Citrus Sinensis ID: 047159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
ELLPPMENFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
cccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccc
ccccccccHHHccHcccHHHHEEEEEHHHHHHEEccHccEEEEEcccHccEEEEEccccHHHHHHHHHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccc
ellppmenfmsnqtditpqmigiCHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
ellppmenFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
ELLPPMENFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHmlrmeklmlkklkFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
***************ITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVD***
****PME*FMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTS****A**
ELLPPMENFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
***PPMENFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYI*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ELLPPMENFMSNQTDITPQMIGICHSCQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRYTSYIVDAEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query137 2.2.26 [Sep-21-2011]
Q9SA32396 Putative cyclin-B3-1 OS=A no no 0.912 0.315 0.465 3e-30
Q9SFW6431 Cyclin-B2-4 OS=Arabidopsi no no 0.883 0.280 0.4 7e-20
P46277428 G2/mitotic-specific cycli N/A no 0.854 0.273 0.404 8e-20
Q9LDM4429 Cyclin-B2-3 OS=Arabidopsi no no 0.883 0.282 0.390 2e-19
P30278328 G2/mitotic-specific cycli N/A no 0.846 0.353 0.377 2e-18
P46278434 G2/mitotic-specific cycli N/A no 0.846 0.267 0.377 2e-18
Q0D9C7419 Cyclin-B2-2 OS=Oryza sati yes no 0.861 0.281 0.360 1e-17
A2YH60419 Cyclin-B2-2 OS=Oryza sati N/A no 0.861 0.281 0.360 1e-17
Q7XSJ6420 Cyclin-B2-1 OS=Oryza sati no no 0.854 0.278 0.357 1e-17
Q01J96423 Cyclin-B2-1 OS=Oryza sati N/A no 0.854 0.276 0.357 2e-17
>sp|Q9SA32|CCB31_ARATH Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 101/176 (57%), Gaps = 51/176 (28%)

Query: 2   LLPPMENFMSNQTDITPQMIGICHSC--QVHLKFDLMAETLYLMVTL------------- 46
           L P + +++S   +++P   GI  +   +VH KFDLM ETLYL + L             
Sbjct: 157 LNPALGHYLSAHAEVSPVTRGILINWLIEVHFKFDLMHETLYLTMDLLDRYLSQVPIHKN 216

Query: 47  ----------------------SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNA--- 80
                                  +KDLISIS E+YTR+ +L ME+ MLK+LKFRLNA   
Sbjct: 217 EMQLIGLTALLLASKYEDYWHPRIKDLISISAESYTREQILGMERSMLKQLKFRLNAPTP 276

Query: 81  ----------AQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126
                     AQS+ KLE LAFYLIEL LV+YEALK+KPSLLCASAIYVARCTL M
Sbjct: 277 YVFMLRFLKAAQSNKKLEQLAFYLIELCLVEYEALKYKPSLLCASAIYVARCTLHM 332

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SFW6|CCB24_ARATH Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2 Back     alignment and function description
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q9LDM4|CCB23_ARATH Cyclin-B2-3 OS=Arabidopsis thaliana GN=CYCB2-3 PE=2 SV=2 Back     alignment and function description
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description
>sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica GN=CYCB2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
359494635 673 PREDICTED: putative cyclin-B3-1-like [Vi 0.890 0.181 0.549 1e-37
297736122 604 unnamed protein product [Vitis vinifera] 0.890 0.201 0.549 1e-37
356523537 562 PREDICTED: putative cyclin-B3-1-like [Gl 0.897 0.218 0.517 5e-35
224112315 333 predicted protein [Populus trichocarpa] 0.883 0.363 0.523 1e-33
255549526 460 cyclin B, putative [Ricinus communis] gi 0.868 0.258 0.529 2e-32
6031209 257 cyclin [Pisum sativum] 0.883 0.470 0.5 1e-31
449444270 594 PREDICTED: putative cyclin-B3-1-like [Cu 0.883 0.203 0.479 1e-29
449524480 629 PREDICTED: putative cyclin-B3-1-like [Cu 0.883 0.192 0.479 2e-29
224098844 333 predicted protein [Populus trichocarpa] 0.883 0.363 0.546 3e-29
334182617 648 cyclin B3-1 [Arabidopsis thaliana] gi|33 0.912 0.192 0.465 2e-28
>gi|359494635|ref|XP_002264188.2| PREDICTED: putative cyclin-B3-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 108/173 (62%), Gaps = 51/173 (29%)

Query: 4   PPMENFMSNQTDITPQMIGICHSC--QVHLKFDLMAETLYLMVTL--------------- 46
           P M+N+MS Q+DITPQM GI  +   +VH KF+LM ETLYLMVTL               
Sbjct: 436 PSMQNYMSIQSDITPQMRGILINWLIEVHYKFELMQETLYLMVTLFDRYLSLVPIKKNDM 495

