n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  226 (776)
                      ....+..+..++++++|++|++++|.+.+  . +.++.+++|++|++++|.+++++     ++.+++|++|++++|.+++
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCce
Confidence            33444555667778888888888887764  2 35777788888888888777742     6677777777777777766


Q ss_pred             CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cc
Q 047152          227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IP  305 (776)
Q Consensus       227 ~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip  305 (776)
                      . +  ++++   ++|++|++++|++++. +  +..+++  |++|++++|++++. +  ++.+++|++|++++|...+ + 
T Consensus       100 ~-~--~~~l---~~L~~L~L~~N~l~~l-~--~~~l~~--L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-  164 (457)
T 3bz5_A          100 L-D--VTPL---TKLTYLNCDTNKLTKL-D--VSQNPL--LTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-  164 (457)
T ss_dssp             C-C--CTTC---TTCCEEECCSSCCSCC-C--CTTCTT--CCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-
T ss_pred             e-e--cCCC---CcCCEEECCCCcCCee-c--CCCCCc--CCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-
Confidence            4 2  4444   6666666666666542 2  444444  55555555555542 1  4445555555555553222 3 


Q ss_pred             hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcc
Q 047152          306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSI  385 (776)
Q Consensus       306 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  385 (776)
                       .+..+++|++|++++|.+++.                               | +..+++|+.|++++|++++.   .+
T Consensus       165 -~~~~l~~L~~L~ls~n~l~~l-------------------------------~-l~~l~~L~~L~l~~N~l~~~---~l  208 (457)
T 3bz5_A          165 -DVTPQTQLTTLDCSFNKITEL-------------------------------D-VSQNKLLNRLNCDTNNITKL---DL  208 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCCCC-------------------------------C-CTTCTTCCEEECCSSCCSCC---CC
T ss_pred             -ccccCCcCCEEECCCCcccee-------------------------------c-cccCCCCCEEECcCCcCCee---cc
Confidence             233444444444444444432                               2 34444444444444444432   24


Q ss_pred             cCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCC
Q 047152          386 GQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP  465 (776)
Q Consensus       386 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p  465 (776)
                      +.+++|++|++++|++++ +|   +..+++|++|++++|++++..   ...+.+|+.++++.|+                
T Consensus       209 ~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~----------------  265 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD----------------  265 (457)
T ss_dssp             TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC----------------
T ss_pred             ccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC----------------
Confidence            444444455555554443 22   334444455555444444321   1122223333322221                


Q ss_pred             chhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC-CCCCcEEEccCCccccCCCccccCCCC
Q 047152          466 NWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL-PSNATSLNLSKNKFSGSISFLCSLSNR  544 (776)
Q Consensus       466 ~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~  544 (776)
                               ++.+++++|.+.                         |.+|.. +++|+.|++++|...+.+|.   ..++
T Consensus       266 ---------L~~L~l~~n~~~-------------------------~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~  308 (457)
T 3bz5_A          266 ---------LLEIDLTHNTQL-------------------------IYFQAEGCRKIKELDVTHNTQLYLLDC---QAAG  308 (457)
T ss_dssp             ---------CSCCCCTTCTTC-------------------------CEEECTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred             ---------CCEEECCCCccC-------------------------CcccccccccCCEEECCCCcccceecc---CCCc
Confidence                     222333333333                         333321 34555555555554444432   1233


Q ss_pred             ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152          545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG  624 (776)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  624 (776)
                      |+.|++++|             ++|++|++++|++++. +  ++.+++|                    +.||+++|+++
T Consensus       309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L--------------------~~L~l~~N~l~  352 (457)
T 3bz5_A          309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL--------------------KSLSCVNAHIQ  352 (457)
T ss_dssp             CSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC--------------------SEEECCSSCCC
T ss_pred             ceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC--------------------cEEECCCCCCC
Confidence            444444433             4666777777776652 2  4545444                    56677777776


Q ss_pred             cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc
Q 047152          625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS  680 (776)
Q Consensus       625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  680 (776)
                      +        ++.|..|++++|+++|.     +.+..|+.+++++|+++|.+|..+.
T Consensus       353 ~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          353 D--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             B--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             C--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            4        23455566777777764     3556677778888888888876553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=335.43  Aligned_cols=345  Identities=18%  Similarity=0.186  Sum_probs=199.4

Q ss_pred             EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEe
Q 047152          293 YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLN  371 (776)
Q Consensus       293 ~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~  371 (776)
                      .++.+++.++.+|..+.  +++++|++++|.+++..+..|..++      +|++|+|++|.+++..|. +.++++|++|+
T Consensus        15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFP------HLEELELNENIVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCC------CCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence            45555555555554432  3555666666665555555555555      566666666666655444 56666666666


Q ss_pred             ccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152          372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       372 Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      +++|.+++..+..|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+.+|+.|++++|+++
T Consensus        87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            666666654445556666666666666666555444 4666666666666666666665555655555555555555554


Q ss_pred             CCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCcc
Q 047152          452 PRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKF  531 (776)
Q Consensus       452 ~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l  531 (776)
                      +..+..+           ..+                                              ++|+.|++++|.+
T Consensus       166 ~~~~~~l-----------~~l----------------------------------------------~~L~~L~l~~n~i  188 (477)
T 2id5_A          166 SIPTEAL-----------SHL----------------------------------------------HGLIVLRLRHLNI  188 (477)
T ss_dssp             SCCHHHH-----------TTC----------------------------------------------TTCCEEEEESCCC
T ss_pred             ccChhHh-----------ccc----------------------------------------------CCCcEEeCCCCcC
Confidence            2211111           112                                              3344444444444


Q ss_pred             ccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccc
Q 047152          532 SGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLG  611 (776)
Q Consensus       532 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~  611 (776)
                      ++..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|                  
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------  250 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------------  250 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------------
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------------
Confidence            44444445555666666666666655555555555566666666666663333344444444                  


Q ss_pred             cccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152          612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS  691 (776)
Q Consensus       612 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  691 (776)
                        +.|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus       251 --~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          251 --RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             --CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             --CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence              556666666666666666666677777777777766666666667777777777777766555566666677777777


Q ss_pred             CCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          692 YNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       692 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      +|++.|.++....+.......+.++...|..|
T Consensus       329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             SSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            77776655433222223334455555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-34  Score=321.60  Aligned_cols=81  Identities=25%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCC
Q 047152          160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSN  239 (776)
Q Consensus       160 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  239 (776)
                      ++++++|+++++.+..   .+.+..+++|++|++++|.+++.+   . +.++++|++|++++|.+.+..+  +.++   +
T Consensus        45 l~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~~~--~~~l---~  112 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDIT---P-LKNLTKLVDILMNNNQIADITP--LANL---T  112 (466)
T ss_dssp             HHTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG--GTTC---T
T ss_pred             hccccEEecCCCCCcc---CcchhhhcCCCEEECCCCccCCch---h-hhccccCCEEECCCCccccChh--hcCC---C
Confidence            4566666666666532   233555566666666666555532   1 4555555555555555544333  3333   4


Q ss_pred             CccEEEcCCCCCC
Q 047152          240 SLEVIDLTENNLT  252 (776)
Q Consensus       240 ~L~~L~Ls~n~l~  252 (776)
                      +|++|++++|.++
T Consensus       113 ~L~~L~L~~n~l~  125 (466)
T 1o6v_A          113 NLTGLTLFNNQIT  125 (466)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCCEEECCCCCCC
Confidence            4444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-34  Score=320.68  Aligned_cols=147  Identities=24%  Similarity=0.336  Sum_probs=100.8

Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEec
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL  598 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  598 (776)
                      ++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..|  +..+++|     
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-----  311 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL-----  311 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-----
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-----
Confidence            345555555555554433  4556777777777777765433  6677777777777777765433  4444444     


Q ss_pred             CCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc
Q 047152          599 YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS  678 (776)
Q Consensus       599 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  678 (776)
                                     +.|++++|++++..|  ++.+++|++|++++|++++.  ..++.+++|+.|++++|++++..|  
T Consensus       312 ---------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  370 (466)
T 1o6v_A          312 ---------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--  370 (466)
T ss_dssp             ---------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred             ---------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence                           667777777776555  67778888888888888753  467778888888888888877766  


Q ss_pred             CcCCCCCCeeeCCCCccee
Q 047152          679 LSQLSGLSVMDLSYNNLSG  697 (776)
Q Consensus       679 l~~l~~L~~L~ls~N~l~g  697 (776)
                      +..+++|+.|++++|++++
T Consensus       371 ~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCCEEEEC
T ss_pred             hhcCCCCCEEeccCCcccC
Confidence            7777888888888888876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=315.38  Aligned_cols=302  Identities=24%  Similarity=0.229  Sum_probs=265.1

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL  191 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  191 (776)
                      +++++|+|++|.+++. .|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++.. .....|.++++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEE
Confidence            5899999999999875 67889999999999999999998889999999999999999999874 444568899999999


Q ss_pred             EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEE
Q 047152          192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS  271 (776)
Q Consensus       192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~  271 (776)
                      ++++|.+...  .+..+.++++|++|++++|.+.+..+..+..+   ++|++|++++|++++..+..+..+++  |+.|+
T Consensus       110 ~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~  182 (477)
T 2id5_A          110 DISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL---NSLEQLTLEKCNLTSIPTEALSHLHG--LIVLR  182 (477)
T ss_dssp             ECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC---TTCCEEEEESCCCSSCCHHHHTTCTT--CCEEE
T ss_pred             ECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccCC---CCCCEEECCCCcCcccChhHhcccCC--CcEEe
Confidence            9999999875  34678899999999999999998888888888   89999999999999877778888888  99999


Q ss_pred             ccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcc
Q 047152          272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS  350 (776)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~  350 (776)
                      +++|.+.+..+..|..+++|++|++++|...+ +|.......+|++|++++|.+++..+..+..++      +|++|+|+
T Consensus       183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls  256 (477)
T 2id5_A          183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV------YLRFLNLS  256 (477)
T ss_dssp             EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT------TCCEEECC
T ss_pred             CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc------ccCeeECC
Confidence            99999998888889999999999999988777 777776777999999999999987777888887      89999999


Q ss_pred             cccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcccee
Q 047152          351 SNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE  429 (776)
Q Consensus       351 ~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  429 (776)
                      +|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+. .|..+++|++|++++|++...
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES-VFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG-GBSCGGGCCEEECCSSCEECS
T ss_pred             CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh-HcCCCcccCEEEccCCCccCc
Confidence            9999877765 88899999999999999988888999999999999999999765444 678889999999999988753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-33  Score=305.79  Aligned_cols=333  Identities=20%  Similarity=0.215  Sum_probs=218.6

Q ss_pred             CCCCCEEEccCCCCCCCchh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCC
Q 047152          288 MVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFS  365 (776)
Q Consensus       288 l~~L~~L~L~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~  365 (776)
                      +++++.|++++|.++.+|.. +..+++|++|++++|.+++..+..+..++      +|++|++++|.+++..|. ++.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcCCC
Confidence            45666666666666665543 45566666666666666555555555555      556666666555555444 45555


Q ss_pred             CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEc
Q 047152          366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISL  445 (776)
Q Consensus       366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  445 (776)
                      +|++|++++|.++...+..+..+++|++|++++|.+++..+. .+..+++|++|++++|++++..   +.          
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~---~~----------  183 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD---LS----------  183 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCC---GG----------
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccc---cc----------
Confidence            555555555555533333345555555555555555443333 3555555555555555544210   11          


Q ss_pred             cCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEE
Q 047152          446 GHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN  525 (776)
Q Consensus       446 ~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~  525 (776)
                                               ..++++.+++++|.+++.-                           ...++++|+
T Consensus       184 -------------------------~l~~L~~L~l~~n~l~~~~---------------------------~~~~L~~L~  211 (390)
T 3o6n_A          184 -------------------------LIPSLFHANVSYNLLSTLA---------------------------IPIAVEELD  211 (390)
T ss_dssp             -------------------------GCTTCSEEECCSSCCSEEE---------------------------CCSSCSEEE
T ss_pred             -------------------------cccccceeecccccccccC---------------------------CCCcceEEE
Confidence                                     1234556666665554210                           123567777


Q ss_pred             ccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccc
Q 047152          526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE  605 (776)
Q Consensus       526 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~  605 (776)
                      +++|+++.....   ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|            
T Consensus       212 l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  274 (390)
T 3o6n_A          212 ASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  274 (390)
T ss_dssp             CCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             CCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence            777776654332   246788888888888753  567888888899998888888778777777766            


Q ss_pred             cccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCC
Q 047152          606 YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL  685 (776)
Q Consensus       606 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  685 (776)
                              ++|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|++|++++|++++. |  +..+++|
T Consensus       275 --------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L  341 (390)
T 3o6n_A          275 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  341 (390)
T ss_dssp             --------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             --------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence                    678888888884 5667778899999999999998 5788888999999999999999854 3  6778899


Q ss_pred             CeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          686 SVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       686 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      +.|++++|++.|.... ..+..+....+.+++..|.++
T Consensus       342 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          342 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            9999999999986432 345566666777888778754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-33  Score=322.49  Aligned_cols=333  Identities=18%  Similarity=0.192  Sum_probs=213.3

Q ss_pred             CCCCCEEEccCCCCCCCchh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCC
Q 047152          288 MVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFS  365 (776)
Q Consensus       288 l~~L~~L~L~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~  365 (776)
                      +.+++.+++++|.+..+|.. +..+++|++|++++|.+++..+..+..++      +|++|+|++|.+++..|. ++.++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCCC
Confidence            34455555555555554432 34455555555555555544444444444      455555555555444443 34445


Q ss_pred             CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEc
Q 047152          366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISL  445 (776)
Q Consensus       366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  445 (776)
                      +|++|++++|.+++..+..|..+++|++|++++|.+                         ++..+..+..+++|++|++
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------------------ERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------CBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------------------CCCChhhhhcCCcCcEEEC
Confidence            555555555554433333344444455555555444                         4444444444444444444


Q ss_pred             cCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEE
Q 047152          446 GHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN  525 (776)
Q Consensus       446 ~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~  525 (776)
                      ++|.+++.-+              ..+++|+.+++++|.+++.-                           .+.+|+.|+
T Consensus       179 ~~N~l~~~~~--------------~~l~~L~~L~l~~n~l~~l~---------------------------~~~~L~~L~  217 (597)
T 3oja_B          179 SSNRLTHVDL--------------SLIPSLFHANVSYNLLSTLA---------------------------IPIAVEELD  217 (597)
T ss_dssp             TTSCCSBCCG--------------GGCTTCSEEECCSSCCSEEE---------------------------CCTTCSEEE
T ss_pred             cCCCCCCcCh--------------hhhhhhhhhhcccCcccccc---------------------------CCchhheee
Confidence            4444432110              11234666666666554210                           124567777


Q ss_pred             ccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccc
Q 047152          526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE  605 (776)
Q Consensus       526 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~  605 (776)
                      +++|.++...+..   .++|+.|+|++|.+++  +..+..+++|+.|++++|.+++..|..|+.+++|            
T Consensus       218 ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------  280 (597)
T 3oja_B          218 ASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  280 (597)
T ss_dssp             CCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             ccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence            7777766544332   2578888888888876  4678888899999999999888888888777776            


Q ss_pred             cccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCC
Q 047152          606 YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL  685 (776)
Q Consensus       606 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  685 (776)
                              +.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|++++. |  +..+++|
T Consensus       281 --------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L  347 (597)
T 3oja_B          281 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  347 (597)
T ss_dssp             --------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             --------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence                    678888888885 6777788999999999999998 6888899999999999999999855 3  6678899


Q ss_pred             CeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          686 SVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       686 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      +.|++++|+++|.++. ..+..+....+.+++..|+.+
T Consensus       348 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          348 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            9999999999987543 456667777788999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.5e-34  Score=299.73  Aligned_cols=187  Identities=33%  Similarity=0.544  Sum_probs=166.6

Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCC-CCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFD-SLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      ++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |    
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L----  199 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L----  199 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C----
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c----
Confidence            3455555666666666666677788999999999999999999999998 999999999999999998887765 5    


Q ss_pred             cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152          598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS  677 (776)
Q Consensus       598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  677 (776)
                                      ++|++++|++++.+|..++.+++|++|+|++|++++.+|. +..+++|++|++++|++++.+|.
T Consensus       200 ----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          200 ----------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             ----------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred             ----------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence                            7899999999999999999999999999999999976665 88999999999999999999999


Q ss_pred             cCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047152          678 SLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKC  728 (776)
Q Consensus       678 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l~~~c  728 (776)
                      .+..+++|++|++++|+++|.+|....+..+..+.+.|||++||.|+. .|
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999999999999999999988999999999999999998876 57

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.5e-33  Score=301.27  Aligned_cols=309  Identities=22%  Similarity=0.264  Sum_probs=241.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCc-cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      ..++++++|++++|.++.  +|. .+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.. ..+..++++++
T Consensus        42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  118 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL  118 (390)
T ss_dssp             GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence            457889999999998874  554 46889999999999999987777789999999999999999875 55567889999


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|.++.++.  ..++++++|++|++++|.+.+..+..+..+   ++|++|++++|++++..   +..+++  +
T Consensus       119 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~---~~~l~~--L  188 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVD---LSLIPS--L  188 (390)
T ss_dssp             CCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSC---TTCCEEECCSSCCSBCC---GGGCTT--C
T ss_pred             CCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCC---CCCCEEECCCCcCCccc---cccccc--c
Confidence            9999999999887532  346889999999999999988888888877   88999999999887642   445666  8


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL  347 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L  347 (776)
                      +.+++++|.+++     +...++|++|++++|.++.+|...  .++|++|++++|.+++.  ..+..++      +|++|
T Consensus       189 ~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L  253 (390)
T 3o6n_A          189 FHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEV  253 (390)
T ss_dssp             SEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT------TCSEE
T ss_pred             ceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC------CccEE
Confidence            889999888775     334568889999999888876533  46888888888888865  4566666      88888


Q ss_pred             EcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcc
Q 047152          348 HLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL  426 (776)
Q Consensus       348 ~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  426 (776)
                      ++++|.+++..|. +..+++|++|++++|++++ +|..+..+++|++|++++|++++ +|. .+..+++|++|++++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VER-NQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGG-GHHHHTTCSEEECCSSCC
T ss_pred             ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCc-cccccCcCCEEECCCCcc
Confidence            8888888877665 7888888888888888874 46666778888888888888864 444 367788888888888888


Q ss_pred             ceecCCCCCCCCCCcEEEccCcCCC
Q 047152          427 TLEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       427 ~~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      +...   +..+++|+.+++++|++.
T Consensus       331 ~~~~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          331 VTLK---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CCCC---CCTTCCCSEEECCSSCEE
T ss_pred             ceeC---chhhccCCEEEcCCCCcc
Confidence            6432   444555666666665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9e-32  Score=287.98  Aligned_cols=284  Identities=26%  Similarity=0.384  Sum_probs=130.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +..+++|++|++++|.+++  ++. +..+++|++|++++|.+++ +| .+.++++|++|++++|.+..   .+.+.++++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~---~~~~~~l~~  133 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD---ISPLANLTK  133 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC---CGGGTTCTT
T ss_pred             hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC---chhhccCCc
Confidence            4555555555555555543  232 5555555555555555543 22 35555555555555555432   122455555


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|.....   +..+..+++|++|++++|.+.+..+  +..+   ++|++|++++|.+.+..+  +..+++  +
T Consensus       134 L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l---~~L~~L~l~~n~l~~~~~--~~~l~~--L  201 (347)
T 4fmz_A          134 MYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP--IANL---TDLYSLSLNYNQIEDISP--LASLTS--L  201 (347)
T ss_dssp             CCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCSEEECTTSCCCCCGG--GGGCTT--C
T ss_pred             eeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchh--hccC---CCCCEEEccCCccccccc--ccCCCc--c
Confidence            55555555533221   1224455555555555555444333  3333   455555555555443222  344444  5


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL  347 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L  347 (776)
                      +.+++++|.+.+..+  +..+++|++|++++|.+++++. +..+++|++|++++|.+++.  ..+..++      +|++|
T Consensus       202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~------~L~~L  270 (347)
T 4fmz_A          202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLT------KLKML  270 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT------TCCEE
T ss_pred             ceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCC------CcCEE
Confidence            555555554443322  4444455555555555544433 44444455555555444432  1233333      44444


Q ss_pred             EcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcc
Q 047152          348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL  426 (776)
Q Consensus       348 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  426 (776)
                      ++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|   +..+++|++|++++|.+
T Consensus       271 ~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          271 NVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred             EccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence            4444444432 334444444444444444444444444444444444444444443322   33444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.6e-31  Score=283.30  Aligned_cols=307  Identities=24%  Similarity=0.376  Sum_probs=267.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +..+++|++|+++++.+..  +| .+..+++|++|++++|++++ +|. +..+++|++|++++|.+..   .+.+.++++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD---ISALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence            5678999999999999984  55 48889999999999999985 444 9999999999999999864   467999999


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|.+.+.+.    +..+++|++|++++|......+. +..+   ++|++|++++|.+.+..+  +..+++  |
T Consensus       112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l---~~L~~L~l~~~~~~~~~~--~~~l~~--L  179 (347)
T 4fmz_A          112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNM---TGLNYLTVTESKVKDVTP--IANLTD--L  179 (347)
T ss_dssp             CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTC---TTCCEEECCSSCCCCCGG--GGGCTT--C
T ss_pred             CCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhC---CCCcEEEecCCCcCCchh--hccCCC--C
Confidence            9999999999998532    88999999999999976665554 6666   999999999999986554  778888  9


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL  347 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L  347 (776)
                      +.|++++|.+.+..+  +..+++|+.|++++|.+++++. +..+++|++|++++|.+++..+  +..++      +|++|
T Consensus       180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L  248 (347)
T 4fmz_A          180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL  248 (347)
T ss_dssp             SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred             CEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence            999999999987544  8899999999999999999766 8899999999999999998765  66676      99999


Q ss_pred             EcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152          348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT  427 (776)
Q Consensus       348 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  427 (776)
                      ++++|.+++. +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+. .+..+++|++|++++|+++
T Consensus       249 ~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          249 EIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCC
T ss_pred             ECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccc
Confidence            9999999864 6689999999999999999965  4588999999999999999877766 7899999999999999999


Q ss_pred             eecCCCCCCCCCCcEEEccCcCCC
Q 047152          428 LEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       428 ~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      +..+  +..+++|+++++++|.++
T Consensus       325 ~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          325 DIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGG--GGGCTTCSEESSSCC---
T ss_pred             cccC--hhhhhccceeehhhhccc
Confidence            8766  778899999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.9e-32  Score=309.37  Aligned_cols=310  Identities=22%  Similarity=0.244  Sum_probs=234.2

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL  188 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  188 (776)
                      ..+++++.|++++|.+... .+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+.. ..+..|+++++|
T Consensus        48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  125 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL  125 (597)
T ss_dssp             GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence            3467888888888888753 34457788889999999888887777788888899999998888875 555667888888


Q ss_pred             cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152          189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD  268 (776)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~  268 (776)
                      ++|++++|.++.++  +..++++++|++|++++|.+.+..|..+..+   ++|++|++++|.+++..   +..+++  |+
T Consensus       126 ~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~---~~~l~~--L~  195 (597)
T 3oja_B          126 TVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVD---LSLIPS--LF  195 (597)
T ss_dssp             CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECTTSCCSBCC---GGGCTT--CS
T ss_pred             CEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcC---CcCcEEECcCCCCCCcC---hhhhhh--hh
Confidence            88888888888753  2446888888888888888888888888877   88888888888887643   345566  88


Q ss_pred             EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEE
Q 047152          269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH  348 (776)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~  348 (776)
                      .|++++|.+++     +...++|+.|++++|.++.+|..+  .++|++|++++|.+++.  ..+..++      +|++|+
T Consensus       196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~------~L~~L~  260 (597)
T 3oja_B          196 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEVD  260 (597)
T ss_dssp             EEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCT------TCSEEE
T ss_pred             hhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCC------CCCEEE
Confidence            88888887765     344567888888888888765443  35788888888888763  5566666      788888


Q ss_pred             cccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152          349 LSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT  427 (776)
Q Consensus       349 L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  427 (776)
                      |++|.+++..|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|.++
T Consensus       261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~-~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCC
T ss_pred             CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc-ccccCCCCCEEECCCCCCC
Confidence            888888877665 7788888888888888875 4666677888888888888886 4554 4677788888888888876


Q ss_pred             eecCCCCCCCCCCcEEEccCcCCC
Q 047152          428 LEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       428 ~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      +..   +..+++|+.|++++|.+.
T Consensus       338 ~~~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          338 TLK---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCC---CCTTCCCSEEECCSSCEE
T ss_pred             CcC---hhhcCCCCEEEeeCCCCC
Confidence            542   344455556666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=1.1e-32  Score=291.65  Aligned_cols=270  Identities=18%  Similarity=0.284  Sum_probs=173.7

Q ss_pred             CCCCHHHHHHHHHHHhcCC-CCCCCCCCCCCC-CCCCCCCCccceeeCC--------CCCcEEEEECCCCCCCCCCCcee
Q 047152           34 TRCIDEEREALLTFKASLV-DESGILSSWRRE-DEKRDCCKWTGVGCSK--------RTGHVNKLDLQPIGFDSFPLRGK  103 (776)
Q Consensus        34 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~l~g~  103 (776)
                      ..+..+|+.||++||+++. |+.+...+|... ....++|.|.|+.|..        ..++|+.|+|++     +.+. .
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----n~l~-~   95 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----VPLP-Q   95 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----SCCS-S
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----CCch-h
Confidence            3466789999999999984 777777889410 1367899999999942        346788888888     4555 6


Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152          104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS  183 (776)
Q Consensus       104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  183 (776)
                      +|+.++++++|++|+|++|.++  .+|..++.+++|++|+|++|+++ .+|..++++++|++|++++|++.+ ..+..+.
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~~  171 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPLA  171 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSCSE
T ss_pred             cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChhHh
Confidence            7777888888888888888888  47888888888888888888888 778888888888888888877654 3343333


Q ss_pred             ---------cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCC
Q 047152          184 ---------HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNS  254 (776)
Q Consensus       184 ---------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~  254 (776)
                               ++++|++|++++|.++.   +|..++++++|++|++++|.+++ +|..+..+   ++|++|++++|++.+.
T Consensus       172 ~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l---~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          172 STDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSA-LGPAIHHL---PKLEELDLRGCTALRN  244 (328)
T ss_dssp             EEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC---TTCCEEECTTCTTCCB
T ss_pred             hccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCc-CchhhccC---CCCCEEECcCCcchhh
Confidence                     36666666666666554   23445555556666655555554 23334444   5555555555555555


Q ss_pred             chhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCC
Q 047152          255 VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       255 ~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n  322 (776)
                      +|..+..+++  |+.|++++|.+.+.+|..+..+++|++|++++|.+.+ +|..++++++|+.+++..+
T Consensus       245 ~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          245 YPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCCTTCCCC--CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hHHHhcCCCC--CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            5444444444  4455554444444444444444444444444444444 4444444444444444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.7e-32  Score=305.83  Aligned_cols=65  Identities=23%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCCCC
Q 047152          161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCDLP  225 (776)
Q Consensus       161 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~  225 (776)
                      ++|++||+++|++........+..+++|++|++++|.++..  ..++..+..+++|++|++++|.+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~   69 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   69 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence            34566666666654311112245555555555555555432  123344444455555555554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.3e-33  Score=310.61  Aligned_cols=232  Identities=20%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             CcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCCCCCCCchhhhc--CCCCCCccEEEcCCCCCCCCc----hhhH
Q 047152          188 LIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLN--LNSSNSLEVIDLTENNLTNSV----YPWL  259 (776)
Q Consensus       188 L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~~~~L~~L~Ls~n~l~~~~----~~~l  259 (776)
                      |++|++++|.++..  ..++..+.++++|++|++++|.+.+..+..+..  ....++|++|++++|++++..    +..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            44444444444322  123344444555555555555443332222221  001134555555555554422    2333


Q ss_pred             hhcCCCCcCEEEccCCccccCcchhhc-----CCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCccc
Q 047152          260 FNVSSSLVDRISLPSNQLQGSIPEAFG-----RMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQLS  329 (776)
Q Consensus       260 ~~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~  329 (776)
                      ..+++  |++|++++|.+++..+..+.     ..++|++|++++|.+++     ++..+..+++|++|++++|.+++...
T Consensus       167 ~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          167 RAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             hhCCC--CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            33344  55555555554433222222     23455555555555554     34444555555555555555544322


Q ss_pred             hHHh-----hccCCCcCCCccEEEccccccccc----CCC-ccCCCCCCEEeccCccccccchhcccC-----CCCCcEE
Q 047152          330 EFIQ-----DLSSGCTKNSLEWLHLSSNEITGS----MPN-LGEFSSLKQLNLENNLLNGTIHKSIGQ-----LFKLEML  394 (776)
Q Consensus       330 ~~~~-----~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L  394 (776)
                      ..+.     .++      +|++|++++|.+++.    ++. +..+++|++|++++|.+++..+..+..     .++|++|
T Consensus       245 ~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          245 AELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            2111     122      455555555555532    111 444555555555555554433322221     2455666


Q ss_pred             ECCCcccccc----ccHHhhhCCCCCcEEECCCCccce
Q 047152          395 KLNGNSLGGV----ISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       395 ~L~~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      ++++|.+++.    ++. .+..+++|++|++++|.++.
T Consensus       319 ~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             ECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHH
T ss_pred             EcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCcccc
Confidence            6666655443    222 34445556666666555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-29  Score=269.90  Aligned_cols=288  Identities=19%  Similarity=0.221  Sum_probs=191.9

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      ++++++++++.++  .+|..+.  ++|++|++++|++++..|..|+++++|++|++++|.+.. ..+..++++++|++|+
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEE
Confidence            5667777777766  3565543  567777777777775556667777777777777777653 3455667777777777


Q ss_pred             ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC--CchhhHhhcCCCCcCEE
Q 047152          193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN--SVYPWLFNVSSSLVDRI  270 (776)
Q Consensus       193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~~~~~L~~L  270 (776)
                      +++|.++.++   ..+.  ++|++|++++|.+.+..+..+..+   ++|++|++++|.++.  ..+..+..+ +  |+.|
T Consensus       109 L~~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l-~--L~~L  177 (332)
T 2ft3_A          109 ISKNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGL---RNMNCIEMGGNPLENSGFEPGAFDGL-K--LNYL  177 (332)
T ss_dssp             CCSSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSC---SSCCEEECCSCCCBGGGSCTTSSCSC-C--CSCC
T ss_pred             CCCCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCC---ccCCEEECCCCccccCCCCcccccCC-c--cCEE
Confidence            7777766543   2222  677777777777776666666666   777777777777742  444444444 4  7777


Q ss_pred             EccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152          271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL  349 (776)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L  349 (776)
                      ++++|++++ +|..+.  ++|++|++++|.+++++ ..+..+++|++|++++|.+++..+..+..++      +|++|++
T Consensus       178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L  248 (332)
T 2ft3_A          178 RISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP------TLRELHL  248 (332)
T ss_dssp             BCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT------TCCEEEC
T ss_pred             ECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC------CCCEEEC
Confidence            777777775 444333  57777888888877743 6677777888888888887777776777766      7888888


Q ss_pred             ccccccccCCCccCCCCCCEEeccCccccccchhcccC------CCCCcEEECCCccccc-cccHHhhhCCCCCcEEECC
Q 047152          350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQ------LFKLEMLKLNGNSLGG-VISEALFSNLSRLAALDLA  422 (776)
Q Consensus       350 ~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls  422 (776)
                      ++|+++..++.+..+++|++|++++|++++..+..+..      ..+|+.|++++|.+.. .++...|..+++|+.++++
T Consensus       249 ~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             CSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             CCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence            88877744444777778888888888877665555543      3567777777777651 2333357777777777777


Q ss_pred             CCc
Q 047152          423 DNS  425 (776)
Q Consensus       423 ~n~  425 (776)
                      +|+
T Consensus       329 ~n~  331 (332)
T 2ft3_A          329 NYK  331 (332)
T ss_dssp             ---
T ss_pred             ccc
Confidence            664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.2e-29  Score=264.35  Aligned_cols=287  Identities=20%  Similarity=0.205  Sum_probs=151.8

Q ss_pred             EEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCC
Q 047152           85 VNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ  164 (776)
Q Consensus        85 v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  164 (776)
                      ++.+++++     ..+. .+|..+.  +.+++|++++|.+++. .+..++++++|++|++++|++++..|..|+++++|+
T Consensus        33 l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           33 LRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             TTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            34566666     3332 2343332  5677777777777753 445677777777777777777766677777777777


Q ss_pred             EEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC--CCchhhhcCCCCCCcc
Q 047152          165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP--IIPSSLLNLNSSNSLE  242 (776)
Q Consensus       165 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~~~~L~  242 (776)
                      +|++++|++..  .+..+.  ++|++|++++|.+++.+  +..+.++++|++|++++|.+..  ..+..+..+   ++|+
T Consensus       104 ~L~Ls~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~~L~  174 (330)
T 1xku_A          104 RLYLSKNQLKE--LPEKMP--KTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---KKLS  174 (330)
T ss_dssp             EEECCSSCCSB--CCSSCC--TTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---TTCC
T ss_pred             EEECCCCcCCc--cChhhc--ccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChhhccCC---CCcC
Confidence            77777777652  222222  56666666666665532  3445556666666666655532  334444444   5555


Q ss_pred             EEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccC
Q 047152          243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSG  321 (776)
Q Consensus       243 ~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~  321 (776)
                      +|++++|.++. +|.                          .+.  ++|++|++++|.+++ .|..+..+++|++|++++
T Consensus       175 ~L~l~~n~l~~-l~~--------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          175 YIRIADTNITT-IPQ--------------------------GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EEECCSSCCCS-CCS--------------------------SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             EEECCCCcccc-CCc--------------------------ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            55555554442 221                          111  344444444444444 234444444444444444


Q ss_pred             CcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccC------CCCCcEEE
Q 047152          322 KELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQ------LFKLEMLK  395 (776)
Q Consensus       322 n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~  395 (776)
                      |.+++..+..+..++      +|++|++++|+++..+..+..+++|++|++++|++++..+..+..      .+.++.|+
T Consensus       226 n~l~~~~~~~~~~l~------~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          226 NSISAVDNGSLANTP------HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             SCCCEECTTTGGGST------TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             CcCceeChhhccCCC------CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            444444444444444      455555555555533333555555555555555555444433322      24555666


Q ss_pred             CCCccccc-cccHHhhhCCCCCcEEECCCC
Q 047152          396 LNGNSLGG-VISEALFSNLSRLAALDLADN  424 (776)
Q Consensus       396 L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n  424 (776)
                      +++|.+.. .+++..|..+.+++.+++++|
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             eecCcccccccCccccccccceeEEEeccc
Confidence            66665532 122234555566666666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3e-29  Score=266.38  Aligned_cols=287  Identities=21%  Similarity=0.245  Sum_probs=159.1

Q ss_pred             CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCC
Q 047152          290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLK  368 (776)
Q Consensus       290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~  368 (776)
                      +++.++++++.++.+|..+.  +++++|++++|.+++..+..+..++      +|++|++++|++++..|. +..+++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ------HLYALVLVNNKISKIHEKAFSPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC------CCcEEECCCCccCccCHhHhhCcCCCC
Confidence            56777777777766665542  4666666666666655555555555      566666666666655443 55666666


Q ss_pred             EEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce--ecCCCCCCCCCCcEEEcc
Q 047152          369 QLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL--EFSHDWIPPFQLNTISLG  446 (776)
Q Consensus       369 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~  446 (776)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..+. .|.++++|++|++++|.++.  ..+..+...         
T Consensus       106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---------  172 (332)
T 2ft3_A          106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---------  172 (332)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------
T ss_pred             EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCC---------
Confidence            6666666665 3343333  5666666666666543332 45666666666666665542  111111111         


Q ss_pred             CcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEc
Q 047152          447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL  526 (776)
Q Consensus       447 ~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l  526 (776)
                                                                                               +|++|++
T Consensus       173 -------------------------------------------------------------------------~L~~L~l  179 (332)
T 2ft3_A          173 -------------------------------------------------------------------------KLNYLRI  179 (332)
T ss_dssp             -------------------------------------------------------------------------CCSCCBC
T ss_pred             -------------------------------------------------------------------------ccCEEEC
Confidence                                                                                     2223333


Q ss_pred             cCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152          527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY  606 (776)
Q Consensus       527 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~  606 (776)
                      ++|++++.....   .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|             
T Consensus       180 ~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  243 (332)
T 2ft3_A          180 SEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-------------  243 (332)
T ss_dssp             CSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-------------
T ss_pred             cCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-------------
Confidence            333333211111   1345555555555555555555566666666666666665555555554444             


Q ss_pred             ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC------cCCCCeeeCcCceee--ecCCcc
Q 047152          607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ------LKSLDFLDLSRNQFF--GGIPSS  678 (776)
Q Consensus       607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~  678 (776)
                             ++|++++|+++ .+|..++.+++|++|++++|++++..+..+..      ...|+.|++++|.+.  +..|..
T Consensus       244 -------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~  315 (332)
T 2ft3_A          244 -------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT  315 (332)
T ss_dssp             -------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred             -------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence                   45566666666 56666666666666666666666544444443      245677777777765  455666


Q ss_pred             CcCCCCCCeeeCCCCc
Q 047152          679 LSQLSGLSVMDLSYNN  694 (776)
Q Consensus       679 l~~l~~L~~L~ls~N~  694 (776)
                      +..++.|+.+++++|+
T Consensus       316 ~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          316 FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GTTBCCSTTEEC----
T ss_pred             ccccchhhhhhccccc
Confidence            7777777777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-28  Score=261.77  Aligned_cols=288  Identities=20%  Similarity=0.209  Sum_probs=147.9

Q ss_pred             CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCC
Q 047152          290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLK  368 (776)
Q Consensus       290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~  368 (776)
                      +++.++++++.++.+|..+.  +++++|++++|.+++..+..+..++      +|++|++++|.+++..|. +..+++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT------TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCC------CCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            34555555555555544332  3455555555555554444444444      555555555555554343 55555566