Query: 47  --------------------SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLN------ 79
                                VKDLISIS E+YTRD ML MEK++L KLKFRLN      
Sbjct: 496 QLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKVVLNKLKFRLNVPTPYV 555

Query: 80  -------AAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125
                  AAQSD +LEHLAFYLIEL LV+YEALK+KPSLLCASAIY+ARCTLQ
Sbjct: 556 FMMRFLKAAQSDKRLEHLAFYLIELCLVEYEALKYKPSLLCASAIYLARCTLQ 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736122|emb|CBI24160.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523537|ref|XP_003530394.1| PREDICTED: putative cyclin-B3-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224112315|ref|XP_002316151.1| predicted protein [Populus trichocarpa] gi|222865191|gb|EEF02322.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549526|ref|XP_002515815.1| cyclin B, putative [Ricinus communis] gi|223545044|gb|EEF46557.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|6031209|gb|AAD11475.2| cyclin [Pisum sativum] Back     alignment and taxonomy information
>gi|449444270|ref|XP_004139898.1| PREDICTED: putative cyclin-B3-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524480|ref|XP_004169250.1| PREDICTED: putative cyclin-B3-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224098844|ref|XP_002311288.1| predicted protein [Populus trichocarpa] gi|222851108|gb|EEE88655.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334182617|ref|NP_173083.3| cyclin B3-1 [Arabidopsis thaliana] gi|332191315|gb|AEE29436.1| cyclin B3-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.350 0.111 0.645 6.3e-18
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.350 0.111 0.625 1.9e-17
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.343 0.109 0.617 4.3e-15
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.343 0.109 0.617 1.8e-14
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.343 0.113 0.510 1.9e-12
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.343 0.105 0.446 6.4e-12
TAIR|locus:2030457265 AT1G20590 [Arabidopsis thalian 0.350 0.181 0.645 1e-10
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.335 0.118 0.468 1.5e-10
TAIR|locus:2148052436 CYC3B "mitotic-like cyclin 3B 0.343 0.107 0.519 7.5e-10
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.350 0.112 0.408 2.6e-09
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 152 (58.6 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 31/48 (64%), Positives = 39/48 (81%)

Query:    78 LNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125
             L AAQSD KLE L+F++IEL LV+YE L++ PS L ASAIY A+CTL+
Sbjct:   318 LKAAQSDKKLEILSFFMIELCLVEYEMLEYLPSKLAASAIYTAQCTLK 365
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030457 AT1G20590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148052 CYC3B "mitotic-like cyclin 3B from Arabidopsis" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002083001
SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (626 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 1e-13
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 8e-09
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-08
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-07
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-05
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information 
 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 80  AAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMRY 128
           AA  D +   LA YL+ELSL+ Y+ LK+ PSL+ A+A+Y+AR TL    
Sbjct: 13  AADYDLETRTLAKYLLELSLLDYDFLKYPPSLIAAAAVYLARKTLGSPP 61

Cyclins regulate cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain. Length = 117
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 137
KOG0653391 consensus Cyclin B and related kinase-activating p 99.92
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.92
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.91
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.91
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.78
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.5
TIGR00569305 ccl1 cyclin ccl1. University). 99.13
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.05
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 98.15
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 98.13
KOG0835 367 consensus Cyclin L [General function prediction on 98.13
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 97.99
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 97.63
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.28
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 97.24
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 96.93
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 96.33
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 96.33
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 95.19
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 92.79
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 91.31
KOG1675343 consensus Predicted cyclin [General function predi 86.72
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.92  E-value=1.6e-25  Score=181.56  Aligned_cols=122  Identities=40%  Similarity=0.598  Sum_probs=112.1

Q ss_pred             CCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh-----------------------------------
Q 047159            4 PPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-----------------------------------   46 (137)
Q Consensus         4 ~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-----------------------------------   46 (137)
                      .|.+ |+..|++++++||++|||  ++||.+|+|.+||||||||+                                   
T Consensus       142 ~p~~-~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~  220 (391)
T KOG0653|consen  142 LPLS-YDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISL  220 (391)
T ss_pred             Cchh-hhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccC
Confidence            3444 558899999999999999  99999999999999999999                                   


Q ss_pred             -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHH
Q 047159           47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSL  111 (137)
Q Consensus        47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~  111 (137)
                       .++||++++ ++||++||++||+.||++|+|+++.+             ..|...+.+++|++|+++.|++++.++||.
T Consensus       221 P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~  300 (391)
T KOG0653|consen  221 PSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSS  300 (391)
T ss_pred             CccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHH
Confidence             468999999 99999999999999999999999954             346678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 047159          112 LCASAIYVARCTLQM  126 (137)
Q Consensus       112 iAaaai~lA~~~l~~  126 (137)
                      +|||+.++++.+..+
T Consensus       301 ~aaa~~~~~~~~~~~  315 (391)
T KOG0653|consen  301 SAAASFTLALRMLSK  315 (391)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999875