Q ss_pred             EEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce--ecCCCCCCCCCCcEEEcc
Q 047152          369 QLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL--EFSHDWIPPFQLNTISLG  446 (776)
Q Consensus       369 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~  446 (776)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..+. .+.++++|++|++++|.+..  ..+..+..+         
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---------  170 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGM---------  170 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---------
T ss_pred             EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhhccCC---------
Confidence            6666665555 3333332  4566666666666543332 45666666666666665532  111111111         


Q ss_pred             CcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEc
Q 047152          447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL  526 (776)
Q Consensus       447 ~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l  526 (776)
                                                ++|++|++++|.+                                         
T Consensus       171 --------------------------~~L~~L~l~~n~l-----------------------------------------  183 (330)
T 1xku_A          171 --------------------------KKLSYIRIADTNI-----------------------------------------  183 (330)
T ss_dssp             --------------------------TTCCEEECCSSCC-----------------------------------------
T ss_pred             --------------------------CCcCEEECCCCcc-----------------------------------------
Confidence                                      1222222222222                                         


Q ss_pred             cCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152          527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY  606 (776)
Q Consensus       527 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~  606 (776)
                           +......   .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|             
T Consensus       184 -----~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------  242 (330)
T 1xku_A          184 -----TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-------------  242 (330)
T ss_dssp             -----CSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-------------
T ss_pred             -----ccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-------------
Confidence                 2111111   1345555555555555555555555666666666666655555455544444             


Q ss_pred             ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC------cCCCCeeeCcCceeee--cCCcc
Q 047152          607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ------LKSLDFLDLSRNQFFG--GIPSS  678 (776)
Q Consensus       607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~--~~p~~  678 (776)
                             ++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|.+..  ..|..
T Consensus       243 -------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~  314 (330)
T 1xku_A          243 -------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST  314 (330)
T ss_dssp             -------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             -------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence                   45566666665 55666666666666666666666544444432      3566677777776643  44566


Q ss_pred             CcCCCCCCeeeCCCCc
Q 047152          679 LSQLSGLSVMDLSYNN  694 (776)
Q Consensus       679 l~~l~~L~~L~ls~N~  694 (776)
                      +..+..++.+++++|+
T Consensus       315 f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          315 FRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GTTCCCGGGEEC----
T ss_pred             cccccceeEEEecccC
Confidence            6667777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.2e-31  Score=305.24  Aligned_cols=442  Identities=15%  Similarity=0.080  Sum_probs=278.2

Q ss_pred             CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCC---CCCCCcccc----------
Q 047152           68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFS---GSSIPEFLG----------  134 (776)
Q Consensus        68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~----------  134 (776)
                      .-|++|.++.+..  .  ..+.+.+      ......+..+.++++|++|+++++...   +. +|..++          
T Consensus        39 ~vck~W~~~~~~~--~--~~l~~~~------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l  107 (592)
T 3ogk_B           39 LVCRRWFKIDSET--R--EHVTMAL------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEI  107 (592)
T ss_dssp             TSCHHHHHHHHHH--C--CEEEESC------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHH
T ss_pred             HHhHHHHHhhhcc--c--cEEEEee------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHH
Confidence            3466899886532  1  2233332      123334456678999999999875321   11 332222          


Q ss_pred             --CCCCCCEEecCCCCCCCCCCccCCCC--CCCCEEeccCCCC-CCCCCchhhccCCCCcEEEccCCCCCCcc--hhhHh
Q 047152          135 --SLGKLSYLGLSSAEFAGPIPHQLGNL--SRLQFLDLSFNNL-FSGENLDWLSHLSSLIYLYLDLNDLSNFS--NWVQL  207 (776)
Q Consensus       135 --~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~  207 (776)
                        .+++|++|+|++|.+++..+..++..  .+|++|++++|.. ..........++++|++|++++|.+++..  .++..
T Consensus       108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence              68899999999998877666666553  3499999988862 11011123357889999999988876531  14455


Q ss_pred             hcCCCCCCEEEccCCCCCCCC----chhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccc---cC
Q 047152          208 LSKLHSLTTLSLYSCDLPPII----PSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ---GS  280 (776)
Q Consensus       208 l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~---~~  280 (776)
                      ...+++|++|++++|.+++..    +..+.++   ++|++|++++|.+.+ ++..+.++++  |++|+++.+...   +.
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~-l~~~~~~~~~--L~~L~l~~~~~~~~~~~  261 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILE-LVGFFKAAAN--LEEFCGGSLNEDIGMPE  261 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC---TTCCEEECSSCBGGG-GHHHHHHCTT--CCEEEECBCCCCTTCTT
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhC---CCCcEEeccCccHHH-HHHHHhhhhH--HHhhcccccccccchHH
Confidence            677888999999888887433    3344556   888888888888775 6677888888  888888754332   23


Q ss_pred             cchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccc-hHHhhccCCCcCCCccEEEcccccccccCC
Q 047152          281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLS-EFIQDLSSGCTKNSLEWLHLSSNEITGSMP  359 (776)
Q Consensus       281 ~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~  359 (776)
                      .+..+..+++|+.|+++++....+|..+..+++|++|++++|.+++... ..+..++      +|++|+++++...+.++
T Consensus       262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~  335 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLE  335 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHH
T ss_pred             HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHH
Confidence            4455677888888888887656678778888888888888888665443 3345555      78888887332222223


Q ss_pred             C-ccCCCCCCEEecc-----------Cccccccc-hhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC----
Q 047152          360 N-LGEFSSLKQLNLE-----------NNLLNGTI-HKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA----  422 (776)
Q Consensus       360 ~-l~~l~~L~~L~Ls-----------~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls----  422 (776)
                      . ...+++|++|+++           .|.+++.. +.....+++|++|+++.|.+++..+......+++|++|+++    
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence            3 3567778888887           35555432 22234577788888877777665554322337777777775    


Q ss_pred             CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEccccc--CcccCCcccccccCCC
Q 047152          423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ--MRGKVPDLSLRFDISG  500 (776)
Q Consensus       423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~--l~g~~p~~~~~~~~~l  500 (776)
                      .|.+++.....                   .++           .+...+++|+.|+++.+.  +++..+.         
T Consensus       416 ~n~l~~~p~~~-------------------~~~-----------~~~~~~~~L~~L~L~~~~~~l~~~~~~---------  456 (592)
T 3ogk_B          416 EERITDLPLDN-------------------GVR-----------SLLIGCKKLRRFAFYLRQGGLTDLGLS---------  456 (592)
T ss_dssp             CSCCSSCCCHH-------------------HHH-----------HHHHHCTTCCEEEEECCGGGCCHHHHH---------
T ss_pred             CccccCchHHH-------------------HHH-----------HHHHhCCCCCEEEEecCCCCccHHHHH---------
Confidence            33443210000                   000           012224566777765322  3322111         


Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCcccc-CCCccccCCCCccEEECcCCccccc-CChhhhCCCCCcEEeccCCc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGK-LPDCWFQFDSLVILNLANNN  578 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~  578 (776)
                                  .+...+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+
T Consensus       457 ------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          457 ------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             ------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             ------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence                        011114567888888887765 2344556788899999999998754 34445678899999999999


Q ss_pred             ccccC
Q 047152          579 FFGKI  583 (776)
Q Consensus       579 l~~~~  583 (776)
                      +++.-
T Consensus       525 it~~~  529 (592)
T 3ogk_B          525 ASMTG  529 (592)
T ss_dssp             CCTTC
T ss_pred             CCHHH
Confidence            87553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4e-30  Score=296.13  Aligned_cols=186  Identities=17%  Similarity=0.084  Sum_probs=103.5

Q ss_pred             CCccccCCCCCCEEecCCCCC---CCCCCccCC------------CCCCCCEEeccCCCCCCCCCchhhcc-C-CCCcEE
Q 047152          129 IPEFLGSLGKLSYLGLSSAEF---AGPIPHQLG------------NLSRLQFLDLSFNNLFSGENLDWLSH-L-SSLIYL  191 (776)
Q Consensus       129 ~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~~~~~~~~~~l~~-l-~~L~~L  191 (776)
                      .+..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+.. ..+..+.. + ++|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-HHHHHHHHhccccCcEE
Confidence            445667788999999987642   134444333            56777777777776543 23334444 2 337777


Q ss_pred             EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC----CchhhhcCCCCCCccEEEcCCCCCCC----CchhhHhhcC
Q 047152          192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI----IPSSLLNLNSSNSLEVIDLTENNLTN----SVYPWLFNVS  263 (776)
Q Consensus       192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~~~  263 (776)
                      ++++|.-.....+.....++++|++|+|++|.+++.    ++.....+   ++|++|++++|.+++    .++..+.+++
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN---TSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC---CCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC---CCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            777665222223334445667777777777766554    22333444   666677777666652    2333344555


Q ss_pred             CCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCC----CCchhhcccCCCcEEeccC
Q 047152          264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR----GIPKFLGNMCGLKILYLSG  321 (776)
Q Consensus       264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~ip~~l~~l~~L~~L~Ls~  321 (776)
                      +  |+.|++++|.+.+ ++..+..+++|++|+++.....    ..+..+..+++|+.+++++
T Consensus       221 ~--L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (592)
T 3ogk_B          221 S--LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY  279 (592)
T ss_dssp             T--CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred             C--CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence            5  6666666666554 4455566666666666542211    1223344445555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.7e-27  Score=248.30  Aligned_cols=253  Identities=25%  Similarity=0.279  Sum_probs=186.1

Q ss_pred             ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccc--ccHHhhhCCCCCcEEEC
Q 047152          344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV--ISEALFSNLSRLAALDL  421 (776)
Q Consensus       344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~L  421 (776)
                      -+.++.+++.++..+..+  .++|++|++++|.++...+..+..+++|++|++++|.++..  .+. .+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEEC
Confidence            345666666666443322  25677777777777744444466777777777777776532  233 3455667777777


Q ss_pred             CCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCC
Q 047152          422 ADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGP  501 (776)
Q Consensus       422 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~  501 (776)
                      ++|.++.. +..+..                                                                 
T Consensus        86 s~n~i~~l-~~~~~~-----------------------------------------------------------------   99 (306)
T 2z66_A           86 SFNGVITM-SSNFLG-----------------------------------------------------------------   99 (306)
T ss_dssp             CSCSEEEE-EEEEET-----------------------------------------------------------------
T ss_pred             CCCccccC-hhhcCC-----------------------------------------------------------------
Confidence            76665421 100110                                                                 


Q ss_pred             eEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                                      +++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       100 ----------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A          100 ----------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             ----------------CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             ----------------CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence                            2345555555555555444 45666788888899888888888888888899999999999887


Q ss_pred             c-cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152          581 G-KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK  659 (776)
Q Consensus       581 ~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  659 (776)
                      + .+|..+..+++|                    ++|++++|++++..|..+..+++|++|+|++|++++..+..+..++
T Consensus       164 ~~~~~~~~~~l~~L--------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          164 ENFLPDIFTELRNL--------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             GGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             cccchhHHhhCcCC--------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            6 567777766666                    7789999999988888999999999999999999987777889999


Q ss_pred             CCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCcceecCCC
Q 047152          660 SLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       660 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~  701 (776)
                      +|++|++++|++.+..|..+..++ +|++|++++|+++|.++.
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            999999999999999999999984 999999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.8e-28  Score=257.79  Aligned_cols=285  Identities=22%  Similarity=0.275  Sum_probs=178.3

Q ss_pred             CCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCC
Q 047152           67 KRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS  146 (776)
Q Consensus        67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~  146 (776)
                      ...+|.|.|+ |+-          ++     ..++ .+|..+.  ++|++|++++|.+++. .+..+.++++|++|++++
T Consensus        26 ~~~~C~~~~~-c~~----------~~-----~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~   85 (353)
T 2z80_A           26 ASLSCDRNGI-CKG----------SS-----GSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTS   85 (353)
T ss_dssp             -CCEECTTSE-EEC----------CS-----TTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred             cCCCCCCCeE-eeC----------CC-----CCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCC
Confidence            4567889887 642          23     2333 3454443  5899999999999864 445789999999999999


Q ss_pred             CCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCC-CC
Q 047152          147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD-LP  225 (776)
Q Consensus       147 n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~  225 (776)
                      |++++..|..|+++++|++|++++|++.. .....++++++|++|++++|.++.++. ...+.++++|++|++++|. +.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           86 NGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCC
T ss_pred             CccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCcccc
Confidence            99998778889999999999999998874 333447778888888888887776421 1245666667777766663 44


Q ss_pred             CCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc
Q 047152          226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP  305 (776)
Q Consensus       226 ~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip  305 (776)
                      +..+..+.++   ++|++|++++|++.+..                          |..+..+++|++|++++|.++.+|
T Consensus       164 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~--------------------------~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          164 KIQRKDFAGL---TFLEELEIDASDLQSYE--------------------------PKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             EECTTTTTTC---CEEEEEEEEETTCCEEC--------------------------TTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             ccCHHHccCC---CCCCEEECCCCCcCccC--------------------------HHHHhccccCCeecCCCCccccch
Confidence            4444455555   55555555555555444                          444445555555555555554443


Q ss_pred             hh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc----CCC-ccCCCCCCEEeccCccccc
Q 047152          306 KF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS----MPN-LGEFSSLKQLNLENNLLNG  379 (776)
Q Consensus       306 ~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~  379 (776)
                      .. +..+++|++|++++|.+++..+..+....   ....++.++++++.+++.    +|. +..+++|++|++++|+++ 
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~---~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGE---TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             hhhhhhcccccEEECCCCcccccccccccccc---ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            32 22345555555555555544333222111   111456666666655541    222 667778888888888887 


Q ss_pred             cchhc-ccCCCCCcEEECCCcccccccc
Q 047152          380 TIHKS-IGQLFKLEMLKLNGNSLGGVIS  406 (776)
Q Consensus       380 ~~~~~-l~~l~~L~~L~L~~N~l~~~~~  406 (776)
                      .+|.. +..+++|++|++++|.+.+..|
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            44444 5778888888888888877655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.7e-27  Score=251.07  Aligned_cols=277  Identities=23%  Similarity=0.227  Sum_probs=201.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      .++.....+++++.++  .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|++.. ..+..++++++|+
T Consensus        29 ~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred             CCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCC
Confidence            3444556788899888  4777665  589999999999987666688899999999999998864 3345577777777


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD  268 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~  268 (776)
                      +|++++|.+++++  +..++++++|++|++++|++.+..+ ..+.                           .+++  |+
T Consensus       104 ~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---------------------------~l~~--L~  152 (353)
T 2z80_A          104 HLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFS---------------------------HLTK--LQ  152 (353)
T ss_dssp             EEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCSCT---------------------------TCTT--CC
T ss_pred             EEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhhhc---------------------------cCCC--Cc
Confidence            7777777776642  2335666666666666666554322 2333                           3344  55


Q ss_pred             EEEccCC-ccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          269 RISLPSN-QLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       269 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      +|++++| .+.+..+..++.+++|++|++++|.+++ .|..+..+++|++|++++|.+.......+..++      +|++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~L~~  226 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS------SVEC  226 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT------TEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc------cccE
Confidence            5555555 2444456678899999999999999999 688999999999999999999766665666676      8999


Q ss_pred             EEcccccccccCCC----ccCCCCCCEEeccCccccc----cchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcE
Q 047152          347 LHLSSNEITGSMPN----LGEFSSLKQLNLENNLLNG----TIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA  418 (776)
Q Consensus       347 L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~  418 (776)
                      |++++|.+++..+.    ....+.++.++++++.+++    .+|..+..+++|++|++++|+++ .+|...|..+++|++
T Consensus       227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence            99999999875543    3346677888888887776    35667777888888888888886 455545677778888


Q ss_pred             EECCCCcccee
Q 047152          419 LDLADNSLTLE  429 (776)
Q Consensus       419 L~Ls~n~l~~~  429 (776)
                      |++++|++.+.
T Consensus       306 L~L~~N~~~~~  316 (353)
T 2z80_A          306 IWLHTNPWDCS  316 (353)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEeeCCCccCc
Confidence            88887777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.6e-28  Score=254.53  Aligned_cols=266  Identities=23%  Similarity=0.251  Sum_probs=165.0

Q ss_pred             ccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152          344 LEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA  422 (776)
Q Consensus       344 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  422 (776)
                      ++..+++.+.+...+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+   +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence            34444444444333222 3344556666666666665555566666666666666666654432   5556666666666


Q ss_pred             CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152          423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG  502 (776)
Q Consensus       423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~  502 (776)
                      +|++++..+                                        .++|++|++++|+++                
T Consensus        89 ~n~l~~l~~----------------------------------------~~~L~~L~l~~n~l~----------------  112 (317)
T 3o53_A           89 NNYVQELLV----------------------------------------GPSIETLHAANNNIS----------------  112 (317)
T ss_dssp             SSEEEEEEE----------------------------------------CTTCCEEECCSSCCS----------------
T ss_pred             CCccccccC----------------------------------------CCCcCEEECCCCccC----------------
Confidence            665553211                                        013444444444433                


Q ss_pred             EeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccc
Q 047152          503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFG  581 (776)
Q Consensus       503 l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~  581 (776)
                               +..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++
T Consensus       113 ---------~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          113 ---------RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             ---------EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ---------CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence                     22222345677777777777777776777777888888888888776666653 67778888888887764


Q ss_pred             cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCC
Q 047152          582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL  661 (776)
Q Consensus       582 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  661 (776)
                      . |. ...+                    ++|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|
T Consensus       184 ~-~~-~~~l--------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          184 V-KG-QVVF--------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             E-EC-CCCC--------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             c-cc-cccc--------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence            4 21 1123                    334677777888774 4445777788888888888877 467777777788


Q ss_pred             CeeeCcCceee-ecCCccCcCCCCCCeeeCC-CCcceecCCC
Q 047152          662 DFLDLSRNQFF-GGIPSSLSQLSGLSVMDLS-YNNLSGKIPL  701 (776)
Q Consensus       662 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~  701 (776)
                      +.|++++|++. +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            88888888777 6677777777777777777 3455555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=8.1e-27  Score=244.70  Aligned_cols=249  Identities=21%  Similarity=0.237  Sum_probs=151.1

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCC-CchhhccCCCCcEEEc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE-NLDWLSHLSSLIYLYL  193 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~L  193 (776)
                      +.++.+++.++  .+|..+.  ++|++|++++|+++...+..|+++++|++|++++|.+...+ .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            57888888887  4676554  68999999999998544445788999999999998875311 1345666778888888


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L  272 (776)
                      ++|.+..+   +..+..+++|++|++++|.+.+..+ ..+..+   ++|++|++++|.+.+..+..+..+++  |++|++
T Consensus        86 s~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l  157 (306)
T 2z66_A           86 SFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSS--LEVLKM  157 (306)
T ss_dssp             CSCSEEEE---EEEEETCTTCCEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCEECSTTTTTTCTT--CCEEEC
T ss_pred             CCCccccC---hhhcCCCCCCCEEECCCCcccccccchhhhhc---cCCCEEECCCCcCCccchhhcccCcC--CCEEEC
Confidence            88777653   3446667777777777776665443 344444   55666666655555444444444444  444444


Q ss_pred             cCCcccc-CcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          273 PSNQLQG-SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       273 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                      ++|.+++ .                       +|..+..+++|++|++++|.+++..+..+..++      +|++|++++
T Consensus       158 ~~n~l~~~~-----------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~  208 (306)
T 2z66_A          158 AGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSH  208 (306)
T ss_dssp             TTCEEGGGE-----------------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTT
T ss_pred             CCCcccccc-----------------------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------CCCEEECCC
Confidence            4444443 2                       344444444444555554444444444444444      455555555


Q ss_pred             ccccccCCC-ccCCCCCCEEeccCccccccchhcccCCC-CCcEEECCCcccccc
Q 047152          352 NEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLF-KLEMLKLNGNSLGGV  404 (776)
Q Consensus       352 n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~  404 (776)
                      |.+++..+. +..+++|++|++++|++++..|..+..++ +|++|++++|.+++.
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            555544332 45556666666666666666666666553 666666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.1e-26  Score=241.99  Aligned_cols=276  Identities=19%  Similarity=0.230  Sum_probs=181.4

Q ss_pred             HhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCcee----ccccc--cCCCCCCEEeCCC
Q 047152           48 KASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGK----ITPAL--LKLQHLTYLDLSR  121 (776)
Q Consensus        48 k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~----~~~~l--~~l~~L~~L~Ls~  121 (776)
                      +.++.++..++..|+.. ...++|.|.++.|....+..     .-     ....|.    ++..+  ...+++++|+|++
T Consensus        22 ~~~~~~~~~aLl~~k~~-~~~~~~~~~~~w~~~~~~~~-----~~-----~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~   90 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRH-YNADRNRWHSAWRQANSNNP-----QI-----ETRTGRALKATADLLEDATQPGRVALELRS   90 (328)
T ss_dssp             -CCCCCHHHHHHHHHHH-HHHCCTTHHHHHHHHTTTCT-----TS-----CCSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHh-ccCCchhhhhhhcccccccc-----cc-----cccCCcchhhhHHHHhcccccceeEEEccC
Confidence            34444555567788631 13578999988873221100     00     112221    11111  3468899999999


Q ss_pred             CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCc
Q 047152          122 NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNF  201 (776)
Q Consensus       122 n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  201 (776)
                      |.++  .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+.  ..+..++++++|++|++++|++.+.
T Consensus        91 n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A           91 VPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE  165 (328)
T ss_dssp             SCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred             CCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc
Confidence            9998  58888999999999999999999 89999999999999999999987  5567788888888888888766552


Q ss_pred             chhhHhhc---------CCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152          202 SNWVQLLS---------KLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       202 ~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L  272 (776)
                        ++..+.         ++++|++|++++|.++ .+|..+..+   ++|++|++++|++++ +|+.+..+++  |++|++
T Consensus       166 --~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l---~~L~~L~L~~N~l~~-l~~~l~~l~~--L~~L~L  236 (328)
T 4fcg_A          166 --LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL---QNLKSLKIRNSPLSA-LGPAIHHLPK--LEELDL  236 (328)
T ss_dssp             --CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC---TTCCEEEEESSCCCC-CCGGGGGCTT--CCEEEC
T ss_pred             --cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC---CCCCEEEccCCCCCc-CchhhccCCC--CCEEEC
Confidence              333333         3666777777666666 455556665   666666666666664 4445556655  666666


Q ss_pred             cCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                      ++|.+.+.+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..++      +|+.+++..
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~------~L~~l~l~~  310 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP------ANCIILVPP  310 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC------TTCEEECCG
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc------CceEEeCCH
Confidence            6666666666666666666666666665555 555566666666666666666666666555555      555555554


Q ss_pred             ccc
Q 047152          352 NEI  354 (776)
Q Consensus       352 n~l  354 (776)
                      +.+
T Consensus       311 ~~~  313 (328)
T 4fcg_A          311 HLQ  313 (328)
T ss_dssp             GGS
T ss_pred             HHH
Confidence            433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.6e-25  Score=248.27  Aligned_cols=161  Identities=21%  Similarity=0.153  Sum_probs=126.2

Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCC-cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN-LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      ++|++|++++|++++..+..+..+++|++|++++| .+....+..|.++++|++|++++|++++. | .+..+++     
T Consensus       147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~-----  219 (452)
T 3zyi_A          147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG-----  219 (452)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT-----
T ss_pred             CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc-----
Confidence            34555555555555555555666778888888874 44433344678888888888888888743 3 2444444     


Q ss_pred             cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152          598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS  677 (776)
Q Consensus       598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  677 (776)
                                     |++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus       220 ---------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          220 ---------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             ---------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ---------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence                           47889999999988899999999999999999999988889999999999999999999988888


Q ss_pred             cCcCCCCCCeeeCCCCcceecCCC
Q 047152          678 SLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       678 ~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      .+..+++|+.|++++|++.|.+..
T Consensus       285 ~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          285 LFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             SSTTCTTCCEEECCSSCEECSTTT
T ss_pred             HhccccCCCEEEccCCCcCCCCCc
Confidence            889999999999999999987653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.9e-26  Score=260.53  Aligned_cols=286  Identities=25%  Similarity=0.255  Sum_probs=191.2

Q ss_pred             CCCCCCCCCCCCCCCCccceeeC------CCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCC
Q 047152           57 ILSSWRREDEKRDCCKWTGVGCS------KRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIP  130 (776)
Q Consensus        57 ~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p  130 (776)
                      ....|.   .+.+||.|+|..|.      .....++.|++++     +.+. .+|..+.  ++|++|++++|.++.  +|
T Consensus        11 ~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp   77 (622)
T 3g06_A           11 VWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--LP   77 (622)
T ss_dssp             HHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC--CC
T ss_pred             HHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC--CC
Confidence            345676   36678999764321      1123478888888     4555 5666554  789999999998883  66


Q ss_pred             ccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcC
Q 047152          131 EFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK  210 (776)
Q Consensus       131 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  210 (776)
                      .   .+++|++|+|++|+++ .+|.   .+++|++|++++|++..  .+.   .+++|++|++++|.++.++.      .
T Consensus        78 ~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~------~  139 (622)
T 3g06_A           78 A---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPV------L  139 (622)
T ss_dssp             C---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCC------C
T ss_pred             C---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCC------C
Confidence            5   5788999999999888 4665   67888999999988864  222   56788888888888887543      2


Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCC
Q 047152          211 LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS  290 (776)
Q Consensus       211 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  290 (776)
                      +++|++|++++|.+++. |.   ..   .+|+.|++++|.+++ +|   ..+++  |+.|++++|++++ +|.   .+++
T Consensus       140 l~~L~~L~Ls~N~l~~l-~~---~~---~~L~~L~L~~N~l~~-l~---~~~~~--L~~L~Ls~N~l~~-l~~---~~~~  202 (622)
T 3g06_A          140 PPGLQELSVSDNQLASL-PA---LP---SELCKLWAYNNQLTS-LP---MLPSG--LQELSVSDNQLAS-LPT---LPSE  202 (622)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CC---TTCCEEECCSSCCSC-CC---CCCTT--CCEEECCSSCCSC-CCC---CCTT
T ss_pred             CCCCCEEECcCCcCCCc-CC---cc---CCCCEEECCCCCCCC-Cc---ccCCC--CcEEECCCCCCCC-CCC---ccch
Confidence            47888888888887763 22   12   667777888777765 33   23344  7777777777765 332   2366


Q ss_pred             CCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEE
Q 047152          291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQL  370 (776)
Q Consensus       291 L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L  370 (776)
                      |+.|++++|.++.+|..   +++|++|++++|.+++..    ..++      +|++|++++|.++.. |.  .+++|+.|
T Consensus       203 L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~------~L~~L~Ls~N~L~~l-p~--~~~~L~~L  266 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPS------ELKELMVSGNRLTSL-PM--LPSGLLSL  266 (622)
T ss_dssp             CCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCT------TCCEEECCSSCCSCC-CC--CCTTCCEE
T ss_pred             hhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCC------cCcEEECCCCCCCcC-Cc--ccccCcEE
Confidence            77777777777776643   356777777777766532    1222      677777777776643 32  45667777


Q ss_pred             eccCccccccchhcccCCCCCcEEECCCccccccccH
Q 047152          371 NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE  407 (776)
Q Consensus       371 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  407 (776)
                      ++++|+++ .+|..+..+++|+.|++++|.+++..+.
T Consensus       267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            77777766 5566666677777777777776665554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=246.47  Aligned_cols=252  Identities=24%  Similarity=0.227  Sum_probs=174.0

Q ss_pred             ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCC
Q 047152          344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD  423 (776)
Q Consensus       344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  423 (776)
                      .+.++.++..++..+..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..+. .|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCC
Confidence            4455555555553333232  4566666666666665556666666666666666666544333 566666666666666


Q ss_pred             CccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeE
Q 047152          424 NSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGI  503 (776)
Q Consensus       424 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l  503 (776)
                      |+++...+..+..                                                                   
T Consensus       122 n~l~~~~~~~~~~-------------------------------------------------------------------  134 (440)
T 3zyj_A          122 NRLTTIPNGAFVY-------------------------------------------------------------------  134 (440)
T ss_dssp             SCCSSCCTTTSCS-------------------------------------------------------------------
T ss_pred             CcCCeeCHhHhhc-------------------------------------------------------------------
Confidence            6555322222211                                                                   


Q ss_pred             eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCc-ccccCChhhhCCCCCcEEeccCCccccc
Q 047152          504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL-LSGKLPDCWFQFDSLVILNLANNNFFGK  582 (776)
Q Consensus       504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  582 (776)
                                    +++|++|++++|++++..+..+..+++|++|++++|+ +....+..|.++++|++|++++|+++ .
T Consensus       135 --------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          135 --------------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             --------------CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             --------------cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence                          2344455555555554445556667778888888744 44333446778888888888888887 3


Q ss_pred             CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCC
Q 047152          583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD  662 (776)
Q Consensus       583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  662 (776)
                      +|. +..+++                    |++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus       200 ~~~-~~~l~~--------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          200 IPN-LTPLIK--------------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             CCC-CTTCSS--------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             ccc-cCCCcc--------------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            442 444444                    47889999999988889999999999999999999988888899999999


Q ss_pred             eeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       663 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      +|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            999999999988888889999999999999999887653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.2e-26  Score=236.56  Aligned_cols=165  Identities=19%  Similarity=0.115  Sum_probs=105.8

Q ss_pred             ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEE
Q 047152          537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKIL  616 (776)
Q Consensus       537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L  616 (776)
                      ..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..++.+++|                    ++|
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L  158 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------------THL  158 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------CEE
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------------cEE
Confidence            334445666666666666666556666666667777777776665555555555555                    556


Q ss_pred             EccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcce
Q 047152          617 DLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS  696 (776)
Q Consensus       617 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  696 (776)
                      ++++|++++..+..+..+++|++|++++|++++..|..++.+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            66777776555556777777777777777777666777777777777777777777665566777777777777777777


Q ss_pred             ecCCCCCcccccccccccCCCCCCC
Q 047152          697 GKIPLGTQLQSFNELVYAGNPELCG  721 (776)
Q Consensus       697 g~iP~~~~~~~~~~~~~~gN~~lc~  721 (776)
                      |.++....+..+.......+...|.
T Consensus       239 c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          239 CDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             CSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             CCCCcHHHHHHHHhcccccCccccC
Confidence            7665433333333333444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=6.3e-26  Score=235.24  Aligned_cols=223  Identities=23%  Similarity=0.205  Sum_probs=145.4

Q ss_pred             EEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCE
Q 047152           86 NKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF  165 (776)
Q Consensus        86 ~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  165 (776)
                      +.++.++     .++. .+|..+  .++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..|+++++|++
T Consensus        14 ~~~~c~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   84 (285)
T 1ozn_A           14 VTTSCPQ-----QGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ   84 (285)
T ss_dssp             CEEECCS-----SCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             eEEEcCc-----CCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence            4567766     3443 234333  46889999999988864 5567888899999999999888777888888899999


Q ss_pred             EeccCCC-CCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEE
Q 047152          166 LDLSFNN-LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVI  244 (776)
Q Consensus       166 L~Ls~n~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L  244 (776)
                      |++++|. +.. ..+..+.++++|++|++++|.+++..  +..+.++++|++|++++|.+.+..+..+..+   ++|++|
T Consensus        85 L~l~~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L  158 (285)
T 1ozn_A           85 LDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHL  158 (285)
T ss_dssp             EECCSCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEE
T ss_pred             EeCCCCCCccc-cCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccC---CCccEE
Confidence            9998887 543 44566777777777777777777642  3556667777777777777766655556555   666666


Q ss_pred             EcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCc
Q 047152          245 DLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKE  323 (776)
Q Consensus       245 ~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~  323 (776)
                      ++++|++++..+..+..+++  |+.|++++|.+++..|..+..+++|++|++++|.++++| ..+..+++|++|++++|.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTT--CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccCHHHhcCccc--cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            66666665443334555555  555555555555555555555555555555555555533 234555555555555555


Q ss_pred             CC
Q 047152          324 LK  325 (776)
Q Consensus       324 l~  325 (776)
                      +.
T Consensus       237 ~~  238 (285)
T 1ozn_A          237 WV  238 (285)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.1e-28  Score=252.72  Aligned_cols=270  Identities=24%  Similarity=0.252  Sum_probs=147.2

Q ss_pred             CCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCcccc---
Q 047152           58 LSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLG---  134 (776)
Q Consensus        58 ~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~---  134 (776)
                      ..+|.   ....|+.+..+.......+++.+++++     +.+  .+|..+...  |++|+|++|.+....+|..+.   
T Consensus        21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~-----n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~   88 (312)
T 1wwl_A           21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRV-----DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGA   88 (312)
T ss_dssp             SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHC-----CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHH
T ss_pred             ccchH---HHhhhhccccEEEEccCCCceeEeecc-----ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHH
Confidence            34565   234555555443322223455555555     344  455544443  677777777764334565554   


Q ss_pred             ----CCCCCCEEecCCCCCCCCCCccC--CCCCCCCEEeccCCCCCCCCCchhhccC-----CCCcEEEccCCCCCCcch
Q 047152          135 ----SLGKLSYLGLSSAEFAGPIPHQL--GNLSRLQFLDLSFNNLFSGENLDWLSHL-----SSLIYLYLDLNDLSNFSN  203 (776)
Q Consensus       135 ----~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~  203 (776)
                          ++++|++|++++|++++.+|..+  +.+++|++|++++|++.+.  +..++.+     ++|++|++++|++.+.+ 
T Consensus        89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-  165 (312)
T 1wwl_A           89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFS-  165 (312)
T ss_dssp             HHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCC-
T ss_pred             HHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccch-
Confidence                57777777777777777777665  6777777777777776542  4445444     56666666666665532 


Q ss_pred             hhHhhcCCCCCCEEEccCCCCCCCC--chhh--hcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcccc
Q 047152          204 WVQLLSKLHSLTTLSLYSCDLPPII--PSSL--LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG  279 (776)
Q Consensus       204 ~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~  279 (776)
                       +..++++++|++|++++|++.+..  +..+  ..+   ++|++|++++|++++. +                      .
T Consensus       166 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~L~~N~l~~~-~----------------------~  218 (312)
T 1wwl_A          166 -CEQVRVFPALSTLDLSDNPELGERGLISALCPLKF---PTLQVLALRNAGMETP-S----------------------G  218 (312)
T ss_dssp             -TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC---TTCCEEECTTSCCCCH-H----------------------H
T ss_pred             -HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC---CCCCEEECCCCcCcch-H----------------------H
Confidence             244555555666666555554431  2222  333   5555555555555421 0                      1


Q ss_pred             CcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc
Q 047152          280 SIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS  357 (776)
Q Consensus       280 ~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~  357 (776)
                      .....+..+++|++|++++|.+++.+  ..+..+++|++|++++|.++ .+|..+.  +      +|++|++++|++++.
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~------~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A------KLSVLDLSYNRLDRN  289 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S------EEEEEECCSSCCCSC
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C------CceEEECCCCCCCCC
Confidence            11122334455555555555555522  23344555555555555555 3333222  2      567777777777655


Q ss_pred             CCCccCCCCCCEEeccCccccc
Q 047152          358 MPNLGEFSSLKQLNLENNLLNG  379 (776)
Q Consensus       358 ~~~l~~l~~L~~L~Ls~n~l~~  379 (776)
                       |.+..+++|++|++++|++++
T Consensus       290 -p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CCTTTSCEEEEEECTTCTTTC
T ss_pred             -hhHhhCCCCCEEeccCCCCCC
Confidence             446677777777777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.9e-25  Score=245.09  Aligned_cols=246  Identities=24%  Similarity=0.272  Sum_probs=150.3

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL  193 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L  193 (776)
                      .+.++.++..++  .+|..+.  +++++|+|++|++++..|..|+++++|++|+|++|.+.. ..+..|.++++|++|+|
T Consensus        56 ~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEEC
Confidence            567777777776  4666554  678888888888887777778888888888888887764 34455666667777777


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEcc
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP  273 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~  273 (776)
                      ++|+++.++  +..+..+++|++|++++|.+....+..+.++   ++|++|++++|+..                     
T Consensus       131 ~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~~~~l---------------------  184 (452)
T 3zyi_A          131 FDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAFNRV---PSLMRLDLGELKKL---------------------  184 (452)
T ss_dssp             CSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEECTTTTTTC---TTCCEEECCCCTTC---------------------
T ss_pred             CCCcCCccC--hhhhcccCCCCEEECCCCCcceeCHhHHhcC---CcccEEeCCCCCCc---------------------
Confidence            666666542  2345566666666666666655444455544   55555555543221                     


Q ss_pred             CCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152          274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE  353 (776)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~  353 (776)
                          ....+..|..+++|++|++++|+++++|. +..+++|++|++++|.+++..+..+..++      +|++|++++|+
T Consensus       185 ----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~n~  253 (452)
T 3zyi_A          185 ----EYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS------SLKKLWVMNSQ  253 (452)
T ss_dssp             ----CEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCT------TCCEEECTTSC
T ss_pred             ----cccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCcc------CCCEEEeCCCc
Confidence                11222346677777777777777777653 55666666666666666666565555555      55555555555


Q ss_pred             ccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccc
Q 047152          354 ITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL  401 (776)
Q Consensus       354 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l  401 (776)
                      +++..+. +..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            5544443 44555555555555555544444444455555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.8e-27  Score=246.84  Aligned_cols=254  Identities=22%  Similarity=0.191  Sum_probs=176.0

Q ss_pred             cCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccc-ccccHHhhh-------CCCCCcEEECCCCccceecCCC
Q 047152          362 GEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG-GVISEALFS-------NLSRLAALDLADNSLTLEFSHD  433 (776)
Q Consensus       362 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~  433 (776)
                      +..++|+.|++++|.+  .+|..+...  |+.|++++|.+. +.++. .+.       ++++|++|++++|++++..+..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            3455677777777777  555555443  777777777773 34444 232       5777888888888777666655


Q ss_pred             C--CCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccc
Q 047152          434 W--IPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE  511 (776)
Q Consensus       434 ~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~  511 (776)
                      +  ..+++|++|++++|++++. |..+.....                                                
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------------------------------  145 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------------------------------  145 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------------------------------
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------------------------------
Confidence            4  4555555555555554433 322221100                                                


Q ss_pred             ccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccccc--CChhh--hCCCCCcEEeccCCccccc--CC-
Q 047152          512 GPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGK--LPDCW--FQFDSLVILNLANNNFFGK--IP-  584 (776)
Q Consensus       512 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-  584 (776)
                          ..+++|++|++++|++++..+..+..+++|++|++++|++.+.  .|..+  ..+++|++|++++|++++.  ++ 
T Consensus       146 ----~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          146 ----WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             ----TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             ----hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence                0125677777777777777777777888888888888887765  33344  7788888888888888631  11 


Q ss_pred             ccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCc-hhhhccccCCEEECcCCcccCcCcccccCcCCCCe
Q 047152          585 NSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVP-KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF  663 (776)
Q Consensus       585 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  663 (776)
                      ..+..                    +++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++
T Consensus       222 ~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~  278 (312)
T 1wwl_A          222 ALAAA--------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV  278 (312)
T ss_dssp             HHHHT--------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred             HHHhc--------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence            11223                    3445888999999998775 45667899999999999998 7888877  89999


Q ss_pred             eeCcCceeeecCCccCcCCCCCCeeeCCCCcceec
Q 047152          664 LDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGK  698 (776)
Q Consensus       664 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  698 (776)
                      ||+++|++++. |. +..+++|++|++++|++++.
T Consensus       279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            99999999866 66 88999999999999999763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.7e-25  Score=248.34  Aligned_cols=262  Identities=26%  Similarity=0.262  Sum_probs=164.6

Q ss_pred             CccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152          343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA  422 (776)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  422 (776)
                      +++.|++++|.++..++.+.  ++|++|++++|.++ .+|.   .+++|++|++++|++++ +|.    .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEECc
Confidence            45666666666653322232  56666666666665 3333   34566666666666643 332    44566666666


Q ss_pred             CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152          423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG  502 (776)
Q Consensus       423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~  502 (776)
                      +|++++...    .+.+|+.|++++|++++ +|..              .++|++|                        
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~--------------l~~L~~L------------------------  146 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL--------------PPGLQEL------------------------  146 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC--------------CTTCCEE------------------------
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC--------------CCCCCEE------------------------
Confidence            665553211    22333444444433321 1110              1233333                        


Q ss_pred             EeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccccc
Q 047152          503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK  582 (776)
Q Consensus       503 l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  582 (776)
                       ++++|++++ +|..+.+|+.|++++|++++..    ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++ .
T Consensus       147 -~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~  215 (622)
T 3g06_A          147 -SVSDNQLAS-LPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S  215 (622)
T ss_dssp             -ECCSSCCSC-CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-S
T ss_pred             -ECcCCcCCC-cCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-c
Confidence             444443332 3334567777888888777643    345778888888888774 4432   467778888887776 3


Q ss_pred             CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCC
Q 047152          583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD  662 (776)
Q Consensus       583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  662 (776)
                      +|.                       .+++|+.|++++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+
T Consensus       216 l~~-----------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~  264 (622)
T 3g06_A          216 LPA-----------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLL  264 (622)
T ss_dssp             CCC-----------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred             cCC-----------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCc
Confidence            343                       22445888999999985 66   45688999999999998 5666   678899


Q ss_pred             eeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       663 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      .|+|++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9999999998 7788899999999999999999987774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-27  Score=248.67  Aligned_cols=248  Identities=22%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             CCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCC
Q 047152           99 PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGEN  178 (776)
Q Consensus        99 ~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  178 (776)
                      .+...+...+..+++|++|+|++|.+++. .|..+..+++|++|+|++|++++..|  +..+++|++|++++|.+     
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l-----   92 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----   92 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE-----
T ss_pred             chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc-----
Confidence            33333333344455666666666666543 44555666666666666666554332  55555555555555554     


Q ss_pred             chhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhh
Q 047152          179 LDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW  258 (776)
Q Consensus       179 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~  258 (776)
                                          ++++       ..++|++|++++|.+++..+..   +   ++|++|++++|++++..+..
T Consensus        93 --------------------~~l~-------~~~~L~~L~l~~n~l~~~~~~~---~---~~L~~L~l~~N~l~~~~~~~  139 (317)
T 3o53_A           93 --------------------QELL-------VGPSIETLHAANNNISRVSCSR---G---QGKKNIYLANNKITMLRDLD  139 (317)
T ss_dssp             --------------------EEEE-------ECTTCCEEECCSSCCSEEEECC---C---SSCEEEECCSSCCCSGGGBC
T ss_pred             --------------------cccc-------CCCCcCEEECCCCccCCcCccc---c---CCCCEEECCCCCCCCccchh
Confidence                                3211       1244555555555444433221   2   45556666666555544444


Q ss_pred             HhhcCCCCcCEEEccCCccccCcchhh-cCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccC
Q 047152          259 LFNVSSSLVDRISLPSNQLQGSIPEAF-GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS  337 (776)
Q Consensus       259 l~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  337 (776)
                      +..+++  |++|++++|.+++..+..+ ..+++|++|++++|.++++|.. ..+++|++|++++|.+++..+. +..++ 
T Consensus       140 ~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~-  214 (317)
T 3o53_A          140 EGCRSR--VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA-  214 (317)
T ss_dssp             TGGGSS--EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT-
T ss_pred             hhccCC--CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC-
Confidence            444555  5555555555555444444 3456666666666666554322 2244455555555554433222 33333 


Q ss_pred             CCcCCCccEEEcccccccccCCCccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECC
Q 047152          338 GCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLN  397 (776)
Q Consensus       338 ~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~  397 (776)
                           +|++|++++|++++..+.+..+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus       215 -----~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          215 -----GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             -----TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             -----cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence                 444444444444433222444444444444444444 3334444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.5e-26  Score=254.83  Aligned_cols=237  Identities=24%  Similarity=0.251  Sum_probs=129.9

Q ss_pred             CCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcE
Q 047152          363 EFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNT  442 (776)
Q Consensus       363 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  442 (776)
                      .+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|   +..+++|++|++++|.+++..+.          
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----------   98 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----------   98 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----------
Confidence            34466677777776666666666667777777777776665443   56666666666666666532210          


Q ss_pred             EEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCc
Q 047152          443 ISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT  522 (776)
Q Consensus       443 L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~  522 (776)
                                                    ++|++|++++|.++                         +..+..+++|+
T Consensus        99 ------------------------------~~L~~L~L~~N~l~-------------------------~~~~~~l~~L~  123 (487)
T 3oja_A           99 ------------------------------PSIETLHAANNNIS-------------------------RVSCSRGQGKK  123 (487)
T ss_dssp             ------------------------------TTCCEEECCSSCCC-------------------------CEEECCCSSCE
T ss_pred             ------------------------------CCcCEEECcCCcCC-------------------------CCCccccCCCC
Confidence                                          12333333333333                         22222234566


Q ss_pred             EEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152          523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR  601 (776)
Q Consensus       523 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~  601 (776)
                      .|++++|.+++..|..+..+++|++|+|++|.+++..|..+. .+++|+.|+|++|.+++..+  ...++          
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~----------  191 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFA----------  191 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCT----------
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCC----------
Confidence            666666666666565566666666666666666665555554 56666666666666654321  11122          


Q ss_pred             cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceee-ecCCccCc
Q 047152          602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFF-GGIPSSLS  680 (776)
Q Consensus       602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~  680 (776)
                                .|+.|+|++|.+++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+.
T Consensus       192 ----------~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          192 ----------KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             ----------TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ----------CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence                      22455555555554 33335555555555555555553 4555555555555555555555 44445555


Q ss_pred             CCCCCCeeeCC
Q 047152          681 QLSGLSVMDLS  691 (776)
Q Consensus       681 ~l~~L~~L~ls  691 (776)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            55555544443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=7.8e-28  Score=277.14  Aligned_cols=213  Identities=13%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCC--CCCc------------cc
Q 047152           68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGS--SIPE------------FL  133 (776)
Q Consensus        68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~--~~p~------------~~  133 (776)
                      .-|++|.++...    ..+.+++..+    ..  ......+.++++|++|+++++.....  ..|.            ..
T Consensus        32 ~vck~W~~~~~~----~~~~l~~~~~----~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~  101 (594)
T 2p1m_B           32 LVCKSWYEIERW----CRRKVFIGNC----YA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS  101 (594)
T ss_dssp             TSCHHHHHHHHH----HCCEEEESST----TS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH
T ss_pred             HHHHHHHHhhhh----hceEEeeccc----cc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH
Confidence            346689888321    2345666552    11  11223467788899999988752210  0111            12


Q ss_pred             cCCCCCCEEecCCCCCCCCCCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCC
Q 047152          134 GSLGKLSYLGLSSAEFAGPIPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH  212 (776)
Q Consensus       134 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~  212 (776)
                      ..+++|++|+|++|.+++..+..+. .+++|++|++++|.                        .++. ..++..+.+++
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------------------------~~~~-~~l~~~~~~~~  156 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------------------------GFST-DGLAAIAATCR  156 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------------------------EEEH-HHHHHHHHHCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------------------------CCCH-HHHHHHHHhCC
Confidence            2345555555555555544443333 34555555555542                        1211 11223333455


Q ss_pred             CCCEEEccCCCCCCCCchhhhcCC-CCCCccEEEcCCCC--CCCC-chhhHhhcCCCCcCEEEccCCccccCcchhhcCC
Q 047152          213 SLTTLSLYSCDLPPIIPSSLLNLN-SSNSLEVIDLTENN--LTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRM  288 (776)
Q Consensus       213 ~L~~L~L~~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~--l~~~-~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  288 (776)
                      +|++|++++|.+++..+..+..+. .+++|++|++++|.  +... +......+++  |++|++++|...+.++..+..+
T Consensus       157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~--L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN--LKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT--CCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC--CcEEecCCCCcHHHHHHHHhcC
Confidence            555555555554444333333221 22455555555554  1111 1111223344  5555555552222245555555


Q ss_pred             CCCCEEEccCCC-------CCCCchhhcccCCCcEE
Q 047152          289 VSLRYLDLSSNE-------LRGIPKFLGNMCGLKIL  317 (776)
Q Consensus       289 ~~L~~L~L~~n~-------l~~ip~~l~~l~~L~~L  317 (776)
                      ++|++|+++.+.       +.+++..+.++++|+.+
T Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L  270 (594)
T 2p1m_B          235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL  270 (594)
T ss_dssp             TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence            666666544432       12233344555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=240.77  Aligned_cols=249  Identities=24%  Similarity=0.272  Sum_probs=151.1

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      ..+.++.++..++  .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.+.. ..+..|.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence            4678888888887  4777665  688999999999987777888888888888888888764 3445666677777777


Q ss_pred             ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152          193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L  272 (776)
                      |++|+++.++  +..+..+++|++|++++|.+....+..+..+   ++|++|++++|+.                     
T Consensus       119 L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~l~~~~~---------------------  172 (440)
T 3zyj_A          119 LFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGELKR---------------------  172 (440)
T ss_dssp             CCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTC---TTCCEEECCCCTT---------------------
T ss_pred             CCCCcCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhC---cccCEeCCCCCCC---------------------
Confidence            7776666542  2345555555555555555554444444444   4444444444322                     


Q ss_pred             cCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccc
Q 047152          273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN  352 (776)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n  352 (776)
                          +....+..|.++++|++|++++|.++.+|. +..+++|++|++++|.+++..+..                     
T Consensus       173 ----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~---------------------  226 (440)
T 3zyj_A          173 ----LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGS---------------------  226 (440)
T ss_dssp             ----CCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTT---------------------
T ss_pred             ----cceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhh---------------------
Confidence                122223356667777777777777776653 444555555555555544444444                     


Q ss_pred             cccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152          353 EITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT  427 (776)
Q Consensus       353 ~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  427 (776)
                              +..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+. .|..+++|+.|++++|++.
T Consensus       227 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          227 --------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             --------TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCTTCCEEECCSSCEE
T ss_pred             --------hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-HhccccCCCEEEcCCCCcc
Confidence                    44445555555555555555555555555666666666655533332 4555666666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.6e-27  Score=272.82  Aligned_cols=404  Identities=12%  Similarity=0.053  Sum_probs=199.7

Q ss_pred             cCCCCCCEEEccCCCCCCCCchhhh-cCCCCCCccEEEcCCC-CCCCC-chhhHhhcCCCCcCEEEccCCccccCcchhh
Q 047152          209 SKLHSLTTLSLYSCDLPPIIPSSLL-NLNSSNSLEVIDLTEN-NLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAF  285 (776)
Q Consensus       209 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~~L~~L~Ls~n-~l~~~-~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l  285 (776)
                      ..+++|++|++++|.+++..+..+. .+   ++|++|++++| .++.. ++....++++  |++|++++|.+++..+..+
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~L~~~~~~~~~~l~~~~~~~~~--L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSSCEGFSTDGLAAIAATCRN--LKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHC---TTCCEEEEESCEEEEHHHHHHHHHHCTT--CCEEECTTCEEECCCGGGG
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhC---CCCcEEeCCCcCCCCHHHHHHHHHhCCC--CCEEeCcCCccCCcchHHH
Confidence            4455666666666655544444443 34   56666666665 33322 2233335555  6666666666655443333


Q ss_pred             ----cCCCCCCEEEccCCC--CCC--CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccc-----
Q 047152          286 ----GRMVSLRYLDLSSNE--LRG--IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN-----  352 (776)
Q Consensus       286 ----~~l~~L~~L~L~~n~--l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n-----  352 (776)
                          ..+++|++|++++|.  ++.  ++..+..+++|++|++++|...+.++..+..++      +|++|+++.+     
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~  250 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVR  250 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCC
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccc
Confidence                256677777777775  221  223334567777777777733333566666666      7777774433     


Q ss_pred             --cccccCCCccCCCCCCEE-eccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcccee
Q 047152          353 --EITGSMPNLGEFSSLKQL-NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE  429 (776)
Q Consensus       353 --~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  429 (776)
                        .+.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +...
T Consensus       251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~  328 (594)
T 2p1m_B          251 PDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA  328 (594)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred             hhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence              333333345666777776 3333222 2344444456677777777777654433333556677777777665 3211


Q ss_pred             cCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCc
Q 047152          430 FSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNH  509 (776)
Q Consensus       430 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~  509 (776)
                      ...                                  .+...+++|+.|++..+.-.|.                ...+.
T Consensus       329 ~l~----------------------------------~l~~~~~~L~~L~L~~~~~~g~----------------~~~~~  358 (594)
T 2p1m_B          329 GLE----------------------------------VLASTCKDLRELRVFPSEPFVM----------------EPNVA  358 (594)
T ss_dssp             HHH----------------------------------HHHHHCTTCCEEEEECSCTTCS----------------SCSSC
T ss_pred             HHH----------------------------------HHHHhCCCCCEEEEecCccccc----------------ccCCC
Confidence            000                                  0111223444554432210000                00000


Q ss_pred             cccc----CCCCCCCCcEEEccCCccccCCCcccc-CCCCccEEECc--C----Ccccc-----cCChhhhCCCCCcEEe
Q 047152          510 FEGP----IPPLPSNATSLNLSKNKFSGSISFLCS-LSNRLIYLDLS--N----NLLSG-----KLPDCWFQFDSLVILN  573 (776)
Q Consensus       510 l~g~----~p~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~-----~~p~~~~~l~~L~~L~  573 (776)
                      +++.    +...+++|++|++..|.+++.....+. .+++|+.|+++  +    |.+++     .++..+..+++|+.|+
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            0000    000023344444444443332222221 24444444444  2    23321     1111133444444444


Q ss_pred             ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhh-hccccCCEEECcCCcccCcCc
Q 047152          574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI-MDLVGLVALNLSRNNLTGQIT  652 (776)
Q Consensus       574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p  652 (776)
                      +++ .+++..+..+..                   .+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+
T Consensus       439 L~~-~l~~~~~~~l~~-------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          439 LSG-LLTDKVFEYIGT-------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             CCS-SCCHHHHHHHHH-------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             ecC-cccHHHHHHHHH-------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence            443 333222222211                   24455777788887766555554 567788888888888764433


Q ss_pred             c-cccCcCCCCeeeCcCceeeecCCccC-cCCCCCCeeeCCCCcc
Q 047152          653 P-KIGQLKSLDFLDLSRNQFFGGIPSSL-SQLSGLSVMDLSYNNL  695 (776)
Q Consensus       653 ~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l  695 (776)
                      . .+..+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            3 33457788888888887754433333 3456665555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-25  Score=247.11  Aligned_cols=234  Identities=23%  Similarity=0.196  Sum_probs=135.8

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      +|++|+|++|.+++. .|..|+.+++|++|+|++|.+++..|  ++.+++|++|+|++|.+                   
T Consensus        35 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-------------------   92 (487)
T 3oja_A           35 NVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-------------------   92 (487)
T ss_dssp             GCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-------------------
T ss_pred             CccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-------------------
Confidence            555555555555543 44455555555555555555554333  55555555555555544                   


Q ss_pred             ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152          193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL  272 (776)
Q Consensus       193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L  272 (776)
                            ++++       ..++|++|++++|.+++..+..   +   ++|+.|++++|.+++..|..+..+++  |+.|++
T Consensus        93 ------~~l~-------~~~~L~~L~L~~N~l~~~~~~~---l---~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L  151 (487)
T 3oja_A           93 ------QELL-------VGPSIETLHAANNNISRVSCSR---G---QGKKNIYLANNKITMLRDLDEGCRSR--VQYLDL  151 (487)
T ss_dssp             ------EEEE-------ECTTCCEEECCSSCCCCEEECC---C---SSCEEEECCSSCCCSGGGBCGGGGSS--EEEEEC
T ss_pred             ------CCCC-------CCCCcCEEECcCCcCCCCCccc---c---CCCCEEECCCCCCCCCCchhhcCCCC--CCEEEC
Confidence                  3321       1245555555555555543322   2   55666666666666655656666666  666666


Q ss_pred             cCCccccCcchhhc-CCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152          273 PSNQLQGSIPEAFG-RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS  351 (776)
Q Consensus       273 ~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~  351 (776)
                      ++|.+++..|..+. .+++|++|+|++|.++++|.. ..+++|++|++++|.+++.++. +..++      +|+.|++++
T Consensus       152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~l~------~L~~L~Ls~  223 (487)
T 3oja_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA------GVTWISLRN  223 (487)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT------TCSEEECTT
T ss_pred             CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHh-HcCCC------CccEEEecC
Confidence            66666666666654 567777777777777765432 2466666666666666654443 55555      666666666


Q ss_pred             ccccccCCCccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECC
Q 047152          352 NEITGSMPNLGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLN  397 (776)
Q Consensus       352 n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~  397 (776)
                      |.+++.++.+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       224 N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            666654444666666666666666666 4555556666655555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.4e-23  Score=215.62  Aligned_cols=217  Identities=25%  Similarity=0.308  Sum_probs=137.0

Q ss_pred             CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 047152           68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA  147 (776)
Q Consensus        68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n  147 (776)
                      .++|.|.|+.|.- .+.++.+++++     ..+. .+|..+.  +++++|++++|.+++. .+..|.++++|++|++++|
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~-----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n   71 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSS-----KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDN   71 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTT-----SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccC-----CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCC
Confidence            4789999999853 23456778877     4444 2444443  5678888888888754 4456777888888888888


Q ss_pred             CCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC
Q 047152          148 EFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI  227 (776)
Q Consensus       148 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  227 (776)
                      +++...+..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++..+  +..++.+++|++|++++|.+++.
T Consensus        72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           72 KLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             CCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcCCcc
Confidence            8775444556777777777777777754 33344555666666666666555532  23344455555555555544444


Q ss_pred             CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch-
Q 047152          228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-  306 (776)
Q Consensus       228 ~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~-  306 (776)
                      .+.                           .+..+++  |+.|++++|++++..+..|..+++|++|++++|.++++|. 
T Consensus       149 ~~~---------------------------~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          149 PKG---------------------------VFDKLTS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CTT---------------------------TTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CHh---------------------------HccCCcc--cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            333                           3444444  5555555555555555566677777777777777777554 


Q ss_pred             hhcccCCCcEEeccCCcCCC
Q 047152          307 FLGNMCGLKILYLSGKELKG  326 (776)
Q Consensus       307 ~l~~l~~L~~L~Ls~n~l~~  326 (776)
                      .+..+++|++|++++|.+..
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhccccCCCEEEecCCCeeC
Confidence            46667777777777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5e-23  Score=211.40  Aligned_cols=200  Identities=22%  Similarity=0.191  Sum_probs=132.4

Q ss_pred             eEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccc
Q 047152          502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG  581 (776)
Q Consensus       502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  581 (776)
                      .++++++.++......+.++++|++++|++++..+..+..+++|++|++++|.++...+..|.++++|++|++++|++++
T Consensus        20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred             EEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence            44444444443222224566777777777766666666667777777777777765444555667777777777777765


Q ss_pred             cCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC
Q 047152          582 KIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ  657 (776)
Q Consensus       582 ~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  657 (776)
                      ..+..+..+++|++|+++++.+...    +..+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..+..
T Consensus       100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  179 (270)
T 2o6q_A          100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK  179 (270)
T ss_dssp             CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence            5555566666665555555433322    234555677788888887665666777888888888888887665666777


Q ss_pred             cCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          658 LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       658 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      +++|++|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            88888888888888766666677778888888888888776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4.8e-23  Score=212.37  Aligned_cols=162  Identities=23%  Similarity=0.100  Sum_probs=117.9

Q ss_pred             CcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccccc-CCccccccCCCcEEecC
Q 047152          521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK-IPNSMGFLHNIRSLSLY  599 (776)
Q Consensus       521 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~  599 (776)
                      |++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..+++|      
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------  151 (276)
T 2z62_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------  151 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------
T ss_pred             CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------
Confidence            33444444444444444455566777777777777765555677777777777777777653 46666666665      


Q ss_pred             CCcccccccccccccEEEccCCCCccCCchhhhccccCC----EEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC
Q 047152          600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV----ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI  675 (776)
Q Consensus       600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  675 (776)
                                    ++|++++|++++..+..+..+++|+    .|++++|++++..+ ......+|++|++++|++++..
T Consensus       152 --------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          152 --------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVP  216 (276)
T ss_dssp             --------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCC
T ss_pred             --------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecC
Confidence                          6677888888877777777777777    89999999985444 4445568999999999999777


Q ss_pred             CccCcCCCCCCeeeCCCCcceecCCCCC
Q 047152          676 PSSLSQLSGLSVMDLSYNNLSGKIPLGT  703 (776)
Q Consensus       676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~  703 (776)
                      +..+..+++|++|++++|+++|.+|.-.
T Consensus       217 ~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          217 DGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             TTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             HhHhcccccccEEEccCCcccccCCchH
Confidence            7778999999999999999999988643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4e-23  Score=213.96  Aligned_cols=195  Identities=24%  Similarity=0.190  Sum_probs=122.7

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      +.++++++.++...+..+.+++.|++++|++++..+..+..+++|++|+|++|.+++..+.  ..+++|++|++++|+++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~   90 (290)
T 1p9a_G           13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ   90 (290)
T ss_dssp             CEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS
T ss_pred             cEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC
Confidence            4444444444433233345677777777777766666677777777777777777643332  56677777777777776


Q ss_pred             ccCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCccccc
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIG  656 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  656 (776)
                       .+|..+..+++|++|+++++.+...    +..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus        91 -~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G           91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             -SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             -cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence             5566666666665555544433222    23344556677777777766566666777777777777777754444456


Q ss_pred             CcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecC
Q 047152          657 QLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI  699 (776)
Q Consensus       657 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  699 (776)
                      .+++|++|+|++|+++ .+|..+..+.+|+.+++++|++.|.+
T Consensus       170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            6777777777777776 56666666667777777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.6e-23  Score=213.38  Aligned_cols=205  Identities=22%  Similarity=0.208  Sum_probs=164.6

Q ss_pred             CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      +.++++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            45677777777777777666777777777777777777766666777777777778777777777777777777777777


Q ss_pred             cCCCccccc----ccccccccEEEccCCCCccC-CchhhhccccCCEEECcCCcccCcCcccccCcCCCC----eeeCcC
Q 047152          598 LYNRSQYEY----KSTLGLVKILDLSSNKLGGG-VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD----FLDLSR  668 (776)
Q Consensus       598 l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~  668 (776)
                      ++++.+...    ...+++|++|++++|++++. +|..++++++|++|++++|++++..+..+..+++|+    +|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            777654433    34667889999999999874 699999999999999999999988788888888888    899999


Q ss_pred             ceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152          669 NQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       669 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      |++++..+..+.. .+|+.|++++|.+++..+.. ..+..+..+.+.+||+.|+|+
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9999776666554 58999999999999655433 457788889999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=8.6e-23  Score=207.16  Aligned_cols=210  Identities=20%  Similarity=0.202  Sum_probs=168.6

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      +.++++++.++...+...++++.|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|+++
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence            45566666665433334678999999999999999989999999999999999999888888999999999999999999


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      +..+..|..+++|                    ++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++
T Consensus        97 ~~~~~~~~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           97 SLPLGVFDHLTQL--------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccChhHhcccCCC--------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            8777777777776                    78999999999777777899999999999999999777778999999


Q ss_pred             CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCccccc------ccccccCCCCCCCCCCCCCCCCC
Q 047152          661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSF------NELVYAGNPELCGLPLRNKCPDE  731 (776)
Q Consensus       661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gN~~lc~~~l~~~c~~~  731 (776)
                      |++|+|++|++++..|..+..+++|++|++++|+++|..+....+..+      ......|+ .+|+.|....|..+
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            999999999999888889999999999999999999874432222111      11122344 46777766778765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.1e-22  Score=205.62  Aligned_cols=205  Identities=23%  Similarity=0.198  Sum_probs=169.4

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCC
Q 047152          107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS  186 (776)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  186 (776)
                      .+.+++++++++++++.++  .+|..+.  +++++|+|++|++++..|..|.++++|++|++++|.+..   .+..+.++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EECCSCCT
T ss_pred             cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccCCCCCC
Confidence            4677889999999999998  4676664  689999999999988778889999999999999998863   23347888


Q ss_pred             CCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCC
Q 047152          187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSL  266 (776)
Q Consensus       187 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~  266 (776)
                      +|++|++++|.++.+   +..+..+++|++|++++|++++..+..+..+   ++|++|++++|++++..+..+..+++  
T Consensus        78 ~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~--  149 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPK--  149 (290)
T ss_dssp             TCCEEECCSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--
T ss_pred             cCCEEECCCCcCCcC---chhhccCCCCCEEECCCCcCcccCHHHHcCC---CCCCEEECCCCCCCccChhhcccccC--
Confidence            999999999988864   4567888899999999999988887888887   88999999999888766666777777  


Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCC
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKG  326 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~  326 (776)
                      |+.|++++|++++..+..|..+++|++|++++|+++.+|..+....+|+++++++|.+..
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            888888888888766667788888888888888888888888878888888888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.3e-22  Score=208.34  Aligned_cols=225  Identities=22%  Similarity=0.303  Sum_probs=126.3

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      ..+++..+.+.+.   .....+++|++|++++|.++. ++ .++.+++|++|++++|.+..   ++.             
T Consensus        22 ~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~---~~~-------------   80 (272)
T 3rfs_A           22 IKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD---ISA-------------   80 (272)
T ss_dssp             HHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC---CGG-------------
T ss_pred             HHHHhcCcccccc---cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC---chh-------------
Confidence            3444444444321   233445556666666655542 22 34555555555555555432   223             


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                                   +.++++|++|++++|.+++..+..+..+   ++|++|++++|++++..+..+..+++  |++|++++
T Consensus        81 -------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~  142 (272)
T 3rfs_A           81 -------------LKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTN--LTYLNLAH  142 (272)
T ss_dssp             -------------GTTCTTCCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--CCEEECCS
T ss_pred             -------------hcCCCCCCEEECCCCccCccChhHhcCC---cCCCEEECCCCcCCccCHHHhccCCC--CCEEECCC
Confidence                         4444455555555555544444444444   55555555555555444444455555  56666666


Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE  353 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~  353 (776)
                      |++++..+..++.+++|++|++++|+++++| ..+..+++|++|++++|.+++..+..+..++      +|++|++++|.
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~  216 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT------SLQYIWLHDNP  216 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT------TCCEEECCSSC
T ss_pred             CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc------CCCEEEccCCC
Confidence            6665555555666667777777777666643 3356666666666666666666665556555      67777777776


Q ss_pred             ccccCCCccCCCCCCEEeccCccccccchhcccCCCC
Q 047152          354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK  390 (776)
Q Consensus       354 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  390 (776)
                      +.+.      +++|+.++++.|.++|.+|.+++.+..
T Consensus       217 ~~~~------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          217 WDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             BCCC------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cccc------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            6533      445667777777777777766665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.3e-23  Score=221.54  Aligned_cols=237  Identities=21%  Similarity=0.222  Sum_probs=164.9

Q ss_pred             CCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCC--CCCCEEeCCCCCCCCCCCCccccCCCCCCEEec
Q 047152           67 KRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKL--QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGL  144 (776)
Q Consensus        67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  144 (776)
                      +..|.+|.++.|+  ...++.+++++     +.+.   +..+..+  +++++|++++|.+.+. .+ .+..+++|++|++
T Consensus        33 ~~vc~~W~~~~~~--~~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L  100 (336)
T 2ast_B           33 SGVCKRWYRLASD--ESLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDL  100 (336)
T ss_dssp             TSSCHHHHHHHTC--STTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEEC
T ss_pred             HHHHHHHHHHhcC--chhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEc
Confidence            3457789998875  34577889987     3443   3456666  8899999999988864 44 3567899999999


Q ss_pred             CCCCCCCC-CCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCC-CCCCcchhhHhhcCCCCCCEEEccCC
Q 047152          145 SSAEFAGP-IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN-DLSNFSNWVQLLSKLHSLTTLSLYSC  222 (776)
Q Consensus       145 s~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n  222 (776)
                      ++|.+++. +|..+..+++|++|++++|.+.+ ..+..++++++|++|++++| .+++. .++..+.++++|++|++++|
T Consensus       101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCC
T ss_pred             cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCC
Confidence            99988765 77778888999999999888754 44556777888888888888 45542 24566777788888888888


Q ss_pred             -CCCCC-CchhhhcCCCCC-CccEEEcCCC--CCC-CCchhhHhhcCCCCcCEEEccCCc-cccCcchhhcCCCCCCEEE
Q 047152          223 -DLPPI-IPSSLLNLNSSN-SLEVIDLTEN--NLT-NSVYPWLFNVSSSLVDRISLPSNQ-LQGSIPEAFGRMVSLRYLD  295 (776)
Q Consensus       223 -~l~~~-~~~~l~~l~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~  295 (776)
                       .+++. ++..+..+   + +|++|++++|  .++ +.++..+..+++  |+.|++++|. +++..+..+..+++|++|+
T Consensus       179 ~~l~~~~~~~~~~~l---~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          179 FDFTEKHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             TTCCHHHHHHHHHHS---CTTCCEEECCSCGGGSCHHHHHHHHHHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CCcChHHHHHHHHhc---ccCCCEEEeCCCcccCCHHHHHHHHhhCCC--CCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence             77654 45556666   6 7777777777  444 345555666666  7777777776 5555566666667777777


Q ss_pred             ccCCC-CCC-CchhhcccCCCcEEeccCC
Q 047152          296 LSSNE-LRG-IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       296 L~~n~-l~~-ip~~l~~l~~L~~L~Ls~n  322 (776)
                      +++|. +.. ....+.++++|++|++++|
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            77764 221 1124556666666666666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=7.1e-23  Score=219.78  Aligned_cols=261  Identities=22%  Similarity=0.225  Sum_probs=128.9

Q ss_pred             EeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCC----ccCCCCC-CCCEEeccCCCCCCCCCchhhccC-----C
Q 047152          117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIP----HQLGNLS-RLQFLDLSFNNLFSGENLDWLSHL-----S  186 (776)
Q Consensus       117 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l-----~  186 (776)
                      ++++.|.+++. +|..+...++|++|+|++|.+++..+    ..+.+++ +|++|+|++|.+.. ..+..+..+     +
T Consensus         3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCT
T ss_pred             cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCC
Confidence            45555555553 45555544456666666665554444    4444555 56666666555543 223333332     5


Q ss_pred             CCcEEEccCCCCCCcc--hhhHhhcCC-CCCCEEEccCCCCCCCCchhhhc-CCC-CCCccEEEcCCCCCCCCchhhH--
Q 047152          187 SLIYLYLDLNDLSNFS--NWVQLLSKL-HSLTTLSLYSCDLPPIIPSSLLN-LNS-SNSLEVIDLTENNLTNSVYPWL--  259 (776)
Q Consensus       187 ~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~-l~~-~~~L~~L~Ls~n~l~~~~~~~l--  259 (776)
                      +|++|++++|.+++..  .+...+..+ ++|++|++++|.+++..+..+.. +.. .++|++|++++|.+++..+..+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            5555555555554421  122234444 56666666666665555444332 111 1456666666666654333322  


Q ss_pred             --hhcC-CCCcCEEEccCCccccCcchhh----cCC-CCCCEEEccCCCCCC-----Cchhhcc-cCCCcEEeccCCcCC
Q 047152          260 --FNVS-SSLVDRISLPSNQLQGSIPEAF----GRM-VSLRYLDLSSNELRG-----IPKFLGN-MCGLKILYLSGKELK  325 (776)
Q Consensus       260 --~~~~-~~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~-----ip~~l~~-l~~L~~L~Ls~n~l~  325 (776)
                        .... +  |++|++++|++++..+..+    ..+ ++|++|+|++|.+++     ++..+.. .++|++|++++|.++
T Consensus       161 ~l~~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          161 ILAAIPAN--VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHTSCTT--CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHhcCCcc--ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence              2222 3  5555555555554444322    233 355555555555554     3334433 235555555555555


Q ss_pred             CccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccc-------cchhcccCCCCCcEEECCC
Q 047152          326 GQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNG-------TIHKSIGQLFKLEMLKLNG  398 (776)
Q Consensus       326 ~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-------~~~~~l~~l~~L~~L~L~~  398 (776)
                      +..+..+..+                         +..+++|++|++++|.+.+       .++..+..+++|++|++++
T Consensus       239 ~~~~~~l~~~-------------------------~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          239 GPSLENLKLL-------------------------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             CCCHHHHHHT-------------------------TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             cHHHHHHHHH-------------------------HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence            4443333221                         2344455555555555322       2233455666777777777


Q ss_pred             cccccccc
Q 047152          399 NSLGGVIS  406 (776)
Q Consensus       399 N~l~~~~~  406 (776)
                      |.+.+..+
T Consensus       294 N~l~~~~~  301 (362)
T 3goz_A          294 KEIHPSHS  301 (362)
T ss_dssp             CBCCGGGC
T ss_pred             CcCCCcch
Confidence            77765543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=9.2e-22  Score=202.12  Aligned_cols=182  Identities=24%  Similarity=0.289  Sum_probs=116.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +..+++|+.|++++|.+..  ++ .+..+++|++|++++|.+++ + ..++.+++|++|++++|.+.. ..+..++++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS-LPNGVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTT
T ss_pred             cccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc-cChhHhcCCcC
Confidence            5567888888888888873  33 47788888888888888875 3 467888888888888888764 34445677777


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|++++.+  +..++++++|++|++++|.+++..+..+..+   ++|++|++++|++++..+..+..+++  |
T Consensus       111 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L  183 (272)
T 3rfs_A          111 LKELVLVENQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---TNLTELDLSYNQLQSLPEGVFDKLTQ--L  183 (272)
T ss_dssp             CCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTT--C
T ss_pred             CCEEECCCCcCCccC--HHHhccCCCCCEEECCCCccCccCHHHhccC---ccCCEEECCCCCcCccCHHHhcCCcc--C
Confidence            777777777776642  2345666666666666666666555555555   56666666666555444443444444  4


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCC
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR  302 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  302 (776)
                      +.|++++|++++..+..+..+++|++|++++|.+.
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            55555555554444444444455555555544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2e-23  Score=226.43  Aligned_cols=248  Identities=21%  Similarity=0.186  Sum_probs=142.8

Q ss_pred             CCccccCCCCCCEEecCCCCCCCCCC----ccCCCCCCCCEEeccCCCCCCC--CCchhhccCCCCcEEEccCCCCCCcc
Q 047152          129 IPEFLGSLGKLSYLGLSSAEFAGPIP----HQLGNLSRLQFLDLSFNNLFSG--ENLDWLSHLSSLIYLYLDLNDLSNFS  202 (776)
Q Consensus       129 ~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~  202 (776)
                      ++..+..+++|++|+|++|.+.+..+    ..+..+++|++|+|++|.+...  ..+..+                   .
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~-------------------~   84 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL-------------------R   84 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH-------------------H
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH-------------------H
Confidence            55667777788888888887775433    3366777777777777654311  111111                   0


Q ss_pred             hhhHhhcCCCCCCEEEccCCCCCC----CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhh----c---------CCC
Q 047152          203 NWVQLLSKLHSLTTLSLYSCDLPP----IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN----V---------SSS  265 (776)
Q Consensus       203 ~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~---------~~~  265 (776)
                      .+...+..+++|++|+|++|.+.+    .++..+..+   ++|++|++++|.+++..+..+..    +         ++ 
T Consensus        85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-  160 (386)
T 2ca6_A           85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH---TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-  160 (386)
T ss_dssp             HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC---TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC---CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-
Confidence            112223445555555555555544    233444444   55555555555554332222222    2         44 


Q ss_pred             CcCEEEccCCccc-cCcc---hhhcCCCCCCEEEccCCCCCC------CchhhcccCCCcEEeccCCcCC----CccchH
Q 047152          266 LVDRISLPSNQLQ-GSIP---EAFGRMVSLRYLDLSSNELRG------IPKFLGNMCGLKILYLSGKELK----GQLSEF  331 (776)
Q Consensus       266 ~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~------ip~~l~~l~~L~~L~Ls~n~l~----~~~~~~  331 (776)
                       |++|++++|+++ +.++   ..+..+++|++|++++|.++.      +|..+..+++|++|++++|.++    ..++..
T Consensus       161 -L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          161 -LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             -CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             -CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence             666666666665 3333   345566677777777776662      2225666667777777777665    444555


Q ss_pred             HhhccCCCcCCCccEEEccccccccc----CCC-c--cCCCCCCEEeccCccccc----cchhcc-cCCCCCcEEECCCc
Q 047152          332 IQDLSSGCTKNSLEWLHLSSNEITGS----MPN-L--GEFSSLKQLNLENNLLNG----TIHKSI-GQLFKLEMLKLNGN  399 (776)
Q Consensus       332 ~~~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L~~N  399 (776)
                      +..++      +|++|+|++|.+++.    ++. +  +.+++|++|++++|.+++    .+|..+ .++++|++|++++|
T Consensus       240 l~~~~------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          240 LKSWP------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             GGGCT------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HccCC------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            55555      677777777766643    122 3  336777777777777776    366666 45677778888887


Q ss_pred             ccccccc
Q 047152          400 SLGGVIS  406 (776)
Q Consensus       400 ~l~~~~~  406 (776)
                      .+++..+
T Consensus       314 ~l~~~~~  320 (386)
T 2ca6_A          314 RFSEEDD  320 (386)
T ss_dssp             BSCTTSH
T ss_pred             cCCcchh
Confidence            7776553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3e-22  Score=214.88  Aligned_cols=262  Identities=21%  Similarity=0.225  Sum_probs=160.5

Q ss_pred             EEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCc----hhhccCC-CCcEEEccCCCCCCcc--hhhHhhcCC-C
Q 047152          141 YLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENL----DWLSHLS-SLIYLYLDLNDLSNFS--NWVQLLSKL-H  212 (776)
Q Consensus       141 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~--~~~~~l~~l-~  212 (776)
                      +++++.|.++|.+|..+...++|++|+|++|.+.. ..+    ..+.+++ +|++|++++|.+++..  .+...+... +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            46788888888888777777778888888888764 333    4455565 6666666666665531  111222222 5


Q ss_pred             CCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc-CCCCcCEEEccCCccccCcchhh----cC
Q 047152          213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV-SSSLVDRISLPSNQLQGSIPEAF----GR  287 (776)
Q Consensus       213 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-~~~~L~~L~L~~n~l~~~~p~~l----~~  287 (776)
                      +|++|++++|.+++..+..+...                       +... ++  |++|++++|++++..+..+    ..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~-----------------------l~~~~~~--L~~L~Ls~N~l~~~~~~~l~~~l~~  135 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKT-----------------------LAAIPFT--ITVLDLGWNDFSSKSSSEFKQAFSN  135 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHH-----------------------HHTSCTT--CCEEECCSSCGGGSCHHHHHHHHTT
T ss_pred             CccEEECcCCcCChHHHHHHHHH-----------------------HHhCCCC--ccEEECcCCcCCcHHHHHHHHHHHh
Confidence            55555555555554444333221                       1111 33  5555555555554443332    23


Q ss_pred             -CCCCCEEEccCCCCCC-----CchhhcccC-CCcEEeccCCcCCCccchHHhhccCCCcC-CCccEEEcccccccccCC
Q 047152          288 -MVSLRYLDLSSNELRG-----IPKFLGNMC-GLKILYLSGKELKGQLSEFIQDLSSGCTK-NSLEWLHLSSNEITGSMP  359 (776)
Q Consensus       288 -l~~L~~L~L~~n~l~~-----ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~-~~L~~L~L~~n~l~~~~~  359 (776)
                       .++|++|++++|.+++     ++..+..++ +|++|++++|.+++..+..+...-.  .. .+|++|+|++|.+++...
T Consensus       136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~i~~~~~  213 (362)
T 3goz_A          136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA--SIPASVTSLDLSANLLGLKSY  213 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTTSCGGGSCH
T ss_pred             CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH--hCCCCCCEEECCCCCCChhHH
Confidence             2466777777776663     334445554 7777777777777666655544300  00 168888888887775221


Q ss_pred             -----CccC-CCCCCEEeccCccccccch----hcccCCCCCcEEECCCccccccccH------HhhhCCCCCcEEECCC
Q 047152          360 -----NLGE-FSSLKQLNLENNLLNGTIH----KSIGQLFKLEMLKLNGNSLGGVISE------ALFSNLSRLAALDLAD  423 (776)
Q Consensus       360 -----~l~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~------~~~~~l~~L~~L~Ls~  423 (776)
                           .+.. .++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+.      ..+..+++|+.||+++
T Consensus       214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence                 1333 4589999999999887544    3457789999999999996543322      1356788899999999


Q ss_pred             Cccceec
Q 047152          424 NSLTLEF  430 (776)
Q Consensus       424 n~l~~~~  430 (776)
                      |++....
T Consensus       294 N~l~~~~  300 (362)
T 3goz_A          294 KEIHPSH  300 (362)
T ss_dssp             CBCCGGG
T ss_pred             CcCCCcc
Confidence            9987653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=4.5e-22  Score=211.53  Aligned_cols=199  Identities=25%  Similarity=0.258  Sum_probs=121.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCC--CCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSL--GKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      ..++.++++++.+.    |..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.....+..+.++++|+
T Consensus        47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            34788999988775    4556666  8899999999998876655 557888888888888765312444566777777


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCC-CCCCC-CchhhhcCCCCCCccEEEcCCC-CCCCC-chhhHhhcC-C
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC-DLPPI-IPSSLLNLNSSNSLEVIDLTEN-NLTNS-VYPWLFNVS-S  264 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~~~~L~~L~Ls~n-~l~~~-~~~~l~~~~-~  264 (776)
                      +|++++|.+++  ..+..++++++|++|++++| .+++. ++..+..+   ++|++|++++| .+++. ++..+..++ +
T Consensus       122 ~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          122 NLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC---SRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             EEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC---TTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             EEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC---CCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            77777776654  34556666677777777766 45442 44445555   66666666666 55543 344455555 5


Q ss_pred             CCcCEEEccCC--ccc-cCcchhhcCCCCCCEEEccCCC-CCC-CchhhcccCCCcEEeccCC
Q 047152          265 SLVDRISLPSN--QLQ-GSIPEAFGRMVSLRYLDLSSNE-LRG-IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       265 ~~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~-ip~~l~~l~~L~~L~Ls~n  322 (776)
                        |++|++++|  .++ +.++..+..+++|++|++++|. +++ .+..+..+++|++|++++|
T Consensus       197 --L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          197 --ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             --CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             --CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence              555555555  233 2334444455555555555554 333 3344444455555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.7e-22  Score=217.50  Aligned_cols=238  Identities=18%  Similarity=0.231  Sum_probs=155.5

Q ss_pred             hhhccCCCCcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCC---CCCCCchhh-------hcCCCCCCccEEEcC
Q 047152          180 DWLSHLSSLIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCD---LPPIIPSSL-------LNLNSSNSLEVIDLT  247 (776)
Q Consensus       180 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~~~~L~~L~Ls  247 (776)
                      ..+..+++|++|++++|.+...  ..++..+..+++|++|+|++|.   +.+.+|..+       ..+   ++|++|+++
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~---~~L~~L~Ls  102 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC---PKLHTVRLS  102 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC---TTCCEEECC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC---CcccEEECC
Confidence            3455566666666666666543  1133446677788888887754   344455444       445   888999999


Q ss_pred             CCCCCC----CchhhHhhcCCCCcCEEEccCCccccCcchhhc----CC---------CCCCEEEccCCCCCC--Cc---
Q 047152          248 ENNLTN----SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG----RM---------VSLRYLDLSSNELRG--IP---  305 (776)
Q Consensus       248 ~n~l~~----~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~~--ip---  305 (776)
                      +|.+++    .++..+..+++  |++|++++|.+++..+..+.    .+         ++|++|++++|+++.  +|   
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~--L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTT--CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCC--CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            998887    46667777777  88888888888654433333    33         788888888888863  44   


Q ss_pred             hhhcccCCCcEEeccCCcCCCc-----cchHHhhccCCCcCCCccEEEccccccc----ccCCC-ccCCCCCCEEeccCc
Q 047152          306 KFLGNMCGLKILYLSGKELKGQ-----LSEFIQDLSSGCTKNSLEWLHLSSNEIT----GSMPN-LGEFSSLKQLNLENN  375 (776)
Q Consensus       306 ~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~~~~~~~L~~L~L~~n~l~----~~~~~-l~~l~~L~~L~Ls~n  375 (776)
                      ..+..+++|++|++++|.++..     .+..+..++      +|++|+|++|.++    +.+|. +..+++|++|++++|
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT------TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC------CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence            4566777888888888877632     222444555      6777777777774    33333 666777777777777


Q ss_pred             ccccc----chhccc--CCCCCcEEECCCccccc----cccHHhhhCCCCCcEEECCCCccce
Q 047152          376 LLNGT----IHKSIG--QLFKLEMLKLNGNSLGG----VISEALFSNLSRLAALDLADNSLTL  428 (776)
Q Consensus       376 ~l~~~----~~~~l~--~l~~L~~L~L~~N~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~  428 (776)
                      .+++.    ++..+.  .+++|++|++++|.+++    .+|...+.++++|++|++++|++++
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            77654    445553  36777777777777765    3555333556777777777776653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=8.7e-21  Score=198.40  Aligned_cols=195  Identities=22%  Similarity=0.280  Sum_probs=122.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +.++++|++|++++|.+..  +| .+..+++|++|++++|++++. +. +..+++|++|++++|.+..   .+.+.++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN---VSAIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC---CGGGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC---chhhcCCCC
Confidence            3456777888888887763  44 467778888888888877743 33 7777778888887777643   345666777


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|.+++.+    .+..+++|++|++++|.+++..+  +..+   ++|++|++++|+++               
T Consensus       109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~---------------  164 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVS---------------  164 (308)
T ss_dssp             CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCC---------------
T ss_pred             CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCC---------------
Confidence            777777777766642    25566666666666666555433  3344   45555555555444               


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL  347 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L  347 (776)
                                 +..+  +..+++|++|++++|.+++++. +..+++|++|++++|.+++..+  +..++      +|++|
T Consensus       165 -----------~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~------~L~~L  222 (308)
T 1h6u_A          165 -----------DLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS------NLFIV  222 (308)
T ss_dssp             -----------CCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT------TCCEE
T ss_pred             -----------CChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCC------CCCEE
Confidence                       3222  5556666666666666666544 5666666666666666665543  44454      67777


Q ss_pred             Ecccccccc
Q 047152          348 HLSSNEITG  356 (776)
Q Consensus       348 ~L~~n~l~~  356 (776)
                      ++++|.+++
T Consensus       223 ~l~~N~i~~  231 (308)
T 1h6u_A          223 TLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEC
T ss_pred             EccCCeeec
Confidence            777777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=9.7e-22  Score=206.14  Aligned_cols=229  Identities=18%  Similarity=0.160  Sum_probs=180.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCc--cccCCCCCCEEecCCCCCCCCCCccC--CCCCCCCEEeccCCCCCCCCC---chhh
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL--GNLSRLQFLDLSFNNLFSGEN---LDWL  182 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~---~~~l  182 (776)
                      +...++.+.+.++.++...+..  .+..+++|++|++++|.+.+..|..+  +.+++|++|++++|.+.....   ...+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3445788999888775321111  12235679999999999999999888  899999999999999875222   1345


Q ss_pred             ccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC--Cc--hhhhcCCCCCCccEEEcCCCCCCCCchh-
Q 047152          183 SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI--IP--SSLLNLNSSNSLEVIDLTENNLTNSVYP-  257 (776)
Q Consensus       183 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~--~~l~~l~~~~~L~~L~Ls~n~l~~~~~~-  257 (776)
                      ..+++|++|++++|.+.+.+  +..++++++|++|++++|++.+.  .+  ..+..+   ++|++|++++|+++. ++. 
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~-l~~~  215 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF---PAIQNLALRNTGMET-PTGV  215 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS---CCCCSCBCCSSCCCC-HHHH
T ss_pred             hhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC---CCCCEEECCCCCCCc-hHHH
Confidence            67999999999999998753  46788999999999999998653  11  222455   899999999999973 333 


Q ss_pred             ---hHhhcCCCCcCEEEccCCccccCcchhhcCC---CCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchH
Q 047152          258 ---WLFNVSSSLVDRISLPSNQLQGSIPEAFGRM---VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEF  331 (776)
Q Consensus       258 ---~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~  331 (776)
                         .+..+++  |++|++++|++++..|..+..+   ++|++|++++|+++.+|..+.  ++|++|++++|.+++.. . 
T Consensus       216 ~~~l~~~l~~--L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~-  289 (310)
T 4glp_A          216 CAALAAAGVQ--PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-Q-  289 (310)
T ss_dssp             HHHHHHHTCC--CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-C-
T ss_pred             HHHHHhcCCC--CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-h-
Confidence               2467788  9999999999999888888776   699999999999999998775  79999999999999752 2 


Q ss_pred             HhhccCCCcCCCccEEEcccccccc
Q 047152          332 IQDLSSGCTKNSLEWLHLSSNEITG  356 (776)
Q Consensus       332 ~~~l~~~~~~~~L~~L~L~~n~l~~  356 (776)
                      +..++      +|++|++++|.++.
T Consensus       290 ~~~l~------~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 PDELP------EVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTSCC------CCSCEECSSTTTSC
T ss_pred             hhhCC------CccEEECcCCCCCC
Confidence            45555      89999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=204.03  Aligned_cols=227  Identities=20%  Similarity=0.215  Sum_probs=182.2

Q ss_pred             cEEEEECCCCCCCCCCCcee-cc--ccccCCCCCCEEeCCCCCCCCCCCCccc--cCCCCCCEEecCCCCCCCCCC----
Q 047152           84 HVNKLDLQPIGFDSFPLRGK-IT--PALLKLQHLTYLDLSRNNFSGSSIPEFL--GSLGKLSYLGLSSAEFAGPIP----  154 (776)
Q Consensus        84 ~v~~L~L~~~~~~~~~l~g~-~~--~~l~~l~~L~~L~Ls~n~l~~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----  154 (776)
                      +++.+.+.+.     .+... +.  ..+..+++|++|++++|.+.+. .|..+  ..+++|++|++++|++++..+    
T Consensus        65 ~l~~l~l~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  138 (310)
T 4glp_A           65 RVRRLTVGAA-----QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAE  138 (310)
T ss_dssp             CCCEEEECSC-----CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred             ceeEEEEeCC-----cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence            5777888773     33321 11  1233457799999999999986 77777  899999999999999998666    


Q ss_pred             ccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhh--HhhcCCCCCCEEEccCCCCCCCCc--h
Q 047152          155 HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV--QLLSKLHSLTTLSLYSCDLPPIIP--S  230 (776)
Q Consensus       155 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~--~  230 (776)
                      ..+..+++|++|++++|.+.. ..+..++++++|++|++++|++.+...++  ..++++++|++|++++|+++...+  .
T Consensus       139 ~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             HHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             HHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            455689999999999999965 55678899999999999999987632232  224789999999999999974322  1


Q ss_pred             -hhhcCCCCCCccEEEcCCCCCCCCchhhHhhc---CCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch
Q 047152          231 -SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV---SSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK  306 (776)
Q Consensus       231 -~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~---~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~  306 (776)
                       .+..+   ++|++|++++|++++..|+.+..+   ++  |++|++++|+++ .+|..+.  ++|++|++++|+++++|.
T Consensus       218 ~l~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          218 ALAAAG---VQPHSLDLSHNSLRATVNPSAPRCMWSSA--LNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             HHHHHT---CCCSSEECTTSCCCCCCCSCCSSCCCCTT--CCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred             HHHhcC---CCCCEEECCCCCCCccchhhHHhccCcCc--CCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch
Confidence             34667   899999999999999888777776   46  999999999999 5677664  799999999999999876


Q ss_pred             hhcccCCCcEEeccCCcCCC
Q 047152          307 FLGNMCGLKILYLSGKELKG  326 (776)
Q Consensus       307 ~l~~l~~L~~L~Ls~n~l~~  326 (776)
                       +..+++|++|++++|.++.
T Consensus       290 -~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 -PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -TTSCCCCSCEECSSTTTSC
T ss_pred             -hhhCCCccEEECcCCCCCC
Confidence             6888999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.8e-21  Score=191.67  Aligned_cols=198  Identities=18%  Similarity=0.229  Sum_probs=143.1

Q ss_pred             CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCc-ccccCChhhhCCCCCcEEeccC-CcccccCCccccccCCCc
Q 047152          517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL-LSGKLPDCWFQFDSLVILNLAN-NNFFGKIPNSMGFLHNIR  594 (776)
Q Consensus       517 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~  594 (776)
                      ...++++|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            33456666666666666666566666666666666665 5544445566666666666666 666655555666666666


Q ss_pred             EEecCCCcccccc--ccccccc---EEEccCC-CCccCCchhhhccccCC-EEECcCCcccCcCcccccCcCCCCeeeCc
Q 047152          595 SLSLYNRSQYEYK--STLGLVK---ILDLSSN-KLGGGVPKEIMDLVGLV-ALNLSRNNLTGQITPKIGQLKSLDFLDLS  667 (776)
Q Consensus       595 ~L~l~~~~~~~~~--~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  667 (776)
                      +|+++++.+..+.  ..+++|+   +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|++|+++
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            6666665433322  3445555   9999999 99977777899999999 9999999999 666655555899999999


Q ss_pred             Cce-eeecCCccCcCC-CCCCeeeCCCCcceecCCCCCcccccccccccCCC
Q 047152          668 RNQ-FFGGIPSSLSQL-SGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNP  717 (776)
Q Consensus       668 ~N~-l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~  717 (776)
                      +|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+..+..+.+.++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence            995 997778889999 999999999999984 5654 67777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.8e-21  Score=192.82  Aligned_cols=197  Identities=23%  Similarity=0.258  Sum_probs=153.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC-CCCCCCccCCCCCCCCEEeccC-CCCCCCCCchhhccCCCCc
Q 047152          112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE-FAGPIPHQLGNLSRLQFLDLSF-NNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~  189 (776)
                      ++|++|++++|.+++. .+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++.. ..+..|.++++|+
T Consensus        31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCC
Confidence            3899999999999864 45578899999999999997 8765566889999999999998 88864 4455788899999


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCC---EEEccCC-CCCCCCchhhhcCCCCCCcc-EEEcCCCCCCCCchhhHhhcCC
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLT---TLSLYSC-DLPPIIPSSLLNLNSSNSLE-VIDLTENNLTNSVYPWLFNVSS  264 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~~~  264 (776)
                      +|++++|.+++++.    +..+++|+   +|++++| .+++..+..+..+   ++|+ +|++++|+++ .+|......++
T Consensus       109 ~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~l~-~i~~~~~~~~~  180 (239)
T 2xwt_C          109 FLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNGFT-SVQGYAFNGTK  180 (239)
T ss_dssp             EEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred             EEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCCCc-ccCHhhcCCCC
Confidence            99999999888542    67777777   8889888 8877777777777   8888 8888888887 55554444455


Q ss_pred             CCcCEEEccCCc-cccCcchhhcCC-CCCCEEEccCCCCCCCchhhcccCCCcEEeccCC
Q 047152          265 SLVDRISLPSNQ-LQGSIPEAFGRM-VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       265 ~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n  322 (776)
                        |+.|++++|+ +++..+..|..+ ++|++|++++|+++++|..  .+++|+.|+++++
T Consensus       181 --L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 --LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             --EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             --CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence              8888888884 776666677777 7888888888888777654  5667777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.7e-20  Score=187.72  Aligned_cols=179  Identities=21%  Similarity=0.180  Sum_probs=158.0

Q ss_pred             CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152          520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY  599 (776)
Q Consensus       520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  599 (776)
                      +.++++++++.++.......   ++++.|+|++|.+++..+..|.++++|++|++++|++++..|..+..+++|      
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------   85 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL------   85 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------
T ss_pred             CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC------
Confidence            56789999999986554332   689999999999998888899999999999999999998888878777777      


Q ss_pred             CCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccC
Q 047152          600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL  679 (776)
Q Consensus       600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  679 (776)
                                    ++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+
T Consensus        86 --------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  151 (251)
T 3m19_A           86 --------------GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF  151 (251)
T ss_dssp             --------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             --------------CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence                          789999999998888889999999999999999997777778999999999999999998877789


Q ss_pred             cCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCC
Q 047152          680 SQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCG  721 (776)
Q Consensus       680 ~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~  721 (776)
                      ..+++|++|++++|++++..|.. ..+..+..+.+.+|++-|.
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999999999766633 4567888899999999997

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=7.1e-20  Score=191.46  Aligned_cols=207  Identities=23%  Similarity=0.315  Sum_probs=145.7

Q ss_pred             eCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCC
Q 047152          118 DLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND  197 (776)
Q Consensus       118 ~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~  197 (776)
                      .+..+.+.+.   .....+++|++|++++|.++. +| .+..+++|++|++++|.+..  .+. +.++++|++|++++|.
T Consensus        25 ~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           25 AAGKSNVTDT---VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNP   96 (308)
T ss_dssp             HTTCSSTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCC
T ss_pred             HhCCCCcCce---ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCc
Confidence            4444544431   123456777788887777763 44 46677777777777777653  222 6666666666666666


Q ss_pred             CCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcc
Q 047152          198 LSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQL  277 (776)
Q Consensus       198 l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l  277 (776)
                      +++.+    .+..+++|++|++++|.+++..                             .+..+++  |+.|++++|++
T Consensus        97 l~~~~----~~~~l~~L~~L~l~~n~l~~~~-----------------------------~l~~l~~--L~~L~l~~n~l  141 (308)
T 1h6u_A           97 LKNVS----AIAGLQSIKTLDLTSTQITDVT-----------------------------PLAGLSN--LQVLYLDLNQI  141 (308)
T ss_dssp             CSCCG----GGTTCTTCCEEECTTSCCCCCG-----------------------------GGTTCTT--CCEEECCSSCC
T ss_pred             CCCch----hhcCCCCCCEEECCCCCCCCch-----------------------------hhcCCCC--CCEEECCCCcc
Confidence            65531    3445555555555555544421                             1444444  66666666666


Q ss_pred             ccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc
Q 047152          278 QGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS  357 (776)
Q Consensus       278 ~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~  357 (776)
                      ++..+  +..+++|++|++++|.+++++. +..+++|++|++++|.+++..+  +..++      +|++|++++|++++.
T Consensus       142 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          142 TNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLP------NLIEVHLKNNQISDV  210 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECTTSCCCBC
T ss_pred             CcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCC------CCCEEEccCCccCcc
Confidence            55433  7889999999999999999877 8999999999999999998765  66777      999999999999976


Q ss_pred             CCCccCCCCCCEEeccCccccc
Q 047152          358 MPNLGEFSSLKQLNLENNLLNG  379 (776)
Q Consensus       358 ~~~l~~l~~L~~L~Ls~n~l~~  379 (776)
                      .+ +..+++|+.|++++|.+++
T Consensus       211 ~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          211 SP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG-GTTCTTCCEEEEEEEEEEC
T ss_pred             cc-ccCCCCCCEEEccCCeeec
Confidence            64 8999999999999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=4e-20  Score=183.05  Aligned_cols=158  Identities=22%  Similarity=0.189  Sum_probs=130.2

Q ss_pred             cEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCC
Q 047152          522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN  600 (776)
Q Consensus       522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  600 (776)
                      +.+++++|.++.. |..+  .+.+++|+|++|++++..+ ..|..+++|++|++++|++++..+..|..+++|       
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-------   83 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-------   83 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence            3555666665543 2222  2346788888888886644 457788888999999888887777777777766       


Q ss_pred             CcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc
Q 047152          601 RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS  680 (776)
Q Consensus       601 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  680 (776)
                                   ++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|.
T Consensus        84 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           84 -------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             -------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             -------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence                         6788999999988888899999999999999999988899999999999999999999999899999


Q ss_pred             CCCCCCeeeCCCCcceecCCCC
Q 047152          681 QLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       681 ~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      .+++|++|++++|+++|.++..
T Consensus       151 ~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             TCTTCCEEECCSCCEECSGGGH
T ss_pred             CCCCCCEEEecCcCCcCCCchH
Confidence            9999999999999999987743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=6.3e-20  Score=180.30  Aligned_cols=175  Identities=22%  Similarity=0.198  Sum_probs=145.5

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      +.++++++.++......++++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            45666666666544445678999999999999888888888999999999999999776677889999999999999998


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      +..+..+..+++|                    ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus        90 ~~~~~~~~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  149 (208)
T 2o6s_A           90 SLPNGVFDKLTQL--------------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  149 (208)
T ss_dssp             CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ccCHhHhcCccCC--------------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence            7666666766666                    77899999999777777899999999999999999766666889999


Q ss_pred             CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152          661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      |++|++++|.+.+.       ++.|+.|+++.|.++|.+|..
T Consensus       150 L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          150 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred             ccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence            99999999987653       457899999999999999953

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7.9e-20  Score=204.98  Aligned_cols=211  Identities=21%  Similarity=0.320  Sum_probs=146.7

Q ss_pred             CCCCCCCCCCCCCC-----Cccce-eeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCc
Q 047152           58 LSSWRREDEKRDCC-----KWTGV-GCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPE  131 (776)
Q Consensus        58 ~~~W~~~~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~  131 (776)
                      +.+|.   .+.++|     .|.|+ .|.  .++++.|++++     +.+.+ +|..+  +++|++|+|++|.++  .+| 
T Consensus        33 l~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~-----n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip-   96 (571)
T 3cvr_A           33 WDKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNR-----LNLSS-LPDNL--PPQITVLEITQNALI--SLP-   96 (571)
T ss_dssp             HHHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCS-----SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC-
T ss_pred             HHHHh---ccCCccccccchhhhccccc--cCCccEEEeCC-----CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc-
Confidence            34565   244556     69999 675  35788999998     56665 66655  378999999999988  367 


Q ss_pred             cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCC
Q 047152          132 FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL  211 (776)
Q Consensus       132 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  211 (776)
                        ..+++|++|++++|++++ +|. +..  +|++|++++|++..  .+.   .+++|++|++++|.+++++.      .+
T Consensus        97 --~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~------~l  159 (571)
T 3cvr_A           97 --ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLPE------LP  159 (571)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC------CC
T ss_pred             --cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCCC------cC
Confidence              457889999999999886 776 655  88888888888764  222   56677777777777666432      34


Q ss_pred             CCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcC----
Q 047152          212 HSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR----  287 (776)
Q Consensus       212 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~----  287 (776)
                      ++|++|++++|.+++ +|. +.     ++                          |+.|++++|+++ .+|. +..    
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-l~-----~~--------------------------L~~L~Ls~N~L~-~lp~-~~~~L~~  204 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-LP-----ES--------------------------LEALDVSTNLLE-SLPA-VPVRNHH  204 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC-----TT--------------------------CCEEECCSSCCS-SCCC-CC-----
T ss_pred             CCcCEEECCCCCCCC-cch-hh-----CC--------------------------CCEEECcCCCCC-chhh-HHHhhhc
Confidence            555555555555544 222 21     33                          555555555555 3343 332    


Q ss_pred             -CCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhcc
Q 047152          288 -MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS  336 (776)
Q Consensus       288 -l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  336 (776)
                       .+.|+.|+|++|.++.+|..+..+++|++|++++|.+++.+|..+..+.
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence             2233999999999999999888899999999999999999999888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.1e-19  Score=179.82  Aligned_cols=155  Identities=18%  Similarity=0.202  Sum_probs=122.9

Q ss_pred             EEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCc
Q 047152          523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRS  602 (776)
Q Consensus       523 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~  602 (776)
                      .++++++.++..+.. +  .++++.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|         
T Consensus        15 ~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L---------   82 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL---------   82 (220)
T ss_dssp             EEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC---------
T ss_pred             EEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC---------
Confidence            455555555543222 2  1567778888888876666677788888888888888887777777777666         


Q ss_pred             ccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCC
Q 047152          603 QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL  682 (776)
Q Consensus       603 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  682 (776)
                                 ++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus        83 -----------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           83 -----------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence                       677888888886656667889999999999999998888899999999999999999998888889999


Q ss_pred             CCCCeeeCCCCcceecCC
Q 047152          683 SGLSVMDLSYNNLSGKIP  700 (776)
Q Consensus       683 ~~L~~L~ls~N~l~g~iP  700 (776)
                      ++|++|++++|++.|.++
T Consensus       152 ~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          152 RAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTCCEEECCSSCEECSGG
T ss_pred             CCCCEEEeCCCCcCCCCc
Confidence            999999999999998755

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.2e-19  Score=201.44  Aligned_cols=182  Identities=26%  Similarity=0.331  Sum_probs=130.3

Q ss_pred             cccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152          474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN  553 (776)
Q Consensus       474 ~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N  553 (776)
                      +++.|++++|.+++ +|. .+  ...++.|++++|+++ .+|..+++|++|++++|+|++ +|. +..  +|++|+|++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            68888888888876 555 22  133467777777776 455556677777777777766 333 332  6777777777


Q ss_pred             cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhc
Q 047152          554 LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD  633 (776)
Q Consensus       554 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  633 (776)
                      ++++ +|.   .+++|+.|++++|.+++ +|.                       .+++|++|+|++|++++ +|. |. 
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------------------~l~~L~~L~Ls~N~L~~-lp~-l~-  179 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE-----------------------LPTSLEVLSVRNNQLTF-LPE-LP-  179 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------------------CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC-----------------------cCCCcCEEECCCCCCCC-cch-hh-
Confidence            7765 454   46667777777777664 443                       23445888999999986 776 66 


Q ss_pred             cccCCEEECcCCcccCcCcccccCcCCC-------CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          634 LVGLVALNLSRNNLTGQITPKIGQLKSL-------DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       634 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                       ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence             88999999999998 6777 655  77       99999999998 6888888899999999999999988774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.9e-19  Score=175.59  Aligned_cols=184  Identities=24%  Similarity=0.306  Sum_probs=139.7

Q ss_pred             CCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCC
Q 047152           71 CKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFA  150 (776)
Q Consensus        71 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~  150 (776)
                      |.|.+|.|...                 ++. .+|..+  .++|++|++++|.+++. .+..+..+++|++|++++|+++
T Consensus         7 C~~~~v~c~~~-----------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   65 (208)
T 2o6s_A            7 CSGTTVECYSQ-----------------GRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQ   65 (208)
T ss_dssp             EETTEEECCSS-----------------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC
T ss_pred             ECCCEEEecCC-----------------Ccc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccC
Confidence            78999999642                 111 223222  35899999999999864 5566889999999999999999


Q ss_pred             CCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCch
Q 047152          151 GPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS  230 (776)
Q Consensus       151 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  230 (776)
                      +..+..|..+++|++|++++|++.. ..+..+.++++|++|++++|.+++++  +..+.++++|++|++++|.+++..+.
T Consensus        66 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           66 SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEECCCCccceeCHH
Confidence            7666678899999999999999874 44455788899999999999888753  24577888888888888888877776


Q ss_pred             hhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCC
Q 047152          231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS  290 (776)
Q Consensus       231 ~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  290 (776)
                      .+..+   ++|++|++++|.+.+..+       .  ++.|+++.|+++|.+|..++.++.
T Consensus       143 ~~~~l---~~L~~L~l~~N~~~~~~~-------~--l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          143 VFDRL---TSLQYIWLHDNPWDCTCP-------G--IRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTC---TTCCEEECCSCCBCCCTT-------T--THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhccC---CCccEEEecCCCeecCCC-------C--HHHHHHHHHhCCceeeccCccccC
Confidence            67766   788888888887765443       2  677777777777777776665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=3.7e-19  Score=177.36  Aligned_cols=184  Identities=21%  Similarity=0.209  Sum_probs=139.2

Q ss_pred             cEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152          522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR  601 (776)
Q Consensus       522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~  601 (776)
                      +.++.++++++......   .++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|..+++|        
T Consensus        22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L--------   90 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL--------   90 (229)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred             CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc--------
Confidence            44555555555433322   2678888888888888778888888888888888888876555666666666        


Q ss_pred             cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcC
Q 047152          602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQ  681 (776)
Q Consensus       602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  681 (776)
                                  ++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..
T Consensus        91 ------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           91 ------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             ------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence                        77889999999777777899999999999999999 78999999999999999999999877788999


Q ss_pred             CCCCCeeeCCCCcceecCCCCCcccccc------cccccCCCCCCCCCCCCCCCCC
Q 047152          682 LSGLSVMDLSYNNLSGKIPLGTQLQSFN------ELVYAGNPELCGLPLRNKCPDE  731 (776)
Q Consensus       682 l~~L~~L~ls~N~l~g~iP~~~~~~~~~------~~~~~gN~~lc~~~l~~~c~~~  731 (776)
                      +++|+.|++++|++.|.++....+..+-      ...+.|++  +..+....|..+
T Consensus       158 l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~--v~~~~~~~C~~~  211 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKA--VNDPDSAKCAGT  211 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE--EECTTCSBBTTT
T ss_pred             CCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcc--cCCCCcCccCCC
Confidence            9999999999999999877432222111      12344543  344445567654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.6e-19  Score=193.33  Aligned_cols=180  Identities=23%  Similarity=0.185  Sum_probs=150.7

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCcccc-CCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCS-LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF  579 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  579 (776)
                      ..++++++.++......+..++.|++++|+|++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            4567777776653333466789999999999998888887 899999999999999988888899999999999999999


Q ss_pred             cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccc---c
Q 047152          580 FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI---G  656 (776)
Q Consensus       580 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~  656 (776)
                      ++..+..|..+++|                    ++|+|++|++++..|..|..+++|+.|+|++|++++..+..+   .
T Consensus       101 ~~~~~~~~~~l~~L--------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  160 (361)
T 2xot_A          101 HTLDEFLFSDLQAL--------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN  160 (361)
T ss_dssp             CEECTTTTTTCTTC--------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred             CcCCHHHhCCCcCC--------------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence            98777778777777                    788999999998889999999999999999999996444444   5


Q ss_pred             CcCCCCeeeCcCceeeecCCccCcCCCC--CCeeeCCCCcceecCC
Q 047152          657 QLKSLDFLDLSRNQFFGGIPSSLSQLSG--LSVMDLSYNNLSGKIP  700 (776)
Q Consensus       657 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~g~iP  700 (776)
                      .+++|+.|||++|++++..+..+..++.  ++.|++++|++.|.+.
T Consensus       161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            7999999999999999766677888876  4889999999998654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=3e-19  Score=190.43  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=42.3

Q ss_pred             CCCCEEeCCCCCCCCCCCC-ccccCCCCCCEEecCCCCCCCCCCc-cCCCCCCCCE-EeccCCCCCCCCCchhhccCCCC
Q 047152          112 QHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPH-QLGNLSRLQF-LDLSFNNLFSGENLDWLSHLSSL  188 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~Ls~n~~~~~~~~~~l~~l~~L  188 (776)
                      +++++|+|++|+|+.  +| ..|.++++|++|+|++|++.+.+|. .|.++++|++ +.++.|++.. ..+..|.++++|
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence            455666666666653  33 3455566666666666665444442 3455555443 3334444432 223334444444


Q ss_pred             cEEEccCCCCCC
Q 047152          189 IYLYLDLNDLSN  200 (776)
Q Consensus       189 ~~L~Ls~n~l~~  200 (776)
                      ++|++++|++..
T Consensus       107 ~~L~l~~n~l~~  118 (350)
T 4ay9_X          107 QYLLISNTGIKH  118 (350)
T ss_dssp             CEEEEEEECCSS
T ss_pred             cccccccccccc
Confidence            444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=171.14  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=136.6

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF  579 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  579 (776)
                      +.+++++|.++...+..+..+++|++++|++++..+ ..+..+++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            466777777665333335678999999999998855 5688899999999999999988888999999999999999999


Q ss_pred             cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152          580 FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK  659 (776)
Q Consensus       580 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  659 (776)
                      ++..|..|..+++|                    ++|+|++|++++..|..|..+++|++|+|++|++++..|..|..++
T Consensus        94 ~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  153 (220)
T 2v70_A           94 ENVQHKMFKGLESL--------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH  153 (220)
T ss_dssp             CCCCGGGGTTCSSC--------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred             CccCHhHhcCCcCC--------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence            98888778877777                    7899999999998899999999999999999999988899999999


Q ss_pred             CCCeeeCcCceeeecCC
Q 047152          660 SLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       660 ~L~~L~Ls~N~l~~~~p  676 (776)
                      +|++|++++|.+.+..+
T Consensus       154 ~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          154 SLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCCEEECCSCCEECSGG
T ss_pred             CCCEEEecCcCCcCCCc
Confidence            99999999999987654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.4e-18  Score=185.32  Aligned_cols=125  Identities=14%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE-EEc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY-LYL  193 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~-L~L  193 (776)
                      ++++.++++++  ++|..+  .+++++|+|++|+++...+..|+++++|++|+|++|++.+......|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888888888  578766  3689999999999985444578999999999999998764333456777777665 455


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCC
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTE  248 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~  248 (776)
                      +.|+++.++  +..+..+++|++|++++|++....+..+...   .++..+++.+
T Consensus        88 ~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~l~~l~l~~  137 (350)
T 4ay9_X           88 KANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLDIQD  137 (350)
T ss_dssp             EETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCTTCCB---SSCEEEEEES
T ss_pred             cCCcccccC--chhhhhccccccccccccccccCCchhhccc---chhhhhhhcc
Confidence            567777643  3556777777777777777766555444333   4455555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=5e-18  Score=167.94  Aligned_cols=153  Identities=24%  Similarity=0.241  Sum_probs=135.3

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      ..++++++.++......+.+++.|++++|++++..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            45666777666543334678999999999999988889999999999999999999988999999999999999999999


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      +..+..|..+++|                    ++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++
T Consensus        94 ~l~~~~f~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  153 (220)
T 2v9t_B           94 ELPKSLFEGLFSL--------------------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA  153 (220)
T ss_dssp             CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ccCHhHccCCCCC--------------------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence            6666667777766                    78999999999988999999999999999999999877788999999


Q ss_pred             CCeeeCcCceeee
Q 047152          661 LDFLDLSRNQFFG  673 (776)
Q Consensus       661 L~~L~Ls~N~l~~  673 (776)
                      |++|+|++|.+..
T Consensus       154 L~~L~L~~N~~~c  166 (220)
T 2v9t_B          154 IQTMHLAQNPFIC  166 (220)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             CCEEEeCCCCcCC
Confidence            9999999999975

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.3e-18  Score=186.22  Aligned_cols=179  Identities=27%  Similarity=0.233  Sum_probs=149.2

Q ss_pred             CcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152          521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY  599 (776)
Q Consensus       521 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  599 (776)
                      -+.+++++++++..+.. +  .+.++.|+|++|+|++..+..+. .+++|++|+|++|++++..|..|..+++|      
T Consensus        20 ~~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   90 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL------   90 (361)
T ss_dssp             TTEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CCEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC------
Confidence            46899999999875433 3  25689999999999988788787 89999999999999998888888877777      


Q ss_pred             CCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccC
Q 047152          600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL  679 (776)
Q Consensus       600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  679 (776)
                                    ++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+
T Consensus        91 --------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           91 --------------RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             --------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             --------------CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence                          789999999998888889999999999999999998889999999999999999999996555555


Q ss_pred             ---cCCCCCCeeeCCCCcceecCCCC--Ccccc--cccccccCCCCCCCCC
Q 047152          680 ---SQLSGLSVMDLSYNNLSGKIPLG--TQLQS--FNELVYAGNPELCGLP  723 (776)
Q Consensus       680 ---~~l~~L~~L~ls~N~l~g~iP~~--~~~~~--~~~~~~~gN~~lc~~~  723 (776)
                         ..+++|+.|++++|++++ +|..  ..+..  +..+.+.+||+.|+|.
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             C----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             cCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCCccCCcC
Confidence               578999999999999985 4421  12222  2567899999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.4e-18  Score=168.07  Aligned_cols=155  Identities=22%  Similarity=0.260  Sum_probs=124.0

Q ss_pred             cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCc-cccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152          546 IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN-SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG  624 (776)
Q Consensus       546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  624 (776)
                      +++++++|.++ .+|..+..  ++++|++++|++++..+. .++.+++|                    ++|+|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~   67 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL--------------------VKLELKRNQLT   67 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC--------------------CEEECCSSCCC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC--------------------CEEECCCCCCC
Confidence            57777777775 56665433  788888888888766654 36666666                    77899999999


Q ss_pred             cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCc
Q 047152          625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQ  704 (776)
Q Consensus       625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  704 (776)
                      +..|..|+++++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....
T Consensus        68 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence            88899999999999999999999988888899999999999999999999999999999999999999999998875332


Q ss_pred             ccccccccccCCCCCCCCC
Q 047152          705 LQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       705 ~~~~~~~~~~gN~~lc~~~  723 (776)
                      ...+....+.++...|+.|
T Consensus       148 ~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          148 AEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             HHHHHHHCCSGGGCBBCSS
T ss_pred             HHHHHHcCCCCCCCCCCCC
Confidence            2333444455665666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=8.6e-18  Score=173.98  Aligned_cols=174  Identities=25%  Similarity=0.320  Sum_probs=103.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +..+++|++|++++|.+..  ++ .+..+++|++|++++|++++..+  +.++++|++|++++|.+..   ++.+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTT
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCC
Confidence            3456677777777777763  33 36667777777777777765433  6677777777777776642   344666666


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++|++++|+++++    ..+..+++|++|++++|.+++.                             +.+..+++  |
T Consensus       114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~--L  158 (291)
T 1h6t_A          114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTK--L  158 (291)
T ss_dssp             CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTT--C
T ss_pred             CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCC--C
Confidence            66666666666553    2344555555555555555443                             23334444  5


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                      +.|++++|++++..+  +..+++|++|++++|.++++|. +..+++|+.|++++|.++..
T Consensus       159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             CEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence            555555555554333  5666666677777776666653 66667777777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=9.7e-18  Score=173.59  Aligned_cols=189  Identities=22%  Similarity=0.330  Sum_probs=128.5

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      ..+.+..+.+.+.   ..+..+++|++|++++|.+.. ++ .+..+++|++|++++|++.+  .++ +.++++|++|+++
T Consensus        27 ~~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~   98 (291)
T 1h6t_A           27 IKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECC
T ss_pred             HHHHhcCCCcccc---cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECC
Confidence            3344555555432   223456677777777776663 33 35666666666666666642  111 5555555555555


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                      +|.+++.+                            .+..+   ++|++|++++|++++.  +.+..+++  |+.|++++
T Consensus        99 ~n~l~~~~----------------------------~l~~l---~~L~~L~L~~n~i~~~--~~l~~l~~--L~~L~l~~  143 (291)
T 1h6t_A           99 ENKVKDLS----------------------------SLKDL---KKLKSLSLEHNGISDI--NGLVHLPQ--LESLYLGN  143 (291)
T ss_dssp             SSCCCCGG----------------------------GGTTC---TTCCEEECTTSCCCCC--GGGGGCTT--CCEEECCS
T ss_pred             CCcCCCCh----------------------------hhccC---CCCCEEECCCCcCCCC--hhhcCCCC--CCEEEccC
Confidence            55554421                            23333   5566666666665542  34556666  88888888


Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI  354 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l  354 (776)
                      |++++.  ..+..+++|++|++++|.+++++. +..+++|++|++++|.+++..  .+..++      +|+.|++++|.+
T Consensus       144 n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~------~L~~L~l~~n~i  212 (291)
T 1h6t_A          144 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLK------NLDVLELFSQEC  212 (291)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCT------TCSEEEEEEEEE
T ss_pred             CcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--hhccCC------CCCEEECcCCcc
Confidence            888875  678999999999999999999776 899999999999999998753  367776      999999999999


Q ss_pred             ccc
Q 047152          355 TGS  357 (776)
Q Consensus       355 ~~~  357 (776)
                      +..
T Consensus       213 ~~~  215 (291)
T 1h6t_A          213 LNK  215 (291)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.5e-17  Score=164.11  Aligned_cols=155  Identities=23%  Similarity=0.206  Sum_probs=135.5

Q ss_pred             CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152          501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF  580 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (776)
                      ..++++++.++......++++++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            56777777766544445789999999999999999999999999999999999998666677899999999999999999


Q ss_pred             ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152          581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS  660 (776)
Q Consensus       581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  660 (776)
                      +..+..|..+++|                    ++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++
T Consensus       102 ~l~~~~~~~l~~L--------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  160 (229)
T 3e6j_A          102 VLPSAVFDRLVHL--------------------KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS  160 (229)
T ss_dssp             CCCTTTTTTCTTC--------------------CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccChhHhCcchhh--------------------CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence            7777777777777                    78899999999 78999999999999999999999776778999999


Q ss_pred             CCeeeCcCceeeecCC
Q 047152          661 LDFLDLSRNQFFGGIP  676 (776)
Q Consensus       661 L~~L~Ls~N~l~~~~p  676 (776)
                      |+.|++++|.+....+
T Consensus       161 L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          161 LTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCEEECTTSCBCTTBG
T ss_pred             CCEEEeeCCCccCCcc
Confidence            9999999999986544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.2e-17  Score=187.37  Aligned_cols=129  Identities=24%  Similarity=0.314  Sum_probs=72.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +..+++|++|++++|.+..  +| .+..+++|++|+|++|++++..|  +..+++|++|+|++|.+..   ++.+..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---CTTSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC---ChhhccCCC
Confidence            4556666666776666653  33 45666666667666666664433  6666666666666666642   234556666


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN  253 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~  253 (776)
                      |++|+|++|.+.++    ..+..+++|+.|+|++|.+++.  ..+..+   ++|+.|+|++|.+.+
T Consensus       111 L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          111 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCC
T ss_pred             CCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCC
Confidence            66666666665553    2345555555555555555543  233333   444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.4e-17  Score=187.08  Aligned_cols=191  Identities=24%  Similarity=0.331  Sum_probs=125.1

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL  193 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L  193 (776)
                      +..+++..+.+.+.   ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+..  .+ .+..+++|++|+|
T Consensus        23 l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~--~~-~l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IK-PLTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC--CG-GGGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC--Ch-hhccCCCCCEEEC
Confidence            44455565555532   124556677777777777763 33 46677777777777777653  22 2677777777777


Q ss_pred             cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEcc
Q 047152          194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP  273 (776)
Q Consensus       194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~  273 (776)
                      ++|.+.+++    .+..+++|++|+|++|.+.+.  ..+..+   ++|+.|+|++|.+++.  +.+..+++  |+.|+|+
T Consensus        95 s~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~l--~~l~~l~~--L~~L~Ls  161 (605)
T 1m9s_A           95 DENKIKDLS----SLKDLKKLKSLSLEHNGISDI--NGLVHL---PQLESLYLGNNKITDI--TVLSRLTK--LDTLSLE  161 (605)
T ss_dssp             CSSCCCCCT----TSTTCTTCCEEECTTSCCCCC--GGGGGC---TTCSEEECCSSCCCCC--GGGGSCTT--CSEEECC
T ss_pred             cCCCCCCCh----hhccCCCCCEEEecCCCCCCC--ccccCC---CccCEEECCCCccCCc--hhhcccCC--CCEEECc
Confidence            777776632    466777777777777777653  335555   6777777777777654  45666666  7777777


Q ss_pred             CCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCcc
Q 047152          274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQL  328 (776)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~  328 (776)
                      +|.+.+..|  +..+++|+.|+|++|.++++| .+..+++|+.|+|++|.+.+..
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            777776555  677777777777777777764 4666777777777777766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.2e-20  Score=213.06  Aligned_cols=37  Identities=19%  Similarity=0.097  Sum_probs=22.2

Q ss_pred             cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCC
Q 047152          134 GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFN  171 (776)
Q Consensus       134 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  171 (776)
                      ..+++|+.|+|++|+++ .+|..++++++|++|++++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n  382 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK  382 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence            34556666666666665 55666666666666666444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.3e-19  Score=204.41  Aligned_cols=121  Identities=22%  Similarity=0.233  Sum_probs=80.4

Q ss_pred             ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152          545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG  624 (776)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  624 (776)
                      |+.|+|++|.+++ +|. +..+++|+.|+|++|+++ .+|..++.+++|                    +.|+|++|+++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------------~~L~Ls~N~l~  499 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL--------------------EVLQASDNALE  499 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC--------------------CEEECCSSCCC
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC--------------------CEEECCCCCCC
Confidence            5666666666664 454 666677777777777776 566666666555                    56677777777


Q ss_pred             cCCchhhhccccCCEEECcCCcccCcC-cccccCcCCCCeeeCcCceeeecCCcc---CcCCCCCCeeeC
Q 047152          625 GGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLDLSRNQFFGGIPSS---LSQLSGLSVMDL  690 (776)
Q Consensus       625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l  690 (776)
                      + +| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            4 55 6777777777777777777655 777777777777777777777554422   223567777754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.6e-17  Score=158.94  Aligned_cols=152  Identities=14%  Similarity=0.177  Sum_probs=127.1

Q ss_pred             CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      ++++++|++++|.++.. + .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..++.+++|    
T Consensus        43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----  114 (197)
T 4ezg_A           43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL----  114 (197)
T ss_dssp             HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC----
T ss_pred             cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC----
Confidence            46788999999988843 3 5777899999999999775  34578889999999999999988778878777776    


Q ss_pred             cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCc-ccCcCcccccCcCCCCeeeCcCceeeecCC
Q 047152          598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNN-LTGQITPKIGQLKSLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  676 (776)
                                      ++|++++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++
T Consensus       115 ----------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~  175 (197)
T 4ezg_A          115 ----------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR  175 (197)
T ss_dssp             ----------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred             ----------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH
Confidence                            788999999998889999999999999999998 65 566 68999999999999999986 44


Q ss_pred             ccCcCCCCCCeeeCCCCccee
Q 047152          677 SSLSQLSGLSVMDLSYNNLSG  697 (776)
Q Consensus       677 ~~l~~l~~L~~L~ls~N~l~g  697 (776)
                       .+..+++|++|++++|++.+
T Consensus       176 -~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -TGGGCSSCCEEEECBC----
T ss_pred             -HhccCCCCCEEEeeCcccCC
Confidence             68899999999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.6e-18  Score=200.10  Aligned_cols=240  Identities=21%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCC
Q 047152           36 CIDEEREALLTFKASLVDE-SGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHL  114 (776)
Q Consensus        36 ~~~~~~~~ll~~k~~~~~~-~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L  114 (776)
                      ..+.++++++++..+...+ ...-..|..  .....+.|.++.++  +++++.++|.+     +.+.. .+.     ..|
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~-----n~~~~-~~~-----~~l  193 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA-----NGKDE-ANQ-----ALL  193 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC-----CCCCc-chh-----hHh
Confidence            4566888999998776421 112335642  34456788888775  36788888876     33332 111     234


Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      +.++|+.|.+.+.               +++.|.+. ..|..+..+++|++|+|++|.+.                    
T Consensus       194 ~~l~Ls~~~i~~~---------------~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--------------------  237 (727)
T 4b8c_D          194 QHKKLSQYSIDED---------------DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--------------------  237 (727)
T ss_dssp             --------------------------------------------CCCCCCEEECTTSCCS--------------------
T ss_pred             hcCccCcccccCc---------------ccccccee-cChhhhccCCCCcEEECCCCCCC--------------------
Confidence            4455555544321               22333333 33444555555555555555443                    


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                           .   ++..+.++++|++|+|++|.++ .+|..++++   ++                          |+.|+|++
T Consensus       238 -----~---l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---~~--------------------------L~~L~Ls~  279 (727)
T 4b8c_D          238 -----N---ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL---SN--------------------------LRVLDLSH  279 (727)
T ss_dssp             -----C---CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG---TT--------------------------CCEEECTT
T ss_pred             -----C---CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC---CC--------------------------CCEEeCcC
Confidence                 1   1122223333333333333333 234444444   44                          45555555


Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI  354 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l  354 (776)
                      |+++ .+|..|+.+++|++|+|++|.++.+|..|+.+++|++|+|++|.+++.+|..+.....     .+..++|++|.+
T Consensus       280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----~~~~l~l~~N~l  353 (727)
T 4b8c_D          280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----TGLIFYLRDNRP  353 (727)
T ss_dssp             SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----HHHHHHHHHCCC
T ss_pred             CcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----hhhHHhhccCcc
Confidence            5555 4566666777777777777777777777777777777777777777777777655431     223466777777


Q ss_pred             cccCCCccCCCCCCEEeccCc
Q 047152          355 TGSMPNLGEFSSLKQLNLENN  375 (776)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~n  375 (776)
                      ++.+|.     .|+.|+++.|
T Consensus       354 ~~~~p~-----~l~~l~l~~n  369 (727)
T 4b8c_D          354 EIPLPH-----ERRFIEINTD  369 (727)
T ss_dssp             CCCCCC-----C---------
T ss_pred             cCcCcc-----ccceeEeecc
Confidence            766653     4556666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.4e-17  Score=158.29  Aligned_cols=175  Identities=21%  Similarity=0.180  Sum_probs=105.5

Q ss_pred             cEEEccCCccccCCCccccCCCCccEEECcCCcccccCCh-hhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCC
Q 047152          522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN  600 (776)
Q Consensus       522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  600 (776)
                      +++++++|+++.. |..+.  .++++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|       
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------   80 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-------   80 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence            3455555555332 22221  2566777777777655443 36677777777777777777667666666655       


Q ss_pred             CcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc-C
Q 047152          601 RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-L  679 (776)
Q Consensus       601 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l  679 (776)
                                   ++|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|.+.+..+-. +
T Consensus        81 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           81 -------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             -------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             -------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence                         56677777777766767777777888888888887777777777788888888888777655421 1


Q ss_pred             cCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          680 SQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       680 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      .  ..++...+..+...|..|..  +....-..+..+...|..+
T Consensus       148 ~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          148 A--EWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             H--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             H--HHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence            1  11222344455555555532  2233333444454455433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.7e-16  Score=154.23  Aligned_cols=154  Identities=18%  Similarity=0.233  Sum_probs=78.0

Q ss_pred             cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCC
Q 047152          134 GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHS  213 (776)
Q Consensus       134 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  213 (776)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+.   .++.+..+++|++|++++|.                
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~----------------   99 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKD----------------   99 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTT----------------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCc----------------
Confidence            45566677777766666 444 4666666666666666442   22344444444444444444                


Q ss_pred             CCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCE
Q 047152          214 LTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY  293 (776)
Q Consensus       214 L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  293 (776)
                                +++..+..+..+   ++|++|++++|++++..+..+..+++  |++|++++|.+.+.+| .+..+++|++
T Consensus       100 ----------l~~~~~~~l~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~--L~~L~L~~n~~i~~~~-~l~~l~~L~~  163 (197)
T 4ezg_A          100 ----------VTSDKIPNLSGL---TSLTLLDISHSAHDDSILTKINTLPK--VNSIDLSYNGAITDIM-PLKTLPELKS  163 (197)
T ss_dssp             ----------CBGGGSCCCTTC---TTCCEEECCSSBCBGGGHHHHTTCSS--CCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred             ----------cCcccChhhcCC---CCCCEEEecCCccCcHhHHHHhhCCC--CCEEEccCCCCccccH-hhcCCCCCCE
Confidence                      433333333333   44555555555554444444444444  4555555544222233 3555566666


Q ss_pred             EEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152          294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       294 L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      |++++|.+++++ .+..+++|++|++++|.+.
T Consensus       164 L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          164 LNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            666666665554 4555555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=154.40  Aligned_cols=131  Identities=25%  Similarity=0.286  Sum_probs=108.0

Q ss_pred             cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCcc
Q 047152          546 IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG  625 (776)
Q Consensus       546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~  625 (776)
                      +++++++|.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|                    ++|+|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------~~L~Ls~N~i~~   68 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------TLIDLSNNRIST   68 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------CEEECCSSCCCC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------CEEECCCCcCCE
Confidence            46777777776 5555442  57888888888887 566667666666                    678888888888


Q ss_pred             CCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152          626 GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP  700 (776)
Q Consensus       626 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  700 (776)
                      ..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.++
T Consensus        69 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            778889999999999999999998878889999999999999999997777789999999999999999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.8e-16  Score=161.32  Aligned_cols=148  Identities=22%  Similarity=0.269  Sum_probs=118.4

Q ss_pred             CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      +.+|++|++++|+++...  .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +|.. ..        
T Consensus        40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~--------  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS--------  105 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC--------
T ss_pred             cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc--------
Confidence            567888888888877543  56678888888888888885444  7888888888888888875 3321 11        


Q ss_pred             cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152          598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS  677 (776)
Q Consensus       598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  677 (776)
                                   ++|+.|++++|++++ ++ .++.+++|+.|++++|++++ ++ .++.+++|++|++++|++++.  .
T Consensus       106 -------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A          106 -------------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             -------------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             -------------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--H
Confidence                         345889999999985 44 68999999999999999985 44 688999999999999999976  6


Q ss_pred             cCcCCCCCCeeeCCCCcceec
Q 047152          678 SLSQLSGLSVMDLSYNNLSGK  698 (776)
Q Consensus       678 ~l~~l~~L~~L~ls~N~l~g~  698 (776)
                      .+..+++|+.|++++|++++.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECC
T ss_pred             HhccCCCCCEEeCCCCcccCC
Confidence            788999999999999999865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=8.4e-17  Score=163.80  Aligned_cols=124  Identities=21%  Similarity=0.310  Sum_probs=65.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152          111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY  190 (776)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  190 (776)
                      +..++.++++++.+++  ++ .+..+++|++|++++|+++ .+| .+..+++|++|++++|++.+  .++ +.++++|++
T Consensus        18 l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCE
Confidence            4445555666666553  33 3555666666666666665 344 45566666666666666542  122 555566666


Q ss_pred             EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCC
Q 047152          191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT  252 (776)
Q Consensus       191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~  252 (776)
                      |++++|++++++.    +.. ++|++|++++|++++.  ..+..+   ++|++|++++|+++
T Consensus        90 L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~--~~l~~l---~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           90 LSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDT--DSLIHL---KNLEILSIRNNKLK  141 (263)
T ss_dssp             EECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBS--GGGTTC---TTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCc----ccc-CcccEEEccCCccCCC--hhhcCc---ccccEEECCCCcCC
Confidence            6666665555322    111 5555555555555442  123333   45555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=4.7e-16  Score=146.86  Aligned_cols=132  Identities=27%  Similarity=0.245  Sum_probs=99.1

Q ss_pred             CCccEEECcCCccc-ccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152          543 NRLIYLDLSNNLLS-GKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN  621 (776)
Q Consensus       543 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N  621 (776)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|                    ++|++++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL--------------------KKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC--------------------CEEEEESC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC--------------------CEEECcCC
Confidence            56777777777776 66677777777788888888777654  445555554                    67788888


Q ss_pred             CCccCCchhhhccccCCEEECcCCcccCcC-cccccCcCCCCeeeCcCceeeecCC---ccCcCCCCCCeeeCCCCcce
Q 047152          622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLDLSRNQFFGGIP---SSLSQLSGLSVMDLSYNNLS  696 (776)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~  696 (776)
                      ++++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+.
T Consensus        82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            888777777777888888888888888532 2678888888888888888885554   47788888888888888876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=4.8e-16  Score=143.53  Aligned_cols=128  Identities=25%  Similarity=0.260  Sum_probs=95.2

Q ss_pred             CCccEEECcCCccc-ccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152          543 NRLIYLDLSNNLLS-GKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN  621 (776)
Q Consensus       543 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N  621 (776)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|                    ++|++++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------~~L~Ls~n   74 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------KKLELSDN   74 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC--------------------CEEECCSS
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC--------------------CEEECCCC
Confidence            56777777777776 66777777777778888877777654  445545444                    67788888


Q ss_pred             CCccCCchhhhccccCCEEECcCCcccCc-CcccccCcCCCCeeeCcCceeeecCC---ccCcCCCCCCeeeCCC
Q 047152          622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQ-ITPKIGQLKSLDFLDLSRNQFFGGIP---SSLSQLSGLSVMDLSY  692 (776)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  692 (776)
                      ++++.+|..++.+++|++|++++|++++. .+..++.+++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88876787777788888888888888753 34778888888888888888886655   4677788888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=2.1e-15  Score=143.69  Aligned_cols=134  Identities=21%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152          545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG  624 (776)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  624 (776)
                      .+.+++++|.++ .+|..+  .++|+.|++++|++++..+..+..+++|                    ++|++++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~   65 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL--------------------TKLSLSQNQIQ   65 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------SEEECCSSCCC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc--------------------cEEECCCCcce
Confidence            456777777776 445433  3578888888888876666566666665                    67888888888


Q ss_pred             cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      +..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus        66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            76667788999999999999999977777788999999999999999977666678899999999999999988774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=8.4e-17  Score=187.36  Aligned_cols=192  Identities=18%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             cccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152          474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN  553 (776)
Q Consensus       474 ~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N  553 (776)
                      ....+++..|.+... +.      ..+..++++.|.+.+           +++..|.+. ..+..+..++.|+.|+|++|
T Consensus       174 ~~~~l~L~~n~~~~~-~~------~~l~~l~Ls~~~i~~-----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n  234 (727)
T 4b8c_D          174 LTPKIELFANGKDEA-NQ------ALLQHKKLSQYSIDE-----------DDDIENRMV-MPKDSKYDDQLWHALDLSNL  234 (727)
T ss_dssp             -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred             ccceEEeeCCCCCcc-hh------hHhhcCccCcccccC-----------cccccccee-cChhhhccCCCCcEEECCCC
Confidence            456677777766542 21      112344455544432           122222222 22334444555555555555


Q ss_pred             cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc---ccccccccEEEccCCCCccCCchh
Q 047152          554 LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY---KSTLGLVKILDLSSNKLGGGVPKE  630 (776)
Q Consensus       554 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~  630 (776)
                      .+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|+++.+..+   +..+++|++|+|++|.|+ .+|..
T Consensus       235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            554 44444445555555555555555 4455555555553333333222111   122333366777777776 66666


Q ss_pred             hhccccCCEEECcCCcccCcCcccccCcCC-CCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          631 IMDLVGLVALNLSRNNLTGQITPKIGQLKS-LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       631 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                      |+.+++|++|+|++|++++.+|..+..+.. +..|+|++|.+++.+|..      |+.|++++|
T Consensus       312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            777777777777777777777766655422 223667777777776654      345556655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.2e-15  Score=144.14  Aligned_cols=138  Identities=27%  Similarity=0.241  Sum_probs=117.6

Q ss_pred             CCCCcEEEccCCccc-cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEE
Q 047152          518 PSNATSLNLSKNKFS-GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL  596 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  596 (776)
                      ++++++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|   
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            467999999999998 67777788899999999999999865  778899999999999999998788777667766   


Q ss_pred             ecCCCcccccccccccccEEEccCCCCccCC-chhhhccccCCEEECcCCcccCcCc---ccccCcCCCCeeeCcCceee
Q 047152          597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGV-PKEIMDLVGLVALNLSRNNLTGQIT---PKIGQLKSLDFLDLSRNQFF  672 (776)
Q Consensus       597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~  672 (776)
                                       ++|++++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+.
T Consensus        98 -----------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 -----------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             -----------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             -----------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence                             78899999998642 2789999999999999999996544   48899999999999999987


Q ss_pred             ecCCcc
Q 047152          673 GGIPSS  678 (776)
Q Consensus       673 ~~~p~~  678 (776)
                       .+|..
T Consensus       161 -~~~~~  165 (168)
T 2ell_A          161 -EAPDS  165 (168)
T ss_dssp             -BCCSS
T ss_pred             -hcccc
Confidence             55543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.2e-15  Score=139.13  Aligned_cols=129  Identities=23%  Similarity=0.230  Sum_probs=111.0

Q ss_pred             CCCCcEEEccCCccc-cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEE
Q 047152          518 PSNATSLNLSKNKFS-GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL  596 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  596 (776)
                      +++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|   
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL---   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence            467899999999998 67788888899999999999999866  778899999999999999998788777667666   


Q ss_pred             ecCCCcccccccccccccEEEccCCCCccC-CchhhhccccCCEEECcCCcccCcCc---ccccCcCCCCeeeCcC
Q 047152          597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGG-VPKEIMDLVGLVALNLSRNNLTGQIT---PKIGQLKSLDFLDLSR  668 (776)
Q Consensus       597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~  668 (776)
                                       ++|++++|++++. .+..++.+++|++|++++|++++..+   ..++.+++|+.||+++
T Consensus        91 -----------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 -----------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -----------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             -----------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence                             7889999999863 44889999999999999999997555   4789999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=138.45  Aligned_cols=129  Identities=20%  Similarity=0.234  Sum_probs=103.9

Q ss_pred             cEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152          522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR  601 (776)
Q Consensus       522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~  601 (776)
                      +.+++++|+++......   .++|++|++++|+++ .+|..|.++++|++|+|++|++++..+..|..+++|        
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L--------   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL--------   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--------
Confidence            45666666665433222   257888888888887 677888889999999999999988777778777776        


Q ss_pred             cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeec
Q 047152          602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG  674 (776)
Q Consensus       602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  674 (776)
                                  ++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus        81 ------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           81 ------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             ------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence                        6788999999988888899999999999999999966666788999999999999998743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4e-14  Score=134.79  Aligned_cols=114  Identities=24%  Similarity=0.207  Sum_probs=79.5

Q ss_pred             CCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCC
Q 047152          543 NRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNK  622 (776)
Q Consensus       543 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~  622 (776)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|                    ++|++++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~N~   87 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL--------------------TILYLHENK   87 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------CEEECCSSC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc--------------------CEEECCCCC
Confidence            456667777777665555556667777777777777765555555555555                    567777777


Q ss_pred             CccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC
Q 047152          623 LGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       623 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  676 (776)
                      +++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            776666667778888888888888875555556778888888888888876554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.7e-14  Score=152.22  Aligned_cols=102  Identities=12%  Similarity=0.019  Sum_probs=63.1

Q ss_pred             CCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCC-EEECcC
Q 047152          566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV-ALNLSR  644 (776)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~  644 (776)
                      +++|+.+++++|+++...+..|.++.+|                    +.+++++| ++...+..|.++++|+ .+++.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L--------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYL--------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTC--------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCC--------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            5566666666666654445555555555                    44555555 4444455666666676 677666


Q ss_pred             CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeee
Q 047152          645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMD  689 (776)
Q Consensus       645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  689 (776)
                       +++...+..|.++++|+.+++++|++....+..|.++++|+.++
T Consensus       284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             55544456666777777777777777666666677777776664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=5.3e-15  Score=156.08  Aligned_cols=283  Identities=15%  Similarity=0.093  Sum_probs=159.5

Q ss_pred             CCCCCEEecCCCCCCCCCCccCCC-CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcC----
Q 047152          136 LGKLSYLGLSSAEFAGPIPHQLGN-LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK----  210 (776)
Q Consensus       136 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~----  210 (776)
                      +.+++.|.++++ +.+.-...+.. +++|++|||++|++.....  .-+.++.++.+.+..|.+..     ..|.+    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I~~-----~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFVPA-----YAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEECT-----TTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC--ccccccccccccccccccCH-----HHhcccccc
Confidence            567888888764 21111112333 6778888888888751000  01112223444444443332     34555    


Q ss_pred             ----CCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCc----cccCcc
Q 047152          211 ----LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ----LQGSIP  282 (776)
Q Consensus       211 ----l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~----l~~~~p  282 (776)
                          +++|+++++.. .++.+.+..|.++   ++|+.++++.|.+....+..|.++.+  +..+....+.    ......
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~---~~L~~l~l~~n~i~~i~~~aF~~~~~--l~~l~~~~~~~~~~~~~i~~  169 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGC---DNLKICQIRKKTAPNLLPEALADSVT--AIFIPLGSSDAYRFKNRWEH  169 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTC---TTCCEEEBCCSSCCEECTTSSCTTTC--EEEECTTCTHHHHTSTTTTT
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcC---cccceEEcCCCCccccchhhhcCCCc--eEEecCcchhhhhccccccc
Confidence                77777777777 6666666666666   67777777777665444444444433  4444443321    111222


Q ss_pred             hhhcCCCCCC-EEEccCCCCCCCchhhc----ccCCCcEEeccCCcCCCccchHHh-hccCCCcCCCccEEEcccccccc
Q 047152          283 EAFGRMVSLR-YLDLSSNELRGIPKFLG----NMCGLKILYLSGKELKGQLSEFIQ-DLSSGCTKNSLEWLHLSSNEITG  356 (776)
Q Consensus       283 ~~l~~l~~L~-~L~L~~n~l~~ip~~l~----~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~~~~~L~~L~L~~n~l~~  356 (776)
                      .+|.++..|+ .+.+...  ..++..+.    ...+++.+.+.++-.. .....+. .++      +|+.++|++|+++.
T Consensus       170 ~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~------~L~~l~L~~n~i~~  240 (329)
T 3sb4_A          170 FAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMP------NLVSLDISKTNATT  240 (329)
T ss_dssp             SCEEESCCCEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCT------TCCEEECTTBCCCE
T ss_pred             cccccccccceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcC------CCeEEECCCCCcce
Confidence            3344555555 3433321  12222211    2345555555544221 1111122 233      78888888877775


Q ss_pred             cCCC-ccCCCCCCEEeccCccccccchhcccCCCCCc-EEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCC
Q 047152          357 SMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE-MLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDW  434 (776)
Q Consensus       357 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  434 (776)
                      ..+. |..+++|+.+++.+| ++...+..|.++++|+ .+++.+ .++ .++...|.++++|+.++++.|.++...+..|
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF  317 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELF  317 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence            5544 777788888888776 6655566777788887 888877 553 4444467788888888887777777777777


Q ss_pred             CCCCCCcEEE
Q 047152          435 IPPFQLNTIS  444 (776)
Q Consensus       435 ~~~~~L~~L~  444 (776)
                      ..+.+|+.++
T Consensus       318 ~~~~~L~~ly  327 (329)
T 3sb4_A          318 GNGVPSKLIY  327 (329)
T ss_dssp             CTTCCCCEEE
T ss_pred             cCCcchhhhc
Confidence            7777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.5e-14  Score=136.02  Aligned_cols=134  Identities=19%  Similarity=0.221  Sum_probs=96.8

Q ss_pred             ccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEc
Q 047152          539 CSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDL  618 (776)
Q Consensus       539 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~L  618 (776)
                      +..+++|++|++++|+++. +|......++|++|++++|.+++.  ..+..+++|                    ++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L--------------------~~L~L   71 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRL--------------------KTLLV   71 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSC--------------------CEEEC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCC--------------------CEEEC
Confidence            3346677788888887773 444333334788888888887754  345555444                    67888


Q ss_pred             cCCCCccCCchhhhccccCCEEECcCCcccCcCcc--cccCcCCCCeeeCcCceeeecCCcc----CcCCCCCCeeeCCC
Q 047152          619 SSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP--KIGQLKSLDFLDLSRNQFFGGIPSS----LSQLSGLSVMDLSY  692 (776)
Q Consensus       619 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~  692 (776)
                      ++|++++..+..++.+++|++|++++|+++ .+|.  .++.+++|+.|++++|++. .+|..    +..+++|++||+++
T Consensus        72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           72 NNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             CCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence            888888654455588888888888888886 4665  7888888888888888887 45654    77888888888888


Q ss_pred             Cccee
Q 047152          693 NNLSG  697 (776)
Q Consensus       693 N~l~g  697 (776)
                      |....
T Consensus       150 n~~~~  154 (176)
T 1a9n_A          150 VKLKE  154 (176)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            87764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=4.1e-16  Score=151.60  Aligned_cols=83  Identities=24%  Similarity=0.197  Sum_probs=36.6

Q ss_pred             EEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC-ccCcCCCCCCeeeCCCC
Q 047152          615 ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP-SSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       615 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N  693 (776)
                      +|++++|+++ .+|..+..+++|++|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus        74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            3444444444 344444444444444444444443 22 34444444444444444443211 23444444444444444


Q ss_pred             cceecCC
Q 047152          694 NLSGKIP  700 (776)
Q Consensus       694 ~l~g~iP  700 (776)
                      ++++.+|
T Consensus       151 ~l~~~~~  157 (198)
T 1ds9_A          151 PLYNDYK  157 (198)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            4444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=9.9e-14  Score=130.83  Aligned_cols=111  Identities=20%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             CcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCccc
Q 047152          569 LVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT  648 (776)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  648 (776)
                      .+.+++++|.++ .+|..+.  ++                    +++|+|++|+|++..|..|+++++|++|+|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~--------------------l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   67 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TT--------------------TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT   67 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TT--------------------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CC--------------------CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence            457777777776 3554432  33                    378899999999888889999999999999999999


Q ss_pred             CcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152          649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG  702 (776)
Q Consensus       649 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (776)
                      +..+..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|.++..
T Consensus        68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            777777899999999999999999877778999999999999999999887643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.1e-14  Score=133.31  Aligned_cols=131  Identities=20%  Similarity=0.166  Sum_probs=108.3

Q ss_pred             CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152          518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS  597 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  597 (776)
                      +.++++|++++|+++.. +......++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|    
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----   90 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL----   90 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC----
T ss_pred             cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC----
Confidence            46788999999998854 54444455999999999999965  678899999999999999986655555667666    


Q ss_pred             cCCCcccccccccccccEEEccCCCCccCCch--hhhccccCCEEECcCCcccCcCccc----ccCcCCCCeeeCcCcee
Q 047152          598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK--EIMDLVGLVALNLSRNNLTGQITPK----IGQLKSLDFLDLSRNQF  671 (776)
Q Consensus       598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l  671 (776)
                                      ++|++++|+++ .+|.  .++.+++|+.|++++|.++ .+|..    ++.+++|+.||+++|.+
T Consensus        91 ----------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 ----------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ----------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ----------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence                            78899999996 5666  8899999999999999998 56764    88999999999999987


Q ss_pred             ee
Q 047152          672 FG  673 (776)
Q Consensus       672 ~~  673 (776)
                      ..
T Consensus       153 ~~  154 (176)
T 1a9n_A          153 KE  154 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=2.9e-13  Score=128.02  Aligned_cols=109  Identities=23%  Similarity=0.229  Sum_probs=89.6

Q ss_pred             cEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccC
Q 047152          570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG  649 (776)
Q Consensus       570 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  649 (776)
                      +.+++++|.+. .+|..+.  ++                    |++|+|++|++++..|..|+++++|++|+|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~--------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TD--------------------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TT--------------------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CC--------------------CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence            56777777775 5565442  33                    3778899999998888899999999999999999997


Q ss_pred             cCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152          650 QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       650 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      ..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+.++.
T Consensus        72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            5556678999999999999999977666799999999999999999987653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=3.6e-15  Score=144.84  Aligned_cols=150  Identities=27%  Similarity=0.354  Sum_probs=97.8

Q ss_pred             cCEEEccCCccccCcch------hhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCc
Q 047152          267 VDRISLPSNQLQGSIPE------AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT  340 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~  340 (776)
                      ++.++++.+.+.+.+|.      .+..+++|++|++++|.++++| .+..+++|++|++++|.++ .+|..+..++    
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~----   93 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVAD----   93 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH----
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCC----
Confidence            44444444444444443      6667777777777777777766 6667777777777777776 3455555555    


Q ss_pred             CCCccEEEcccccccccCCCccCCCCCCEEeccCccccccch-hcccCCCCCcEEECCCccccccccH---------Hhh
Q 047152          341 KNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIH-KSIGQLFKLEMLKLNGNSLGGVISE---------ALF  410 (776)
Q Consensus       341 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~---------~~~  410 (776)
                        +|++|++++|++++ +|.+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|.         ..+
T Consensus        94 --~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           94 --TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             --HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             --cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence              67777777777775 3456667777777777777775332 4567777778888887777655432         236


Q ss_pred             hCCCCCcEEECCCCccc
Q 047152          411 SNLSRLAALDLADNSLT  427 (776)
Q Consensus       411 ~~l~~L~~L~Ls~n~l~  427 (776)
                      ..+++|+.||  ++.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6778888776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=8.3e-13  Score=124.44  Aligned_cols=108  Identities=25%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152          613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY  692 (776)
Q Consensus       613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  692 (776)
                      .+.+++++|+++ .+|..+.  +.|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            478999999999 5787664  8899999999999988899999999999999999999988888889999999999999


Q ss_pred             CcceecCCC-CCcccccccccccCCCCCCCCC
Q 047152          693 NNLSGKIPL-GTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       693 N~l~g~iP~-~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      |++++..|. ...+..+..+.+.+||+.|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999976654 3567788899999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=1.7e-12  Score=122.71  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=94.9

Q ss_pred             cEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|+.+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            68999999997 7887765  89999999999999888999999999999999999999877777899999999999999


Q ss_pred             cceecCCC-CCcccccccccccCCCCCCCCC
Q 047152          694 NLSGKIPL-GTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       694 ~l~g~iP~-~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      ++++..|. ...+..+..+.+.+|++-|.++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99975553 3567788889999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=6.8e-11  Score=127.32  Aligned_cols=65  Identities=6%  Similarity=0.007  Sum_probs=31.7

Q ss_pred             chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCc
Q 047152          628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNN  694 (776)
Q Consensus       628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~  694 (776)
                      ...|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            334445555555555333 333334445555 555555555555544444455542 45555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=3.8e-11  Score=129.28  Aligned_cols=271  Identities=13%  Similarity=0.118  Sum_probs=146.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      .+..++.+.+..+ ++.+ -...|.++ +|+.+++..+ ++..-..+|.++ +|+.+++.. .+.. .....|.++++|+
T Consensus       111 ~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCC
Confidence            3466777777643 4432 23456654 6888888765 554444566664 688888875 3432 3345677788888


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR  269 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~  269 (776)
                      .++++.|.++.++.  ..|. +++|+.+.+..+ +..+....|.++   ++|+.+++..+ ++......|.+ .+  |+.
T Consensus       184 ~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~---~~L~~l~l~~~-l~~I~~~aF~~-~~--L~~  252 (401)
T 4fdw_A          184 KADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGSQAFLKT---SQLKTIEIPEN-VSTIGQEAFRE-SG--ITT  252 (401)
T ss_dssp             EEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECTTTTTTC---TTCCCEECCTT-CCEECTTTTTT-CC--CSE
T ss_pred             eeecCCCcceEech--hhEe-ecccCEEEeCCc-hheehhhHhhCC---CCCCEEecCCC-ccCcccccccc-CC--ccE
Confidence            88887777776532  2333 567777777633 555555666666   66777777653 32222222333 33  566


Q ss_pred             EEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152          270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL  349 (776)
Q Consensus       270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L  349 (776)
                      +.+ .+.++.....+|.++++|+.+++.+|.+..-                  .........|..+.      +|+.+++
T Consensus       253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~------------------~~~~I~~~aF~~c~------~L~~l~l  307 (401)
T 4fdw_A          253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDD------------------PEAMIHPYCLEGCP------KLARFEI  307 (401)
T ss_dssp             EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCC------------------TTCEECTTTTTTCT------TCCEECC
T ss_pred             EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCC------------------cccEECHHHhhCCc------cCCeEEe
Confidence            655 2334444445566666666666655544310                  00012223333333      4555555


Q ss_pred             ccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCC-CCcEEECCCCccc
Q 047152          350 SSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLS-RLAALDLADNSLT  427 (776)
Q Consensus       350 ~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~  427 (776)
                      .+ .++..... |.++++|+.+++..+ ++.....+|.++ +|+.+++.+|.+.... ...|.+++ .++.+.+..+.+.
T Consensus       308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~-~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF-EKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC-CSSCCCSCTTCCEEEECGGGHH
T ss_pred             CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc-cccccCCCCCccEEEeCHHHHH
Confidence            42 23322222 555666666666443 443445556666 6666666666654322 22455553 5666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=6.1e-12  Score=133.69  Aligned_cols=86  Identities=21%  Similarity=0.096  Sum_probs=52.2

Q ss_pred             cEEEccC-CCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152          614 KILDLSS-NKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY  692 (776)
Q Consensus       614 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  692 (776)
                      +.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            4555654 666655555666666666666666666665566666666666666666666654444444444 66666666


Q ss_pred             CcceecCC
Q 047152          693 NNLSGKIP  700 (776)
Q Consensus       693 N~l~g~iP  700 (776)
                      |++.+.++
T Consensus       113 N~~~c~c~  120 (347)
T 2ifg_A          113 NPLHCSCA  120 (347)
T ss_dssp             SCCCCCGG
T ss_pred             CCccCCCc
Confidence            66665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.4e-11  Score=130.82  Aligned_cols=108  Identities=22%  Similarity=0.236  Sum_probs=94.9

Q ss_pred             cEEEccCC-CCccCCchhhhccccCCEEECcC-CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152          614 KILDLSSN-KLGGGVPKEIMDLVGLVALNLSR-NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS  691 (776)
Q Consensus       614 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  691 (776)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 898 5888 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             CCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152          692 YNNLSGKIPLGTQLQSFNELVYAGNPELCGLP  723 (776)
Q Consensus       692 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  723 (776)
                      +|+|++..|.......+..+.+.+|++-|+|.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99999755543333348888999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=3e-12  Score=136.58  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=24.5

Q ss_pred             hhcCCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCccchHHh
Q 047152          284 AFGRMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQLSEFIQ  333 (776)
Q Consensus       284 ~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  333 (776)
                      .+...++|++|+|++|.+++     ++..+...++|++|++++|.+++.....+.
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            34444555555555555543     223334445555555555555544444333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.19  E-value=3.5e-10  Score=122.24  Aligned_cols=310  Identities=11%  Similarity=0.061  Sum_probs=151.5

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152          105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH  184 (776)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~  184 (776)
                      ..+|.++++|+.+.+..+ ++.+ -..+|.++++|+.+++.++ ++......|.++.+|+.+.+..+- .. .....|.+
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~-i~~~aF~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KS-IGVEAFKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CE-ECTTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-ee-ecceeeec
Confidence            356788888888888643 5532 3456888888888888754 443344567788888877765442 11 22234455


Q ss_pred             CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152          185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS  264 (776)
Q Consensus       185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  264 (776)
                      +..++..........+    ...|.++++|+.+.+..+ +.......|.++   .+|+.+++..+ +.......+.++..
T Consensus       139 ~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c---~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          139 CDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFSGC---GKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             CCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTTTC---TTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccCccccccc----hhhhcccCCCcEEecCCc-cceeccccccCC---CCceEEEcCCC-ceEeCchhhccccc
Confidence            5443333322221111    234666777777776543 222333444444   55555555443 22122223334444


Q ss_pred             CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCC
Q 047152          265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS  343 (776)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~  343 (776)
                        |+.+.+..+...  +........+|+.+.+... ++.+ ...+..+..++.+.+..+... .....+....      .
T Consensus       210 --L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~------~  277 (394)
T 4fs7_A          210 --LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS------G  277 (394)
T ss_dssp             --CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT------T
T ss_pred             --cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccc------c
Confidence              444444433221  1222333445555555432 2222 123445555555555444221 2222233333      4


Q ss_pred             ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCC
Q 047152          344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD  423 (776)
Q Consensus       344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  423 (776)
                      ++.+....+.+.  ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++ .+....|.++.+|+.+++..
T Consensus       278 l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          278 LKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             CCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred             cceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc
Confidence            555544443221  011455556666665443 33333445555666666666433 32 33333556666666666654


Q ss_pred             CccceecCCCCCCCCCCcEEEcc
Q 047152          424 NSLTLEFSHDWIPPFQLNTISLG  446 (776)
Q Consensus       424 n~l~~~~~~~~~~~~~L~~L~l~  446 (776)
                      + ++......|..+.+|+.+++.
T Consensus       353 ~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          353 S-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             T-CCEECTTTBTTCTTCCEEEEE
T ss_pred             c-ccEehHHHhhCCCCCCEEEEC
Confidence            4 444444555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.19  E-value=8.7e-10  Score=119.10  Aligned_cols=127  Identities=10%  Similarity=0.009  Sum_probs=63.3

Q ss_pred             cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEE
Q 047152          538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILD  617 (776)
Q Consensus       538 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~  617 (776)
                      .+..+..++.+.+..+... .....|..+..++.+....+.+.   ...|..+.+|+                    .+.
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~--------------------~i~  303 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLT--------------------EVK  303 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCC--------------------EEE
T ss_pred             cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccc--------------------ccc
Confidence            3444555555555554332 33444555555655555444321   22344444443                    333


Q ss_pred             ccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152          618 LSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS  691 (776)
Q Consensus       618 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  691 (776)
                      +..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|+.+++..| +...-...|.++++|+.+++.
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            3322 33233445555666666666433 44333455556666666666555 444444556666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=5.9e-12  Score=134.29  Aligned_cols=38  Identities=24%  Similarity=0.193  Sum_probs=18.4

Q ss_pred             CCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152          288 MVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       288 l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      .++|++|+|++|.+++     ++..+..+++|++|+|++|.++
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            3455555555555543     2233344455555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.94  E-value=1.5e-07  Score=101.42  Aligned_cols=135  Identities=9%  Similarity=0.101  Sum_probs=77.0

Q ss_pred             CCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccc
Q 047152          534 SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLV  613 (776)
Q Consensus       534 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L  613 (776)
                      ....+|..+..|+.+.+.++..+ .-..+|.+++.|+.+.+. +.+.......|.++.+|+                   
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~-------------------  314 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK-------------------  314 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC-------------------
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcC-------------------
Confidence            33456677777888877655443 445667777788887775 334444455666666664                   


Q ss_pred             cEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                       .+++..+ ++..-..+|.++++|+.+.+..+ ++..-...|.++++|+.+++.++....   ..+...+.|+.+.+..|
T Consensus       315 -~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          315 -SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             -EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             -EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence             4444432 44344556777777777777544 553445667777777777777765432   34555667777766655


Q ss_pred             cc
Q 047152          694 NL  695 (776)
Q Consensus       694 ~l  695 (776)
                      .+
T Consensus       389 ~~  390 (394)
T 4gt6_A          389 SI  390 (394)
T ss_dssp             --
T ss_pred             CE
Confidence            43

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=8.2e-10  Score=116.61  Aligned_cols=109  Identities=16%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             CCcEEEEECCCCCCCCCCC---ceeccccccCCCCCCEEeCCCCCCCC--------CCCCccccCCCCCCEEecCCCCCC
Q 047152           82 TGHVNKLDLQPIGFDSFPL---RGKITPALLKLQHLTYLDLSRNNFSG--------SSIPEFLGSLGKLSYLGLSSAEFA  150 (776)
Q Consensus        82 ~~~v~~L~L~~~~~~~~~l---~g~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~p~~~~~l~~L~~L~Ls~n~l~  150 (776)
                      ..+|++|.+..++.+....   ...+..++.++++|+.|.+.......        ..++..+..+++|+.|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3478888888743111000   00123456678899999887654321        014455567788888888776311


Q ss_pred             CCCCccCCCCCCCCEEeccCCCCCCCCCchhhc--cCCCCcEEEcc
Q 047152          151 GPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS--HLSSLIYLYLD  194 (776)
Q Consensus       151 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~--~l~~L~~L~Ls  194 (776)
                       .++. +. +++|++|++..+.+.. .....+.  .+++|++|+|+
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEE
T ss_pred             -eecc-cc-CCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEe
Confidence             2232 33 6777888777766532 2222332  56777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.83  E-value=6.2e-08  Score=104.48  Aligned_cols=314  Identities=12%  Similarity=0.094  Sum_probs=170.3

Q ss_pred             ccccCCC-CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC---CCCCCCccCCCCCCCCEEeccCCCCCCCCCchh
Q 047152          106 PALLKLQ-HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE---FAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDW  181 (776)
Q Consensus       106 ~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  181 (776)
                      .+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..|.   ++..-..+|.++.+|+.+.+..+ +.. .....
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~-I~~~a  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE-IDSEA  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE-ECTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce-ehhhh
Confidence            4566664 4788887654 4433 34567788888888887653   44333456777788887776544 221 33346


Q ss_pred             hccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhh
Q 047152          182 LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN  261 (776)
Q Consensus       182 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  261 (776)
                      |..+.+|+.+.+..+ +..+.  ...+..+.+|+.+.+..+ +..+....|..    ..|+.+.+..+- .......+.+
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~--~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~----~~l~~i~ip~~~-~~i~~~af~~  203 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVA--DGMFSYCYSLHTVTLPDS-VTAIEERAFTG----TALTQIHIPAKV-TRIGTNAFSE  203 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEECCTT-CCEECTTTTTT----CCCSEEEECTTC-CEECTTTTTT
T ss_pred             hhhhcccccccccce-eeeec--ccceecccccccccccce-eeEeccccccc----cceeEEEECCcc-cccccchhhh
Confidence            777788888887643 22221  245677777887777654 33222333322    456666665432 1112223333


Q ss_pred             cCCCCcCEEEccCCccccCcchh-------------hcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCc
Q 047152          262 VSSSLVDRISLPSNQLQGSIPEA-------------FGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       262 ~~~~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                      +..  ++................             +.....+..+.+.. .++.+ ...|.++..|+.+.+..+.. ..
T Consensus       204 c~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I  279 (394)
T 4gt6_A          204 CFA--LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SI  279 (394)
T ss_dssp             CTT--CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred             ccc--cceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-ee
Confidence            444  444443333222110000             11112223333221 11111 23466677777777765432 23


Q ss_pred             cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccccc
Q 047152          328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS  406 (776)
Q Consensus       328 ~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  406 (776)
                      ....|.+..      .|+.+.+.. .++..... |.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++ .+.
T Consensus       280 ~~~aF~~c~------~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~  349 (394)
T 4gt6_A          280 GTGAFMNCP------ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP  349 (394)
T ss_dssp             CTTTTTTCT------TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred             cCccccccc------ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence            334455544      788888753 34433333 778888888888754 55445667888888888888655 43 455


Q ss_pred             HHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcC
Q 047152          407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCK  449 (776)
Q Consensus       407 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  449 (776)
                      ...|.+|++|+.+++.++....   ..+.....|+.+.+..+.
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            5578888889888888876542   245566677777665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=7.5e-08  Score=101.58  Aligned_cols=139  Identities=22%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             cchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHh--hccCCCcCCCccEEEccc--ccccc
Q 047152          281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQ--DLSSGCTKNSLEWLHLSS--NEITG  356 (776)
Q Consensus       281 ~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~~~~~~~L~~L~L~~--n~l~~  356 (776)
                      +...+..+++|+.|++++|.-..++. + .+++|++|++..+.+.......+.  .++      +|++|+|+.  |...+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~  235 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF  235 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence            44556667777777777662122333 3 267777777777776554444443  344      777777753  22111


Q ss_pred             c--C----CCc--cCCCCCCEEeccCccccccchhccc---CCCCCcEEECCCccccccccHH---hhhCCCCCcEEECC
Q 047152          357 S--M----PNL--GEFSSLKQLNLENNLLNGTIHKSIG---QLFKLEMLKLNGNSLGGVISEA---LFSNLSRLAALDLA  422 (776)
Q Consensus       357 ~--~----~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls  422 (776)
                      .  +    +.+  ..+++|++|++++|.+.+..+..+.   .+++|++|+|+.|.+.+.....   .+.++++|+.|+++
T Consensus       236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence            1  0    111  3467788888877777654433332   4667788888777776532221   12345777777777


Q ss_pred             CCccc
Q 047152          423 DNSLT  427 (776)
Q Consensus       423 ~n~l~  427 (776)
                      +|.++
T Consensus       316 ~n~i~  320 (362)
T 2ra8_A          316 YNYLS  320 (362)
T ss_dssp             SBBCC
T ss_pred             CCcCC
Confidence            77665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.47  E-value=2.2e-05  Score=83.82  Aligned_cols=50  Identities=10%  Similarity=0.149  Sum_probs=26.3

Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch-hhcccCCCcEEec
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYL  319 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~-~l~~l~~L~~L~L  319 (776)
                      ++.+.+.. .++.+-..+|.+|.+|+.+++..+ ++.|+. .|.++ +|+.+.+
T Consensus        48 i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~   98 (379)
T 4h09_A           48 ISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTG   98 (379)
T ss_dssp             CSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEE
T ss_pred             CEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEEC
Confidence            56665543 344344556777777777777543 444432 33333 4444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.45  E-value=1.1e-05  Score=86.33  Aligned_cols=143  Identities=16%  Similarity=0.164  Sum_probs=81.4

Q ss_pred             chhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC
Q 047152          282 PEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN  360 (776)
Q Consensus       282 p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~  360 (776)
                      ...+..+.+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++......+....      +|+.+.+..+ ++.....
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~------~l~~i~l~~~-i~~i~~~  280 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT------ALKTLNFYAK-VKTVPYL  280 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT------TCCEEEECCC-CSEECTT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee------hhcccccccc-ceecccc
Confidence            344556666776666543 3332 234556666777666544 3333344444444      6677766543 3222222


Q ss_pred             -ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCC
Q 047152          361 -LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIP  436 (776)
Q Consensus       361 -l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  436 (776)
                       |..+++|+.+.+.++.++......|.++.+|+.+.+..+ ++ .+....|.++++|+.+.+..+ ++.....+|..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence             667777777777776666555566777777777777654 32 344446777777777777544 44344444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=2e-07  Score=88.55  Aligned_cols=46  Identities=11%  Similarity=0.048  Sum_probs=28.1

Q ss_pred             chhhcCCCCCCEEEccCC-CCCC-----CchhhcccCCCcEEeccCCcCCCc
Q 047152          282 PEAFGRMVSLRYLDLSSN-ELRG-----IPKFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       282 p~~l~~l~~L~~L~L~~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                      ...+...++|++|+|++| .+..     +...+...++|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~   80 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP   80 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH
Confidence            344556667777777776 6654     334455556667777777666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=2.4e-07  Score=87.98  Aligned_cols=59  Identities=24%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             cCEEEccCCccccC----cchhhcCCCCCCEEEc--cCCCCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152          267 VDRISLPSNQLQGS----IPEAFGRMVSLRYLDL--SSNELRG-----IPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       267 L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L--~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      |++|+|++|.+...    +...+...++|++|+|  ++|.+..     +...+...++|++|++++|.+.
T Consensus        95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44444444444332    2334445555666666  5555554     2333444455555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=3.8e-07  Score=91.11  Aligned_cols=66  Identities=26%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             ccccCCEEECcCCcccC--cCcccccCcCCCCeeeCcCceeeecCCccCcCCC--CCCeeeCCCCcceecCC
Q 047152          633 DLVGLVALNLSRNNLTG--QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS--GLSVMDLSYNNLSGKIP  700 (776)
Q Consensus       633 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP  700 (776)
                      +++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|++|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            44555555555555554  2334444555555555555555543  2222222  56666666666665555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=2e-07  Score=93.18  Aligned_cols=74  Identities=26%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             cEEEccCCCCcc--CCchhhhccccCCEEECcCCcccCcCcccccCcC--CCCeeeCcCceeeecCCc-------cCcCC
Q 047152          614 KILDLSSNKLGG--GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK--SLDFLDLSRNQFFGGIPS-------SLSQL  682 (776)
Q Consensus       614 ~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~l~~l  682 (776)
                      +.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+.+.+|.       .+..+
T Consensus       173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~  250 (267)
T 3rw6_A          173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF  250 (267)
T ss_dssp             CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred             CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence            445555555554  3344455555566666666665532  2233333  566666666666554442       24455


Q ss_pred             CCCCeee
Q 047152          683 SGLSVMD  689 (776)
Q Consensus       683 ~~L~~L~  689 (776)
                      ++|+.||
T Consensus       251 P~L~~LD  257 (267)
T 3rw6_A          251 PKLLRLD  257 (267)
T ss_dssp             TTCCEES
T ss_pred             cccCeEC
Confidence            6666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=3.3e-06  Score=78.02  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             CCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccC----CCCcEEEccCCC-CCCcchhhHhhcCCC
Q 047152          138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHL----SSLIYLYLDLND-LSNFSNWVQLLSKLH  212 (776)
Q Consensus       138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l~  212 (776)
                      +|++||+++|.++..--..+..+++|++|+|++|...++.....++.+    ++|++|++++|. +++  .-...+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence            455555555555444334445555555555555542111223334332    245555555543 433  1223445555


Q ss_pred             CCCEEEccCCC
Q 047152          213 SLTTLSLYSCD  223 (776)
Q Consensus       213 ~L~~L~L~~n~  223 (776)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=1.7e-05  Score=73.22  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=61.1

Q ss_pred             CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCC-CCCcchhhHhhcCC----CCCCEEEccCCC-CCCCCchhhh
Q 047152          160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND-LSNFSNWVQLLSKL----HSLTTLSLYSCD-LPPIIPSSLL  233 (776)
Q Consensus       160 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~  233 (776)
                      -.+|++||++++.++. .....+.++++|++|+|++|. +++  .-...++.+    ++|++|+|++|. ++..--..+.
T Consensus        60 ~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             CceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            3579999999999765 555677889999999999985 555  233445554    478888888885 5554444455


Q ss_pred             cCCCCCCccEEEcCCCC
Q 047152          234 NLNSSNSLEVIDLTENN  250 (776)
Q Consensus       234 ~l~~~~~L~~L~Ls~n~  250 (776)
                      .+   ++|++|+++++.
T Consensus       137 ~~---~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HF---RNLKYLFLSDLP  150 (176)
T ss_dssp             GC---TTCCEEEEESCT
T ss_pred             cC---CCCCEEECCCCC
Confidence            55   788888888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.17  E-value=0.00041  Score=65.28  Aligned_cols=40  Identities=8%  Similarity=0.105  Sum_probs=18.6

Q ss_pred             cCCCCCCEEEccCC-CCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152          286 GRMVSLRYLDLSSN-ELRG-----IPKFLGNMCGLKILYLSGKELK  325 (776)
Q Consensus       286 ~~l~~L~~L~L~~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~  325 (776)
                      .+-+.|++|+|++| .+..     +-+.+..-+.|+.|+|++|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            33445555555543 4432     2233444445555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00053  Score=64.51  Aligned_cols=41  Identities=10%  Similarity=0.097  Sum_probs=17.8

Q ss_pred             cCCCCcEEEccCC-CCCCc--chhhHhhcCCCCCCEEEccCCCC
Q 047152          184 HLSSLIYLYLDLN-DLSNF--SNWVQLLSKLHSLTTLSLYSCDL  224 (776)
Q Consensus       184 ~l~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l  224 (776)
                      +-+.|++|+|++| .+...  ..+.+.+..-+.|++|+|++|++
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i   82 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI   82 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence            3445555555553 44321  22333444444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.04  E-value=0.00075  Score=59.29  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             CEEECcCCccc-CcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152          638 VALNLSRNNLT-GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP  700 (776)
Q Consensus       638 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  700 (776)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|++.+.+-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36677777775 24554432  467888888888886666777888889999999999987643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.30  E-value=0.0069  Score=53.03  Aligned_cols=56  Identities=20%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             CeEeccCCccc-ccCCC-CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccc
Q 047152          501 PGIDISSNHFE-GPIPP-LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS  556 (776)
Q Consensus       501 ~~l~l~~n~l~-g~~p~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  556 (776)
                      ..++.+++.++ ..+|. .+.++++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            45566666665 23443 3445666666666666666666666666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	776
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 93.5 bits (231), Expect = 5e-21
 Identities = 60/366 (16%), Positives = 112/366 (30%), Gaps = 16/366 (4%)

Query: 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406
             L    +T ++    +   +  L  +   +       +  L  L  +  + N L  +  
Sbjct: 27  TVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP 83

Query: 407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPN 466
               + L  +   +     +T   +   +    L    +             + + +   
Sbjct: 84  LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143

Query: 467 WFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP-SNATSLN 525
                    +      +          L    +   +DISSN           +N  SL 
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203

Query: 526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN 585
            + N+ S        +   L  L L+ N L            +L  L+LANN      P 
Sbjct: 204 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 258

Query: 586 SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRN 645
            +  L  +  L L            GL  + +L  N+        I +L  L  L L  N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 646 NLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG--T 703
           N++      +  L  L  L  + N+      SSL+ L+ ++ +   +N +S   PL   T
Sbjct: 318 NISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLT 373

Query: 704 QLQSFN 709
           ++    
Sbjct: 374 RITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 2e-17
 Identities = 65/401 (16%), Positives = 127/401 (31%), Gaps = 45/401 (11%)

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353
             L    +        ++  +  L      +K    + ++ L++      L  ++ S+N+
Sbjct: 27  TVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNN------LTQINFSNNQ 77

Query: 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNL 413
           +T   P                         +  L KL  + +N N +  +   A  +NL
Sbjct: 78  LTDITP-------------------------LKNLTKLVDILMNNNQIADITPLANLTNL 112

Query: 414 SRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTH 473
           + L   +     +    +   +   +L++ ++             Q              
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172

Query: 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP-LPSNATSLNLSKNKFS 532
               L               L    +   +  ++N      P  + +N   L+L+ N+  
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 232

Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
             I  L SL+N L  LDL+NN +S   P        L  L L  N      P +      
Sbjct: 233 D-IGTLASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 288

Query: 593 IRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT 652
              L+          S L  +  L L  N +    P  +  L  L  L  + N ++    
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--V 344

Query: 653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693
             +  L ++++L    NQ     P  L+ L+ ++ + L+  
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 52/329 (15%), Positives = 107/329 (32%), Gaps = 23/329 (6%)

Query: 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLS 169
            L +LT ++ S N  +  +  + L  L  +       A+              L    ++
Sbjct: 64  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229
             +            LSS     +           +   +++  L  L+  +      I 
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
           S+ ++  S  +      +     N +         + +D +SL  NQL+         + 
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLT 241

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTK-------- 341
           +L  LDL++N++  +      +  L  L L   ++            +            
Sbjct: 242 NLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 342 ------NSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
                  +L +L L  N I+   P +   + L++L   NN ++     S+  L  +  L 
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLS 357

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADN 424
              N +  +      +NL+R+  L L D 
Sbjct: 358 AGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 69/444 (15%), Positives = 131/444 (29%), Gaps = 81/444 (18%)

Query: 135 SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194
           +L +     L        +     +L ++  L      +   +++D + +L++L  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 74

Query: 195 LNDLSNFSNWVQLLSKLHSLTTLSL-YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253
            N L++ +     L  L  L  + +  +        ++L NL             + L N
Sbjct: 75  NNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 254 SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCG 313
                   +SS+ +  IS  S            ++  L+ L   +   R           
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 314 LKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLE 373
             +  L+  E     +  I D++      +L+ L L+ N++   +  L   ++L  L+L 
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 374 NNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHD 433
           NN ++      +  L KL  LKL  N +                                
Sbjct: 250 NNQISNLA--PLSGLTKLTELKLGANQISN------------------------------ 277

Query: 434 WIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLS 493
            I P    T          +                        L L  N +    P  S
Sbjct: 278 -ISPLAGLTALTNLELNENQLEDI---------SPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 494 LRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN 553
           L                        +    L  + NK S  +S L +L+N + +L   +N
Sbjct: 328 L------------------------TKLQRLFFANNKVSD-VSSLANLTN-INWLSAGHN 361

Query: 554 LLSGKLPDCWFQFDSLVILNLANN 577
            +S   P        +  L L + 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 3e-08
 Identities = 56/334 (16%), Positives = 110/334 (32%), Gaps = 27/334 (8%)

Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
           +    + +L  ++ S+N+L  I     N+  L  + ++  ++            +G T  
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 343 SLEWLHLSSNEITGSMP-------NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLK 395
           + +   +   +   ++         + + S+L  L     L  G     +  L  L  L+
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 396 LNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM----G 451
               S   V   ++ + L+ L +L   +N ++       +    L+ +SL   ++     
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT 236

Query: 452 PRFPKWLQTQNTVPNWFWDLTHQRML-----LNLSSNQMRGKVPDLSLRFDISGPGIDIS 506
                 L   +   N   +L     L     L L +NQ+    P   L    +       
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN--LELNE 294

Query: 507 SNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF 566
           +   +        N T L L  N  S       SL+  L  L  +NN +S          
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPV-SSLTK-LQRLFFANNKVSD--VSSLANL 350

Query: 567 DSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
            ++  L+  +N      P  +  L  I  L L +
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIP----------- 154
             L  L +LT LDL+ N  S       L  L KL+ L L + + +   P           
Sbjct: 235 GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 155 ---------HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV 205
                      + NL  L +L L FNN+    ++  +S L+ L  L+   N +S+ S+  
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFANNKVSDVSS-- 346

Query: 206 QLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTEN 249
             L+ L ++  LS     +     S L  L +   +  + L + 
Sbjct: 347 --LANLTNINWLSAGHNQI-----SDLTPLANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.4 bits (207), Expect = 3e-18
 Identities = 75/369 (20%), Positives = 120/369 (32%), Gaps = 71/369 (19%)

Query: 36  CIDEEREALLTFKASLVDESGILSSWRREDEKRDCC--KWTGVGCSKRTGHVNKLDLQPI 93
           C  ++++ALL  K  L +    LSSW       DCC   W GV C   T           
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSWLPTT---DCCNRTWLGVLCDTDTQTY-------- 50

Query: 94  GFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI 153
                               +  LDLS  N                            PI
Sbjct: 51  -------------------RVNNLDLSGLNLPKP-----------------------YPI 68

Query: 154 PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHS 213
           P  L NL  L FL +   N   G     ++ L+ L YLY+   ++S              
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-----SQ 123

Query: 214 LTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP 273
           + TL         +  +   +++S  +L  I    N ++ ++     + S  L   +++ 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK-LFTSMTIS 182

Query: 274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQ 333
            N+L G IP  F  +         +          G+    + ++          +    
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH-------LAKNSLAF 235

Query: 334 DLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE 392
           DL       +L  L L +N I G++P  L +   L  LN+  N L G I    G L + +
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFD 294

Query: 393 MLKLNGNSL 401
           +     N  
Sbjct: 295 VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 3e-17
 Identities = 67/255 (26%), Positives = 100/255 (39%), Gaps = 8/255 (3%)

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSN-----HFEGPIPPLPSNATSLNLSKNKFS 532
           L+LS   +    P  S   ++                   P     +    L ++    S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
           G+I    S    L+ LD S N LSG LP       +LV +    N   G IP+S G    
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 593 IRSLSLYNRSQ---YEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG 649
           + +    +R++       +   L       S  +  G    +              N   
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 650 QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFN 709
               K+G  K+L+ LDL  N+ +G +P  L+QL  L  +++S+NNL G+IP G  LQ F+
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 710 ELVYAGNPELCGLPL 724
              YA N  LCG PL
Sbjct: 295 VSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 58/286 (20%), Positives = 101/286 (35%), Gaps = 29/286 (10%)

Query: 286 GRMVSLRYLDLSSNELRG---IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
            +   +  LDLS   L     IP  L N+  L  LY+ G      L   I    +     
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIP--PAIAKLT 101

Query: 343 SLEWLHLSSNEITGSMPNLGEFSS-LKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401
            L +L+++   ++G++P+       L  L+   N L+GT+  SI  L  L  +  +GN +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 402 GGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQ 461
            G I ++  S      ++ ++ N LT +    +            +   G     +   +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 462 NTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNA 521
           NT        +    L  +  ++                  +D+ +N   G +P   +  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNG--------------LDLRNNRIYGTLPQGLTQL 267

Query: 522 TSL---NLSKNKFSGSISFLCSLSNRLIYLDLSNN--LLSGKLPDC 562
             L   N+S N   G I    +L         +NN  L    LP C
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFN 171
           ++L  LDL  N   G+ +P+ L  L  L  L +S     G IP Q GNL R      + N
Sbjct: 244 KNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 172 NLFSGENL 179
               G  L
Sbjct: 302 KCLCGSPL 309

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 9e-13
 Identities = 52/318 (16%), Positives = 94/318 (29%), Gaps = 51/318 (16%)

Query: 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFN 171
                LDL  N  +         +L  L  L L + + +   P     L +L+ L LS N
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 172 NLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSS 231
            L         +       L +  N+++     V        +  L         I   +
Sbjct: 90  QLKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 232 LLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL 291
              +     L  I + + N+T                  ++P                SL
Sbjct: 146 FQGMKK---LSYIRIADTNIT------------------TIPQGLPP-----------SL 173

Query: 292 RYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
             L L  N++       L  +  L  L LS   +    +  +           L  LHL+
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL------ANTPHLRELHLN 227

Query: 351 SNEITGSMPNLGEFSSLKQLNLENNLLNG------TIHKSIGQLFKLEMLKLNGNSLGGV 404
           +N++      L +   ++ + L NN ++              +      + L  N +   
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

Query: 405 -ISEALFSNLSRLAALDL 421
            I  + F  +   AA+ L
Sbjct: 288 EIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 51/269 (18%), Positives = 86/269 (31%), Gaps = 25/269 (9%)

Query: 365 SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
                L+L+NN +          L  L  L L  N +  +   A F+ L +L  L L+ N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN 89

Query: 425 SLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ 484
            L            +L        K+               + F  L    ++   ++  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV-------------RKSVFNGLNQMIVVELGTNPL 136

Query: 485 MRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNR 544
               + + + +       I I+  +       LP + T L+L  NK +   +      N 
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN---- 600
           L  L LS N +S            L  L+L NN    K+P  +     I+ + L+N    
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255

Query: 601 ------RSQYEYKSTLGLVKILDLSSNKL 623
                      Y +       + L SN +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 6/228 (2%)

Query: 499 SGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGK 558
               +  S    E     LP +   L+L  NK +            L  L L NN +S  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 559 LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY-NRSQYEYKSTLGLVKILD 617
            P  +     L  L L+ N            L  +R       + +    + L  + +++
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 618 LSS--NKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI 675
           L +   K  G        +  L  + ++  N+T   T   G   SL  L L  N+     
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVD 187

Query: 676 PSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723
            +SL  L+ L+ + LS+N++S               ++  N +L  +P
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 9/221 (4%)

Query: 503 IDISSNHFEGPIPPLPSNATSL---NLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL 559
           +D+ +N           N  +L    L  NK S       +   +L  L LS N L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 560 PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKIL--- 616
                    L +           + N +  +  +   +   +S          +K L   
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 617 DLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP 676
            ++   +   +P+ +     L  L+L  N +T      +  L +L  L LS N       
Sbjct: 156 RIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 677 SSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNP 717
            SL+    L  + L+ N L          +    +    N 
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 32/252 (12%), Positives = 70/252 (27%), Gaps = 35/252 (13%)

Query: 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSL---NLSKNKFSGS 534
           L+L +N++   + D   +   +   + + +N      P   +    L    LSKN+    
Sbjct: 36  LDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 535 ISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
              +      L   +     +   + +   Q   +  L        G    +   +  + 
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLS 153

Query: 595 SLSL-YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP 653
            + +         +     +  L L  NK+       +  L  L  L LS N+++     
Sbjct: 154 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 654 KI-----------------------GQLKSLDFLDLSRNQFFG------GIPSSLSQLSG 684
            +                          K +  + L  N            P   ++ + 
Sbjct: 214 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

Query: 685 LSVMDLSYNNLS 696
            S + L  N + 
Sbjct: 274 YSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 57/268 (21%), Positives = 91/268 (33%), Gaps = 18/268 (6%)

Query: 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172
               + L  N  S         +   L+ L L S   A         L+ L+ LDLS N 
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 173 LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSL 232
                +      L  L  L+LD            L   L +L  L L    L  +   + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 233 LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLR 292
            +     +L  + L  N +++        + S  +DR+ L  N++    P AF  +  L 
Sbjct: 150 RD---LGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 293 YLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
            L L +N L  +  + L  +  L+ L L+             D  +      L+    SS
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-------DCRARPLWAWLQKFRGSS 257

Query: 352 NEITGSMPNLGEFSSLKQLNLENNLLNG 379
           +E+  S+P     +      L  N L G
Sbjct: 258 SEVPCSLPQ--RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 7e-09
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 8/180 (4%)

Query: 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581
            +L+L +         L      L YL L +N L     D +    +L  L L  N    
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 582 KIPNSMGFLHNIRSLSLYNRSQYEYKS----TLGLVKILDLSSNKLGGGVPKEIMDLVGL 637
               +   LH++  L L+              LG +  L L +N L     + +  L  L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 638 VALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
             L L+ N               L     S ++    +P  L+   G  +  L+ N+L G
Sbjct: 228 QYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 6/229 (2%)

Query: 503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSGKLPD 561
                   +     +P+ +  + L  N+ S    +   +  N  I    SN L       
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 562 CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR----SQYEYKSTLGLVKILD 617
                    +    N       P +   L  + +L L               L  ++ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 618 LSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS 677
           L  N L         DL  L  L L  N ++         L SLD L L +N+     P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 678 SLSQLSGLSVMDLSYNNLSGKIPLGTQL-QSFNELVYAGNPELCGLPLR 725
           +   L  L  + L  NNLS          ++   L    NP +C    R
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 44/289 (15%), Positives = 86/289 (29%), Gaps = 19/289 (6%)

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF 174
                 +      ++P  + +      + L     +            L  L L  N L 
Sbjct: 14  VTTSCPQQGLQ--AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 175 SGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLN 234
             +   +            D   L +          L  L TL L  C L  + P     
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPAT--FHGLGRLHTLHLDRCGLQELGPG---L 124

Query: 235 LNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYL 294
                +L+ + L +N L  ++    F    +L   + L  N++      AF  + SL  L
Sbjct: 125 FRGLAALQYLYLQDNAL-QALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 295 DLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI 354
            L  N +  +        G  +           L              +L++L L+ N  
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-----APLRALQYLRLNDNPW 237

Query: 355 TGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGG 403
                    ++ L++    ++ +  ++ +    L   ++ +L  N L G
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 46/298 (15%), Positives = 80/298 (26%), Gaps = 24/298 (8%)

Query: 237 SSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDL 296
            +         +  L  +V   +     +   RI L  N++      +F      R L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRISHVPAASFRA---CRNLTI 60

Query: 297 SSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG 356
                  + +          L              +   +       L  LHL    +  
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQE 119

Query: 357 SMPNLGEF-SSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSR 415
             P L    ++L+ L L++N L      +   L  L  L L+GN +  V   A F  L  
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHS 178

Query: 416 LAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQR 475
           L  L L  N               ++  +            +    + +P          
Sbjct: 179 LDRLLLHQN-----------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 476 MLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG 533
             L L+ N          L   +       SS+     +P   +      L+ N   G
Sbjct: 228 QYLRLNDNPWVCDCRARPLWAWLQK--FRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 15/208 (7%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
              ++  + N +  ++P  L      + L LS           L   +RL  L+L    L
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 174 FSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLL 233
              +    L  L +L   +  L  L      +            +L   D+     +SL 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDVSFNRLTSLP 116

Query: 234 NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY 293
                   E+ +L          P      +  ++++SL +N L          + +L  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 294 LDLSSNELRGIPKFLGNMCGLKILYLSG 321
           L L  N L  IPK       L   +L G
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 2/194 (1%)

Query: 503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDC 562
           ++    +     P LP + T L+LS+N              RL  L+L    L+    D 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 563 WFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNK 622
                  + L+         +  ++  L  +        S                    
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 623 LGGGVPKEIMDLVGLVAL-NLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQ 681
               +P  ++     +   +L+ NNLT      +  L++LD L L  N  +  IP     
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 682 LSGLSVMDLSYNNL 695
              L    L  N  
Sbjct: 194 SHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 4/208 (1%)

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
           ++   +N  K   +   +    L      L LS NLL          +  L  LNL    
Sbjct: 10  ASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV 638
                 +    +     LS                  +   S      +P   +  +G +
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 639 ALNLSRNNLTGQITPKIGQLKSLDFLDL-SRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
                + N    + P +            + N         L+ L  L  + L  N+L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 698 KIPLGTQLQSFNELVYAGNPELCGLPLR 725
                            GNP LC   + 
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 28/216 (12%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 341 KNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNS 400
             S   ++     +T   P+L        L+L  NLL      ++    +L  L L+   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 401 LGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQT 460
           L  +  +     L                 + D       +   LG              
Sbjct: 67  LTKLQVDGTLPVL----------------GTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 461 QNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSN 520
           + T            +            +P   L        + +++N+       L + 
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 521 ATS---LNLSKNKFSGSISFLCSLSNRLIYLDLSNN 553
             +   L L +N               L +  L  N
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 20/102 (19%), Positives = 27/102 (26%), Gaps = 5/102 (4%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRL 163
           + P LL            NN         L  L  L  L L        IP        L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 164 QFLDLSFNNLFSGENL----DWLSHLSSLIYLYLDLNDLSNF 201
            F  L  N       +     WL   +  +Y++    D+   
Sbjct: 198 PFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAM 239

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 57/326 (17%), Positives = 103/326 (31%), Gaps = 17/326 (5%)

Query: 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQL 328
            + L +  L  S+PE       L  L  S N L  +P+   ++  L +   + K L    
Sbjct: 42  ELELNNLGLS-SLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 329 SEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQL 388
                   S      L  L  SS      + N    +SLK+L      L      +    
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN----NSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 389 FKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHC 448
              E+  L   +     + +L        +L+       +      +      T      
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 449 KMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508
            +    P    +   +      LT    L    +     +     L           +S+
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDS 568
           +    +  LP +   LN+S NK    +  L +L  RL  L  S N L+ ++P+      +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNK----LIELPALPPRLERLIASFNHLA-EVPEL---PQN 325

Query: 569 LVILNLANNNFFGKIPNSMGFLHNIR 594
           L  L++  N    + P+    + ++R
Sbjct: 326 LKQLHVEYNP-LREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 16/100 (16%)

Query: 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQD 334
           N     I        SL  L++S+N+L  +P        L+ L  S   L  ++ E  Q 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLA-EVPELPQ- 324

Query: 335 LSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLEN 374
                   +L+ LH+  N +    P++    S++ L + +
Sbjct: 325 --------NLKQLHVEYNPLR-EFPDI--PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 54/347 (15%), Positives = 94/347 (27%), Gaps = 35/347 (10%)

Query: 339 CTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNG 398
           C       L L++  ++ S+P L     L+ L    N L   + +    L  L +   N 
Sbjct: 35  CLDRQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 399 NSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWL 458
            +L  +                     L      +          +    K+       L
Sbjct: 91  KALSDL------------------PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 132

Query: 459 QTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP 518
           +    +P     +      L                  + S   +       E  +    
Sbjct: 133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 192

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
                  L    F  +I    +L   L  L  S   L+ +        +    L   + +
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 252

Query: 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG-L 637
                  S    +     +  N  +        L + L++S+NKL      E+  L   L
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL-EELNVSNNKL-----IELPALPPRL 306

Query: 638 VALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF--FGGIPSSLSQL 682
             L  S N+L  ++      LK    L +  N    F  IP S+  L
Sbjct: 307 ERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 240 SLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSN 299
           SLE ++++ N L   +      +      R+    N L   +PE      +L+ L +  N
Sbjct: 285 SLEELNVSNNKLI-ELPALPPRLE-----RLIASFNHLA-EVPELPQ---NLKQLHVEYN 334

Query: 300 ELRGIPKFLGNMCGLKI 316
            LR  P    ++  L++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 13/87 (14%)

Query: 155 HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214
                   L+ L++S N L     L        L  L    N L+             +L
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLAEVPEL------PQNL 326

Query: 215 TTLSLYSCDL--PPIIPSSLLNLNSSN 239
             L +    L   P IP S+ +L  ++
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 18/136 (13%)

Query: 61  WRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLS 120
                +  +  +                +L P  +       +I         L  L++S
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 121 RNNFSGSSIPEFLGSLGKL--SYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGEN 178
            N      +P     L +L  S+  L+       +P    N   L+ L + +N L    +
Sbjct: 293 NNKL--IELPALPPRLERLIASFNHLAE------VPELPQN---LKQLHVEYNPLREFPD 341

Query: 179 LDWLSHLSSLIYLYLD 194
           +       S+  L ++
Sbjct: 342 I-----PESVEDLRMN 352

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 53/284 (18%), Positives = 92/284 (32%), Gaps = 17/284 (5%)

Query: 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF 174
             LDL+  N         L     +       +    P+        R+Q +DLS + + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIE 59

Query: 175 SGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDL-----PPIIP 229
                  LS  S L  L L+   LS+    V  L+K  +L  L+L  C          + 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMV 289
           SS   L+  N     D TE ++  +V      ++   +        +   S        +
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
               L  S        +    +  L+ L LS       + E + +L       +L+ L +
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR--CYDIIPETLLELGEIP---TLKTLQV 232

Query: 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEM 393
                 G++  L E  +L  L +  +        +IG     E+
Sbjct: 233 FGIVPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 3/220 (1%)

Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN 159
              +          + ++DLS +    S++   L    KL  L L     + PI + L  
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 160 LSRLQFLDLSFN-NLFSGENLDWLSHLSSLIYLYLDLND-LSNFSNWVQLLSKLHSLTTL 217
            S L  L+LS             LS  S L  L L      +     V +     ++T L
Sbjct: 94  NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

Query: 218 SLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQL 277
           +L               +    +L  +DL+++ +  +     F   + L          +
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213

Query: 278 QGSIPEAFGRMVSLRYLDLSSN-ELRGIPKFLGNMCGLKI 316
                   G + +L+ L +        +      +  L+I
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
           L + LDL+   L   V   ++   G++A    R+ +  Q   +      +  +DLS +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVI 58

Query: 672 -FGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
               +   LSQ S L  + L    LS  I 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 51/464 (10%), Positives = 111/464 (23%), Gaps = 34/464 (7%)

Query: 238 SNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG----SIPEAFGRMVSLRY 293
           S  ++ +D+    L+++ +  L  +       + L    L       I  A     +L  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQC-QVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 294 LDLSSNEL-----RGIPKFLGNM-CGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347
           L+L SNEL       + + L    C ++ L L    L G     +              L
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407
             +     G           +    +  L   ++  +  +     +              
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK------- 172

Query: 408 ALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467
                +S     +     L             L   S G      R    +         
Sbjct: 173 --ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLS 527
               +++   + ++        P   LR          +    +         +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 528 KNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSM 587
                G                L        L      F +    + ++     +    +
Sbjct: 291 AGNELGDEGARLLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 345

Query: 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVG----LVALNLS 643
              +N    +              ++++L L+   +       +   +     L  L+LS
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 644 RNNLTGQITPKIGQ-----LKSLDFLDLSRNQFFGGIPSSLSQL 682
            N L      ++ +        L+ L L    +   +   L  L
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLS----SAEFAGPIPHQLGNLSRLQFLDLS 169
           +  LD+     S +   E L  L +   + L     +      I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 170 FNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNW 204
            N L     +  +          +    L N    
Sbjct: 64  SNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-06
 Identities = 44/418 (10%), Positives = 100/418 (23%), Gaps = 15/418 (3%)

Query: 289 VSLRYLDLSSNEL--RGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346
           + ++ LD+   EL      + L  +   +++ L    L     + I          +L  
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP--ALAE 59

Query: 347 LHLSSNEITGS-MPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI 405
           L+L SNE+    +  + +        ++   L        G       L+         +
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 406 SEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP 465
           S+ L  +       +   +                         +    P + +   +  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 466 NWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN 525
           +                          +L+ +  G   D   +              +L 
Sbjct: 180 DINEAGVRVLC-----QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN 585
            +K    G       L +    L        G           ++    +          
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 586 SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRN 645
                  +   +L           +          +     + +    L   ++ N   +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 646 NLTGQITPKIGQL-KSLDFLDLSRNQF----FGGIPSSLSQLSGLSVMDLSYNNLSGK 698
               ++   +GQ    L  L L+           + ++L     L  +DLS N L   
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 62/470 (13%), Positives = 128/470 (27%), Gaps = 45/470 (9%)

Query: 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLN-LNSSNSLEVID 245
            +  L +   +LS+ + W +LL  L     + L  C L       + + L  + +L  ++
Sbjct: 3   DIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 246 LTENNLTNSVYPWL---FNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
           L  N L +     +       S  + ++SL +  L G+        +         +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 303 GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLG 362
            +    G     + L      L+    E+    ++ C   +         +      N  
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 363 EFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA 422
             +          +L   +  S  QL  L++      S        + ++ + L  L L 
Sbjct: 182 NEAG-------VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSS 482
            N L      +  P     +  L    +           +         + + + L  + 
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 483 NQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLC--- 539
               G         +       +               ++ L  ++      IS      
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 540 -----------SLSNRLIYLDLSNNLLSGK----LPDCWFQFDSLVILNLANNNFFGKIP 584
                         + L  L L++  +S      L        SL  L+L+NN       
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-- 412

Query: 585 NSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDL 634
              G L  + S+          +    L++ L L        +   +  L
Sbjct: 413 ---GILQLVESV----------RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 55/462 (11%), Positives = 102/462 (22%), Gaps = 26/462 (5%)

Query: 267 VDRISLPSNQLQGS-IPEAFGRMVSLRYLDLSSNEL-----RGIPKFLGNMCGLKILYLS 320
           +  + +   +L  +   E    +   + + L    L     + I   L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 321 GKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGT 380
             EL       +  +  G    S +   LS      +    G  SS  +       L+ +
Sbjct: 64  SNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 381 IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQL 440
            +       +L    L          +  + +LS  +   LA          +       
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 441 NTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISG 500
              +              Q +          +     L                   +  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP 560
            G+         P   L +          K  G +  +      L  L L+ N       
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN------E 294

Query: 561 DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSS 620
                   L    L        +                +            +    L  
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 621 NKLGGGVPKEIMDLVGLVALNLSRNNLTGQ----ITPKIGQLKSLDFLDLSRNQFFGGIP 676
             +             L  L L+  +++      +   +    SL  LDLS N       
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 677 SSLSQ-----LSGLSVMDLSYNNLSGKIP--LGTQLQSFNEL 711
             L +        L  + L     S ++   L    +    L
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 22/125 (17%)

Query: 61  WRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLS 120
                 +    +    G  +    +  L L             +   LL    L  LDLS
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLS 405

Query: 121 RNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLD 180
            N    + I + + S+ +                        L+ L L  +  +S E  D
Sbjct: 406 NNCLGDAGILQLVESVRQ--------------------PGCLLEQLVLY-DIYWSEEMED 444

Query: 181 WLSHL 185
            L  L
Sbjct: 445 RLQAL 449

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 8e-07
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165
             L +L  +T+LDLS N      +P  L +L  L  L  S             NL RLQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVA--NLPRLQE 69

Query: 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV-QLLSKLHSLTTL 217
           L L  N L     +  L     L+ L L  N L        +L   L S++++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLS 329
           + L    L  ++     +++ + +LDLS N LR +P  L  +  L++L            
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--------ASD 52

Query: 330 EFIQDLSSGCTKNSLEWLHLSSNEITG--SMPNLGEFSSLKQLNLENNLLNG 379
             ++++        L+ L L +N +    ++  L     L  LNL+ N L  
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 315 KILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLEN 374
           ++L+L+ K+L          L        +  L LS N +    P L     L+ L   +
Sbjct: 1   RVLHLAHKDLT--------VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 52

Query: 375 NLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
           N         +  L +L+ L L  N L    +     +  RL  L+L  NSL 
Sbjct: 53  N--ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 36/151 (23%)

Query: 164 QFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD 223
           + L L+  +L     L  L  L  + +L L  N L      +  L  L  L        +
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 224 LPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           +  +             L+ + L  N L                            +  +
Sbjct: 58  VDGVAN--------LPRLQELLLCNNRLQQ-------------------------SAAIQ 84

Query: 284 AFGRMVSLRYLDLSSNELRGIPKFLGNMCGL 314
                  L  L+L  N L         +  +
Sbjct: 85  PLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 26/117 (22%)

Query: 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF---------- 663
           ++L L+   L   V   +  L+ +  L+LS N L     P +  L+ L+           
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57

Query: 664 ------------LDLSRNQFFGG-IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
                       L L  N+         L     L +++L  N+L  +  +  +L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 547 YLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN-SMGFLHNIRSLSLYNRSQYE 605
            L L++  L+        Q   +  L+L++N      P  +      +   S       +
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 606 YKSTLGLVKILDLSSNKL-GGGVPKEIMDLVGLVALNLSRNNLTG 649
             + L  ++ L L +N+L      + ++    LV LNL  N+L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSF 170
           L +   +   ++N + +     L  +  LS  G       G     +  L+ L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKD 72

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
           N +     L  L+ ++ L      L ++S  +    + +   + T ++  +         
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 231 SLLNLNSS-NSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL-----PSNQLQGSIPEA 284
            L    +   ++  +    N    S+     +  + L +   L       N++    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 285 FGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320
              + +L  + L +N++  +   L N   L I+ L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 12/217 (5%)

Query: 364 FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD 423
            ++  ++    + +  T+  +   L  +  L   G  +  +        L+ L  L+L D
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKD 72

Query: 424 NSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSN 483
           N +T       +       +S    K           +              +    +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 484 QMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG----SISFLC 539
            +   +  ++    ++G       +     +  L   A    L+  K        IS L 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 540 SLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
           SL N LI + L NN +S   P       +L I+ L N
Sbjct: 193 SLPN-LIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 10/218 (4%)

Query: 159 NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLS 218
            L+    +    +N+    +    + L  +  L      ++        +  L++L  L 
Sbjct: 17  ALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIEG----VQYLNNLIGLE 69

Query: 219 LYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ 278
           L    +  + P   L   +   L    L   +    +        +S       P   L 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 279 GSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEF--IQDLS 336
                            L+                      +  +L    ++   I D+S
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 337 SGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLEN 374
              +  +L  +HL +N+I+  +  L   S+L  + L N
Sbjct: 190 PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 13/217 (5%)

Query: 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP----SSLLNLNSSNS 240
           L++ I +    +++++        + L  +TTLS +   +  I      ++L+ L   ++
Sbjct: 18  LANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
                    NLT      L       V  I+   +     +       V+      +   
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 301 LRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
           L      + N+  L  L        G          +  +K  L  L    N+I+  +  
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK--LTTLKADDNKISD-ISP 190

Query: 361 LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397
           L    +L +++L+NN ++      +     L ++ L 
Sbjct: 191 LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 39/348 (11%), Positives = 86/348 (24%), Gaps = 34/348 (9%)

Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG 402
           SL+   +++ +       L E  S+K++ L  N +     + + +               
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA------------ 56

Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQN 462
                    +   L   + +D                L    L   K+            
Sbjct: 57  ---------SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 107

Query: 463 TVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT 522
           T      D   +   L        G  P        +     +            P   +
Sbjct: 108 TAQEPLIDFLSKHTPLEHLYLHNNGLGP-----QAGAKIARALQELAVNKKAKNAPPLRS 162

Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK 582
            +       +GS+            L     + +G  P+         +           
Sbjct: 163 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 222

Query: 583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNL 642
             N+   L +              +  L    +    +  +     K  ++ +GL  L L
Sbjct: 223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--LENIGLQTLRL 280

Query: 643 SRNNLTGQITPKI-----GQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685
             N +       +      ++  L FL+L+ N+ F      + ++  +
Sbjct: 281 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 19/314 (6%)

Query: 104 ITPALLKLQHLTYLDLSRNNFSG---SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNL 160
           +   LL+   +  + LS N         + E + S   L     S              L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 161 SRLQFLDLSFNNLFS---------GENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL 211
             L    L    L +             + L    S       L   +N           
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 212 HSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS 271
            +L  L++           S++   +      +        +        +  + +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEF 331
           +    L+G       +++ L+    +      +   L +   L+ L L+   L  + +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMPN------LGEFSSLKQLNLENNLLNGTIHKSI 385
           + D  S      L+ L L  NEI              +   L  L L  N         +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVV 321

Query: 386 GQLFKLEMLKLNGN 399
            ++ ++   +  G 
Sbjct: 322 DEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 48/334 (14%), Positives = 87/334 (26%), Gaps = 29/334 (8%)

Query: 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349
           SL+   +++ + + +   L     +K + LSG  +  + + ++ +  +      LE    
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEF 66

Query: 350 SSNEITGSMPNLGE-FSSLKQLNLENNLL---------NGTIHKSIGQLFKLEMLKLNGN 399
           S          + E    L Q  L+   L          G   +     F  +   L   
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 400 SLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQ 459
            L               A  +LA N                N +  G  K   +  +  +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 460 TQNTV------PNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGP 513
             +TV                   L          + D +     S        +     
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 514 IPPLPSNATSLNLSKNKFSGSISFLCSLSN-RLIYLDLSNNLLSGK----LPDCWF-QFD 567
              L        LS    +  +     L N  L  L L  N +       L      +  
Sbjct: 247 ELGLNDC----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR 601
            L+ L L N N F +  + +  +  + S      
Sbjct: 303 DLLFLEL-NGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 40/357 (11%), Positives = 87/357 (24%), Gaps = 42/357 (11%)

Query: 362 GEFS-SLKQLNLENNLLNG--TIHKSIGQLFKLEMLKLNGNSLGGVISEAL---FSNLSR 415
             FS   K L L+        ++   + +   ++ + L+GN++G   +  L    ++   
Sbjct: 1   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 416 LAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQR 475
           L   + +D                L    L   K+            T      D   + 
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 476 MLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI 535
             L        G  P        +     +            P   + +       +GS+
Sbjct: 121 TPLEHLYLHNNGLGP-----QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 175

Query: 536 SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRS 595
                       L     + +G  P+         +             N+   L +   
Sbjct: 176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235

Query: 596 LSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI 655
                      +          L+   L       ++D                      
Sbjct: 236 AIALKSWPNLREL--------GLNDCLLSARGAAAVVDAFSK------------------ 269

Query: 656 GQLKSLDFLDLSRNQFFGGIPSSL-----SQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
            +   L  L L  N+       +L      ++  L  ++L+ N  S +  +  +++ 
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 35/310 (11%), Positives = 78/310 (25%), Gaps = 19/310 (6%)

Query: 138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL---FSGENLDWLSHLSSLIYLYLD 194
            L    ++  E    +   L     ++ + LS N +    +    + ++    L      
Sbjct: 9   SLKLDAIT-TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 195 LNDLSNFSN-----WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTEN 249
                   +        LL  L     L           P++   L    S         
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 250 NLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLG 309
              N + P      +  +  +++           +     +           +       
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 310 NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQ 369
                 +      E    L               L+    +    +     L  + +L++
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 370 LNLENNLLNGTIHKSIGQLF------KLEMLKLNGNSLGG----VISEALFSNLSRLAAL 419
           L L + LL+     ++   F       L+ L+L  N +       +   +   +  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 420 DLADNSLTLE 429
           +L  N  + E
Sbjct: 308 ELNGNRFSEE 317

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 17/214 (7%)

Query: 349 LSSNEITGSMP-----NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGG 403
           L S  IT   P     +   F+   + NL+   +   + ++  +L  ++ +  N + +  
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 60

Query: 404 VISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNT 463
           V        L  +  L L  N LT       +       +     K         + ++ 
Sbjct: 61  VQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 464 VPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP----- 518
                       ++       +      ++    +S      + +  +  I  +      
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSN 552
           +   +L LSKN  S  +  L  L N L  L+L +
Sbjct: 178 TKLQNLYLSKNHIS-DLRALAGLKN-LDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 13/194 (6%)

Query: 135 SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194
           +  +     L        +      L+ +  +  + +++   +++  + +L ++  L+L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSN-------SLEVIDLT 247
            N L++      L +        +             L +L+  +        L  +   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF 307
           E+    +       V S L    +L     Q S       +  L+ L LS N +  +   
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-A 195

Query: 308 LGNMCGLKILYLSG 321
           L  +  L +L L  
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 23/211 (10%)

Query: 171 NNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230
             +FS +        +  I   L    +++        ++L+S+  +   + D+      
Sbjct: 15  KQIFSDDAF------AETIKDNLKKKSVTD----AVTQNELNSIDQIIANNSDI-----K 59

Query: 231 SLLNLNSSNSLEVIDLTENNLTN-------SVYPWLFNVSSSLVDRISLPSNQLQGSIPE 283
           S+  +    ++  + L  N LT+           WLF   + + D  SL   +   S+  
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 284 AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS 343
               +  +  L                     +  L+  +        I D+        
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLEN 374
           L+ L+LS N I+  +  L    +L  L L +
Sbjct: 180 LQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 136 LGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL 195
           L +     L        +     +L ++  L      + S + +++L++L+ + +    L
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74

Query: 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSV 255
            D++   N  +L+  L +   ++  +        + L   N+  +         NL    
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 256 YPWLFNVSSSLVDRISLPSNQLQGSI----PEAFGRMVSLRYLDLSSNELRGIPKFLGNM 311
                    S +  ++        S      +    + +L  LD+SSN++  I   L  +
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKL 193

Query: 312 CGLKIL 317
             L+ L
Sbjct: 194 TNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 6/210 (2%)

Query: 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450
              L+     L  +   A FS    L  ++++ N        + I     + +   H   
Sbjct: 31  AIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQN-----DVLEVIEADVFSNLPKLHEIR 84

Query: 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHF 510
             +    L           +L +  +      +           +  +            
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144

Query: 511 EGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLV 570
                 L   +  L L+KN      +   + +         NN L     D +      V
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204

Query: 571 ILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600
           IL+++           +  L  +R+ S YN
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYN 234

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 3/175 (1%)

Query: 499 SGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI-SFLCSLSNRLIYLDLSNNLLSG 557
            G  +D +    +     +P + T L L+ N+        L      L+ L+L  N L+G
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 558 KLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILD 617
             P+ +     +  L L  N            LH +++L+LY+  Q           +  
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNS 127

Query: 618 LSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQF 671
           L+S  L          L         ++   G        +++ +   DL  ++F
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	776
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.6e-40  Score=343.61  Aligned_cols=296  Identities=29%  Similarity=0.457  Sum_probs=236.0

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC--ccceeeCCCC--CcEEEEECCCCCCCCCCCce--eccccc
Q 047152           35 RCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCK--WTGVGCSKRT--GHVNKLDLQPIGFDSFPLRG--KITPAL  108 (776)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~l~g--~~~~~l  108 (776)
                      -|.++||+||++||+++.+|. .+++|.   .++|||.  |.||+|+..+  +||++|+|++     .++.|  .+|+++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~-----~~l~g~~~lp~~l   72 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSSL   72 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC-----CCCCCCCCCChHH
Confidence            599999999999999999875 689997   4789994  9999998643  4899999998     56666  577888


Q ss_pred             cCCCCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          109 LKLQHLTYLDLSR-NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       109 ~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      +++++|++|+|++ |+++|. +|..|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.. .          
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~-~----------  140 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-T----------  140 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-C----------
T ss_pred             hcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccc-c----------
Confidence            8888888888876 777775 88888888888888888888887777777777778888777776543 2          


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCC-ccEEEcCCCCCCCCchhhHhhcCCCC
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNS-LEVIDLTENNLTNSVYPWLFNVSSSL  266 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~~~~~  266 (776)
                                      ++..++++++|+++++++|.+.+.+|..+..+   .. ++.+++++|++++..|..+..+.   
T Consensus       141 ----------------~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l---~~l~~~l~~~~n~l~~~~~~~~~~l~---  198 (313)
T d1ogqa_         141 ----------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSF---SKLFTSMTISRNRLTGKIPPTFANLN---  198 (313)
T ss_dssp             ----------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCC---CTTCCEEECCSSEEEEECCGGGGGCC---
T ss_pred             ----------------CchhhccCcccceeeccccccccccccccccc---cccccccccccccccccccccccccc---
Confidence                            33455566666666666666666666666665   33 47778888888777777776665   


Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      ...++++.+...+.+|..+..+++++.+++++|.+.+.+..++.+++|++|++++|+++|.+|..++.++      +|++
T Consensus       199 ~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~------~L~~  272 (313)
T d1ogqa_         199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS  272 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC------CCCE
Confidence            4578888888888888888999999999999999888666788888999999999999988888888887      8999


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCcc-ccc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNL-LNG  379 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~-l~~  379 (776)
                      |+|++|+++|.+|.++++++|+.+++++|+ +.|
T Consensus       273 L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             EECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence            999999988888888888888888888886 443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=2.6e-31  Score=277.35  Aligned_cols=187  Identities=34%  Similarity=0.548  Sum_probs=164.5

Q ss_pred             CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCC-cEEeccCCcccccCCccccccCCCcEEec
Q 047152          520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSL-VILNLANNNFFGKIPNSMGFLHNIRSLSL  598 (776)
Q Consensus       520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  598 (776)
                      .|+.+++++|++.+.+|..+..+++++++++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+..      
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~------  199 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL------  199 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC------
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc------
Confidence            45555555555556666667778889999999999999999999888876 88999999999999888776544      


Q ss_pred             CCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc
Q 047152          599 YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS  678 (776)
Q Consensus       599 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  678 (776)
                                     ..++++++...+.+|..++.+++++.+++++|.+++.+| .++.+++|++|+|++|+++|.+|+.
T Consensus       200 ---------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~  263 (313)
T d1ogqa_         200 ---------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             ---------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG
T ss_pred             ---------------ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChH
Confidence                           368999999999999999999999999999999997655 6899999999999999999999999


Q ss_pred             CcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 047152          679 LSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCP  729 (776)
Q Consensus       679 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l~~~c~  729 (776)
                      ++++++|++|||++|+++|.+|..+.+++++.+.+.||+.+||.|+. .|.
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             HhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CCC
Confidence            99999999999999999999999888999999999999999999876 673

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.7e-26  Score=243.30  Aligned_cols=163  Identities=22%  Similarity=0.279  Sum_probs=104.9

Q ss_pred             CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEec
Q 047152          519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL  598 (776)
Q Consensus       519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  598 (776)
                      .++++|++++|+++..  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..+..++.+++
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccc
Confidence            3445555555554432  123445555555555555553222  444555555555555554322  1444555555555


Q ss_pred             CCCccccc--ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC
Q 047152          599 YNRSQYEY--KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       599 ~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  676 (776)
                      .++.....  ...++.++.|++++|++++..  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++.+|
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            44433221  334566688999999998643  37889999999999999984 44 68899999999999999987665


Q ss_pred             ccCcCCCCCCeeeCCCC
Q 047152          677 SSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       677 ~~l~~l~~L~~L~ls~N  693 (776)
                        +.++++|+.|++++|
T Consensus       369 --l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 --LANLTRITQLGLNDQ  383 (384)
T ss_dssp             --GTTCTTCSEEECCCE
T ss_pred             --hccCCCCCEeeCCCC
Confidence              888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.4e-25  Score=236.88  Aligned_cols=172  Identities=25%  Similarity=0.377  Sum_probs=87.1

Q ss_pred             HhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCC
Q 047152          259 LFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSG  338 (776)
Q Consensus       259 l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~  338 (776)
                      ...+++  ++.+++++|.+++..|  +..+++|++|++++|.+++++ .+..+++|+.+++++|.+++..+  +..++  
T Consensus       193 ~~~l~~--~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~~--  263 (384)
T d2omza2         193 LAKLTN--LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLT--  263 (384)
T ss_dssp             GGGCTT--CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCT--
T ss_pred             cccccc--cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccccc--
Confidence            334444  5555555555554432  334455555555555555543 34455555555555555554332  33333  


Q ss_pred             CcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcE
Q 047152          339 CTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA  418 (776)
Q Consensus       339 ~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~  418 (776)
                          +|++|++++|++++. +.+..++.++.++++.|.+++.  ..+..+++++.|++++|++++..   .+..+++|++
T Consensus       264 ----~L~~L~l~~~~l~~~-~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~  333 (384)
T d2omza2         264 ----KLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQR  333 (384)
T ss_dssp             ----TCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCE
T ss_pred             ----cCCEeeccCcccCCC-Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc---ccccCCCCCE
Confidence                555555555555532 2244555555555555555532  22445555555555555554432   1445555555


Q ss_pred             EECCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152          419 LDLADNSLTLEFSHDWIPPFQLNTISLGHCKMG  451 (776)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  451 (776)
                      |++++|+++..  ..+..+++|++|++++|+++
T Consensus       334 L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         334 LFFANNKVSDV--SSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCC--hhHcCCCCCCEEECCCCcCC
Confidence            55555555432  13445555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.9e-23  Score=213.17  Aligned_cols=61  Identities=28%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             CCCCEEeCCCCCCCCCCCC-ccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCC
Q 047152          112 QHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLF  174 (776)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  174 (776)
                      +.+++|+|++|+++.  +| ..|.++++|++|++++|.+....|..|.++++|++|++++|++.
T Consensus        31 ~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          31 PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            345555555555542  33 24555555555555555555444445555555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.8e-23  Score=214.03  Aligned_cols=243  Identities=22%  Similarity=0.261  Sum_probs=193.9

Q ss_pred             CCccceeeCCC---------CCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCE
Q 047152           71 CKWTGVGCSKR---------TGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSY  141 (776)
Q Consensus        71 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~  141 (776)
                      |.|++|.|+..         ...++.|+|++     +.++...+.+|.++++|++|++++|.+... .|..|.++++|++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~   83 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER   83 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcC-----CcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCE
Confidence            78999999642         24689999999     566655556899999999999999999964 6788999999999


Q ss_pred             EecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccC
Q 047152          142 LGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS  221 (776)
Q Consensus       142 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~  221 (776)
                      |++++|+++ .+|..+  ...++.|++++|.+.. .....+.....++.++...|...........+..+++|+++++++
T Consensus        84 L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          84 LYLSKNQLK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             EECCSSCCS-BCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ecccCCccC-cCccch--hhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            999999998 566543  4689999999998864 444567788888999998887665544556788889999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCC
Q 047152          222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL  301 (776)
Q Consensus       222 n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  301 (776)
                      |.+... |..+  .   ++|+.|++++|...+..+..+..++.  ++.|++++|.+++..+..+.++++|++|+|++|++
T Consensus       160 n~l~~l-~~~~--~---~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         160 TNITTI-PQGL--P---PSLTELHLDGNKITKVDAASLKGLNN--LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             SCCCSC-CSSC--C---TTCSEEECTTSCCCEECTGGGTTCTT--CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CCcccc-Cccc--C---CccCEEECCCCcCCCCChhHhhcccc--ccccccccccccccccccccccccceeeecccccc
Confidence            887653 2221  2   77888888888888777777877777  88888888888887778888888888888888888


Q ss_pred             CCCchhhcccCCCcEEeccCCcCCCccchH
Q 047152          302 RGIPKFLGNMCGLKILYLSGKELKGQLSEF  331 (776)
Q Consensus       302 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~  331 (776)
                      +.+|..+..+++|++|++++|+++......
T Consensus       232 ~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         232 VKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             SSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             cccccccccccCCCEEECCCCccCccChhh
Confidence            888888888888888888888877554433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=213.10  Aligned_cols=152  Identities=20%  Similarity=0.112  Sum_probs=121.2

Q ss_pred             cccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccccccc
Q 047152          531 FSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTL  610 (776)
Q Consensus       531 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l  610 (776)
                      ++...+..+..+++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|                 
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-----------------  155 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-----------------  155 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-----------------
Confidence            333444556667778888888888876666677778888888888888876666666666655                 


Q ss_pred             ccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeC
Q 047152          611 GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDL  690 (776)
Q Consensus       611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  690 (776)
                         +.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++||+++|++.+..|..+..+++|++|++
T Consensus       156 ---~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         156 ---THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             ---CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             ---hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence               67788888888777888888888999999999888888888888889999999999998888888888888999999


Q ss_pred             CCCcceecCCCC
Q 047152          691 SYNNLSGKIPLG  702 (776)
Q Consensus       691 s~N~l~g~iP~~  702 (776)
                      ++|++.|.++..
T Consensus       233 ~~N~l~C~C~~~  244 (284)
T d1ozna_         233 NDNPWVCDCRAR  244 (284)
T ss_dssp             CSSCEECSGGGH
T ss_pred             cCCCCCCCccch
Confidence            999998877643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.8e-23  Score=206.40  Aligned_cols=194  Identities=24%  Similarity=0.218  Sum_probs=144.8

Q ss_pred             CeEeccCCcccccCCC-CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcc
Q 047152          501 PGIDISSNHFEGPIPP-LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF  579 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  579 (776)
                      ..++.+++.++. +|. .++++++|++++|+|++..+..|..+++|++|+|++|+|+. +| .+..+++|++|++++|++
T Consensus        13 ~~v~C~~~~L~~-iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          13 LEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCC
T ss_pred             eEEEccCCCCCe-eCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccc
Confidence            456777777775 454 35689999999999998888889999999999999999984 44 357899999999999999


Q ss_pred             cccCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccc
Q 047152          580 FGKIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI  655 (776)
Q Consensus       580 ~~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  655 (776)
                      ++ .+..+..+++|+.|+++++.....    ...+..+++|++++|.++...+..+..++.|+.|++++|++++..+..|
T Consensus        90 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~  168 (266)
T d1p9ag_          90 QS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL  168 (266)
T ss_dssp             SS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             cc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccc
Confidence            84 566788888887777766544332    2355667777777777776666666667777777777777776666667


Q ss_pred             cCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecC
Q 047152          656 GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI  699 (776)
Q Consensus       656 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  699 (776)
                      +.+++|++|||++|+|+ .+|+.+..+++|+.|++++|++.|.+
T Consensus       169 ~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            77777777777777776 66666667777777777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=206.36  Aligned_cols=218  Identities=22%  Similarity=0.198  Sum_probs=140.5

Q ss_pred             CCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCC
Q 047152           98 FPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE  177 (776)
Q Consensus        98 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~  177 (776)
                      .++. .+|..+.  +.+++|+|++|+|+.. .+..|.++++|++|++++|++.+..+..+..+..+++++...+......
T Consensus        21 ~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          21 QGLQ-AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             SCCS-SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             CCCC-ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444 4454443  5688999999999853 3457888999999999999988777777888888888877644433324


Q ss_pred             CchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchh
Q 047152          178 NLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYP  257 (776)
Q Consensus       178 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~  257 (776)
                      .+..++++++|++|++++|.+....  ...+...++|+.+++++|++++..+..+..+   ++|++|++++|++.+..+.
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~---~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCEECTT
T ss_pred             cchhhcccccCCEEecCCccccccc--ccccchhcccchhhhccccccccChhHhccc---cchhhcccccCcccccchh
Confidence            4556777777888887777776542  2445666677777777777766656666555   5666666666666554455


Q ss_pred             hHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCC
Q 047152          258 WLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKG  326 (776)
Q Consensus       258 ~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~  326 (776)
                      .+.++++  |+.+++++|++++..|..|..+++|++|++++|.+.++ |..++.+++|++|++++|.+..
T Consensus       172 ~f~~l~~--L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         172 AFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTT--CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccc--cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            5555555  55566665555555555555555555555555555552 2445555555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=196.75  Aligned_cols=178  Identities=25%  Similarity=0.192  Sum_probs=112.0

Q ss_pred             CCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEE
Q 047152          138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTL  217 (776)
Q Consensus       138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  217 (776)
                      ++++|+|++|++++..+..|.++++|++|+|++|+++   ..+.++.+++|++|++++|+++..   +..+.++++|++|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~---~l~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~L  105 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVL  105 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEECCSCCTTCCEEECCSSCCSSC---CCCTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc---cccccccccccccccccccccccc---ccccccccccccc
Confidence            3444444444444322333444444444444444442   122233444444444444444442   2344555666666


Q ss_pred             EccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEcc
Q 047152          218 SLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLS  297 (776)
Q Consensus       218 ~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  297 (776)
                      ++++|.+.+..+..+..+   .++++|++++|.+....+..+..++.  ++.+++++|++++..+..|..+++|++|+|+
T Consensus       106 ~l~~~~~~~~~~~~~~~l---~~l~~L~l~~n~l~~l~~~~~~~l~~--l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPK--LEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--CCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccceeeccccccc---cccccccccccccceecccccccccc--chhcccccccccccCccccccccccceeecc
Confidence            666666655555555555   67777777777776655555666666  7888888888887777888888999999999


Q ss_pred             CCCCCCCchhhcccCCCcEEeccCCcCCC
Q 047152          298 SNELRGIPKFLGNMCGLKILYLSGKELKG  326 (776)
Q Consensus       298 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~  326 (776)
                      +|+++.+|+.+..+++|+.|+|++|.+.-
T Consensus       181 ~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            99998898888888888888888887753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2.6e-17  Score=173.09  Aligned_cols=60  Identities=30%  Similarity=0.353  Sum_probs=41.8

Q ss_pred             CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCcc
Q 047152          518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS  586 (776)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  586 (776)
                      +++|++|++++|+++.. |.   .+++|+.|+|++|+|+ .+|..   +++|++|++++|+++ .+|..
T Consensus       283 ~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            56777888888777743 32   2567888888888887 55643   457888888888876 56653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.4e-17  Score=175.28  Aligned_cols=135  Identities=30%  Similarity=0.379  Sum_probs=78.0

Q ss_pred             cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152          267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW  346 (776)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~  346 (776)
                      +++|+|+++.++. +|+.   +++|++|++++|+++.+|+.   +.+|+.|++++|.++...     .++     +.|++
T Consensus        40 l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~lp-----~~L~~  102 (353)
T d1jl5a_          40 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----DLP-----PLLEY  102 (353)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----SCC-----TTCCE
T ss_pred             CCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhh-----hhc-----ccccc
Confidence            7777888777763 5542   45677778877777777754   346777777777665321     122     15667


Q ss_pred             EEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcc
Q 047152          347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL  426 (776)
Q Consensus       347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  426 (776)
                      |++++|.++. +|.++.+++|+.|++++|.+... +.   ....+..+.+.++......   .+..++.++.+++++|..
T Consensus       103 L~L~~n~l~~-lp~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCC
T ss_pred             cccccccccc-ccchhhhccceeecccccccccc-cc---ccccccchhhccccccccc---cccccccceecccccccc
Confidence            7777776663 34456666666666666666532 11   2344555555555432211   244455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.4e-20  Score=200.34  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=31.6

Q ss_pred             cEEEccCCCCcc----CCchhhhccccCCEEECcCCcccCcCcccc----c-CcCCCCeeeCcCceeeecCC
Q 047152          614 KILDLSSNKLGG----GVPKEIMDLVGLVALNLSRNNLTGQITPKI----G-QLKSLDFLDLSRNQFFGGIP  676 (776)
Q Consensus       614 ~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~Ls~N~l~~~~p  676 (776)
                      ++|+|++|+|+.    .+++.+..+++|++|+|++|+++......+    . +...|+.|++++|.+....+
T Consensus       372 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            445555555542    133344455666666666666653222222    1 22356666666666654433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.1e-20  Score=201.67  Aligned_cols=112  Identities=24%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             cEEEEECCCCCCCCCCCcee-ccccccCCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCCC----CCc
Q 047152           84 HVNKLDLQPIGFDSFPLRGK-ITPALLKLQHLTYLDLSRNNFSGS---SIPEFLGSLGKLSYLGLSSAEFAGP----IPH  155 (776)
Q Consensus        84 ~v~~L~L~~~~~~~~~l~g~-~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  155 (776)
                      +++.||+++     +.+++. +...+..++++++|+|++|.++..   .++..+..+++|++|||++|.++..    +..
T Consensus         3 ~l~~ld~~~-----~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQC-----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEES-----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeC-----CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            578899988     555543 234466788999999999988732   1345577889999999999988532    222


Q ss_pred             cCC-CCCCCCEEeccCCCCCCCC---CchhhccCCCCcEEEccCCCCCC
Q 047152          156 QLG-NLSRLQFLDLSFNNLFSGE---NLDWLSHLSSLIYLYLDLNDLSN  200 (776)
Q Consensus       156 ~l~-~l~~L~~L~Ls~n~~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~  200 (776)
                      .+. ...+|++|+|++|.+++.+   ....+..+++|++|++++|.+..
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            332 2357999999999886421   12356778999999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.6e-17  Score=160.45  Aligned_cols=189  Identities=22%  Similarity=0.270  Sum_probs=103.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152          108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS  187 (776)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  187 (776)
                      ++.+.+|++|++.+|.++.  ++ .+..+++|++|++++|++++..|  +..+++|+++++++|.++   ..+.++++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~---~i~~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS---CCGGGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc---cccccccccc
Confidence            3455666777777776663  32 36667777777777776664322  666666667766666653   2344556666


Q ss_pred             CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152          188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV  267 (776)
Q Consensus       188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L  267 (776)
                      |++++++++...+.    ..+...+.++.+.++.+.+....+                             +...++  +
T Consensus       109 L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------~~~~~~--L  153 (227)
T d1h6ua2         109 IKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISP-----------------------------LAGLTN--L  153 (227)
T ss_dssp             CCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG-----------------------------GGGCTT--C
T ss_pred             cccccccccccccc----chhccccchhhhhchhhhhchhhh-----------------------------hccccc--c
Confidence            66666666555543    123444555555555544433221                             233333  4


Q ss_pred             CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152          268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL  347 (776)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L  347 (776)
                      +.|++++|.+.+..  .++++++|++|++++|++++++. +.++++|++|++++|++++..+  +..++      +|++|
T Consensus       154 ~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~------~L~~L  222 (227)
T d1h6ua2         154 QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS------NLFIV  222 (227)
T ss_dssp             CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT------TCCEE
T ss_pred             ccccccccccccch--hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCC------CCCEE
Confidence            45555554444321  25555666666666666665543 5556666666666666654432  44444      66666


Q ss_pred             Ecc
Q 047152          348 HLS  350 (776)
Q Consensus       348 ~L~  350 (776)
                      +++
T Consensus       223 ~ls  225 (227)
T d1h6ua2         223 TLT  225 (227)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5e-17  Score=159.40  Aligned_cols=205  Identities=23%  Similarity=0.294  Sum_probs=140.2

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      ..++++.+.+++.   ..+..+.+|++|++.+|.++. + ..+.++++|++|++++|++..   ...+.++++|++++++
T Consensus        22 ~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~---~~~l~~l~~l~~l~~~   93 (227)
T d1h6ua2          22 IKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITD---LAPLKNLTKITELELS   93 (227)
T ss_dssp             HHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC---CGGGTTCCSCCEEECC
T ss_pred             HHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeec---cccccccccccccccc
Confidence            3455666666542   234556677777777777763 4 346777777777777777642   2336666666666666


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS  274 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~  274 (776)
                      +|.++.++    .+.++++|++++++++...+..                             .+.....  ++.+.++.
T Consensus        94 ~n~~~~i~----~l~~l~~L~~l~l~~~~~~~~~-----------------------------~~~~~~~--~~~l~~~~  138 (227)
T d1h6ua2          94 GNPLKNVS----AIAGLQSIKTLDLTSTQITDVT-----------------------------PLAGLSN--LQVLYLDL  138 (227)
T ss_dssp             SCCCSCCG----GGTTCTTCCEEECTTSCCCCCG-----------------------------GGTTCTT--CCEEECCS
T ss_pred             cccccccc----cccccccccccccccccccccc-----------------------------hhccccc--hhhhhchh
Confidence            66655532    2444555555555554433321                             1222333  66677777


Q ss_pred             CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152          275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI  354 (776)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l  354 (776)
                      +.+...  ..+..+++|++|++++|.+.+.+. ++++++|++|++++|++++..  .+..++      +|++|++++|++
T Consensus       139 ~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~--~l~~l~------~L~~L~Ls~N~l  207 (227)
T d1h6ua2         139 NQITNI--SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS--PLASLP------NLIEVHLKNNQI  207 (227)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCT------TCCEEECTTSCC
T ss_pred             hhhchh--hhhccccccccccccccccccchh-hcccccceecccCCCccCCCh--hhcCCC------CCCEEECcCCcC
Confidence            766543  347788999999999999988654 889999999999999998753  367777      999999999999


Q ss_pred             cccCCCccCCCCCCEEeccC
Q 047152          355 TGSMPNLGEFSSLKQLNLEN  374 (776)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~  374 (776)
                      ++. +.+.++++|++|++++
T Consensus       208 t~i-~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         208 SDV-SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CBC-GGGTTCTTCCEEEEEE
T ss_pred             CCC-cccccCCCCCEEEeeC
Confidence            864 4589999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=7.6e-18  Score=160.45  Aligned_cols=174  Identities=22%  Similarity=0.258  Sum_probs=110.9

Q ss_pred             CeEeccCCcccccCCC-CCCCCcEEEccCCccccC-CCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCc
Q 047152          501 PGIDISSNHFEGPIPP-LPSNATSLNLSKNKFSGS-ISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN  578 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  578 (776)
                      +.++.++++++. +|. .+.++++|++++|+|++. .+..|..+++|++|+|++|.+.+..+..+..+++|++|+|++|+
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCc-cCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            455666666653 333 346777777777777653 34566777777777777777777777777777777777777777


Q ss_pred             ccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCc
Q 047152          579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQL  658 (776)
Q Consensus       579 l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  658 (776)
                      ++...|..|.++++|                    ++|+|++|+|++..|+.|..+++|++|+|++|.+.... ....-.
T Consensus        90 l~~l~~~~F~~l~~L--------------------~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~  148 (192)
T d1w8aa_          90 IKEISNKMFLGLHQL--------------------KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFA  148 (192)
T ss_dssp             CCEECSSSSTTCTTC--------------------CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHH
T ss_pred             ccccCHHHHhCCCcc--------------------cccccCCccccccCHHHhcCCccccccccccccccccc-chHHHh
Confidence            776666666666655                    56677777777666666777777777777777776322 211122


Q ss_pred             CCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecC
Q 047152          659 KSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI  699 (776)
Q Consensus       659 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  699 (776)
                      ..++.+.+..|.+....|..+   ..++.++++.|.+.|..
T Consensus       149 ~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         149 EWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCC
T ss_pred             hhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCC
Confidence            335555666666665555443   33455666666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.4e-17  Score=156.92  Aligned_cols=86  Identities=24%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             cEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152          614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN  693 (776)
Q Consensus       614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  693 (776)
                      +.|+|++|++.+..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            44555555555555555555555555555555555444455555555555555555555555555555555555555555


Q ss_pred             cceecC
Q 047152          694 NLSGKI  699 (776)
Q Consensus       694 ~l~g~i  699 (776)
                      ++.+.+
T Consensus       137 ~~~~~~  142 (192)
T d1w8aa_         137 PFNCNC  142 (192)
T ss_dssp             CBCCSG
T ss_pred             cccccc
Confidence            555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.5e-16  Score=151.02  Aligned_cols=163  Identities=26%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             CCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCE
Q 047152          137 GKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTT  216 (776)
Q Consensus       137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  216 (776)
                      .+|++|++++|.+++. + .+..+++|++|++++|++.+   .+.++.+++|++|++++|++++++    .+.++++|+.
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~---l~~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD---IKPLANLKNLGWLFLDENKVKDLS----SLKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSCCCCGG----GGTTCTTCCE
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC---ccccccCccccccccccccccccc----cccccccccc
Confidence            3444444444444421 1 24444444444444444431   222344444555555555444421    2444555555


Q ss_pred             EEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEc
Q 047152          217 LSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDL  296 (776)
Q Consensus       217 L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (776)
                      |++++|.+...  ..+..+   ++++.+++++|.+++  +..+..+++  |+.+++++|++++..  .+.++++|++|++
T Consensus       117 L~l~~~~~~~~--~~l~~l---~~l~~l~~~~n~l~~--~~~~~~l~~--L~~l~l~~n~l~~i~--~l~~l~~L~~L~L  185 (210)
T d1h6ta2         117 LSLEHNGISDI--NGLVHL---PQLESLYLGNNKITD--ITVLSRLTK--LDTLSLEDNQISDIV--PLAGLTKLQNLYL  185 (210)
T ss_dssp             EECTTSCCCCC--GGGGGC---TTCCEEECCSSCCCC--CGGGGGCTT--CSEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             ccccccccccc--cccccc---ccccccccccccccc--ccccccccc--ccccccccccccccc--cccCCCCCCEEEC
Confidence            55555544321  223333   555555555555543  222334444  555555555555422  2556666666666


Q ss_pred             cCCCCCCCchhhcccCCCcEEecc
Q 047152          297 SSNELRGIPKFLGNMCGLKILYLS  320 (776)
Q Consensus       297 ~~n~l~~ip~~l~~l~~L~~L~Ls  320 (776)
                      ++|.++++| .+..+++|++|+++
T Consensus       186 s~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCh-hhcCCCCCCEEEcc
Confidence            666666664 35666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=9.4e-16  Score=147.92  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=131.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      .+..|++|++++|.+++  ++ .+..+++|++|++++|++++. + .++++++|++|++++|++.   ..+.+.++++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~---~l~~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK---DLSSLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC---CGGGGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc---cccccccccccc
Confidence            46788889999998874  33 377888999999999988853 3 3678899999999998885   345688889999


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR  269 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~  269 (776)
                      .|++++|.+...    ..+..+++++.+++++|.+++.  ..+..+   ++|+++++++|++++. + .+.++++  |++
T Consensus       116 ~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~--~~~~~l---~~L~~l~l~~n~l~~i-~-~l~~l~~--L~~  182 (210)
T d1h6ta2         116 SLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDI-V-PLAGLTK--LQN  182 (210)
T ss_dssp             EEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCCCC-G-GGTTCTT--CCE
T ss_pred             cccccccccccc----cccccccccccccccccccccc--cccccc---cccccccccccccccc-c-cccCCCC--CCE
Confidence            999999888764    3477888999999999988753  345556   8899999999998763 3 3778888  999


Q ss_pred             EEccCCccccCcchhhcCCCCCCEEEccC
Q 047152          270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSS  298 (776)
Q Consensus       270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  298 (776)
                      |++++|+++. ++ .+..+++|++|+|++
T Consensus       183 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999999875 44 589999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.3e-15  Score=145.54  Aligned_cols=162  Identities=25%  Similarity=0.391  Sum_probs=77.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152          110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI  189 (776)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  189 (776)
                      .++++++|++++|.++.  ++ .+..+++|++|++++|++++..|  ++++++|++|++++|.+.   ..+.++++++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC---CCGGGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc---cccccccccccc
Confidence            34555555555555542  22 24455555555555555553221  455555555555555442   122344444444


Q ss_pred             EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152          190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR  269 (776)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~  269 (776)
                      +|+++++.....+    .+..+                           ++|+.|++++|++.. + +.+..+++  ++.
T Consensus       110 ~L~l~~~~~~~~~----~~~~l---------------------------~~L~~L~l~~n~l~~-~-~~l~~~~~--L~~  154 (199)
T d2omxa2         110 GLTLFNNQITDID----PLKNL---------------------------TNLNRLELSSNTISD-I-SALSGLTS--LQQ  154 (199)
T ss_dssp             EEECCSSCCCCCG----GGTTC---------------------------TTCSEEECCSSCCCC-C-GGGTTCTT--CSE
T ss_pred             ccccccccccccc----ccchh---------------------------hhhHHhhhhhhhhcc-c-cccccccc--ccc
Confidence            4444444443321    12333                           445555555544432 1 12333344  555


Q ss_pred             EEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEE
Q 047152          270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKIL  317 (776)
Q Consensus       270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L  317 (776)
                      |++.+|++++..  .++++++|++|++++|++++++ .+..+++|++|
T Consensus       155 L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         155 LNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             cccccccccCCc--cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            555555554321  2556666666666666666654 35556666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.9e-15  Score=143.15  Aligned_cols=147  Identities=31%  Similarity=0.438  Sum_probs=117.6

Q ss_pred             CcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCC
Q 047152           83 GHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSR  162 (776)
Q Consensus        83 ~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  162 (776)
                      .+++.|++++++     +.. + +.+..+++|++|++++|.+++  ++. ++++++|++|++++|.+. .++ .++++++
T Consensus        40 ~~l~~L~l~~~~-----i~~-l-~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~  107 (199)
T d2omxa2          40 DQVTTLQADRLG-----IKS-I-DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTN  107 (199)
T ss_dssp             TTCCEEECTTSC-----CCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTT
T ss_pred             cCCCEEECCCCC-----CCC-c-cccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccc-ccc-ccccccc
Confidence            468899999953     332 2 347889999999999999985  343 899999999999999987 444 4889999


Q ss_pred             CCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCcc
Q 047152          163 LQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLE  242 (776)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~  242 (776)
                      |++|++++|.+.   ....+.++++|+.|++++|++...    ..+..+++|++|++++|++++..  .++++   ++|+
T Consensus       108 L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~~l~~~~~L~~L~l~~n~l~~l~--~l~~l---~~L~  175 (199)
T d2omxa2         108 LTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDI----SALSGLTSLQQLNFSSNQVTDLK--PLANL---TTLE  175 (199)
T ss_dssp             CSEEECCSSCCC---CCGGGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCG--GGTTC---TTCC
T ss_pred             cccccccccccc---cccccchhhhhHHhhhhhhhhccc----ccccccccccccccccccccCCc--cccCC---CCCC
Confidence            999999999874   345688999999999999998874    34778888999999888887653  25555   7777


Q ss_pred             EEEcCCCCCCC
Q 047152          243 VIDLTENNLTN  253 (776)
Q Consensus       243 ~L~Ls~n~l~~  253 (776)
                      +|++++|++++
T Consensus       176 ~L~ls~N~i~~  186 (199)
T d2omxa2         176 RLDISSNKVSD  186 (199)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCCCCC
Confidence            77777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.4e-16  Score=153.09  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             CEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC--ccCCCCCCE
Q 047152          292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQ  369 (776)
Q Consensus       292 ~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~  369 (776)
                      +.++.++..++.+|+.+.  +++++|++++|.++...+..|.+++      +|++|++++|.+...++.  +..++.+++
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~------~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFG------DLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCT------TCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccc------hhhhhhhccccccceeecccccccccccc
Confidence            345555555555554332  3455555555555444444444444      555555555555443322  445555555


Q ss_pred             EeccC-ccccccchhcccCCCCCcEEECCCcccc
Q 047152          370 LNLEN-NLLNGTIHKSIGQLFKLEMLKLNGNSLG  402 (776)
Q Consensus       370 L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~N~l~  402 (776)
                      +++.. |.+....+..+..+++|+++++++|.+.
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccchhhhc
Confidence            55432 3444444455555555666666555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-15  Score=149.40  Aligned_cols=209  Identities=19%  Similarity=0.131  Sum_probs=148.1

Q ss_pred             CeEeccCCcccccCCCC-CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEeccC-C
Q 047152          501 PGIDISSNHFEGPIPPL-PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLAN-N  577 (776)
Q Consensus       501 ~~l~l~~n~l~g~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~-N  577 (776)
                      +.++.++..++ .+|.. +.++++|++++|+++...+..|.++++|++|++++|.+...++ ..|.+++.++++++.. |
T Consensus        11 ~~i~c~~~~l~-~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCC-CcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            45566666666 34433 5678888888888887777778888888888888888876543 4577888888888754 6


Q ss_pred             cccccCCccccccCCCcEEecCCCccccc-----ccccccccEEEccCCCCccCCchhhhccc-cCCEEECcCCcccCcC
Q 047152          578 NFFGKIPNSMGFLHNIRSLSLYNRSQYEY-----KSTLGLVKILDLSSNKLGGGVPKEIMDLV-GLVALNLSRNNLTGQI  651 (776)
Q Consensus       578 ~l~~~~p~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~  651 (776)
                      ++....+..|..+++|++++++++.+...     ...+..++.+..+++.+....+..+..++ .++.|++++|+++. +
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i  168 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I  168 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-c
Confidence            77777777888888888888887654322     23455666677778888766666666654 78889999999984 5


Q ss_pred             cccccCcCCCCee-eCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccc
Q 047152          652 TPKIGQLKSLDFL-DLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVY  713 (776)
Q Consensus       652 p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  713 (776)
                      +.......+++++ ++++|+++...+..|.++++|++|++++|+++ .+|.. .++.+..+..
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~-~~~~l~~L~~  229 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKKLRA  229 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSS-SCTTCCEEES
T ss_pred             ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHH-HHcCCccccc
Confidence            5555555665554 57788888554566888999999999999987 56653 3455544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=153.25  Aligned_cols=201  Identities=21%  Similarity=0.179  Sum_probs=95.4

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCC-CCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152          114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGP-IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY  192 (776)
Q Consensus       114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  192 (776)
                      +..+.++...+..  .........+|++||+++|.+++. ++..+.++++|++|++++|.+.+ ..+..++++++|++|+
T Consensus        25 ~~~lrl~~~~~~~--~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECS--CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEE
T ss_pred             ceEeecccccccc--chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc-HHHHHHhcCCCCcCcc
Confidence            4455555544432  112223345667777766665533 23335566666677666666543 3344556666666666


Q ss_pred             ccCC-CCCCcchhhHhhcCCCCCCEEEccCCC-CCCC-CchhhhcCCCCCCccEEEcCCC--CCCCC-chhhHhhcCCCC
Q 047152          193 LDLN-DLSNFSNWVQLLSKLHSLTTLSLYSCD-LPPI-IPSSLLNLNSSNSLEVIDLTEN--NLTNS-VYPWLFNVSSSL  266 (776)
Q Consensus       193 Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~~~~L~~L~Ls~n--~l~~~-~~~~l~~~~~~~  266 (776)
                      ++++ .+++ ..+...+.++++|++|++++|. ++.. ....+...  .++|+.|+++++  .++.. +.....++++  
T Consensus       102 Ls~c~~itd-~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~--  176 (284)
T d2astb2         102 LSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV--SETITQLNLSGYRKNLQKSDLSTLVRRCPN--  176 (284)
T ss_dssp             CTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS--CTTCCEEECCSCGGGSCHHHHHHHHHHCTT--
T ss_pred             ccccccccc-cccchhhHHHHhccccccccccccccccchhhhccc--ccccchhhhccccccccccccccccccccc--
Confidence            6664 3332 1233334556666666666653 2211 11122221  145666666553  22221 1112233444  


Q ss_pred             cCEEEccCC-ccccCcchhhcCCCCCCEEEccCC-CCCC-CchhhcccCCCcEEeccCC
Q 047152          267 VDRISLPSN-QLQGSIPEAFGRMVSLRYLDLSSN-ELRG-IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       267 L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-ip~~l~~l~~L~~L~Ls~n  322 (776)
                      |++|++++| .+++.....+.++++|++|++++| .+++ ....++++++|++|+++++
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555555543 244444444555555555555553 3333 2233444555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-15  Score=153.43  Aligned_cols=212  Identities=18%  Similarity=0.196  Sum_probs=152.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCC-CCCCCCchhhccCCC
Q 047152          109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN-LFSGENLDWLSHLSS  187 (776)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~  187 (776)
                      .....|++||++++.++...++..+.++++|++|+|++|.+++..+..++++++|++|++++|. +++.+......++++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3456899999999988754456668889999999999999888778888899999999999964 432111223467899


Q ss_pred             CcEEEccCCC-CCCcchhhHhhc-CCCCCCEEEccCCC--CCCC-CchhhhcCCCCCCccEEEcCCC-CCCCCchhhHhh
Q 047152          188 LIYLYLDLND-LSNFSNWVQLLS-KLHSLTTLSLYSCD--LPPI-IPSSLLNLNSSNSLEVIDLTEN-NLTNSVYPWLFN  261 (776)
Q Consensus       188 L~~L~Ls~n~-l~~~~~~~~~l~-~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~  261 (776)
                      |++|+++++. +++ ..+...+. .+++|+.|+++++.  ++.. +.....++   ++|++|++++| .+++..+..+.+
T Consensus       123 L~~L~ls~c~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~---~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         123 LDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---PNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---TTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccccccccc-ccchhhhcccccccchhhhccccccccccccccccccc---ccccccccccccCCCchhhhhhcc
Confidence            9999999864 443 23333343 45789999998763  3322 22333456   89999999986 477778888888


Q ss_pred             cCCCCcCEEEccCC-ccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccCCcCCCccch
Q 047152          262 VSSSLVDRISLPSN-QLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELKGQLSE  330 (776)
Q Consensus       262 ~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~  330 (776)
                      +++  |++|++++| .+++.....++++++|++|+++++ +++  ++.....+++|+   +..+.++...+.
T Consensus       199 ~~~--L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~  264 (284)
T d2astb2         199 LNY--LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARP  264 (284)
T ss_dssp             CTT--CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCS
T ss_pred             cCc--CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCC
Confidence            888  999999996 577666677889999999999988 443  433334555554   355555554433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=6.1e-15  Score=154.23  Aligned_cols=140  Identities=22%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             CCccEEEcCCCCCCCCch----hhHhhcCCCCcCEEEccCCccccC-----cchhhcCCCCCCEEEccCCCCCC-----C
Q 047152          239 NSLEVIDLTENNLTNSVY----PWLFNVSSSLVDRISLPSNQLQGS-----IPEAFGRMVSLRYLDLSSNELRG-----I  304 (776)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~----~~l~~~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~-----i  304 (776)
                      +.|+.+++++|.+.....    ..+...+.  ++.|+++.|++...     +...+..+++|+.|++++|.++.     +
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~--L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRL--LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTT--CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhh--hcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            455555555555443211    12223333  55555555544321     12234445555555555555433     2


Q ss_pred             chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCcccccc----
Q 047152          305 PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGT----  380 (776)
Q Consensus       305 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~----  380 (776)
                      ...+..+++|++|++++|.+++.....+...-.                       -...+.|++|++++|.++..    
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~-----------------------~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFS-----------------------KLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-----------------------TCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhh-----------------------hccCCCCCEEECCCCcCChHHHHH
Confidence            233445555555555555554432222221100                       01234566677777666542    


Q ss_pred             chhccc-CCCCCcEEECCCccccc
Q 047152          381 IHKSIG-QLFKLEMLKLNGNSLGG  403 (776)
Q Consensus       381 ~~~~l~-~l~~L~~L~L~~N~l~~  403 (776)
                      +...+. +.++|++|++++|++..
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHccCCCCCEEECCCCcCCC
Confidence            222332 45677777887777753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=4.6e-14  Score=147.43  Aligned_cols=250  Identities=18%  Similarity=0.139  Sum_probs=126.4

Q ss_pred             ccCCCCCCCCEEeccCCCCCCCCCc----hhhccCCCCcEEEccCCCCCCcc--------hhhHhhcCCCCCCEEEccCC
Q 047152          155 HQLGNLSRLQFLDLSFNNLFSGENL----DWLSHLSSLIYLYLDLNDLSNFS--------NWVQLLSKLHSLTTLSLYSC  222 (776)
Q Consensus       155 ~~l~~l~~L~~L~Ls~n~~~~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~--------~~~~~l~~l~~L~~L~L~~n  222 (776)
                      ..+.+...|++|+|++|.+.. ...    ..+...++|+.|+++++......        .+...+..+++|++|++++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~-~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGT-EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECH-HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCCcCCH-HHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            344556666667776666532 111    12445566666666555433221        12233444555555555555


Q ss_pred             CCCCCCch----hhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccC
Q 047152          223 DLPPIIPS----SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSS  298 (776)
Q Consensus       223 ~l~~~~~~----~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  298 (776)
                      .+......    .+...   ++|++|++++|.+.......++..    +..+         .........+.|+.+++++
T Consensus       104 ~i~~~~~~~l~~~l~~~---~~L~~L~l~~n~l~~~~~~~l~~~----l~~~---------~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKH---TPLEHLYLHNNGLGPQAGAKIARA----LQEL---------AVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             CCCTTTHHHHHHHHHHC---TTCCEEECCSSCCHHHHHHHHHHH----HHHH---------HHHHHHHTCCCCCEEECCS
T ss_pred             ccccccccchhhhhccc---ccchheeccccccccccccccccc----cccc---------ccccccccCcccceeeccc
Confidence            55443221    11222   445555555554431111111100    0000         0001123456677777777


Q ss_pred             CCCCC-----CchhhcccCCCcEEeccCCcCCCcc-----chHHhhccCCCcCCCccEEEcccccccccC-----CCccC
Q 047152          299 NELRG-----IPKFLGNMCGLKILYLSGKELKGQL-----SEFIQDLSSGCTKNSLEWLHLSSNEITGSM-----PNLGE  363 (776)
Q Consensus       299 n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~-----~~l~~  363 (776)
                      |.++.     +...+...+.|++|++++|.+....     ...+...+      +|+.|++++|.++...     ..+..
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~------~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ------ELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT------TCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchh------hhcccccccccccccccccccccccc
Confidence            77654     3344556677777777777765421     11122223      6777777777665321     12566


Q ss_pred             CCCCCEEeccCccccccchhc----cc--CCCCCcEEECCCccccccccHH---hh-hCCCCCcEEECCCCccc
Q 047152          364 FSSLKQLNLENNLLNGTIHKS----IG--QLFKLEMLKLNGNSLGGVISEA---LF-SNLSRLAALDLADNSLT  427 (776)
Q Consensus       364 l~~L~~L~Ls~n~l~~~~~~~----l~--~l~~L~~L~L~~N~l~~~~~~~---~~-~~l~~L~~L~Ls~n~l~  427 (776)
                      +++|++|++++|.+++.....    +.  ..+.|++|++++|.++......   .+ .++++|++|++++|++.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            777788888888776542222    22  2356788888888775422111   12 24667777777777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.3e-13  Score=119.74  Aligned_cols=103  Identities=27%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152          115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD  194 (776)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  194 (776)
                      |+|||++|+++.  ++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.+..   .+.++++++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---VDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---cCccccccccCeEECC
Confidence            467777777762  44 3666777777777777776 456666777777777777777642   2346666777777777


Q ss_pred             CCCCCCcchhhHhhcCCCCCCEEEccCCCCC
Q 047152          195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP  225 (776)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  225 (776)
                      +|+++..+.+ ..+..+++|++|++++|.++
T Consensus        74 ~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAI-QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCc-hhhcCCCCCCEEECCCCcCC
Confidence            7766665432 34566666666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.6e-14  Score=127.70  Aligned_cols=131  Identities=20%  Similarity=0.203  Sum_probs=100.1

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccC
Q 047152          106 PALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHL  185 (776)
Q Consensus       106 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  185 (776)
                      +.+.+...+++|||++|+|+.  ++..+..+++|++|||++|+++ .++ .+..+++|++|++++|++.. ..+..+..+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l   86 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR-IGEGLDQAL   86 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHC
T ss_pred             HhccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccC-CCccccccc
Confidence            346777889999999999984  6776778899999999999998 453 58889999999999999864 333456778


Q ss_pred             CCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCC---chhhhcCCCCCCccEEE
Q 047152          186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPII---PSSLLNLNSSNSLEVID  245 (776)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~~~~L~~L~  245 (776)
                      ++|++|++++|+++..+. ...+..+++|++|++++|.++...   +..+..+   ++|++||
T Consensus        87 ~~L~~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l---p~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV---PQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC---TTCSEET
T ss_pred             cccccceecccccccccc-ccccccccccchhhcCCCccccccchHHHHHHHC---CCcCeeC
Confidence            999999999998887644 245778888888888888775432   2345555   6777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.1e-13  Score=118.40  Aligned_cols=120  Identities=29%  Similarity=0.310  Sum_probs=98.2

Q ss_pred             EEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEE
Q 047152           87 KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL  166 (776)
Q Consensus        87 ~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  166 (776)
                      .|+|++     +.++ .++ .+.++++|++|++++|.++  .+|..++.+++|++|++++|++++ +| .++++++|++|
T Consensus         2 ~L~Ls~-----n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L   70 (124)
T d1dcea3           2 VLHLAH-----KDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL   70 (124)
T ss_dssp             EEECTT-----SCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             EEEcCC-----CCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeE
Confidence            578888     5565 333 5899999999999999998  478889999999999999999984 55 58999999999


Q ss_pred             eccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhH-hhcCCCCCCEE
Q 047152          167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQ-LLSKLHSLTTL  217 (776)
Q Consensus       167 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~l~~L~~L  217 (776)
                      ++++|++.....+..++.+++|++|++++|.++..+.... ....+++|+.|
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999875556789999999999999999977544332 33456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=126.17  Aligned_cols=125  Identities=20%  Similarity=0.225  Sum_probs=81.4

Q ss_pred             cCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEcc
Q 047152          540 SLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLS  619 (776)
Q Consensus       540 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls  619 (776)
                      .++.++++|+|++|+|+ .++..+..+++|+.|++++|+++.. + .+..+++|                    ++|+++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L--------------------~~L~ls   71 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRL--------------------KTLLVN   71 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSC--------------------CEEECC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcch--------------------hhhhcc
Confidence            34556777777777776 4455566677777777777777632 2 24444444                    667777


Q ss_pred             CCCCccCCchhhhccccCCEEECcCCcccCcCc--ccccCcCCCCeeeCcCceeeecCCc----cCcCCCCCCeee
Q 047152          620 SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT--PKIGQLKSLDFLDLSRNQFFGGIPS----SLSQLSGLSVMD  689 (776)
Q Consensus       620 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~  689 (776)
                      +|+++...+..+..+++|+.|++++|+++. ++  ..+..+++|++|++++|.++. .|.    .+..+++|++||
T Consensus        72 ~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          72 NNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            777775444455667777777777777763 33  356677777777777777763 332    356667777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.9e-12  Score=113.60  Aligned_cols=105  Identities=22%  Similarity=0.252  Sum_probs=46.3

Q ss_pred             EEccCCCCccCCchhhhccccCCEEECcCC-cccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCc
Q 047152          616 LDLSSNKLGGGVPKEIMDLVGLVALNLSRN-NLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNN  694 (776)
Q Consensus       616 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  694 (776)
                      ++++++.+. .+|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|++|++++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            444444444 33444444444444544433 2443333444444455555555555444444444444445555555554


Q ss_pred             ceecCCCC-CcccccccccccCCCCCCCC
Q 047152          695 LSGKIPLG-TQLQSFNELVYAGNPELCGL  722 (776)
Q Consensus       695 l~g~iP~~-~~~~~~~~~~~~gN~~lc~~  722 (776)
                      ++ .+|.+ -....+..+.+.|||+-|+|
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             Cc-ccChhhhccccccccccCCCcccCCc
Confidence            44 22222 11223334444455444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-11  Score=111.41  Aligned_cols=112  Identities=16%  Similarity=0.024  Sum_probs=86.5

Q ss_pred             CCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC-CCccCCchhhhccccCCEEECcC
Q 047152          566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN-KLGGGVPKEIMDLVGLVALNLSR  644 (776)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~  644 (776)
                      +...+.++++++.+. ..|..+..+++|                    ++|++++| .++...+..|.++++|+.|+|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l--------------------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~   65 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENL--------------------TELYIENQQHLQHLELRDLRGLGELRNLTIVK   65 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCC--------------------SEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             cCCCCeEEecCCCCc-cCcccccCcccc--------------------CeeecCCCccccccCchhhccccccCcceeec
Confidence            344556777777766 445555555555                    67788665 48866677899999999999999


Q ss_pred             CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecC
Q 047152          645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI  699 (776)
Q Consensus       645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  699 (776)
                      |+|+...|..|..+++|++|+|++|+++...+..+. ..+|+.|++++|++.+.+
T Consensus        66 N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCG
T ss_pred             cccCCcccccccccccccceeccCCCCcccChhhhc-cccccccccCCCcccCCc
Confidence            999977788899999999999999999954444454 457999999999998754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=7e-13  Score=125.63  Aligned_cols=118  Identities=23%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCC
Q 047152          559 LPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV  638 (776)
Q Consensus       559 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  638 (776)
                      ++..+..+++|++|+|++|+++. ++ .+..+++|                    ++|+|++|.++ .+|..+..++.|+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L--------------------~~L~Ls~N~i~-~i~~~~~~~~~L~   96 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL--------------------RILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTC--------------------CEEECCEEEEC-SCSSHHHHHHHCC
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccc--------------------cChhhcccccc-ccccccccccccc
Confidence            44556666667777777766653 33 35545544                    55566666665 4454445555666


Q ss_pred             EEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC-ccCcCCCCCCeeeCCCCcceecCCC
Q 047152          639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP-SSLSQLSGLSVMDLSYNNLSGKIPL  701 (776)
Q Consensus       639 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~iP~  701 (776)
                      +|++++|+++. + +.+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+.
T Consensus        97 ~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_          97 ELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            66666666663 2 235666666666666666653321 3456666677777777766654443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2e-12  Score=122.40  Aligned_cols=113  Identities=27%  Similarity=0.340  Sum_probs=61.3

Q ss_pred             cchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC
Q 047152          281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN  360 (776)
Q Consensus       281 ~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~  360 (776)
                      ++..+..+++|++|+|++|+++.++ .+..+++|++|++++|.++.. +.....++      +|++|++++|+++. ++.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~------~L~~L~l~~N~i~~-l~~  110 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVAD------TLEELWISYNQIAS-LSG  110 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSC-SSHHHHHH------HCCEEECSEEECCC-HHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccc-cccccccc------cccccccccccccc-ccc
Confidence            3445666666666666666666654 355666666666666665532 22333333      46666666666553 233


Q ss_pred             ccCCCCCCEEeccCccccccch-hcccCCCCCcEEECCCcccc
Q 047152          361 LGEFSSLKQLNLENNLLNGTIH-KSIGQLFKLEMLKLNGNSLG  402 (776)
Q Consensus       361 l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~  402 (776)
                      +..+++|++|++++|++++... ..+..+++|+.|++++|++.
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            5555556666666665553221 34555555666666555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.7e-08  Score=86.97  Aligned_cols=80  Identities=23%  Similarity=0.152  Sum_probs=39.6

Q ss_pred             cccccEEEccCCCCccC--CchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc-------Cc
Q 047152          610 LGLVKILDLSSNKLGGG--VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-------LS  680 (776)
Q Consensus       610 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~  680 (776)
                      ++.|++|+|++|+|+..  ++..+..+++|+.|+|++|+++...+-.......|+.|++++|.+.......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            34445566666666532  2234455566666666666665322212223334566666666555433321       33


Q ss_pred             CCCCCCeee
Q 047152          681 QLSGLSVMD  689 (776)
Q Consensus       681 ~l~~L~~L~  689 (776)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            455555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.5e-08  Score=86.66  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             CCCCCCEEeccCCCCCCCCC-chhhccCCCCcEEEccCCCCCCc
Q 047152          159 NLSRLQFLDLSFNNLFSGEN-LDWLSHLSSLIYLYLDLNDLSNF  201 (776)
Q Consensus       159 ~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~  201 (776)
                      ++++|++|+|++|+++.... ...+..+++|+.|++++|+++.+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l  106 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  106 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc
Confidence            34455555555555443211 12233444444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=1.5e-05  Score=71.69  Aligned_cols=41  Identities=15%  Similarity=0.019  Sum_probs=17.9

Q ss_pred             cCCCCcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCCC
Q 047152          184 HLSSLIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCDL  224 (776)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l  224 (776)
                      ..+.|++|++++|.++..  ..+...+...++|++|++++|.+
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            334444444444444331  22333444445555555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=4e-05  Score=68.86  Aligned_cols=15  Identities=13%  Similarity=0.080  Sum_probs=7.5

Q ss_pred             hCCCCCcEEECCCCc
Q 047152          411 SNLSRLAALDLADNS  425 (776)
Q Consensus       411 ~~l~~L~~L~Ls~n~  425 (776)
                      ...+.|+.|+++.+.
T Consensus       128 ~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         128 EENESLLRVGISFAS  142 (167)
T ss_dssp             HHCSSCCEEECCCCC
T ss_pred             HhCCCccEeeCcCCC
Confidence            334555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=0.00014  Score=65.14  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=22.1

Q ss_pred             cCCCCCCEEEccC-CCCCC-----CchhhcccCCCcEEeccCCcCCCc
Q 047152          286 GRMVSLRYLDLSS-NELRG-----IPKFLGNMCGLKILYLSGKELKGQ  327 (776)
Q Consensus       286 ~~l~~L~~L~L~~-n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~  327 (776)
                      .+.++|++|++++ +.++.     +-..+...++|++|++++|.++..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~   61 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP   61 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH
Confidence            4455666666665 33433     223344555666666666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.0004  Score=62.00  Aligned_cols=39  Identities=23%  Similarity=0.124  Sum_probs=18.5

Q ss_pred             hhcCCCCCCEEEcc--CCCCCC-----CchhhcccCCCcEEeccCC
Q 047152          284 AFGRMVSLRYLDLS--SNELRG-----IPKFLGNMCGLKILYLSGK  322 (776)
Q Consensus       284 ~l~~l~~L~~L~L~--~n~l~~-----ip~~l~~l~~L~~L~Ls~n  322 (776)
                      .+...++|+.++|+  +|.+..     +...+...++|+.|+++.+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            34445555554443  334433     2334445555555555544