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-28
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 3e-28
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-26
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 6e-26
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 9e-26
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 4e-25
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 6e-25
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-23
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-04
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
 Score =  103 bits (260), Expect = 1e-28
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 55/178 (30%)

Query: 3   LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-------------- 46
           LP   +    QT++T     I  +    +   F+L      L V++              
Sbjct: 34  LPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKT 93

Query: 47  ---------------------SVKDLISISE-TYTRDHMLRMEKLMLKKLKFRLNA---- 80
                                +V  L  +S   +T   ++  EK +L+ LK+   A    
Sbjct: 94  LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLAT 153

Query: 81  -------------AQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125
                             +L   A   I  +L+Q       P L+CA  +     T  
Sbjct: 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN 211
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.97
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.96
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.96
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.96
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.96
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.94
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.94
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.94
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.82
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.76
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.74
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.73
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.7
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.63
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.31
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.92
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 97.98
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.99
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 89.64
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
Probab=99.97  E-value=4.8e-30  Score=195.83  Aligned_cols=124  Identities=25%  Similarity=0.275  Sum_probs=111.1

Q ss_pred             CCCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh--------------------------------
Q 047159            2 LLPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL--------------------------------   46 (137)
Q Consensus         2 ~~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l--------------------------------   46 (137)
                      ...|.++||+ .|++|+++||.++||  ++||.+|++.++|+|+||+|                                
T Consensus        32 ~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~  111 (254)
T 2f2c_A           32 LLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTV  111 (254)
T ss_dssp             TTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCS
T ss_pred             hhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhccc
Confidence            4678999997 899999999999999  99999999999999999999                                


Q ss_pred             ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-------------c----HHHHHHHHHHHHHHhchhccc
Q 047159           47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-------------D----TKLEHLAFYLIELSLVQYEAL  105 (137)
Q Consensus        47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-------------d----~~~~~~a~yl~el~l~d~~~~  105 (137)
                         +++||+++| +.|++++|.+||+.||++|+|+++.+++             +    ..++..|.|++++++.|+.|+
T Consensus       112 ~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~  191 (254)
T 2f2c_A          112 KPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIA  191 (254)
T ss_dssp             SCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGT
T ss_pred             CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchh
Confidence               678999999 9999999999999999999999995432             1    124678999999999999999


Q ss_pred             CcChHHHHHHHHHHHHHHhC
Q 047159          106 KFKPSLLCASAIYVARCTLQ  125 (137)
Q Consensus       106 ~~~pS~iAaaai~lA~~~l~  125 (137)
                      .|+||.|||||+++|+...+
T Consensus       192 ~~~PS~iAaAai~la~~~~~  211 (254)
T 2f2c_A          192 LLSPGLICAGGLLTTIETDN  211 (254)
T ss_dssp             TSCHHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999874
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 137
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 1e-10
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-08
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-08
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 4e-08
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 1e-06
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 4e-06
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (128), Expect = 1e-10
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 76  FRLNAAQSDTKLEHLAFYLIELSLVQYEA-LKFKPSLLCASAIYVARCTLQM 126
           + L+   ++ K+E LA +L ELSL+  +  LK+ PS++  +A ++A  T+  
Sbjct: 10  YFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG 61
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.85
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.83
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.82
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.81
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.67
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.35
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.6
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.53
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.25
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.25
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.51
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 96.27
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.94
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 91.84
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 91.09
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 89.51
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 86.72
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 86.18
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 83.99
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 81.99
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.6e-21  Score=133.22  Aligned_cols=78  Identities=40%  Similarity=0.583  Sum_probs=74.2

Q ss_pred             CCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------
Q 047159            3 LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------   46 (137)
Q Consensus         3 ~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------   46 (137)
                      ..|++||+++|++||+.||..+||  ++|+.+++++++|+|+||+|                                  
T Consensus        13 ~~p~~~~l~~q~~i~~~~R~~li~W~~~v~~~~~l~~~t~~lAv~llDr~l~~~~i~~~~~qLi~~~cl~iAsK~ee~~~   92 (128)
T d2cchb1          13 CKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYP   92 (128)
T ss_dssp             TCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             hCCCchhhhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHhccC
Confidence            578899999999999999999999  99999999999999999999                                  


Q ss_pred             -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccc
Q 047159           47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNA   80 (137)
Q Consensus        47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~   80 (137)
                       .+++++.++ +.||++|+++||+.||++|+|+|++
T Consensus        93 ~~l~~l~~~~~~~~t~~~i~~mE~~IL~~L~~~l~a  128 (128)
T d2cchb1          93 PEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAA  128 (128)
T ss_dssp             CCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCC
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCeecC
Confidence             678899999 9999999999999999999999973
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure