Citrus Sinensis ID: 047161
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | 2.2.26 [Sep-21-2011] | |||||||
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.895 | 0.563 | 0.289 | 5e-81 | |
| O82500 | 1095 | Putative disease resistan | no | no | 0.897 | 0.589 | 0.268 | 2e-58 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.858 | 0.475 | 0.262 | 4e-55 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.727 | 0.276 | 0.253 | 6e-39 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.716 | 0.376 | 0.237 | 6e-27 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.316 | 0.141 | 0.273 | 4e-16 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.252 | 0.141 | 0.306 | 2e-15 | |
| Q9FHE9 | 354 | Protein PHLOEM PROTEIN 2- | no | no | 0.158 | 0.322 | 0.318 | 3e-10 | |
| Q9LMP6 | 851 | Probable disease resistan | no | no | 0.154 | 0.130 | 0.341 | 4e-09 | |
| Q9FG91 | 848 | Probable disease resistan | no | no | 0.320 | 0.272 | 0.257 | 3e-08 |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 302 bits (774), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 260/898 (28%), Positives = 392/898 (43%), Gaps = 253/898 (28%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+K F+D K LE G + L KAIEES+F++VVFS NYA S WCL+EL KI
Sbjct: 39 GIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFK 98
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSG-WHLK 100
P+ VR Q SF +AF +HE +++ E +Q WR AL E AN G +
Sbjct: 99 QTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNR 158
Query: 101 DRHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMG 160
D+ + + I++IV +IS K +L L ++V +++ L+K+ LL+ VR++GI GMG
Sbjct: 159 DKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMG 218
Query: 161 GV------------------------------ELSE-KDGLIALQKQLLSKTLMEIDIEI 189
GV ++ E K G+ +LQ LLS+ L E
Sbjct: 219 GVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLRE-KANY 277
Query: 190 RNDFDGIKMIKRELRRRNVLVVIDDAVHI-RQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248
N+ DG + LR + VL+V+DD + L LAG WFG+GSRIII TRD+HL+
Sbjct: 278 NNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIE 337
Query: 249 TLRVDGVYKVEKLDDDEALELFNKRAFDGQ-PSKDYVELIKRIVKYADGLPFALETLGSV 307
+ D +Y+V L D E+++LF + AF + P++++ +L +V YA GLP AL+ GS+
Sbjct: 338 --KNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSL 395
Query: 308 LFGRSVDGWRSTLERLNKHS----------------------------------ADEILD 333
L + W+S +E + +S D IL
Sbjct: 396 LHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQ 455
Query: 334 VLEISFNGLKGRIEIMRKSP---------------------------EEPGKCSRLWKVA 366
+LE G + + I+ ++PG+ SRLW
Sbjct: 456 ILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQKDPGERSRLWLAK 515
Query: 367 DVSHVLRRNTAFLKM-------------------TNLRLLKIHNLQLPA---GLESLSDE 404
+V V+ NT + M N++ L++ N+ + ++ L +
Sbjct: 516 EVEEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNN 575
Query: 405 LRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNL--------------IRT 450
LR YP +S PS+ E+ + + + + W K+L RT
Sbjct: 576 LRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRT 635
Query: 451 PDFTGAPNLEELILDGCKRLQ------------------NCTSLTTLP----------RE 482
PDFTG PNLE + L C L+ +C SL P
Sbjct: 636 PDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGL 695
Query: 483 IATESLQKLIELL---------------------------TGLVFLNLNDCKILVRLPST 515
+ +SL+KL E+ T + L L + K LV LPS+
Sbjct: 696 RSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSS 755
Query: 516 INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575
I KSL ++++S CSKLE++PE +G +++L D S T+I +P PS I+++
Sbjct: 756 ICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRP------PSSIIRLNKL 809
Query: 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS-GLCSLTELN------------ 622
+ LM +G D + P ++ GL SL LN
Sbjct: 810 I------------------ILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLP 851
Query: 623 --------LKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRV 672
LKKL+L RNNF L +I L + L L DC+RL L ELP ++ ++ V
Sbjct: 852 EEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHV 909
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 232/865 (26%), Positives = 362/865 (41%), Gaps = 219/865 (25%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ F D ++R + L AI ES+ SVV+FS NYA S+WCLDEL +I
Sbjct: 38 GIVTFRD-DHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQG 96
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ +RKQT F +F E ++ E+ NWR ALT+ AN G H ++
Sbjct: 97 LKVMPVFYKVDPSDIRKQTGKFGMSFL--ETCCGKTEERQHNWRRALTDAANILGDHPQN 154
Query: 102 -RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMG 160
+E I I K++ K +DLV M + + K+ LL ES+ VR++GI G
Sbjct: 155 WDNEAYKITTISKDVLEKLNATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPA 214
Query: 161 GV---------------------------ELSEKDGL------IALQKQLLSKTLMEIDI 187
GV E + GL + LQ++ LSK L + D+
Sbjct: 215 GVGKTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDL 274
Query: 188 EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLL 247
+R+ + I+ L+ + VL+++DD +I QL LA ++ WFG+ SRI++ T+++ LL
Sbjct: 275 RVRH----LGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLL 330
Query: 248 RTLRVDGVYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGS 306
+ ++ +Y+V EAL +F + AF PS D L A LP AL LGS
Sbjct: 331 VSHDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGS 390
Query: 307 VLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGL------------------------ 342
+ G+ + W +L L E+ VL++ ++GL
Sbjct: 391 FMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLK 450
Query: 343 ----------------------------KGRIE-----------IMRK-SPEEPGKCSRL 362
GRIE ++RK S EPGK L
Sbjct: 451 QMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFL 510
Query: 363 WKVADVSHVLRRNTA------------------------FLKMTNLRLLKIH-------- 390
+ VL NT F +M NL LK +
Sbjct: 511 MNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDK 570
Query: 391 ---NLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNL 447
LQLP S +LRLL W YPL+ PSS + +E NM + ++++ W G++ L
Sbjct: 571 MKVKLQLPEEGLSYLPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPL 630
Query: 448 --IRTPDFTGAPNLEEL--ILDGCK----RLQNCTSLTTLPREIATESLQKLIELLTGLV 499
+RT + + NLE L +++ K L C SL LP I L L+
Sbjct: 631 RNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKN---------LQHLI 681
Query: 500 FLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559
L ++ CK L +P+ IN SL ++ C++L+ PE ++ L++ GT I +
Sbjct: 682 LLEMSCCKKLEIIPTNIN-LPSLEVLHFRYCTRLQTFPEI---STNIRLLNLIGTAITEV 737
Query: 560 VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619
PS+ + S+I ++ M++ + + +P +
Sbjct: 738 PPSVKYWSKIDEI-----------------------CMERAKVKRL-VHVPYV------- 766
Query: 620 ELNLKKLNLRRN-NFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSL 678
L+KL LR N ++ + +LP+ + + + C + SL +LP + + C SL
Sbjct: 767 ---LEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESL 823
Query: 679 ATISDALRSCNSATSRIFCINCPKL 703
+ R N + F INC KL
Sbjct: 824 QILHGHFR--NKSIHLNF-INCLKL 845
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 218/829 (26%), Positives = 346/829 (41%), Gaps = 211/829 (25%)
Query: 10 ELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI----------------- 52
E+ER +++ P L AI+ESR ++V+FS+NYA STWCL+EL +I
Sbjct: 46 EIERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFH 105
Query: 53 --PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD-RHEVEFIQ 109
+ V+KQT F + F + +A +S ++ Q+W+ AL VA +G+ L+ E I+
Sbjct: 106 VDASEVKKQTGEFGKVFEETCKA--KSEDEKQSWKQALAAVAVMAGYDLRKWPSEAAMIE 163
Query: 110 EIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGV------ 162
E+ +++ RK + DLV + + ++ ++ +L ES++ R M+GI G G+
Sbjct: 164 ELAEDVLRKTMTPS-DDFGDLVGIENHIEAIKSVLCLESKEARIMVGIWGQSGIGKSTIG 222
Query: 163 ----------------------ELSEKDGL-IALQKQLLSKTLMEIDIEIRNDFDGIKMI 199
S+ G+ + +K+LLS+ L + DI+I + ++
Sbjct: 223 RALYSKLSIQFHHRAFITYKSTSGSDVSGMKLRWEKELLSEILGQKDIKIEH----FGVV 278
Query: 200 KRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVE 259
++ L+++ VL+++DD + L L GK WFGSGSRII+ T+D LL+ +D +Y+VE
Sbjct: 279 EQRLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSGSRIIVITQDRQLLKAHEIDLIYEVE 338
Query: 260 KLDDDEALELFNKRAFD-GQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRS 318
+ AL + + AF P D+ EL + K A LP L LGS L GR+ + W
Sbjct: 339 FPSEHLALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWME 398
Query: 319 TLERLNKHSADEILDVLEIS------------------FNGLK----------------- 343
+ RL +I+ L +S FNG +
Sbjct: 399 MMPRLRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVKDLLKDNVGFTML 458
Query: 344 -----------GRIEIMR------------KSPEEPGKCSRLWKVADVSHVLRRNT---- 376
G IE+ KS PGK L D+ V+ T
Sbjct: 459 TEKSLIRITPDGYIEMHNLLEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTET 518
Query: 377 ----------------------AFLKMTNLRLLKI-HNLQLPAGLESLSDELRLLQWHGY 413
+F M NL+ L+I + LP L L +LRLL W
Sbjct: 519 LLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEIGYYGDLPQSLVYLPLKLRLLDWDDC 578
Query: 414 PLKSLPSSMEMDKTLECNMCYRRIEQFWKGI--------------KNLIRTPDFTGAPNL 459
PLKSLPS+ + + + M Y ++E+ W+G NL PD + A NL
Sbjct: 579 PLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINL 638
Query: 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGW 519
EEL L GC K LV LPS+I
Sbjct: 639 EELDLVGC---------------------------------------KSLVTLPSSIQNA 659
Query: 520 KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTR 579
L +++S C KLE+ P L +ESLE L+++G + P+I + F + R
Sbjct: 660 TKLIYLDMSDCKKLESFPTDL-NLESLEYLNLTGCPNLRNFPAIKMGCSDVD---FPEGR 715
Query: 580 DHRTSSSS-WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG 638
+ W+ P L D + +P C L LN+R L
Sbjct: 716 NEIVVEDCFWNKNLPAGL---DYLDCLTRCMP-----CEFRPEQLAFLNVRGYKHEKLWE 767
Query: 639 TINHLPKFKHLKLDDCKRLRSLSEL--PSDIKKVRVHGCTSLATISDAL 685
I L + + L + + L + +L + ++ + ++ C SL T+ +
Sbjct: 768 GIQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTI 816
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 180/709 (25%), Positives = 289/709 (40%), Gaps = 185/709 (26%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWC-------LDELAKIP 53
G+ ++E E++ A+ + R ++V + Y S ++ P
Sbjct: 696 GISVYEKFNEVD-----------ALPKCRVLIIVLTSTYVPSNLLNILEHQHTEDRVVYP 744
Query: 54 TVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVK 113
R F +E + + K W+ AL E+ G+ L D+ E E I EIV+
Sbjct: 745 IFYRLSPYDFVCNSKNYERFYLQDEPK--KWQAALKEITQMPGYTLTDKSESELIDEIVR 802
Query: 114 EISRKKGPRTLGILD--DLVEMNSRLKKLRLLLDAESRDVRMIGI---CGMGGVELSE-- 166
+ + L D +++ M+ +++++ LL ES DVR IGI G+G ++E
Sbjct: 803 D-----ALKVLCSADKVNMIGMDMQVEEILSLLCIESLDVRSIGIWGTVGIGKTTIAEEI 857
Query: 167 --------------KD--------GLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELR 204
KD G A+++ LS+ L IR ++ L+
Sbjct: 858 FRKISVQYETCVVLKDLHKEVEVKGHDAVRENFLSEVLEVEPHVIRISDIKTSFLRSRLQ 917
Query: 205 RRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDD 264
R+ +LV++DD R ++ G ++FG GSRII+ +R+ + ++D VY+V+ LD
Sbjct: 918 RKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTSRNRRVFVLCKIDHVYEVKPLDIP 977
Query: 265 EALELFNKRAFDGQPSKD-YVELIKRIVKYADGLPFALETLGSV---------------- 307
++L L ++ S + Y L +VK+++G P L+ L S+
Sbjct: 978 KSLLLLDRGTCQIVLSPEVYKTLSLELVKFSNGNPQVLQFLSSIDREWNKLSQEVKTTSP 1037
Query: 308 -----LFGRSVDGWRST-----------LERLNKHSADEILD----VLEISFNGL----- 342
+F +S G R++K + +LD + F GL
Sbjct: 1038 IYIPGIFEKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSL 1097
Query: 343 -----------------KGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTA-------- 377
GR + ++S + PG SRLW + HV +T
Sbjct: 1098 LTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIF 1157
Query: 378 --------------FLKMTNLRLLKI--------HNLQLPAGLESLSDELRLLQWHGYPL 415
F KM NLRLLK+ H + P GLE L +LRLL W YPL
Sbjct: 1158 LDMLNLKFDANPNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYLPSKLRLLHWEYYPL 1217
Query: 416 KSLPSSMEMDKTLECNMCYRRIEQFWKGIK----------------------NLIRTPDF 453
SLP S + +E N+ ++ WKG K L + P
Sbjct: 1218 SSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRL 1277
Query: 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP 513
+ A NLE + L+GC L + + + ++ LVFLNL C L +P
Sbjct: 1278 SSATNLEHIDLEGCNSLLSLSQSISYLKK---------------LVFLNLKGCSKLENIP 1322
Query: 514 STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPS 562
S ++ +SL +NLS CSKL N PE +++EL + GT+I Q +PS
Sbjct: 1323 SMVD-LESLEVLNLSGCSKLGNFPEI---SPNVKELYMGGTMI-QEIPS 1366
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 180/758 (23%), Positives = 292/758 (38%), Gaps = 242/758 (31%)
Query: 25 IEESRFSVVVFSRNYAYSTWCLDELAKIPTVVRKQTRSFHEAFAKHEEAFRESTEKVQNW 84
+E +R SV++ N S LD+L K+ + + + R S + W
Sbjct: 52 VERARVSVMILPGNRTVS---LDKLVKVLDCQKNKDQVVVPVLY----GVRSSETE---W 101
Query: 85 RHALTEVANPSGWHL-KDRHEVEFIQEIVKEISRKK-GPRTLGILDDLVEMNSRLKKLRL 142
AL S H K+ + + ++E V+++ K +GI L+E+ + K L
Sbjct: 102 LSALDSKGFSSVHHSRKECSDSQLVKETVRDVYEKLFYMERIGIYSKLLEIEKMINKQPL 161
Query: 143 LLDAESRDVRMIGICGMGGVELSE-------------------KDGLIALQKQ----LLS 179
D+R +GI GM G+ + +D A+Q++ LL
Sbjct: 162 -------DIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFIEDYTKAIQEKGVYCLLE 214
Query: 180 KTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIII 239
+ ++ + + +++ L + VLVV+DD + G WFG S III
Sbjct: 215 EQFLKENAGASGTVTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIII 274
Query: 240 PTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRA-FDGQPSKDYVELIKRIVKYADGLP 298
++D+ + R RV+ +Y+V+ L++ EAL+LF+ A D ++ E+ +++KYA+G P
Sbjct: 275 TSKDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHP 334
Query: 299 FALETLGSVLFGRS--------------------VDGWRSTLERLNKHSADEILDV---- 334
AL G L G+ VD +S+ + LN + LD+
Sbjct: 335 LALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFF 394
Query: 335 -------------------------------LEISFNGLK--------GRIEIMRKSPEE 355
+ IS N ++ GR +I+ + +
Sbjct: 395 QGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGR-QIINRETRQ 453
Query: 356 PGKCSRLWKVADVSHVL----------RRNT------------AFLKMTNL--------- 384
+ SRLW+ + ++L ++ T FL +NL
Sbjct: 454 TKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLSFDIKHVAF 513
Query: 385 ------RLLKIH---------NLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLE 429
RL KI+ N L L SL + LRLL W YPL+ LP + + +E
Sbjct: 514 DNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVE 573
Query: 430 CNMCYRRIEQFWKGIKN--------------LIRTPDFTGAPNLEELILDGCKRLQN--- 472
NM Y ++++ W G K+ L+ D A NLE + L GC RLQ+
Sbjct: 574 INMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPA 633
Query: 473 --------------CT---SLTTLPREIATESLQ--KLIEL------------------- 494
CT S +P I T +LQ +IEL
Sbjct: 634 TGQLLHLRVVNLSGCTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAEI 693
Query: 495 --LTG---------------------------LVFLNLNDCKILVRLPSTINGWKSLRTV 525
L+G L L LNDC L LP+ +N + L+ +
Sbjct: 694 PGLSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLPNMVN-LELLKAL 752
Query: 526 NLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563
+LS CS+LE + G +L+EL + GT +RQ VP +
Sbjct: 753 DLSGCSELETIQ---GFPRNLKELYLVGTAVRQ-VPQL 786
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 39/267 (14%)
Query: 106 EFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV--- 162
E ++EIV+++ K P + V + +RL ++ LL + RD+R IGI GM G+
Sbjct: 150 ELVEEIVRDVYGKLYPA------ERVGIYARLLEIEKLLYKQHRDIRSIGIWGMPGIGKT 203
Query: 163 ------------------------ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKM 198
E K+GL L K+ + K L + + +I + +
Sbjct: 204 TLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERIGKILKD-EFDIESSYIMRPT 262
Query: 199 IKRE-LRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYK 257
+ R+ L + +LVV+DD + WFGSGS III + D+ + +++ +Y
Sbjct: 263 LHRDKLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSVDKQVFAFCQINQIYT 322
Query: 258 VEKLDDDEALELFNKRAFD-GQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGW 316
V+ L+ EAL+LF++ F +P ++ +L +++ Y +G P AL G L G+ +
Sbjct: 323 VQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGKKSEME 382
Query: 317 RSTLERLNKHSAD-EILDVLEISFNGL 342
+ E KH +I DVL+ +++ L
Sbjct: 383 TAFFEL--KHCPPLKIQDVLKNAYSAL 407
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 113/274 (41%), Gaps = 92/274 (33%)
Query: 376 TAFLKMTNLRLLKIHN--------LQLPAG-LESLSDELRLLQWHGYPLKSLPSSMEMDK 426
+AF M NLRLLKI+ + P G L SL +ELRLL W YPLKSLP + +
Sbjct: 518 SAFKNMLNLRLLKIYCSNPEVHPVINFPTGSLHSLPNELRLLHWENYPLKSLPQNFDPRH 577
Query: 427 TLECNMCYRRIEQFWKGIKN--------------LIRTPDFTGAPNLEELILDGCKRLQN 472
+E NM Y ++++ W G KN L+ D A NLE + L GC RLQN
Sbjct: 578 LVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCTRLQN 637
Query: 473 -----------------C--------------------TSLTTLP--------REIA--- 484
C T + LP RE+
Sbjct: 638 FPAAGRLLRLRVVNLSGCIKIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNFL 697
Query: 485 ------TESLQKLIELLTG---------LVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529
+E L++L LL L+ L L DC L LP+ N L ++LS
Sbjct: 698 TEIPGLSEELERLTSLLESNSSCQDLGKLICLELKDCSCLQSLPNMAN--LDLNVLDLSG 755
Query: 530 CSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563
CS L ++ G L++L + GT IR+ VP +
Sbjct: 756 CSSLNSIQ---GFPRFLKQLYLGGTAIRE-VPQL 785
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 24/138 (17%)
Query: 2 VKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------- 52
+ +F D E+ V+ LF I+ESR +VV+FS++Y S WCLDELA+I
Sbjct: 42 INVFIDKDEVVGTDLVN--LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGL 99
Query: 53 ----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHL--- 99
P+ V + F + F +E ++ E+ Q W+ AL + G L
Sbjct: 100 NAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEK 159
Query: 100 KDRHEVEFIQEIVKEISR 117
DR+E EF+ E++ EI +
Sbjct: 160 SDRNEREFMNEMILEIQK 177
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 233 SGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRA--FDGQPSKDYVELIKRI 290
+GS+I+ TR + + R + VDG KV+ L DEA ELF K+ Q +D L +++
Sbjct: 282 NGSKIVFTTRSKDVCRDMEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKV 341
Query: 291 VKYADGLPFALETLGSVLFGR-SVDGWRSTLERLNKHS------ADEILDVLEISFNGLK 343
+ GLP AL +G + R +V W+ + LN S ++IL VL+ S++ LK
Sbjct: 342 AEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLK 401
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 45/276 (16%)
Query: 109 QEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG------- 161
Q+I+ + +K T+G LD +V + L+D E +R +G+ GMGG
Sbjct: 139 QKIIPKAEKKHIQTTVG-LDTMVGI-----AWESLIDDE---IRTLGLYGMGGIGKTTLL 189
Query: 162 -------VEL-SEKDGLI-----------ALQKQLLSKTLMEIDIEIRNDFDGIKMIKRE 202
VEL SE D +I +Q Q+L + + + E + +I
Sbjct: 190 ESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRPDKEWERETESKKASLINNN 249
Query: 203 LRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLD 262
L+R+ ++++DD L ++ +GS+I+ TR + + + ++ D KV+ L
Sbjct: 250 LKRKKFVLLLDDLWSEVDLIKIGVPPPSRENGSKIVFTTRSKEVCKHMKADKQIKVDCLS 309
Query: 263 DDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALETLGSVLFGR-SVDGWRST 319
DEA ELF D + +D L + + GLP AL +G + + +V WR
Sbjct: 310 PDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKAMVCKETVQEWRHA 369
Query: 320 LERLNKHS------ADEILDVLEISFNGLK-GRIEI 348
+ LN + IL +L+ S++ LK G I++
Sbjct: 370 INVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKL 405
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| 105922722 | 1446 | TIR-NBS-TIR type disease resistance prot | 0.943 | 0.469 | 0.348 | 1e-121 | |
| 111146892 | 1133 | CMR1 [Phaseolus vulgaris] | 0.934 | 0.593 | 0.348 | 1e-120 | |
| 224130518 | 1121 | tir-nbs-lrr resistance protein [Populus | 0.962 | 0.618 | 0.364 | 1e-120 | |
| 359493487 | 1162 | PREDICTED: TMV resistance protein N-like | 0.95 | 0.588 | 0.341 | 1e-118 | |
| 224116238 | 955 | tir-nbs-lrr resistance protein [Populus | 0.936 | 0.705 | 0.342 | 1e-118 | |
| 359493483 | 1274 | PREDICTED: TMV resistance protein N-like | 0.963 | 0.544 | 0.339 | 1e-118 | |
| 105922631 | 1336 | TIR-NBS-LRR-TIR type disease resistance | 0.934 | 0.503 | 0.360 | 1e-116 | |
| 37781280 | 1136 | nematode resistance-like protein [Solanu | 0.958 | 0.607 | 0.336 | 1e-115 | |
| 357507537 | 1122 | TMV resistance protein N [Medicago trunc | 0.930 | 0.597 | 0.334 | 1e-114 | |
| 359493489 | 1092 | PREDICTED: TMV resistance protein N-like | 0.913 | 0.602 | 0.357 | 1e-113 |
| >gi|105922722|gb|ABF81433.1| TIR-NBS-TIR type disease resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 315/904 (34%), Positives = 448/904 (49%), Gaps = 225/904 (24%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ ++ D +ELERGKA+ P L+KAIEESRFSV++FSR+YA S WCLDEL KI
Sbjct: 95 GIDVYMDDRELERGKAIEPALWKAIEESRFSVIIFSRDYASSPWCLDELVKIVQCMKEMG 154
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ V ++ R + EAF +HE+ F+E+ EKV+NW+ L+ VAN SGW +++
Sbjct: 155 QTVLPVFYDVDPSEVTERKRKYEEAFGEHEQNFKENLEKVRNWKDCLSTVANLSGWDIRN 214
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGI----- 156
R+E E I+ I + IS K I LV ++SR++ L + E IGI
Sbjct: 215 RNESESIKIIAEYISYKLSVTMPTISKKLVGIDSRVEVLNGYIGEEGGKAIFIGICGMGG 274
Query: 157 ---CGMGGV--ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVV 211
C + V + ++KDG LQ+QLLS+ LME + + + GI+MIKR R + +L +
Sbjct: 275 IGSCFLENVREDFAKKDGPRRLQEQLLSEILME-RASVWDSYRGIEMIKRRSRLKKILHI 333
Query: 212 IDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFN 271
+DD +QL A + WFG GSRIII +RD ++L +Y+ EKL+DD+AL LF+
Sbjct: 334 LDDVDDKKQLEFFAAEPGWFGPGSRIIITSRDTNVLTGNDDTKIYEAEKLNDDDALMLFS 393
Query: 272 KRAF-DGQPSKDYVELIKRIVKYADGLPF-------------------ALETLGSVLFGR 311
++AF + QP +D+VEL K++V YA+GLP A+ + + G+
Sbjct: 394 QKAFKNDQPDEDFVELSKQVVGYANGLPLAIEVIGSFLYARSIPEWRGAINRMNEIPDGK 453
Query: 312 SVDGWRSTLERLNKHSADEILDVLEISFNGLKGRI------------------------- 346
+D R + + L++ LD+ RI
Sbjct: 454 IIDVLRISFDGLHESDKKIFLDIACFLMGFKIDRITRILESRGFHAGIGIPVLIERSLIS 513
Query: 347 -----------------EIMR-KSPEEPGKCSRLWKVADVSHVLRRNT------------ 376
EI+R +SPEEPG+ SRLW DV L +T
Sbjct: 514 VSRDQVWMHNLLQIMGKEIVRCESPEEPGRRSRLWTYEDVCLALMDSTGKEKIEAIFLDM 573
Query: 377 -----------AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMD 425
AF KM+ LRLLKI+N+QL G E LS++LR L+WH YP KSLP+ +++D
Sbjct: 574 PGIKEAQWNMEAFSKMSKLRLLKINNVQLSEGPEDLSNKLRFLEWHSYPSKSLPAGLQVD 633
Query: 426 KTLECNMCYRRIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCKRLQ 471
+ +E +M RIEQ W G K NLI+T DFT PNLE LIL+GC L
Sbjct: 634 ELVELHMANSRIEQLWYGCKSAVNLKIINLSNSLNLIKTLDFTRIPNLENLILEGCTSLS 693
Query: 472 ------------------NCTSLTTLPREIATESLQ------------------------ 489
+C S+ LP + ESL+
Sbjct: 694 EVHPSLARHKKLEYVTLMDCVSIRILPSNLEMESLKVCILDGCSKLEKFPDIVGNMNKLT 753
Query: 490 ----------KL---IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536
KL I L GL L++N+CK L +PS+I KSL+ ++LS CS+L+N+
Sbjct: 754 VLHLDETGITKLSSSIHHLIGLEVLSMNNCKNLESIPSSIRCLKSLKKLDLSGCSELQNI 813
Query: 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSL 596
P++LG++E LEE+DVSGT IRQP SIF + + L
Sbjct: 814 PQNLGKVEGLEEIDVSGTSIRQPPASIFLLKSLKVLSL--------------------DG 853
Query: 597 MQKGSSDSMALMLPSLSGLCSLTELNLKKLNLR--------------------RNNFVSL 636
++ + + LPSLSGLCSL L+L NLR +NNFVSL
Sbjct: 854 CKRIAVNPTGDRLPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSQNNFVSL 913
Query: 637 RGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696
+IN L + L L+DC+ L SL E+PS ++ V ++GC L I D ++ +S S
Sbjct: 914 PESINQLSGLEMLVLEDCRMLESLPEVPSKVQTVNLNGCIRLKEIPDPIKLSSSKRSEFI 973
Query: 697 CINC 700
C+NC
Sbjct: 974 CLNC 977
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|111146892|gb|ABH07384.1| CMR1 [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 314/902 (34%), Positives = 438/902 (48%), Gaps = 229/902 (25%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+K F+D +LERGKA+S L KAIE+S F++++ S NYA STWCLDEL KI
Sbjct: 48 GIKTFKDDHDLERGKAISVELMKAIEDSMFALIILSPNYASSTWCLDELQKIVECEKEAF 107
Query: 53 -------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHEV 105
P+ VR Q SF +AF +HEE FRE EKV+ WR AL +VA+ SGW KD+HE
Sbjct: 108 PIFHGVDPSDVRHQRGSFAKAFQEHEEKFREDKEKVERWRDALRQVASYSGWDSKDQHEA 167
Query: 106 EFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGI--------- 156
I+ IV +I +K PR D+LV ++SR+K+L L+D D+R IGI
Sbjct: 168 TLIETIVGQIQKKLIPRLPCFTDNLVGVDSRMKELNSLVDIWLNDIRFIGIWGMGGIGKT 227
Query: 157 -----------------CGMGGV-ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKM 198
C + + ELS+ +GL+ +QK++LS + + + N +DG K+
Sbjct: 228 TIARLVYEAVKEKFKVSCFLENIRELSKTNGLVHIQKEILSHLNVRSN-DFCNLYDGKKI 286
Query: 199 IKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKV 258
I L + VL+V+DD I QL L GK WFG GSR+II TRD+HLL+T VD YK
Sbjct: 287 IANSLSNKKVLLVLDDVSDISQLENLGGKREWFGPGSRLIITTRDKHLLKTYGVDMTYKA 346
Query: 259 EKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWR 317
L +EAL+LF +AF QP + Y+ L K +V+YA GLP ALE LGS L GRS + W
Sbjct: 347 RGLAQNEALQLFCLKAFKQDQPKEGYLNLCKGVVEYARGLPLALEVLGSHLCGRSTEVWH 406
Query: 318 STLERLNK--HSA--------------------------------DEILDVLE------- 336
S LE++ HS DE++++LE
Sbjct: 407 SALEQIRSFPHSKIQDTLKISYDSLEPTEKKLFLDIACFFVGMDIDEVVNILENCGDHPI 466
Query: 337 -----------ISFNGLK------------GRIEIMRKSPEEPGKCSRLWKVADVSHVLR 373
++ + K GR + ++SP +PGK SRLW D+ +VL
Sbjct: 467 IGIDILIERSLVTLDMTKNKLGMHDLLQEMGRNIVYQESPNDPGKRSRLWSQKDIDYVLT 526
Query: 374 RNT-------------------------AFLKMTNLRLLKIHNLQLPAGLESLSDELRLL 408
+N +F K++ LRLLK+ ++QLP GL L L+++
Sbjct: 527 KNKGTDEIRGIVLNLVQPYDCEARWNTESFSKISQLRLLKLCDMQLPRGLNCLPSALKVV 586
Query: 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGI--------------KNLIRTPDFT 454
W G PLK+LP S ++D+ ++ + Y +IEQ W G KNL ++PDF
Sbjct: 587 HWRGCPLKTLPLSNQLDEVVDLKLPYSKIEQLWHGTELLEKLRFINLSFSKNLKQSPDFV 646
Query: 455 GAPNLEELILDGCKRL------------------QNCTSLTTLPREIATESLQKL----- 491
G PNLE L+L GC L ++C L TLPR++ SL L
Sbjct: 647 GVPNLESLVLKGCTSLTEVHPSLVRHKKLVWLNFEDCKKLKTLPRKMEMSSLNDLNLSGC 706
Query: 492 --------------------------------IELLTGLVFLNLNDCKILVRLPSTINGW 519
+ L GL L+ +CK LV LP TI+
Sbjct: 707 SEFKCLPEFAESMEHLSVLCLEGTAITKLPTSLGCLIGLSHLDTKNCKNLVCLPDTIHKL 766
Query: 520 KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTR 579
+SL +N+S CSKL ++PE L +++ LEELD S T I Q +PS F L+ +
Sbjct: 767 RSLIVLNVSGCSKLSSLPEGLKEIKCLEELDASETAI-QELPSFVFYLENLRDISVAGCK 825
Query: 580 DHRTSSSSWHLWFPFSLMQKGSSDSM-------ALMLPSL----------------SGLC 616
S S + PF + S+ AL LPSL C
Sbjct: 826 G-PVSKSVNSFFLPFKRLFGNQQTSIGFRLPPSALSLPSLKRINLSYCNLSEESFPGDFC 884
Query: 617 SLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCT 676
SL+ L + LNL NNFVSL I+ L K +HL L+ CK+L++L +LPS+++ + CT
Sbjct: 885 SLSSLMI--LNLTGNNFVSLPSCISKLAKLEHLILNSCKKLQTLPKLPSNMRGLDASNCT 942
Query: 677 SL 678
S
Sbjct: 943 SF 944
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 327/898 (36%), Positives = 447/898 (49%), Gaps = 205/898 (22%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
GV F D +ELERG +S L +AI++SRFSV+VFSRNY STWCL+EL KI
Sbjct: 41 GVITFRDDQELERGNEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGR 100
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ VR QT +AFA HEE F+++ EKVQ WR A+ VAN SGW L+D
Sbjct: 101 QTVIPVFYDVDPSEVRNQTGRLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQD 160
Query: 102 RHEVEFIQEIVKEIS---RKKGPRTLGILDDLVEMNSRLKKLRLLLDAES-RDVRMI--- 154
RHE EFIQ IV+EI RK + ++LV M+ RL+++ L L E DVR+I
Sbjct: 161 RHESEFIQGIVEEIVCKLRKSSYSMSWVTENLVGMDWRLEEMSLYLGVEQLNDVRVIGIC 220
Query: 155 -----------------------GICGMGGV-ELSEKDGLIALQKQLLSKTLMEIDIEIR 190
G + V E+ EK GL+ LQ+QLLS TLM+ +I
Sbjct: 221 GMGGIGKTTIARAVYEKMLGHFEGSSFLANVREVEEKHGLVRLQEQLLSDTLMDRRTKIS 280
Query: 191 NDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL 250
+ G+ I+ LR R VLVV+DD + QL L G +WF +GSR+II TRDE LL+
Sbjct: 281 DVHRGMNEIRVRLRSRMVLVVLDDVDQLVQLESLVGDRNWFDNGSRVIITTRDELLLKQF 340
Query: 251 RVDGVYKVEKLDDDEALELFNKRAFDGQ-PSKDYVELIKRIVKYADGLPFALETLGSVLF 309
VD +Y+V L++ EA++LF +AF P +DYV ++VKYADGLP AL LGS
Sbjct: 341 GVDKIYRVASLNNIEAVQLFCLKAFRSYCPPEDYVLQTIQVVKYADGLPLALHVLGSFFS 400
Query: 310 G-RSV-------------------DGWRSTLERLNKHSADEILDVLEISFNGLK------ 343
G RSV D + + + LN+ LD+ FNG +
Sbjct: 401 GIRSVELWNHSLKRLKDIPDKGILDKLKISFDGLNEVEKKIFLDI-ACFFNGWEEDCVTK 459
Query: 344 --------------------------------------GRIEIMRKSPEEPGKCSRLWKV 365
GR + R+S EEPGK +RLW
Sbjct: 460 LMESSGFYPQIGIRILVEKFLINISDNRVWMHDLLQEMGRQIVKRESHEEPGKRTRLWLC 519
Query: 366 ADVSHVLRRNT------------------------AFLKMTNLRLLKIHNLQLPAGLESL 401
DV HVL NT + +KM LR+LK+ N+ L ++ L
Sbjct: 520 EDVIHVLLNNTGTDKVEGIVLNSNDEVDGLYLSAESIMKMKRLRILKLQNINLSQEIKYL 579
Query: 402 SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGI--------------KNL 447
S+ELR L+W YP KSLPS+ + DK +E +M + I+Q W+G+ +NL
Sbjct: 580 SNELRYLEWCRYPFKSLPSTFQPDKLVELHMRHSSIKQLWEGVRPLKLLRAIDLRHSRNL 639
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCK 507
I+TPDF PNLE+L L+GC++L + I +L GLVFLNL DC
Sbjct: 640 IKTPDFRQVPNLEKLNLEGCRKLV---------------KIDDSIGILKGLVFLNLKDCV 684
Query: 508 ILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
L LP+ I K+LR +NL C KLE +PE LG + +LEELDV T I Q +PS F
Sbjct: 685 KLACLPTNICELKTLRILNLYGCFKLEKLPEMLGNVINLEELDVGRTAITQ-LPSTFGLW 743
Query: 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP----------SLSGLCS 617
+ LKV F + + SW+ F F + + ++ +LS C+
Sbjct: 744 KKLKVLSFDGCKG--PAPKSWYSLFSFRSLPRNPCPITLMLSSLSTLYSLTKLNLSN-CN 800
Query: 618 LTE----------LNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
L E +L++L+L NNFV + +I+ L K K L+L +CK+L+SL +LPS +
Sbjct: 801 LMEGELPDDMSCFPSLEELDLIGNNFVRIPSSISRLSKLKSLRLGNCKKLQSLPDLPSRL 860
Query: 668 KKVRVHGCTSLATISDALRSCNSAT--SRIFCINCPKLI---------LNWLQQYSIF 714
+ + V GC SL T+ + C + S IF +NC +L L WL+ Y F
Sbjct: 861 EYLGVDGCASLGTLPNLFEECARSKFLSLIF-MNCSELTDYQGNISMGLTWLKYYLHF 917
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 324/950 (34%), Positives = 440/950 (46%), Gaps = 266/950 (28%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ F D +L RG+ +SP L AIEESRFS+++FS NYA S+WCLDEL KI
Sbjct: 49 GINTFMD-DQLRRGEQISPALLNAIEESRFSIIIFSDNYASSSWCLDELVKILDCIKVMG 107
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ V+KQT SF EAFAKHE+ +RE EKV WR ALTEVA SGW +D
Sbjct: 108 HRALPVFYNLNPSHVKKQTGSFAEAFAKHEQEYREKMEKVVKWREALTEVATISGWDSRD 167
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG 161
RHE + I+EIV++I K + + LV M SRL+ + LL S DVRM+GI GM G
Sbjct: 168 RHESKLIEEIVRDIWNKLVGTSPSYMKGLVGMESRLEAMDSLLSMFSDDVRMVGIWGMAG 227
Query: 162 V---------------------------ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFD 194
+ E S K GL LQ +LLS+ L E
Sbjct: 228 IGKTTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERKPNAGLFNK 287
Query: 195 GIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG 254
GI +K L R VL+++DD +QL LAG ++WFG GSRIII TRD HLL VD
Sbjct: 288 GINFMKDVLHSRKVLIILDDVDQRQQLEDLAGYNNWFGLGSRIIITTRDRHLLTCQEVDA 347
Query: 255 VYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSV 313
+Y+V++LD+DEAL+LF AF ++D+ +L + Y GLP AL+ LGS L+ + +
Sbjct: 348 IYEVKELDNDEALKLFCLYAFRHRHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGI 407
Query: 314 DGWRSTLERLNK----------------------------------HSADEILDVLEIS- 338
W S L +L + H D + D+L+
Sbjct: 408 HEWESELNKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCG 467
Query: 339 -FNGLKGR-------------------------IEIMRKSPEEPGKCSRLWKVADVSHVL 372
F G+ R EI+R+ E PG+ SRL D++HVL
Sbjct: 468 FFFGIGIRNLEDKSLITISENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHEDINHVL 527
Query: 373 RRNT-----------------------AFLKMTNLRLLKIHNLQLPAGL----------- 398
NT AF KM LRLLKI N+Q+ L
Sbjct: 528 TTNTGTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAY 587
Query: 399 -----------------------ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYR 435
+ LS+ LR L WHGYPLKS PS+ +K +E NMC+
Sbjct: 588 THDVWTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFS 647
Query: 436 RIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCK------------- 468
R++Q W+G K +L +TPDF+G PNL LIL GC
Sbjct: 648 RLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALK 707
Query: 469 -----RLQNCTSLTTLPREIATESLQKL-------------------------------- 491
L+ C L + I ESLQ L
Sbjct: 708 KLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIK 767
Query: 492 -----IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL 546
IE LTGL LNL +CK L LP +I KSL+T+ L CS+L+ +P+ LG ++ L
Sbjct: 768 GLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCL 827
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
EL+ G+ I++ PSI + + K+ L S S ++ F F SS +
Sbjct: 828 AELNADGSGIQEVPPSITLLTNLQKLSL---AGCKGGDSKSRNMVFSFH-----SSPTEE 879
Query: 607 LMLPSLSGL----------CSLTE----------LNLKKLNLRRNNFVSLRGTINHLPKF 646
L LPS SGL C+L+E +L++L+L RN+F+++ +++ L +
Sbjct: 880 LRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRL 939
Query: 647 KHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696
+ L L+ CK L+SL ELPS ++ + H CTSL T S S + TS+ F
Sbjct: 940 RSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFS---CSSGAYTSKKF 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116238|ref|XP_002331995.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832119|gb|EEE70596.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 306/894 (34%), Positives = 438/894 (48%), Gaps = 220/894 (24%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ ++ D +ELERGKA+ P L+KAIEESRFSV++FSR+YA S WCLDEL KI
Sbjct: 41 GIDVYMDDRELERGKAIEPALWKAIEESRFSVIIFSRDYASSPWCLDELVKIVQCMKEMG 100
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ V ++ R + EAF +HE+ F+E+ EKV+NW+ L+ VAN SGW +++
Sbjct: 101 QTVLPVFYDVDPSEVTERKRKYEEAFGEHEQNFKENLEKVRNWKDCLSTVANLSGWDIRN 160
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG 161
R+E E I+ I + IS K I LV ++SR++ L + E +G
Sbjct: 161 RNESESIKIIAEYISYKLSVTMPTISKKLVGIDSRVEVLNGYIGEEGGKAIF-----IGI 215
Query: 162 VELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQL 221
+ ++QLLS+ LME + + + GI+MIKR R + +L ++DD +QL
Sbjct: 216 CGMGGIGKTTVAREQLLSEILME-RASVWDSYRGIEMIKRRSRLKKILHILDDVDDKKQL 274
Query: 222 NRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAF-DGQPS 280
A + WFG GSRIII +RD ++L +Y+ EKL+DD+AL LF+++AF + QP
Sbjct: 275 EFFAAEPGWFGPGSRIIITSRDTNVLTGNDDTKIYEAEKLNDDDALMLFSQKAFKNDQPD 334
Query: 281 KDYVELIKRIVKYADGLPF-------------------ALETLGSVLFGRSVDGWRSTLE 321
+D+VEL K++V YA+GLP A+ + + G+ +D R + +
Sbjct: 335 EDFVELSKQVVGYANGLPLAIEVIGSFLYARSIPEWRGAINRMNEIPDGKIIDVLRISFD 394
Query: 322 RLNKHSADEILDVLEISFNGLKGRI----------------------------------- 346
L++ LD+ RI
Sbjct: 395 GLHESDKKIFLDIACFLMGFKIDRITRILESRGFHAGIGIPVLIERSLISVSRDQVWMHN 454
Query: 347 -------EIMR-KSPEEPGKCSRLWKVADVSHVLRRNT---------------------- 376
EI+R +SPEEPG+ SRLW DV L +T
Sbjct: 455 LLQIMGKEIVRCESPEEPGRRSRLWTYEDVCLALMDSTGKEKIEAIFLDMPGIKEAQWNM 514
Query: 377 -AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYR 435
AF KM+ LRLLKI+N+QL G E LS++LR L+WH YP KSLP+ +++D+ +E +M
Sbjct: 515 EAFSKMSKLRLLKINNVQLSEGPEDLSNKLRFLEWHSYPSKSLPAGLQVDELVELHMANS 574
Query: 436 RIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCKRLQ---------- 471
RIEQ W G K NLI+T DFT PNLE LIL+GC L
Sbjct: 575 RIEQLWYGCKSAVNLKIINLSNSLNLIKTLDFTRIPNLENLILEGCTSLSEVHPSLARHK 634
Query: 472 --------NCTSLTTLPREIATESLQ---------------------------------- 489
+C S+ LP + ESL+
Sbjct: 635 KLEYVTLMDCVSIRILPSNLEMESLKVCILDGCSKLEKFPDIVGNMNKLTVLHLDETGIT 694
Query: 490 KL---IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL 546
KL I L GL L++N+CK L +PS+I KSL+ ++LS CS+L+N+P++LG++E L
Sbjct: 695 KLSSSIHHLIGLEVLSMNNCKNLESIPSSIRCLKSLKKLDLSGCSELQNIPQNLGKVEGL 754
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
EE+DVSGT IRQP SIF + + L ++ + +
Sbjct: 755 EEIDVSGTSIRQPPASIFLLKSLKVLSL--------------------DGCKRIAVNPTG 794
Query: 607 LMLPSLSGLCSLTELNLKKLNLR--------------------RNNFVSLRGTINHLPKF 646
LPSLSGLCSL L+L NLR +NNFVSL +IN L
Sbjct: 795 DRLPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSQNNFVSLPESINQLSGL 854
Query: 647 KHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINC 700
+ L L+DC+ L SL E+PS ++ V ++GC L I D ++ +S S C+NC
Sbjct: 855 EMLVLEDCRMLESLPEVPSKVQTVNLNGCIRLKEIPDPIKLSSSKRSEFICLNC 908
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 326/960 (33%), Positives = 446/960 (46%), Gaps = 266/960 (27%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ F D +L RG+ VSP L AIEESRFS+++FS NYA S+WCLDEL KI
Sbjct: 43 GINTFMD-DQLRRGEQVSPALLNAIEESRFSIIIFSDNYASSSWCLDELVKILDCIKVMG 101
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ V+KQT SF EAFAKHE+ RE EKV WR ALTEVA SGW +D
Sbjct: 102 HRALPVFYNVNPSHVKKQTGSFAEAFAKHEQENREKMEKVVKWREALTEVATISGWDSRD 161
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG 161
RHE + I+EIV++I K + + LV M SRL+ + LL S DVRM+GI GM G
Sbjct: 162 RHESKLIEEIVRDIWNKLVGTSPSYMKGLVGMESRLEAMDSLLCIGSLDVRMVGIWGMAG 221
Query: 162 V---------------------------ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFD 194
+ E S K GL LQ +LLS+ L E +
Sbjct: 222 IGKTTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERNPNAGLFNK 281
Query: 195 GIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG 254
GI +K L R VL+++DD +QL LAG ++WFGSGSRIII TRD HLL VD
Sbjct: 282 GINFMKDVLHSRKVLIILDDVDQRKQLEDLAGDNNWFGSGSRIIITTRDRHLLTCQEVDA 341
Query: 255 VYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSV 313
+Y+V++LD+DEAL+LF AF ++D+ +L + Y GLP AL+ LGS L+ + +
Sbjct: 342 IYEVKELDNDEALKLFCLYAFRHKHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGI 401
Query: 314 DGWRSTLERLNK----------------------------------HSADEILDVLEIS- 338
W+S L++L + H D + D+L+
Sbjct: 402 HEWKSELDKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCG 461
Query: 339 -FNGLKGR-------------------------IEIMRKSPEEPGKCSRLWKVADVSHVL 372
F G+ R EI+R+ E PG+ SRL D++HVL
Sbjct: 462 FFFGIGIRNLEDKSLITISENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHEDINHVL 521
Query: 373 RRNT-----------------------AFLKMTNLRLLKIHNLQLPAGL----------- 398
NT AF KM LRLLKI N+Q+ L
Sbjct: 522 TTNTGTEAVEGIFLDLSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAY 581
Query: 399 -----------------------ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYR 435
+ LS+ LR L WHGYPLKS PS+ +K +E NMC+
Sbjct: 582 THDVWIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFS 641
Query: 436 RIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCK------------- 468
R++Q W+G K +L + PDF+G PNL LIL GC
Sbjct: 642 RLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALK 701
Query: 469 -----RLQNCTSLTTLPREIATESLQKL-------------------------------- 491
L+ C L + I ESLQ L
Sbjct: 702 KLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIK 761
Query: 492 -----IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL 546
IE LTGL LNL +CK L LP +I KSL+T+ LS CS+L+++P++LG ++ L
Sbjct: 762 GLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCL 821
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
EL+ G+ +++ PSI + L++ + S S ++ F F SS +
Sbjct: 822 TELNADGSGVQEVPPSITLLTN-LQILSLAGCKG--GESKSRNMIFSFH-----SSPTEE 873
Query: 607 LMLPSLSGL----------CSLTE----------LNLKKLNLRRNNFVSLRGTINHLPKF 646
L LPS SGL C+L+E +L++L+L RN+F+++ +++ L +
Sbjct: 874 LRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRL 933
Query: 647 KHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATI---SDALRSCNSATSRIFCINCPKL 703
+ L L+ CK L+SL ELPS ++ + H CTSL T S A S R NC +L
Sbjct: 934 RSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRL 993
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|105922631|gb|ABF81427.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 318/883 (36%), Positives = 447/883 (50%), Gaps = 210/883 (23%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ ++ D +ELERGK + P L+KAIEESRFSV++FSR+YA S WCLDEL KI
Sbjct: 22 GIDVYMDDRELERGKTIEPALWKAIEESRFSVIIFSRDYASSPWCLDELVKIVQCMKETG 81
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ V +Q + +AF +HE+ F+E+ EKVQ W+ L+ V N SGW +++
Sbjct: 82 HTVLPVFYDVDPSEVAEQKGQYEKAFVEHEQNFKENLEKVQIWKDCLSTVTNLSGWDVRN 141
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAE-------------- 147
R+E E I+ IV+ IS K I LV ++SR+K L + E
Sbjct: 142 RNESESIKIIVEYISYKLSVTLPTISKKLVGIDSRVKVLNGYIGEEVGKAIFIGICGMGG 201
Query: 148 ---SRDVRMI---------GICGMGGVE--LSEKDGLIALQKQLLSKTLMEIDIEIRNDF 193
+ R++ G + V +EK G LQ+QLLS+ LME +++ +
Sbjct: 202 IGKTTVARVLYDKIRWQFEGSYFLANVREVFAEKGGPRRLQEQLLSEILMEC-ASLKDSY 260
Query: 194 DGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVD 253
GI+MIKR LR + +L+++DD +QL LA + WFG GSRIII +RD ++
Sbjct: 261 RGIEMIKRRLRLKKILLILDDVDDKKQLEFLAAEPGWFGPGSRIIITSRDTNVFTGNDDT 320
Query: 254 GVYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRS 312
+Y+ EKL+DD+AL LFN++AF + QP++D+V+L K++V YA+GLP ALE + F +
Sbjct: 321 KIYEAEKLNDDDALMLFNQKAFKNDQPTEDFVKLSKQVVGYANGLPLALEVIDIACFLKG 380
Query: 313 VD-----------------GWRSTLER-LNKHSADEIL--DVLEISFNGLKGRIEIMRKS 352
+ G + +ER L D++ D+L+I G+ + +S
Sbjct: 381 FEKDRIIRILDSCGFHAHIGTQVLIERSLISVYRDQVWMHDLLQI-----MGKEIVRSES 435
Query: 353 PEEPGKCSRLWKVADVSHVLRRNT-----------------------AFLKMTNLRLLKI 389
EEPG+ SRLW DV L NT AF KM+ LRLLKI
Sbjct: 436 SEEPGRRSRLWTFEDVRLALMDNTGKEKIEAIFLDMPEIKEAQWNMEAFSKMSRLRLLKI 495
Query: 390 HNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK---- 445
N+QL G E LS++LR L+WH YP KSLP+ +++D+ +E +M IEQ W G K
Sbjct: 496 DNVQLSEGPEDLSNKLRFLEWHSYPSKSLPAGLQVDELVELHMANSSIEQLWYGCKSAVN 555
Query: 446 ----------NLIRTPDFTGAPNLEELILDGC-------------KRLQ-----NCTSLT 477
NL +TPD TG PNLE LIL+GC K+LQ NC S+
Sbjct: 556 LKIINLSNSLNLSKTPDLTGIPNLESLILEGCTSLSKVHPSLAHHKKLQYMNLVNCKSIR 615
Query: 478 TLPREIATESLQK---------------------LIEL----------------LTGLVF 500
LP + ESL+ L+EL L L
Sbjct: 616 ILPNNLEMESLKVFTLDGCSKLEKFPDIVGNMNCLMELRLDGTGVEELSSSIHHLISLEV 675
Query: 501 LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV 560
L++N+CK L +PS+I KSL+ ++LS CS+L+N L ++ES EE D SGT IRQP
Sbjct: 676 LSMNNCKNLESIPSSIGCLKSLKKLDLSGCSELKN----LEKVESSEEFDASGTSIRQP- 730
Query: 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620
P+ F + LKV F + S + LPSLSGLCSL
Sbjct: 731 PAPIFLLKNLKVLSFDGCKRIAVSLTDQR-------------------LPSLSGLCSLEV 771
Query: 621 LNLKKLNLR--------------------RNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660
L+L NLR RNNFVSL ++N L + L L+DC+ L SL
Sbjct: 772 LDLCACNLREGALPEDIGCLSSLKSLDLSRNNFVSLPRSVNQLSGLEMLVLEDCRMLESL 831
Query: 661 SELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKL 703
E+PS ++ V ++GCTSL I D ++ +S S C+NC +L
Sbjct: 832 PEVPSKVQTVNLNGCTSLKEIPDPIKLSSSKISEFLCLNCWEL 874
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 313/931 (33%), Positives = 435/931 (46%), Gaps = 241/931 (25%)
Query: 2 VKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------- 52
+ F+D ++LE+GK +SP L +IEESR ++++FS+NYA STWCLDEL KI
Sbjct: 46 INTFKDDEKLEKGKFISPELMSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQ 105
Query: 53 ----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDR 102
P+ VRKQ F EAF+KHE F+E +KVQ WR AL E AN SGW L +
Sbjct: 106 IVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQE--DKVQKWRAALEEAANISGWDLPNT 163
Query: 103 ---HEVEFIQEIVKEISRKKGP-RTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICG 158
HE +++I ++I + G R +LV M S + K+ +L S V +GI G
Sbjct: 164 SNGHEARVMEKIAEDIMARLGSQRHASNARNLVGMESHMLKVYKMLGIGSGGVHFLGILG 223
Query: 159 MGGV---------------------------ELSEKDGLIALQKQLLSKTLMEIDIEIRN 191
M GV + S K GL LQ+ LLS+ L+ + I N
Sbjct: 224 MSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINN 283
Query: 192 DFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLR 251
F+G M K+ L+ + VL+V+DD HI QLN LAG+ WFG GSRIII T+D+HLL
Sbjct: 284 SFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYE 343
Query: 252 VDGVYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310
+ +Y+++ L++ E+L+LF + AF +P+K++ +L +++K+ DGLP AL+ LGS L+G
Sbjct: 344 TEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYG 403
Query: 311 RSVDGWRSTLERLNKHSADEILDVLEISFNG----------------------------- 341
R +D W S +ERL + +EIL LE SF G
Sbjct: 404 RGLDEWISEVERLKQIPENEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKDSVTRILE 463
Query: 342 ---------------------LKGRIEIM------------RKSPEEPGKCSRLWKVADV 368
L+GRI I R++ ++P CSRLWK D+
Sbjct: 464 SFHFCPVIGIKVLMEKCLITILQGRITIHQLIQDMGWHIVRREATDDPRMCSRLWKREDI 523
Query: 369 SHVLRRN-----------------------TAFLKMTNLRLLKIHNLQLPAGLESLSDEL 405
VL RN AF++MT LR LK N + G E L DEL
Sbjct: 524 CPVLERNLGTDKNEGMSLHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDEL 583
Query: 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKN--------------LIRTP 451
R L WHGYP KSLP+S + D+ + + RI Q WK K+ LIRTP
Sbjct: 584 RWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTP 643
Query: 452 DFTGAPNLEELILDGCK------------------RLQNCTSLTTLPREIATESLQKL-- 491
DF+ PNLE L+L+ C L+NC +L TLP+ I E L+ L
Sbjct: 644 DFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVL 703
Query: 492 -----------------------------------IELLTGLVFLNLNDCKILVRLPSTI 516
+E L+G+ +NL+ CK L LPS+I
Sbjct: 704 TGCSKLRTFPEIEEKMNCLAELYLGATSLSGLPASVENLSGVGVINLSYCKHLESLPSSI 763
Query: 517 NGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576
K L+T+++S CSKL+N+P+ LG + LE+L + T I +PS + LK
Sbjct: 764 FRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEKLHCTHTAI-HTIPSSMSLLKNLK----- 817
Query: 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN-------------- 622
R S + SM + +LSGLCSL L+
Sbjct: 818 -----RLSLRGCNALSSQVSSSSHGQKSMGVNFQNLSGLCSLIRLDLSDCDISDGGILRN 872
Query: 623 ------LKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGC 675
LK L L NNF ++ +I+ L + K L L C RL SL ELP I + H C
Sbjct: 873 LGFLSSLKVLLLDGNNFSNIPAASISRLTRLKSLALRGCGRLESLPELPPSITGIYAHDC 932
Query: 676 TSLATISDALRSCNSATSRIFCINCPKLILN 706
TSL +I + S + NC +L+ N
Sbjct: 933 TSLMSIDQLTKY--PMLSDVSFRNCHQLVKN 961
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507537|ref|XP_003624057.1| TMV resistance protein N [Medicago truncatula] gi|355499072|gb|AES80275.1| TMV resistance protein N [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 304/909 (33%), Positives = 427/909 (46%), Gaps = 239/909 (26%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ F D K+LERGK +S L AI++S F++ + S +YA STWCLDEL I
Sbjct: 53 GITTFRDDKDLERGKNISEKLINAIKDSMFAITIISPDYASSTWCLDELQMIMECSSNNN 112
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ VR Q SF EAF KH E F +++++V+ WR+A+ +VA SGW K
Sbjct: 113 LHVLPVFYGVDPSDVRHQRGSFEEAFRKHLEKFGQNSDRVERWRNAMNKVAGYSGWDSKG 172
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIG------ 155
+HE ++ I + I RK P+ ++LV + S+++++ L+ DVR IG
Sbjct: 173 QHEALLVESIAQHIHRKLVPKLSSCTENLVGIESKVEEVNKLIGMGLNDVRFIGIWGMGG 232
Query: 156 --------------------ICGMGGV-ELSEKDGLIALQKQLLSKTLMEIDIEIRNDF- 193
C + V E+SE +GL+ LQ+QLLS M I RNDF
Sbjct: 233 IGKSTIARAVYEAIRCEFQLTCFLENVREISETNGLVHLQRQLLSH--MSIS---RNDFH 287
Query: 194 ---DGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL 250
DG K I+ RR+ VL+V+DD + QL +AGK WFG GSR+II TRD+HLL T
Sbjct: 288 NLYDGKKTIQNSFRRKKVLLVLDDVNELNQLENMAGKQDWFGPGSRVIITTRDKHLLMTH 347
Query: 251 RVDGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALETLGSVLF 309
V Y+V L +EAL LF +AF G +P + Y++L K +V Y GLP ALE GS L+
Sbjct: 348 GVHKTYEVWMLFQNEALNLFCLKAFKGDKPQEGYLDLSKEVVDYTGGLPLALEVFGSYLY 407
Query: 310 GRSVDGWRSTL-------------------ERLNKHSADEILDVLEISFNGLK------- 343
GR+VD W S + E L+ D LD+ F G+K
Sbjct: 408 GRNVDLWHSAIKKIRSVPLRKIQDKLEISYESLDPMEKDVFLDI-ACFFKGMKIDKVIDI 466
Query: 344 ---------------------------------------GRIEIMRKSPEEPGKCSRLWK 364
GR + ++SP +PG+CSRLW
Sbjct: 467 LENCGYFPKIIIQVLIDRSLITLDRVNNKLGMHDLLQEMGRNIVFQESPNDPGRCSRLWS 526
Query: 365 VADVSHVLRRNT-----------------------AFLKMTNLRLLKIHNLQLPAGLESL 401
D+ VL +N AF K + L+LL ++ +QLP GL L
Sbjct: 527 KEDIDSVLTKNKGTEKISSVVLNLLQPYEARWSTEAFSKTSQLKLLNLNEVQLPLGLSCL 586
Query: 402 SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGI--------------KNL 447
L++L+W G PLK+L + ++D+ ++ + + +IE+ W G+ KNL
Sbjct: 587 PCSLKVLRWRGCPLKTLAQTNQLDEVVDIKLSHSKIEKLWHGVYFMEKLKYLNLKFSKNL 646
Query: 448 IRTPDFTGAPNLEELILDGCK------------------RLQNCTSLTTLPREIATESLQ 489
R PDF+G PNLE+LIL GC L+NC SL +LP ++ SL+
Sbjct: 647 KRLPDFSGVPNLEKLILKGCSILTEVHLSLVHHKKVVVVSLKNCKSLKSLPGKLEMSSLK 706
Query: 490 KLI-------------------------------------ELLTGLVFLNLNDCKILVRL 512
KLI L GL LNL DCK LV L
Sbjct: 707 KLILSGCSEFKFLPEFGEKMENLSILALKGTDIRKLPLSLGSLVGLTNLNLKDCKSLVCL 766
Query: 513 PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572
P TI+G SL +N+S CS+L +P+ L +++ L+EL + T I + +PS F LKV
Sbjct: 767 PDTIHGLNSLIILNISGCSRLCRLPDGLKEIQCLKELHANDTAIDE-LPSFIFYLDNLKV 825
Query: 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELN--------- 622
F + S++ WFPF+ M G S S LP S L SL LN
Sbjct: 826 LSFAGCQGPPAMSTN---WFPFNWMFGGQSASTGFRLPTSFLSLHSLKYLNLSYCNLSEE 882
Query: 623 -----------LKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVR 671
LK L+L NNFV + +I+ L + + L L+ C++L+ L ELPS I ++
Sbjct: 883 SIPNYFHHLSSLKSLDLTGNNFVIIPSSISKLSRLRFLCLNWCEQLQLLPELPSRIMQLD 942
Query: 672 VHGCTSLAT 680
C SL T
Sbjct: 943 ASNCDSLET 951
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493489|ref|XP_002264004.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 306/856 (35%), Positives = 423/856 (49%), Gaps = 198/856 (23%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ F+D+ L RG+ +S GL +AIEESRFS+++FS NYA S+WCLDEL KI
Sbjct: 49 GINTFKDNLLL-RGEKISAGLLQAIEESRFSIIIFSENYASSSWCLDELTKILECVEEGG 107
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P+ VRKQ F +AFA+HE+ +RE EKV WR ALTEVA SGW +D
Sbjct: 108 HTALPVFYNVDPSHVRKQKGCFADAFAEHEQVYREKMEKVVKWRKALTEVATISGWDSRD 167
Query: 102 RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG 161
R E E I+EIV I + +D LV M+SR++ L LL S DVR +GI GM G
Sbjct: 168 RDESEVIEEIVTRILNEPIDAFSSNVDALVGMDSRMEDLLSLLCIGSNDVRFVGIWGMAG 227
Query: 162 V---------------------------ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFD 194
+ E S++ GL LQ+ LLS+ L I+ N
Sbjct: 228 IGKTTIAEAIYDRIYTKFDGCCFLKDVREDSQRHGLTYLQETLLSRVLGGIN----NLNR 283
Query: 195 GIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG 254
GI IK L + VL+V+D+ VH ++L L G H WFG GSRIII TR++ LL +D
Sbjct: 284 GINFIKARLHSKKVLIVLDNVVHRQELEALVGSHDWFGPGSRIIITTREKRLLIEQEMDA 343
Query: 255 VYKVEKLDDDEALELFNKRAFD-GQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSV 313
+Y+VEKL+ DEAL+LF + AF P++D+++L V Y LP AL+ LGS L+ +S+
Sbjct: 344 IYEVEKLEYDEALKLFCQYAFRYKHPTEDFMQLCHHAVDYTGSLPLALKVLGSCLYRKSI 403
Query: 314 DGW-------------------RSTLERLNKHSADEILDV-------------------- 334
W +++ + L+ + + LD+
Sbjct: 404 HEWKSELDKFNQFPNKEVLNVLKTSFDGLDDNEKNMFLDIAFFYKGEDKDFVIEVLDNFF 463
Query: 335 -------------LEISFNGL-------KGRIEIMRK-SPEEPGKCSRLWKVADVSHVLR 373
+ IS N L + EI+R+ S ++PGK SRL D+ VL
Sbjct: 464 PVSEIGNLVDKSLITISDNKLYMHDLLQEMGWEIVRQESIKDPGKRSRLRVHEDIHDVLT 523
Query: 374 RNT-----------------------AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQW 410
N AF KM LRLL+ +NL L + S+ LR L W
Sbjct: 524 TNKGTEAVEGMVFDLSASKELNLSVDAFAKMNKLRLLRFYNLHLSRDFKFPSNNLRSLHW 583
Query: 411 HGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK--------------NLIRTPDFTGA 456
HGYPLKSLPS+ +K +E NMCY ++Q W+G K +L +TPDF+ A
Sbjct: 584 HGYPLKSLPSNFHPEKLVELNMCYSLLKQLWEGKKAFEKLKFIKLSHSQHLTKTPDFSAA 643
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
P L +IL+G CTSL L I L L+FLNL C L LP +I
Sbjct: 644 PKLRRIILNG------CTSLVKLHPSIGA---------LKELIFLNLEGCSKLENLPQSI 688
Query: 517 NGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576
SL+T+ LS CSKL+ +P+ LG+++ L EL+V GT I++ SI + L+
Sbjct: 689 CELISLQTLTLSGCSKLKKLPDDLGRLQCLVELNVDGTGIKEVTSSINLLTN-LEALSLA 747
Query: 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNL-------- 628
+ + S +L+ SS + L LP LSGL SL LNL NL
Sbjct: 748 GCKGGGSKSR--------NLISFRSSPAAPLQLPFLSGLYSLKSLNLSDCNLLEGALPSD 799
Query: 629 ------------RRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCT 676
+N+F++L +++ L + + L L+ CK LRSL ELPS I+ + H CT
Sbjct: 800 LSSLSSLENLYLDKNSFITLPASLSRLSRLRSLTLEHCKSLRSLPELPSSIEYLNAHSCT 859
Query: 677 SLATISDALRSCNSAT 692
SL T+ SC+S+T
Sbjct: 860 SLETL-----SCSSST 870
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| TAIR|locus:2167457 | 1191 | AT5G36930 [Arabidopsis thalian | 0.244 | 0.147 | 0.442 | 2.2e-73 | |
| TAIR|locus:2151491 | 1123 | AT5G46450 [Arabidopsis thalian | 0.208 | 0.133 | 0.350 | 1.5e-59 | |
| TAIR|locus:2129670 | 1008 | AT4G14370 [Arabidopsis thalian | 0.275 | 0.196 | 0.334 | 6.7e-58 | |
| TAIR|locus:2205804 | 1556 | AT1G27180 [Arabidopsis thalian | 0.244 | 0.113 | 0.366 | 5.6e-56 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.409 | 0.248 | 0.304 | 3.1e-55 | |
| TAIR|locus:2170488 | 1205 | AT5G46260 [Arabidopsis thalian | 0.231 | 0.138 | 0.343 | 5.7e-55 | |
| TAIR|locus:2195478 | 1031 | AT1G63870 [Arabidopsis thalian | 0.233 | 0.162 | 0.327 | 8.1e-55 | |
| TAIR|locus:2026649 | 966 | AT1G63730 [Arabidopsis thalian | 0.233 | 0.173 | 0.353 | 1.3e-54 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.231 | 0.137 | 0.350 | 5.4e-54 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.259 | 0.153 | 0.368 | 1.1e-53 |
| TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 2.2e-73, Sum P(4) = 2.2e-73
Identities = 81/183 (44%), Positives = 109/183 (59%)
Query: 163 ELSEK-DGLIALQKQLLSKTLMEIDIEIRNDFDGIK-MIKRELRRRNVLVVIDDAVHIRQ 220
E S+K +G LQ QLLS L DIE F G+ +K R + VL+V+DD + Q
Sbjct: 251 EYSKKPEGRTHLQHQLLSDILRRNDIE----FKGLDHAVKERFRSKRVLLVVDDVDDVHQ 306
Query: 221 LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAF-DGQP 279
LN A FG GSRIII TR+ HLL+ LR +G Y ++LD DE+LELF+ AF +P
Sbjct: 307 LNSAAIDRDCFGHGSRIIITTRNMHLLKQLRAEGSYSPKELDGDESLELFSWHAFRTSEP 366
Query: 280 SKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISF 339
K++++ + +V Y GLP A+E LG+ L RS+ W STL+ L + D I L+ISF
Sbjct: 367 PKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERSIREWESTLKLLKRIPNDNIQAKLQISF 426
Query: 340 NGL 342
N L
Sbjct: 427 NAL 429
|
|
| TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 1.5e-59, Sum P(4) = 1.5e-59
Identities = 53/151 (35%), Positives = 83/151 (54%)
Query: 196 IKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGV 255
I ++ L+ + VL++IDD L+ L G+ WFGSGSRII+ T+++H LR +D V
Sbjct: 283 IGAMEERLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAHGIDHV 342
Query: 256 YKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVD 314
Y+ ++ ALE+F + AF P ++EL + A LP L+ LGS L GR ++
Sbjct: 343 YEACLPSEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIE 402
Query: 315 GWRSTLERLNKHSADEILDVLEISFNGLKGR 345
W + RL +I L +S++GL +
Sbjct: 403 DWMDMMPRLQNDLDGKIEKTLRVSYDGLNNK 433
|
|
| TAIR|locus:2129670 AT4G14370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 6.7e-58, Sum P(5) = 6.7e-58
Identities = 68/203 (33%), Positives = 101/203 (49%)
Query: 142 LLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKR 201
LLL + + + G L E + LQ+QLLSK L + + I + + I+
Sbjct: 189 LLLSSFQLSCFVENLSGSDNRGLDEYGFKLRLQEQLLSKILNQNGMRIYH----LGAIQE 244
Query: 202 ELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKL 261
L + VL+V+DD ++QL LA + SWFG GSRII+ T D+ LL ++ Y V
Sbjct: 245 RLCDQKVLIVLDDVNDLKQLEALANETSWFGPGSRIIVTTEDKGLLEQHGINKTYHVGFP 304
Query: 262 DDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTL 320
+EALE+F AF P + +L KR+ D LP L +GS L G+ D W + L
Sbjct: 305 SIEEALEIFCIYAFRKSSPPDGFKKLTKRVTNVFDNLPLGLRVMGSSLRGKGEDEWEALL 364
Query: 321 ERLNKHSADEILDVLEISFNGLK 343
+RL I L + ++ L+
Sbjct: 365 DRLETSLDRNIEGALRVGYDSLQ 387
|
|
| TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 5.6e-56, Sum P(6) = 5.6e-56
Identities = 66/180 (36%), Positives = 108/180 (60%)
Query: 165 SEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRL 224
S++DGL+ LQK L+ K L + EI + G++ IK + + ++VV+DD HI Q+N L
Sbjct: 427 SDQDGLVNLQKTLI-KELFRLVPEIEDVSIGLEKIKENVHEKKIIVVLDDVDHIDQVNAL 485
Query: 225 AGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAF--DGQPSKD 282
G+ SW+G GS I+I TRD +L L V+ Y+V+ L + +AL+LF+ + + P++
Sbjct: 486 VGETSWYGEGSLIVITTRDSEILSKLSVNQQYEVKCLTEPQALKLFSFYSLRKEKPPTQG 545
Query: 283 YVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGL 342
+EL K+I + LP A++ GS + + + W+ LE+L K D++ VL +SF L
Sbjct: 546 LLELSKKIAEVTGLLPLAVKVFGSHFYDKDENEWQVELEKL-KTQQDKLHGVLALSFKSL 604
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 3.1e-55, Sum P(4) = 3.1e-55
Identities = 111/364 (30%), Positives = 162/364 (44%)
Query: 377 AFLKMTNLRLLKIHN---------LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKT 427
AF +M NL+ L+ H+ L LP GL +S +LRLL W YPL LP +
Sbjct: 577 AFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFL 636
Query: 428 LECNMCYRRIEQFWKG------IK--------NLIRTPDFTGAPNLEELILDGCKRLQNC 473
++ NM +E+ W G +K NL PDF+ A NL+EL RL NC
Sbjct: 637 VKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQEL------RLINC 690
Query: 474 TSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533
SL LP I T L+ L+L DC LV+LPS+I +L+ + L+RCS L
Sbjct: 691 LSLVELPSSIGNA---------TNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741
Query: 534 ENMPESLGQMESLEELDVSGTVIRQPVPS-IFFPSRILKVYL--------FVDTRDHRTS 584
+P S G + SL+EL++SG +PS I + KVY + + T+
Sbjct: 742 VKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTN 801
Query: 585 SSSWHLWFPFSLMQKGSSDSMALMLP--SLSGLCSLTEXXXXXXXXXXXXFVSLRGTINH 642
HL SLM+ SS L +LSG SL + S+ IN
Sbjct: 802 LKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVK------------LPSIGNVIN- 848
Query: 643 LPKFKHLKLDDCKRLRSLS---ELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699
+ L L DC L L E +++ + + GC++L + ++ + + S ++
Sbjct: 849 ---LQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQS-LYLNG 904
Query: 700 CPKL 703
C L
Sbjct: 905 CSSL 908
|
|
| TAIR|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 5.7e-55, Sum P(3) = 5.7e-55
Identities = 59/172 (34%), Positives = 97/172 (56%)
Query: 173 LQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFG 232
LQ+ LS+ L +I+I D + ++ L+ + VL++IDD L+ L GK WFG
Sbjct: 263 LQESFLSEILRMPNIKI----DHLGVLGERLQHQKVLIIIDDVDDQVILDSLVGKTQWFG 318
Query: 233 SGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQ-PSKDYVELIKRIV 291
+GSRII+ T ++H L +D +Y+V ++ AL + + AF + P + + L+ ++
Sbjct: 319 NGSRIIVVTNNKHFLTAHGIDRMYEVSLPTEEHALAMLCQSAFKKKSPPEGFEMLVVQVA 378
Query: 292 KYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGLK 343
+YA LP L+ LGS L G+ + W L RL D+I +L IS++GL+
Sbjct: 379 RYAGSLPLVLKVLGSYLSGKDKEYWIDMLPRLQNGLNDKIERILRISYDGLE 430
|
|
| TAIR|locus:2195478 AT1G63870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 8.1e-55, Sum P(5) = 8.1e-55
Identities = 57/174 (32%), Positives = 95/174 (54%)
Query: 171 IALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSW 230
+ LQ+Q L+K L I I + G+ I+ L ++ VL+++DD HI QL LA + +W
Sbjct: 259 LRLQEQFLAKVLNHDGIRICHS--GV--IEERLCKQRVLIILDDVNHIMQLEALANETTW 314
Query: 231 FGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQP-SKDYVELIKR 289
FGSGSRI++ T ++ +L+ ++ +Y V D++A E+ + AF S + +L +R
Sbjct: 315 FGSGSRIVVTTENKEILQQHGINDLYHVGFPSDEQAFEILCRYAFRKTTLSHGFEKLARR 374
Query: 290 IVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKH-SADEILDVLEISFNGL 342
+ K LP L LGS L G++ + W + RL +I +VL + + L
Sbjct: 375 VTKLCGNLPLGLRVLGSSLRGKNEEEWEEVIRRLETILDHQDIEEVLRVGYGSL 428
|
|
| TAIR|locus:2026649 AT1G63730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.3e-54, Sum P(5) = 1.3e-54
Identities = 63/178 (35%), Positives = 98/178 (55%)
Query: 169 GL-IALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGK 227
GL + LQ+QLLSK L + D+ I + + I L +NVL+++D ++QL L +
Sbjct: 257 GLKLCLQQQLLSKILNQNDLRIFH----LGAIPERLCDQNVLIILDGVDDLQQLEALTNE 312
Query: 228 HSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDY--VE 285
SWFG GSRII+ T D+ LL ++ Y V+ EA ++F + AF Q S Y +
Sbjct: 313 TSWFGPGSRIIVTTEDQELLEQHDINNTYHVDFPTIKEARKIFCRSAFR-QSSAPYGFEK 371
Query: 286 LIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILD-VLEISFNGL 342
L++R++K LP L +GS L + D W S L R ++S D ++ VL + ++ L
Sbjct: 372 LVERVLKLCSNLPLGLRVMGSSLRRKKEDDWESILHR-QENSLDRKIEGVLRVGYDNL 428
|
|
| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 5.4e-54, Sum P(5) = 5.4e-54
Identities = 61/174 (35%), Positives = 95/174 (54%)
Query: 171 IALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSW 230
+ LQ+Q LSK L DIEI + +++++ L + VLVV+DD QL+ LA + W
Sbjct: 305 LILQRQFLSKILDHKDIEIPH----LRVLQERLYNKKVLVVLDDVDQSVQLDALAKETRW 360
Query: 231 FGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQ--PSKDYVELIK 288
FG SRI+I T+D LL+ R++ +YKV+ + D+AL++F AF GQ P + +L +
Sbjct: 361 FGPRSRILITTQDRKLLKAHRINNIYKVDLPNSDDALQIFCMYAF-GQKTPYDGFYKLAR 419
Query: 289 RIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGL 342
++ P L +GS S WR + RL +I VL+ S++ L
Sbjct: 420 KVTWLVGNFPLGLRVVGSYFREMSKQEWRKEIPRLRARLDGKIESVLKFSYDAL 473
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| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 1.1e-53, Sum P(4) = 1.1e-53
Identities = 70/190 (36%), Positives = 106/190 (55%)
Query: 155 GICGMGGV-ELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVID 213
G C + + E S + GL +L ++L S L + D+EI + + +R L+ + +L+V+D
Sbjct: 239 GSCFLTNIRENSGRSGLESLLQKLFSTVLNDRDLEIGAPGNAHERFERRLKSKRLLIVLD 298
Query: 214 DAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDDEALELFNKR 273
D +Q+ L G W+ GSRIII TRD L+ T++ Y + KL+D EAL+LF+
Sbjct: 299 DVNDEKQIRYLMGHCKWYQGGSRIIITTRDSKLIETIK-GRKYVLPKLNDREALKLFSLN 357
Query: 274 AFDGQ-PSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEIL 332
AF P K++ L ++ YA G P AL+ LGS L R W + L+RL S +I
Sbjct: 358 AFSNSFPLKEFEGLTNMVLDYAKGHPLALKVLGSDLCERDDLYWEAKLDRLKSRSHGDIY 417
Query: 333 DVLEISFNGL 342
+VLE S+ L
Sbjct: 418 EVLETSYEEL 427
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00770103 | tir-nbs-lrr resistance protein (1121 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 720 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-75 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 7e-22 | |
| pfam01582 | 135 | pfam01582, TIR, TIR domain | 6e-17 | |
| smart00255 | 140 | smart00255, TIR, Toll - interleukin 1 - resistance | 4e-15 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 1e-75
Identities = 244/841 (29%), Positives = 359/841 (42%), Gaps = 214/841 (25%)
Query: 5 FEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI------------ 52
F+D+ E+ER +++ P L +AI +SR +VVVFS+NYA S+WCL+EL +I
Sbjct: 44 FKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVI 102
Query: 53 -------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQN-WRHALTEVANPSGWHLKD-RH 103
P+ VRKQT F EAF K + TE + W+ ALT+VAN G+H ++ +
Sbjct: 103 PVFYGLDPSHVRKQTGDFGEAFEK---TCQNKTEDEKIQWKQALTDVANILGYHSQNWPN 159
Query: 104 EVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV- 162
E + I+EI ++ K +D V + + K+ LL ES +VRM+GI G G+
Sbjct: 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIG 219
Query: 163 ----------ELSEK---------------------------DGLIALQKQLLSKTLMEI 185
LS + + + LQ+ LS+ L +
Sbjct: 220 KTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK 279
Query: 186 DIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEH 245
DI+I + ++ L+ R VL+ IDD L+ LAG+ WFGSGSRII+ T+D+H
Sbjct: 280 DIKI----YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335
Query: 246 LLRTLRVDGVYKVEKLDDDEALELFNKRAF-DGQPSKDYVELIKRIVKYADGLPFALETL 304
LR +D +Y+V ++ ALE+F + AF P ++EL + A LP L L
Sbjct: 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395
Query: 305 GSVLFGR--------------SVDG-----WRSTLERLNKHSADEILDVLEISFN----- 340
GS L GR +DG R + + LN I + FN
Sbjct: 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455
Query: 341 ---------------GLKGRI-----------------------EIMRKSPEEPGKCSRL 362
GLK + EI+R EPG+ L
Sbjct: 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFL 515
Query: 363 WKVADVSHVLRRNT-----------------------AFLKMTNLRLLKIHN-------- 391
D+ VL NT AF M NL LK +
Sbjct: 516 VDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE 575
Query: 392 --LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGI----- 444
LP G + L +LRLL+W YPL+ +PS+ + ++ M ++E+ W G+
Sbjct: 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTG 635
Query: 445 ---------KNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL 495
KNL PD + A NLE L +L +C+SL LP I + L KL +
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMATNLETL------KLSDCSSLVELPSSI--QYLNKLED-- 685
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
L+++ C+ L LP+ IN KSL +NLS CS+L++ P+ ++ LD+ T
Sbjct: 686 -----LDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA 736
Query: 556 IRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615
I + FPS + L S W P + + S S+ + LS +
Sbjct: 737 IEE------FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF--LSDI 788
Query: 616 CSLTEL-----NLKKLN----LRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSD 666
SL EL NL KL N +L IN L + L L C RLR+ ++ ++
Sbjct: 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTN 847
Query: 667 I 667
I
Sbjct: 848 I 848
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 7e-22
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 144 LDAESRDVRMIGICGMGG-------------------------VELSEKDGLIALQKQLL 178
L S ++ ++GI GMGG V +S+ LQK +L
Sbjct: 12 LLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDIL 71
Query: 179 SKTLMEIDIEIRNDFDGI--KMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSR 236
+ L D + + IK L R+ L+V+DD +++ +GSR
Sbjct: 72 -QELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSR 130
Query: 237 IIIPTRDEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQ--PSKDYVELIKRIVKY 293
+I+ TR E + + ++VE L+ +E+ ELF+ + F+ + P + E+ K IV+
Sbjct: 131 VIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEK 190
Query: 294 ADGLPFALETLGSVLFGRS-VDGWRSTLERLNKHSA-----DEILDVLEISFNGLK 343
GLP AL+ LG +L +S V W LE+LN A +E+L +L +S++ L
Sbjct: 191 CKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLP 246
|
Length = 285 |
| >gnl|CDD|216585 pfam01582, TIR, TIR domain | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 6e-17
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 21/110 (19%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+K+ D ++ G+++ LF+AIE+SR ++V+FS NYA S WCLDEL +I
Sbjct: 26 GIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGG 85
Query: 53 -------------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALT 89
P+ VR Q+ F +AF K + + +K++ W+ AL
Sbjct: 86 GKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135
|
The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135 |
| >gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-15
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G+ +F D E G + +AIE+SR ++VV S NYA S WCLDEL
Sbjct: 30 GLCVFIDDFEPGGGDLEE--IDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEG 87
Query: 53 ------------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANP 94
P+ VRKQ F + F K+ + E EK Q W+ AL V +
Sbjct: 88 GLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPED-EKEQFWKKALYAVPSK 140
|
Length = 140 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 58/207 (28%)
Query: 383 NLRLLKIHNLQLPAGLESLSDELRLLQW---HGYPLKSLPSSMEMDKTLECNMCYRRIEQ 439
NL+ L NL + L+S D + W ++ PS++ ++ E +C + E+
Sbjct: 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761
Query: 440 FWKGIKNLIRTPDFTG-APNLEELILDG------------------CKRLQNCTSLTTLP 480
W+ ++ TP T +P+L L L ++NC +L TLP
Sbjct: 762 LWERVQ--PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819
Query: 481 REIATESLQKL----------------------------------IELLTGLVFLNLNDC 506
I ESL+ L IE + L FL++N C
Sbjct: 820 TGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879
Query: 507 KILVRLPSTINGWKSLRTVNLSRCSKL 533
L R+ I+ K L TV+ S C L
Sbjct: 880 NNLQRVSLNISKLKHLETVDFSDCGAL 906
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 386 LLKIHNLQLPAGLESLS---DELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWK 442
+ ++ L L+ + ++ PL L S + L N +IE
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIP-------PLIGLLKSNLKELDLSDN----KIESLPS 157
Query: 443 GIKNLIRTPDFTGAPNLEELILDGC------KRLQNCTSLTTLPREIA-TESLQKLIELL 495
++NL PNL+ L L K L N ++L L L IELL
Sbjct: 158 PLRNL---------PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
+ L L+L++ I+ L S+++ K+L + LS +KLE++PES+G + +LE LD+S
Sbjct: 209 SALEELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQ 266
Query: 556 IRQP 559
I
Sbjct: 267 ISSI 270
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.97 | |
| PLN03194 | 187 | putative disease resistance protein; Provisional | 99.94 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.89 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.89 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.84 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.82 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.74 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.73 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.72 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.66 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.66 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.62 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.57 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.57 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.55 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.49 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.29 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.19 | |
| PF01582 | 141 | TIR: TIR domain; InterPro: IPR000157 In Drosophila | 99.14 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.08 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.03 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.0 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.88 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.71 | |
| smart00255 | 140 | TIR Toll - interleukin 1 - resistance. | 98.71 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.68 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.66 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.59 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.58 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.52 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.51 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.5 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.47 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.43 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.42 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.41 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.39 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.34 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.33 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.01 | |
| PF13676 | 102 | TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ | 97.98 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.83 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.79 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 97.77 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.71 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.66 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.6 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 97.59 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.58 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.54 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.49 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 97.47 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.43 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.28 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.17 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 97.08 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.07 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.06 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 97.0 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 96.95 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 96.9 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.51 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 96.49 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.33 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 96.31 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.25 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.2 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 95.96 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.91 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 95.79 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 95.75 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.68 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.62 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.44 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 95.4 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.2 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 95.07 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 94.9 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 94.83 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.82 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.46 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.44 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.44 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.38 | |
| PRK09087 | 226 | hypothetical protein; Validated | 94.33 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 94.26 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 94.16 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 93.97 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.94 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 93.76 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 93.57 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 93.41 | |
| PTZ00202 | 550 | tuzin; Provisional | 93.4 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 93.37 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 93.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 93.26 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.15 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 93.09 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 93.08 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.06 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.87 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 92.68 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 92.56 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 92.45 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 92.36 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 92.34 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 92.29 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.26 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.15 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.04 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 91.92 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 91.83 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.79 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 91.51 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.16 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 90.89 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 90.79 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 90.53 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 90.53 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 90.48 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 90.47 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 90.26 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 90.23 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 90.19 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 90.07 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 89.86 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 89.79 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 89.54 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.54 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 89.26 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 89.22 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 89.07 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 89.05 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 88.92 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 88.68 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 88.58 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.15 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.15 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 87.88 | |
| PRK06620 | 214 | hypothetical protein; Validated | 87.65 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 87.46 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 87.42 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 87.4 | |
| PF08937 | 130 | DUF1863: MTH538 TIR-like domain (DUF1863); InterPr | 87.25 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 86.92 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.89 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 86.57 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 86.02 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 85.93 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 85.67 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 85.6 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 85.56 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 85.19 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 84.6 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 84.37 | |
| COG3903 | 414 | Predicted ATPase [General function prediction only | 83.99 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 83.76 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 83.72 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 83.44 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 82.97 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 82.76 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 82.5 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 81.85 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 81.31 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 81.05 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 80.47 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 80.17 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-91 Score=839.73 Aligned_cols=655 Identities=34% Similarity=0.568 Sum_probs=535.8
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||.||+|+ ++++|+.|++++++||++|+|||||||++||+|+||||||++| |+|||+|+|
T Consensus 40 ~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g 118 (1153)
T PLN03210 40 LIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118 (1153)
T ss_pred CCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccc
Confidence 89999998 7999999999999999999999999999999999999999999 999999999
Q ss_pred hHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccC-hhHHHHHHHHHHhhhhccCCCccCCCCCccccchhHHHH
Q 047161 62 SFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD-RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKL 140 (720)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~-~~e~~~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i 140 (720)
+|++||.+|+++. +.+++++||+||++||+++||++.. ++|+++|++||++|.+++..+++.+.+++|||+++++++
T Consensus 119 ~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l 196 (1153)
T PLN03210 119 DFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKM 196 (1153)
T ss_pred hHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHH
Confidence 9999999998753 4678999999999999999999876 889999999999999999988888889999999999999
Q ss_pred HHhhhccCCCeEEEEEecCCCccccchhc--------------------------------------HHHHHHHHHHhhh
Q 047161 141 RLLLDAESRDVRMIGICGMGGVELSEKDG--------------------------------------LIALQKQLLSKTL 182 (720)
Q Consensus 141 ~~~L~~~~~~~~vi~I~G~gGi~vs~~~~--------------------------------------~~~~~~~il~~~~ 182 (720)
..+|..+.++++|||||||||++.++-+. ...++++++.+++
T Consensus 197 ~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il 276 (1153)
T PLN03210 197 SSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEIL 276 (1153)
T ss_pred HHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHh
Confidence 99998788899999999999992221100 1234455555544
Q ss_pred hcccceeccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhccccceEecCCCC
Q 047161 183 MEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLD 262 (720)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~ 262 (720)
........ ....+++++++||+||||||||+.++|+.+.....|+++|||||||||+++++..++++++|+|+.|+
T Consensus 277 ~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~ 352 (1153)
T PLN03210 277 DKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPS 352 (1153)
T ss_pred CCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCC
Confidence 33322221 12568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhcCCchhHHHHHHhhhcC
Q 047161 263 DDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNG 341 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~~~~~~il~~L~lSyn~ 341 (720)
.+|||+||+++||+. .++.++++++++|+++|+|+|||++++|+.|++++..+|++++++++..++.+|.++|++||++
T Consensus 353 ~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~ 432 (1153)
T PLN03210 353 NELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDG 432 (1153)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhc
Confidence 999999999999988 6777899999999999999999999999999999999999999999988889999999999999
Q ss_pred Cchh-----hhhhhcCC---------------------------------------------------------CCCCCc
Q 047161 342 LKGR-----IEIMRKSP---------------------------------------------------------EEPGKC 359 (720)
Q Consensus 342 L~~~-----~~~~~~~p---------------------------------------------------------~~~~~l 359 (720)
|++. |.+++-|+ .+.++.
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r 512 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGER 512 (1153)
T ss_pred cCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcc
Confidence 9653 11111111 223455
Q ss_pred cccchhhhhHHHHhcCc-----------------------chhccCCcceEEEecc----------ccCCcccCccccce
Q 047161 360 SRLWKVADVSHVLRRNT-----------------------AFLKMTNLRLLKIHNL----------QLPAGLESLSDELR 406 (720)
Q Consensus 360 ~~Lw~~~~~~~~~~~~~-----------------------~~~~l~~L~~L~l~~~----------~l~~~~~~l~~~l~ 406 (720)
.++|..+++...+...+ +|.+|.+|++|++..+ .+|.++..++..++
T Consensus 513 ~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr 592 (1153)
T PLN03210 513 EFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLR 592 (1153)
T ss_pred eeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccE
Confidence 67777777666554321 6899999999999654 35677888899999
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhcc--------------CccccCCCCCCCCceeeecCCCCCCCC
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCKRLQN 472 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~--------------~l~~~~~~~~l~~L~~L~L~~~~~l~~ 472 (720)
.|.|.+|+++.+|..+...+++.|++.++++..+|.+.. .+..+|+++.+++|+.|+|++|..+
T Consensus 593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-- 670 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-- 670 (1153)
T ss_pred EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc--
Confidence 999999999999999999999999999999999987643 2344556666667777777666543
Q ss_pred CCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEecc
Q 047161 473 CTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVS 552 (720)
Q Consensus 473 ~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~ 552 (720)
..+|.. ++++++|++|++++|..++.+|..+ ++++|++|++++|..++.+|.. ..+|++|+++
T Consensus 671 ----~~lp~s---------i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 671 ----VELPSS---------IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred ----cccchh---------hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 556655 8889999999999988888899877 7899999999999888888754 3567888888
Q ss_pred CcccccCCcccc-----------------------------CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 553 GTVIRQPVPSIF-----------------------------FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 553 ~n~l~~~~~~~~-----------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+|.+..+|.... ..+++|+.|++++|......+..+..+..|+.+.+..+.
T Consensus 734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 888776664321 112456667776665555556667788888888887654
Q ss_pred cccccCCCCCCCCCCCcc----------------cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---
Q 047161 604 SMALMLPSLSGLCSLTEL----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--- 664 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L----------------~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--- 664 (720)
.... +|...++++|+.| +|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+
T Consensus 814 ~L~~-LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 814 NLET-LPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred CcCe-eCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 3322 2221133344333 4578999999999999999999999999999999999988644
Q ss_pred cccceEeeecCcccccch
Q 047161 665 SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~lp 682 (720)
++|+.|++.+|.+|..++
T Consensus 893 ~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 893 KHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCeeecCCCccccccc
Confidence 568888999999998765
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-54 Score=488.17 Aligned_cols=523 Identities=22% Similarity=0.315 Sum_probs=367.6
Q ss_pred cccchhHHHHHHhhhccCCCeEEEEEecCCCc--------------------------cccchhcHHHHHHHHHHhhhhc
Q 047161 131 VEMNSRLKKLRLLLDAESRDVRMIGICGMGGV--------------------------ELSEKDGLIALQKQLLSKTLME 184 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi--------------------------~vs~~~~~~~~~~~il~~~~~~ 184 (720)
||.+..++++.+.|..++. .+|||+||||+ +||+.|+...++++|+..+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~- 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL- 237 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc-
Confidence 9999999999999975444 99999999999 789999999999999998433
Q ss_pred cccee--ccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhh-ccccceEecCCC
Q 047161 185 IDIEI--RNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRT-LRVDGVYKVEKL 261 (720)
Q Consensus 185 ~~~~~--~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~-~~~~~~~~l~~L 261 (720)
..... .+.++.+.+|.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.|+.. |+++..++++.|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 22222 233688899999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCC-CHHHHHHHHhhhhcC-------CchhH
Q 047161 262 DDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALETLGSVLFGR-SVDGWRSTLERLNKH-------SADEI 331 (720)
Q Consensus 262 ~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k-~~~~W~~~l~~l~~~-------~~~~i 331 (720)
+.+|||.||++.||.. ...+.+.++|++++++|+|+|||++++|+.|+.| +.++|+.+.+.++.. ..+.|
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 9999999999999988 4445599999999999999999999999999985 778999999977654 24679
Q ss_pred HHHHHhhhcCCchh----hhhhhcCCCCCC----CccccchhhhhHHHHhcCc--------chhc----------c--CC
Q 047161 332 LDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVADVSHVLRRNT--------AFLK----------M--TN 383 (720)
Q Consensus 332 l~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~~~~~~~~~~~--------~~~~----------l--~~ 383 (720)
+++|++||++|+.+ |+||+.||+++. .++.+|+++||++...... .++. - .+
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 99999999999964 999999999974 8999999999987733211 1110 0 34
Q ss_pred cceEEEeccccC------C---------------cccCc-----cccceEEEecCCCCCCCCCCCCCCcceEeeCCCCc-
Q 047161 384 LRLLKIHNLQLP------A---------------GLESL-----SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR- 436 (720)
Q Consensus 384 L~~L~l~~~~l~------~---------------~~~~l-----~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~- 436 (720)
....+||+.... . +.... ....|...+.+|.+..++......++++|-+..+.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 567777764220 0 11111 12456777777777777776666667777666664
Q ss_pred -hhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC
Q 047161 437 -IEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPST 515 (720)
Q Consensus 437 -i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~ 515 (720)
+...... .|..++.|++|||++|..+ .+||.. |+.|-+||||+++++. +..+|.+
T Consensus 558 ~l~~is~~--------ff~~m~~LrVLDLs~~~~l------~~LP~~---------I~~Li~LryL~L~~t~-I~~LP~~ 613 (889)
T KOG4658|consen 558 WLLEISGE--------FFRSLPLLRVLDLSGNSSL------SKLPSS---------IGELVHLRYLDLSDTG-ISHLPSG 613 (889)
T ss_pred hhhhcCHH--------HHhhCcceEEEECCCCCcc------CcCChH---------HhhhhhhhcccccCCC-ccccchH
Confidence 2222111 2677888888888887654 677777 8888888888888887 6688888
Q ss_pred CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc--cccCCcCCceEEEeecCCCCCCCCCccccccc
Q 047161 516 INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP--SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP 593 (720)
Q Consensus 516 i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 593 (720)
+++|..|.+|++..+..+..+|.....|++|++|.+.......... .....+.+|+.+....... .+ ...+..+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-~e~l~~~~~ 691 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL-LEDLLGMTR 691 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh-HhhhhhhHH
Confidence 8888888888888877677777767778888888887654221111 1112224444444422211 00 011112222
Q ss_pred ccccccC---CCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cc-----ccC-CCCCceeeccccccccccC--
Q 047161 594 FSLMQKG---SSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GT-----INH-LPKFKHLKLDDCKRLRSLS-- 661 (720)
Q Consensus 594 l~~l~l~---~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~-----i~~-l~~L~~L~L~~c~~L~~lp-- 661 (720)
+...... ...........+..+.+| +.|.+.++.+.+.. .+ ... ++++..+.+.+|..++.+.
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L-----~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISSLGSLGNL-----EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HHHHhHhhhhcccccceeecccccccCc-----ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 2111100 111112223334555555 44444444443211 11 111 4456666666666555554
Q ss_pred CcccccceEeeecCcccccchhhccC
Q 047161 662 ELPSDIKKVRVHGCTSLATISDALRS 687 (720)
Q Consensus 662 ~lp~~L~~L~l~~c~~L~~lp~~~~~ 687 (720)
.+|++|+.|.+..|..++.+.+....
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHH
Confidence 35677888888887777666543333
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=274.17 Aligned_cols=239 Identities=31% Similarity=0.475 Sum_probs=186.2
Q ss_pred cchhHHHHHHhhhccCCCeEEEEEecCCCc-------------------------cccchhcHHHHHHHHHHhhhhccc-
Q 047161 133 MNSRLKKLRLLLDAESRDVRMIGICGMGGV-------------------------ELSEKDGLIALQKQLLSKTLMEID- 186 (720)
Q Consensus 133 ~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi-------------------------~vs~~~~~~~~~~~il~~~~~~~~- 186 (720)
||.++++|.+.|....++.++|+|+||||+ .++...+...+.++|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 688999999999876689999999999999 234445557788888888433311
Q ss_pred c-eeccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhccc-cceEecCCCCHH
Q 047161 187 I-EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV-DGVYKVEKLDDD 264 (720)
Q Consensus 187 ~-~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-~~~~~l~~L~~~ 264 (720)
. ...+.......+++.|+++++||||||||+..+|+.+...++.++.||+||||||+..|+..++. ...|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 33566678899999999999999999999999999999888888889999999999999988765 679999999999
Q ss_pred HHHHHHHHHhcCCC--CCchHHHHHHHHHHHhCCCchHHHHhhhhccCC-CHHHHHHHHhhhhcC------CchhHHHHH
Q 047161 265 EALELFNKRAFDGQ--PSKDYVELIKRIVKYADGLPFALETLGSVLFGR-SVDGWRSTLERLNKH------SADEILDVL 335 (720)
Q Consensus 265 ~s~~Lf~~~af~~~--~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k-~~~~W~~~l~~l~~~------~~~~il~~L 335 (720)
||++||.+.++... ..+...+.+++|+++|+|+|||++++|++|+.+ +..+|+++++++... ....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998763 445567889999999999999999999999653 678999999876543 247799999
Q ss_pred HhhhcCCchh----hhhhhcCCCCCC----CccccchhhhhHHH
Q 047161 336 EISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVADVSHV 371 (720)
Q Consensus 336 ~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~~~~~~ 371 (720)
.+||+.|+.. +.+++.||.+.. .++++|.+++++..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999987 789999998754 89999999998643
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN03194 putative disease resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=214.80 Aligned_cols=107 Identities=24% Similarity=0.380 Sum_probs=97.8
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc---------------Ccccccc-cchHH
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI---------------PTVVRKQ-TRSFH 64 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i---------------p~~vr~~-~~~~~ 64 (720)
||+||+|++++++|+.|.++|.+||++|+++|||||++||+|+|||+||++| |+|||+| .|.
T Consensus 54 GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-- 131 (187)
T PLN03194 54 NLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGT-- 131 (187)
T ss_pred CCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCC--
Confidence 8999999999999999999999999999999999999999999999999999 9999997 433
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHhccCCccccc--ChhHHHHHHHHHHhhhhccC
Q 047161 65 EAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLK--DRHEVEFIQEIVKEISRKKG 120 (720)
Q Consensus 65 ~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~--~~~e~~~i~~i~~~i~~~~~ 120 (720)
.+.++|++||+||++||+++|+++. +++|+++|++|++.|.+++.
T Consensus 132 -----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 132 -----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLI 178 (187)
T ss_pred -----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2357899999999999999998775 48899999999999987753
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=254.21 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=199.6
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEecccc----CCcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQL----PAGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~l 405 (720)
++.|++++|.+.+.. |..++.+.+|..++...+.+.+. ..+.++++|++|++++|.+ |..+..+ ..+
T Consensus 142 L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L 214 (968)
T PLN00113 142 LETLDLSNNMLSGEI------PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSL 214 (968)
T ss_pred CCEEECcCCcccccC------ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCc
Confidence 455666666665443 55566666666665555544322 2566777777777776654 2333333 346
Q ss_pred eEEEecCCCCC-CCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC-------CCCCCCC
Q 047161 406 RLLQWHGYPLK-SLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR-------LQNCTSL 476 (720)
Q Consensus 406 ~~L~~~~~~~~-~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~-------l~~~~~L 476 (720)
+.|++++|.+. .+|..+. ..+++.|++.+|++... .+..++.+++|++|++++|.. +.++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP--------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc--------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 77777776665 4555443 45666777766655321 122356666777777766641 1222233
Q ss_pred ccc--CccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc
Q 047161 477 TTL--PREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554 (720)
Q Consensus 477 ~~l--p~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n 554 (720)
+.+ ..+...+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 322 112222334444666666777777666666666666666677777777766666666666666677777777777
Q ss_pred ccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc
Q 047161 555 VIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV 634 (720)
Q Consensus 555 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~ 634 (720)
.+.+..|..+..+++|+.|++.+|.+.+..+..+..+..++.+.+..+......+..+..+++| +.|++++|.+.
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-----~~L~Ls~N~l~ 441 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-----YFLDISNNNLQ 441 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-----CEEECcCCccc
Confidence 6665544444444666777776666666666666666677777776666554444445666655 44555555554
Q ss_pred c-ccccccCCCCCceeeccccccccccCCc--------------------------ccccceEeeecCcccccchhhccC
Q 047161 635 S-LRGTINHLPKFKHLKLDDCKRLRSLSEL--------------------------PSDIKKVRVHGCTSLATISDALRS 687 (720)
Q Consensus 635 ~-lp~~i~~l~~L~~L~L~~c~~L~~lp~l--------------------------p~~L~~L~l~~c~~L~~lp~~~~~ 687 (720)
. +|..+..+++|+.|++++|.....+|.. .++|+.|++++|.....+|..+.+
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 2 3334444555555555555433222221 134666666666666666766777
Q ss_pred chhHhhhhhhcc
Q 047161 688 CNSATSRIFCIN 699 (720)
Q Consensus 688 ~~~L~~l~~~~n 699 (720)
+++|+.|++++|
T Consensus 522 l~~L~~L~Ls~N 533 (968)
T PLN00113 522 CKKLVSLDLSHN 533 (968)
T ss_pred ccCCCEEECCCC
Confidence 777777666544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=253.75 Aligned_cols=207 Identities=17% Similarity=0.146 Sum_probs=106.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 45555555555555554445555555555555555555544445555555555555555555555544444333335555
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCccc-------------------ccEEECCCCC
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN-------------------LKKLNLRRNN 632 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~-------------------L~~L~Ls~n~ 632 (720)
.|++.+|.+.+..+..+..+..|+.+.+..+......+..++.+++|+.|+ |+.|++++|.
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 555555555444444444555555555544443332222344444432221 1445555555
Q ss_pred Cc-cccccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhhhc
Q 047161 633 FV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIFCI 698 (720)
Q Consensus 633 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~ 698 (720)
+. .+|.++..+++|+.|++++|.....+|.. .++|+.|++++|.....+|..+..+++|+.|++..
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 54 44555666666666666666433333321 13466666666665555666666666666655543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-24 Score=224.03 Aligned_cols=339 Identities=23% Similarity=0.269 Sum_probs=221.6
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcCcchhccCC-cceEEEeccccCC----cccCccccceE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTN-LRLLKIHNLQLPA----GLESLSDELRL 407 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~----~~~~l~~~l~~ 407 (720)
+.|++|||.|.... +..+.++..|.....-.|.+...+.|+.... ++.|++.+|.++. .+..++ .++.
T Consensus 81 ~~LdlsnNkl~~id------~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHID------FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRS 153 (873)
T ss_pred eeeeccccccccCc------HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhh
Confidence 56999999998775 4556678888888888888888888877665 9999999998854 233333 4899
Q ss_pred EEecCCCCCCCCCC-CC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 408 LQWHGYPLKSLPSS-ME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 408 L~~~~~~~~~lp~~-~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
++++.|.+.++|.. |. ..++.+|+++.|.|..+..+. |.++.+|.+|.|+.|. ++.+|...
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--------F~~lnsL~tlkLsrNr-------ittLp~r~-- 216 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--------FDSLNSLLTLKLSRNR-------ITTLPQRS-- 216 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccccccccccc--------ccccchheeeecccCc-------ccccCHHH--
Confidence 99999999988753 43 378999999999998876553 7788888888888887 56666543
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCE------------------------EeccCCCCCcccCcCc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRT------------------------VNLSRCSKLENMPESL 540 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~------------------------L~L~~~~~l~~lp~~~ 540 (720)
|.+|++|+.|+|..|.+ ... -..|.+|++|+. |+|..|+....--.++
T Consensus 217 ------Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 217 ------FKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ------hhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 55566666666666652 222 223444444444 4444443333222334
Q ss_pred CCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 541 GQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 541 ~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
.+|++|+.|++++|.|..+....+..+++|+.|++++|+++.+.+.+|..+..|+.|.++.|......-..|.++.+|
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL-- 367 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL-- 367 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh--
Confidence 455555555555555555544444444555555555555555555555555555555555554443333334444444
Q ss_pred ccccEEECCCCCCcc-c---cccccCCCCCceeeccccccccccCC-----cccccceEeeecCcccccchhhccCchhH
Q 047161 621 LNLKKLNLRRNNFVS-L---RGTINHLPKFKHLKLDDCKRLRSLSE-----LPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~-l---p~~i~~l~~L~~L~L~~c~~L~~lp~-----lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
+.|||++|.+.- + ...+..|++|+.|.+.+| +++++|. + +.|+.|++.++.--..=|+.|..+ .|
T Consensus 368 ---~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl-~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 368 ---HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGL-EALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred ---hhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccC-cccceecCCCCcceeecccccccc-hh
Confidence 677788887652 2 234577999999999998 5888874 3 569999999877555557788887 78
Q ss_pred hhhhhh-----cccc-hhHHHHHhh
Q 047161 692 TSRIFC-----INCP-KLILNWLQQ 710 (720)
Q Consensus 692 ~~l~~~-----~nc~-~l~~~w~~~ 710 (720)
++|.+. ++|. +.+..|+..
T Consensus 442 k~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 442 KELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred hhhhhcccceEEeccHHHHHHHHHh
Confidence 776543 2354 456777753
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-23 Score=214.43 Aligned_cols=310 Identities=22% Similarity=0.281 Sum_probs=182.6
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC---cchhccCCcceEEEeccccC---CcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN---TAFLKMTNLRLLKIHNLQLP---AGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~---~~~~~l~~~l 405 (720)
++.|.++.|.|...+ ..+..|.+|.....-.|.+.+. +.+..|..|..|+++.|++. ..+.+ .+..
T Consensus 57 LEHLs~~HN~L~~vh-------GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~-AKn~ 128 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVH-------GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEY-AKNS 128 (1255)
T ss_pred hhhhhhhhhhhHhhh-------hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhh-hcCc
Confidence 566677777775442 3344556666555555555443 24556777777777777663 33333 2446
Q ss_pred eEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 406 RLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
-.|++++|.+.+||... ....+..|++++|++..+ +|...++.+|++|+|++|+-. .-.|+.+|.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L---------PPQ~RRL~~LqtL~Ls~NPL~--hfQLrQLPs-- 195 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML---------PPQIRRLSMLQTLKLSNNPLN--HFQLRQLPS-- 195 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhc---------CHHHHHHhhhhhhhcCCChhh--HHHHhcCcc--
Confidence 66777777777777643 455666777777777665 455677788888888888611 001122222
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCC-CcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKI-LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~-~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+++|++|.+++++. ...+|.++..|.+|..+|+|.| .+..+|+.+.++++|+.|+|++|.++++...
T Consensus 196 -----------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~ 263 (1255)
T KOG0444|consen 196 -----------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMT 263 (1255)
T ss_pred -----------chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeecc
Confidence 45555666655432 2345666666666666666665 3555666666666666666666666665544
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-CCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-LSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
...- .+|++|+++.|++..+ |...+.+..|..+...+|.+.-..+|+ ++.+..| +.+..++|.+.-+|..+.
T Consensus 264 ~~~W-~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-----evf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 264 EGEW-ENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-----EVFHAANNKLELVPEGLC 336 (1255)
T ss_pred HHHH-hhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-----HHHHhhccccccCchhhh
Confidence 4333 5666666666665543 345566666666666666655555555 6666655 444555666665666666
Q ss_pred CCCCCceeeccccccccccCC---cccccceEeeecCcccccch
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE---LPSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~l~~c~~L~~lp 682 (720)
.++.|+.|.|++| .|.++|+ +-+.|+.|+++.+++|..-|
T Consensus 337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6666666666555 3445553 22446666666666665554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-21 Score=200.16 Aligned_cols=304 Identities=18% Similarity=0.221 Sum_probs=224.5
Q ss_pred hhhhHHHHhcCc--chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchh
Q 047161 365 VADVSHVLRRNT--AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIE 438 (720)
Q Consensus 365 ~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~ 438 (720)
++...|.+.... .|.++.+|+.+++..|.+.. .+......+..|++.+|.+.++.+.- ....++.++++.|.+.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 444555555443 67899999999999997632 23444566889999999988876432 3456788899998887
Q ss_pred HHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCC
Q 047161 439 QFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STIN 517 (720)
Q Consensus 439 ~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~ 517 (720)
.+. .|.|..-.++++|+|++|. ++.+.... |..+.+|..|.|++|++ ..+| .+|.
T Consensus 163 ~i~--------~~sfp~~~ni~~L~La~N~-------It~l~~~~--------F~~lnsL~tlkLsrNri-ttLp~r~Fk 218 (873)
T KOG4194|consen 163 EIP--------KPSFPAKVNIKKLNLASNR-------ITTLETGH--------FDSLNSLLTLKLSRNRI-TTLPQRSFK 218 (873)
T ss_pred ccc--------CCCCCCCCCceEEeecccc-------cccccccc--------ccccchheeeecccCcc-cccCHHHhh
Confidence 763 3568888899999999998 56665443 77888999999999995 5555 4566
Q ss_pred CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccccccccc
Q 047161 518 GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLM 597 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l 597 (720)
+|+.|+.|+|..|.+-..---.|..|++|+.|.+..|.+..+..+.|..+.++++|++..|++..+....+.++..|+.|
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 69999999999986432213457889999999999999998888888888999999999999988888888999999999
Q ss_pred ccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cccc------------------------CCCCCceeecc
Q 047161 598 QKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTIN------------------------HLPKFKHLKLD 652 (720)
Q Consensus 598 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~------------------------~l~~L~~L~L~ 652 (720)
+++.|.+....+.+++-+++| +.|+|++|+++.++ ..+. .+++|+.|+|+
T Consensus 299 ~lS~NaI~rih~d~WsftqkL-----~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKL-----KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred ccchhhhheeecchhhhcccc-----eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 999888888888888888877 44555555555554 3334 44455555555
Q ss_pred ccccccccC-------CcccccceEeeecCcccccch-hhccCchhHhhhhhhcc
Q 047161 653 DCKRLRSLS-------ELPSDIKKVRVHGCTSLATIS-DALRSCNSATSRIFCIN 699 (720)
Q Consensus 653 ~c~~L~~lp-------~lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~~~n 699 (720)
+|.---.+. .+ ++|+.|.+.| .+++++| ..|.+++.|+.|++-.|
T Consensus 374 ~N~ls~~IEDaa~~f~gl-~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGL-PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CCeEEEEEecchhhhccc-hhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 543111111 12 5688888887 5588888 57888888888877655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-21 Score=200.74 Aligned_cols=239 Identities=20% Similarity=0.308 Sum_probs=165.2
Q ss_pred ceEEEeccccC-----CcccCccccceEEEecCCCCCCCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 385 RLLKIHNLQLP-----AGLESLSDELRLLQWHGYPLKSLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 385 ~~L~l~~~~l~-----~~~~~l~~~l~~L~~~~~~~~~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
+-.++++|.+. .....+ ..+++|.+....+..+|.... ..++.+|.+.+|++..+.. .++.++.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG---------ELs~Lp~ 79 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG---------ELSDLPR 79 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh---------hhccchh
Confidence 44455555443 333333 347778888777888887654 4566777777777766543 2567777
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
||.+++..|. +.+ .-+|.. |.++.-|..||||+|+ +.+.|..+..-+++-+|+||+|+ +..+|.
T Consensus 80 LRsv~~R~N~-LKn----sGiP~d---------iF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn 143 (1255)
T KOG0444|consen 80 LRSVIVRDNN-LKN----SGIPTD---------IFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPN 143 (1255)
T ss_pred hHHHhhhccc-ccc----CCCCch---------hcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCc
Confidence 8888887776 110 235655 7778888888888887 67788888888888888888874 566775
Q ss_pred C-cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCC
Q 047161 539 S-LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLC 616 (720)
Q Consensus 539 ~-~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~ 616 (720)
. +-+|+.|-.|||++|++..+||++-.+ ..|++|.+++|.+....-..+..+.+|+.+.+++.+..-..+| ++.++.
T Consensus 144 ~lfinLtDLLfLDLS~NrLe~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNRLEMLPPQIRRL-SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred hHHHhhHhHhhhccccchhhhcCHHHHHH-hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 4 557888888888888888888887776 7888888888877776666667777777777776655444444 366666
Q ss_pred CCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 617 SLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+| ..+|+|.|++..+|.++-++++|+.|+|++|+
T Consensus 223 NL-----~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 223 NL-----RDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hh-----hhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 55 56666777776677776667777777777664
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-20 Score=187.15 Aligned_cols=325 Identities=22% Similarity=0.294 Sum_probs=207.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC-cchhccCCcceEEEeccccC---CcccCccccceE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN-TAFLKMTNLRLLKIHNLQLP---AGLESLSDELRL 407 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~---~~~~~l~~~l~~ 407 (720)
+..++.|||.+... |.+++.+..+-..++..|.+... ..+..+.++..+++.+|.+. +..-. .+.+++
T Consensus 116 l~~l~~s~n~~~el-------~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ 187 (565)
T KOG0472|consen 116 LVKLDCSSNELKEL-------PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH 187 (565)
T ss_pred hhhhhccccceeec-------CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh
Confidence 45667777777654 66666666666666666555543 25566666666777666552 22222 345677
Q ss_pred EEecCCCCCCCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 408 LQWHGYPLKSLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
++...|.++.+|..++ ..++..|++..|++.. .|.|.+|..|..|+++.|. ++.+|.+.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~----------lPef~gcs~L~Elh~g~N~-------i~~lpae~--- 247 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRF----------LPEFPGCSLLKELHVGENQ-------IEMLPAEH--- 247 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhccccc----------CCCCCccHHHHHHHhcccH-------HHhhHHHH---
Confidence 7777777777777664 3445555566665543 4677788888888877776 56666653
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
..++++|.+|||++|+ ++++|..++.+.+|.+||+|+|. +..+|.++|+| .|+.|-+.+|.+..+-.++...
T Consensus 248 -----~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 248 -----LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred -----hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 4489999999999998 78999999999999999999985 66789999999 8999999999877654443322
Q ss_pred cC--CceEEEe--ecCCCCC----------CCCCc---ccccccccccccCCCCcccc----------------------
Q 047161 567 SR--ILKVYLF--VDTRDHR----------TSSSS---WHLWFPFSLMQKGSSDSMAL---------------------- 607 (720)
Q Consensus 567 ~~--~L~~L~l--~~~~~~~----------~~~~~---~~~l~~l~~l~l~~~~~~~~---------------------- 607 (720)
.+ -|++|.- .+-+.+. .++.. ...+...+.+..+..+....
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 11 1222110 0000000 01111 12233333333332222110
Q ss_pred ---------------------------cCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccccccc
Q 047161 608 ---------------------------MLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660 (720)
Q Consensus 608 ---------------------------~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 660 (720)
....++.++ +|..|+|++|-+..+|..++.+..|+.|+|+.|+ ...+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~-----kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~l 473 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ-----KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRML 473 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh-----cceeeecccchhhhcchhhhhhhhhheecccccc-cccc
Confidence 000122222 3478899999999999999999999999999884 3333
Q ss_pred CC--------------------cc-------cccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 661 SE--------------------LP-------SDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 661 p~--------------------lp-------~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
|. ++ .+|..|++.+ ..+..+|..+++|++|+.|.+..|
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 31 22 3577777766 558889999999999998777655
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-19 Score=178.01 Aligned_cols=166 Identities=25% Similarity=0.273 Sum_probs=131.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcCc-chhccCCcceEEEecccc---CCcccCccccceE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNT-AFLKMTNLRLLKIHNLQL---PAGLESLSDELRL 407 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l---~~~~~~l~~~l~~ 407 (720)
+..++...|++... |.++..+.++-.+....+.+.... ..-.|+.|+.++...|.+ |+.+..+. .+..
T Consensus 139 l~dl~~~~N~i~sl-------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~-~L~~ 210 (565)
T KOG0472|consen 139 LEDLDATNNQISSL-------PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE-SLEL 210 (565)
T ss_pred hhhhhccccccccC-------chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh-hhHH
Confidence 45556666666655 788888888877777766666543 334499999999988865 66666553 4778
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhh
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~ 487 (720)
|++..|.+..+|+.-+...+.+++...|+++.+.... ...+++|.+|||..|+ ++++|++
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~--------~~~L~~l~vLDLRdNk-------lke~Pde----- 270 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH--------LKHLNSLLVLDLRDNK-------LKEVPDE----- 270 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH--------hcccccceeeeccccc-------cccCchH-----
Confidence 8999999999996667788888999988888775543 5688899999999998 7899998
Q ss_pred HHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 488 l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
++.+.+|.+||+|+|. +..+|.++|++ +|+.|-+-||.
T Consensus 271 ----~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ----ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 8889999999999998 67899999999 88888887774
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-17 Score=194.78 Aligned_cols=269 Identities=24% Similarity=0.370 Sum_probs=142.9
Q ss_pred ccceEEEecCCCC-------CCCCCCCC--CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----
Q 047161 403 DELRLLQWHGYPL-------KSLPSSME--MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR---- 469 (720)
Q Consensus 403 ~~l~~L~~~~~~~-------~~lp~~~~--~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~---- 469 (720)
..+++|.+..+.. ..+|..+. +.+++.|.+.++.++.+... ..+.+|+.|++++|.-
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~----------f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN----------FRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc----------CCccCCcEEECcCccccccc
Confidence 4577777755432 13555443 34677777776665554322 2344555555555430
Q ss_pred --CCCCCC-----------CcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 470 --LQNCTS-----------LTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 470 --l~~~~~-----------L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
...+++ +..+|. ++.+++|+.|+|++|..+..+|.+++++++|++|++++|..++.+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~----------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD----------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc----------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 000111 133332 455666666666666666666666666666666666666666666
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc------------------------
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF------------------------ 592 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~------------------------ 592 (720)
|..+ ++++|+.|++++|...+..|.. .++|+.|++.+|.+..++... .+.
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccch
Confidence 6544 5666666666666543333322 255666666666554443221 112
Q ss_pred -------cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCC-CCccccccccCCCCCceeeccccccccccCCcc
Q 047161 593 -------PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRN-NFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP 664 (720)
Q Consensus 593 -------~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp 664 (720)
.|+.+.+..+......+.+++++++| +.|++++| .+..+|..+ ++++|+.|++++|..+..+|.++
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-----~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-----EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCC-----CEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 22223332222222222224444444 55666654 455666554 56677777777776666555433
Q ss_pred -----------------------cccceEeeecCcccccchhhccCchhHhhhhhhcccchhH
Q 047161 665 -----------------------SDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLI 704 (720)
Q Consensus 665 -----------------------~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~l~ 704 (720)
++|+.|++.+|++|+.+|..+..+++|+.+.+ .+|+.+.
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l-~~C~~L~ 907 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF-SDCGALT 907 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec-CCCcccc
Confidence 24555556666666666665556666665333 3676653
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-18 Score=188.84 Aligned_cols=208 Identities=22% Similarity=0.272 Sum_probs=134.4
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
.+|++++.+.+|+.|+..+|. +..+|..+...++|+.|.+..| .+..+|...+.+++|++|+|..|.+..+|+..+.-
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 345557777777777777776 4677777777777777777776 46667777777888888888888887777755543
Q ss_pred cC-CceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccc-------------------cEE
Q 047161 567 SR-ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNL-------------------KKL 626 (720)
Q Consensus 567 ~~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L-------------------~~L 626 (720)
+. +|+.|..+.|.+...+...-..+..++.+.+.+|.+.+..+|.+.+..+|+.|+| ++|
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 22 2566666666665555444445566778888888888888888888888866643 556
Q ss_pred ECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccc--hhhccCchhHhhhhhhcc
Q 047161 627 NLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATI--SDALRSCNSATSRIFCIN 699 (720)
Q Consensus 627 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~l--p~~~~~~~~L~~l~~~~n 699 (720)
+||||.++.+|..+.+++.|++|...+| .+..+|++. +.|+.++++ |..|+.+ |.... .++|+.|++..|
T Consensus 413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 413 NLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred hcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCC
Confidence 6666666666666666666666655555 355555433 456666664 3444333 22222 256666666655
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=172.44 Aligned_cols=173 Identities=21% Similarity=0.170 Sum_probs=88.2
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
+|+.|++++|. +..+|.. +++|++|++++|.+ ..+|... .+|+.|++++|.+.++|. ...+|+.|+++
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPT----LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCccccccc----cccccceEecC
Confidence 34455555554 3344432 24455555555432 2333321 234445555555554432 11345555555
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 656 (720)
+|.+..++.. + ..+..+.+..|.+.. +|.+ .. +|+.|++++|.++.+|.. .++|+.|++++| .
T Consensus 351 ~N~Ls~LP~l-p---~~L~~L~Ls~N~L~~--LP~l--~~-----~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~ 413 (788)
T PRK15387 351 DNQLASLPTL-P---SELYKLWAYNNRLTS--LPAL--PS-----GLKELIVSGNRLTSLPVL---PSELKELMVSGN-R 413 (788)
T ss_pred CCccCCCCCC-C---cccceehhhcccccc--Cccc--cc-----ccceEEecCCcccCCCCc---ccCCCEEEccCC-c
Confidence 5555443321 1 122333333332221 1211 11 236677777777776643 246777777777 3
Q ss_pred ccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 657 LRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 657 L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
+..+|.+|.+|+.|+++++. ++++|..+.++++|..+++.+|
T Consensus 414 LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 414 LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCC
Confidence 66677766677777776643 6677777777777777666655
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-16 Score=174.24 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=137.7
Q ss_pred CcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 383 NLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 383 ~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
+...|+++++.+......++..++.|++++|.+..+|..+. .++..|++++|++..+... + .++|+.|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~---------l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPAT---------L--PDTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChh---------h--hccccEE
Confidence 34567777766654334456778889999999998887654 4777888887776544221 1 2368888
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ 542 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 542 (720)
+|++|. +..+|.. +. .+|++|++++|. +..+|..+. ++|++|++++|. +..+|..+.
T Consensus 247 ~Ls~N~-------L~~LP~~---------l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp- 303 (754)
T PRK15370 247 ELSINR-------ITELPER---------LP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP- 303 (754)
T ss_pred ECcCCc-------cCcCChh---------Hh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch-
Confidence 888876 4566654 22 468888888777 456777664 578888888875 445665543
Q ss_pred CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-CCCCCCCCcc
Q 047161 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-LSGLCSLTEL 621 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l~~l~~L~~L 621 (720)
++|+.|++++|.+..+|.... ++|+.|++.+|.+..++.... ..|..+++..|++.. +|. +. +
T Consensus 304 -~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~L~~--LP~~lp--~----- 367 (754)
T PRK15370 304 -SGITHLNVQSNSLTALPETLP---PGLKTLEAGENALTSLPASLP---PELQVLDVSKNQITV--LPETLP--P----- 367 (754)
T ss_pred -hhHHHHHhcCCccccCCcccc---ccceeccccCCccccCChhhc---CcccEEECCCCCCCc--CChhhc--C-----
Confidence 467888888888877665433 678888887777665443221 344445555444321 111 10 1
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccC
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS 661 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 661 (720)
+|+.|+|++|.++.+|..+. .+|+.|++++| .+..+|
T Consensus 368 ~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 368 TITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLP 404 (754)
T ss_pred CcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCc
Confidence 23555555665555554443 24555555555 344444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-17 Score=145.58 Aligned_cols=180 Identities=27% Similarity=0.483 Sum_probs=141.7
Q ss_pred ccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEe
Q 047161 447 LIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVN 526 (720)
Q Consensus 447 l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~ 526 (720)
+..+|.+-.+.++..|.|++|+ +..+|++ |..+.+|+.|++++|. +..+|.+|+.++.|+.|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNK-------l~~vppn---------ia~l~nlevln~~nnq-ie~lp~~issl~klr~ln 85 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNK-------LTVVPPN---------IAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILN 85 (264)
T ss_pred HhhcccccchhhhhhhhcccCc-------eeecCCc---------HHHhhhhhhhhcccch-hhhcChhhhhchhhhhee
Confidence 3345667778888999999988 7888888 8899999999999988 788999999999999999
Q ss_pred ccCCCCCcccCcCcCCCCCCCEEeccCccccc-CCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 527 LSRCSKLENMPESLGQMESLEELDVSGTVIRQ-PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 527 L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
++-| .+..+|..||.++.|+.||+.+|++.+ ..|+.+.-++.|+.|.+++|.+
T Consensus 86 vgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf------------------------- 139 (264)
T KOG0617|consen 86 VGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF------------------------- 139 (264)
T ss_pred cchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-------------------------
Confidence 9887 467889999999999999999998765 3333333337777777654433
Q ss_pred cccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCccc
Q 047161 606 ALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSL 678 (720)
Q Consensus 606 ~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L 678 (720)
...++.++.+++| +.|.+.+|.+-++|..++.++.|+.|.+.+|+ +.-+||.|-.|++.+....
T Consensus 140 e~lp~dvg~lt~l-----qil~lrdndll~lpkeig~lt~lrelhiqgnr----l~vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 140 EILPPDVGKLTNL-----QILSLRDNDLLSLPKEIGDLTRLRELHIQGNR----LTVLPPELANLDLVGNKQV 203 (264)
T ss_pred ccCChhhhhhcce-----eEEeeccCchhhCcHHHHHHHHHHHHhcccce----eeecChhhhhhhhhhhHHH
Confidence 2334557777776 67778889999999999999999999999996 5666777777777765544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=164.41 Aligned_cols=243 Identities=17% Similarity=0.253 Sum_probs=178.3
Q ss_pred ccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCcc
Q 047161 403 DELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPRE 482 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~ 482 (720)
+....|+++++.++++|..+. ..+..|++++|++..++.. + +++|++|++++|. ++.+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~---------l--~~nL~~L~Ls~N~-------LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPEN---------L--QGNIKTLYANSNQ-------LTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChh---------h--ccCCCEEECCCCc-------cccCChh
Confidence 446778999999999998663 5788999999988765432 1 3589999999987 5677765
Q ss_pred chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcc
Q 047161 483 IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 483 ~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+ ..+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|+.|++++|.+..+|..
T Consensus 239 ---------l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 239 ---------L--PDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred ---------h--hccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCccc
Confidence 2 2479999999998 568888764 589999999885 457887664 5899999999999988764
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccC
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINH 642 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~ 642 (720)
.. ++|+.|++++|.+..++...+ .+|..+.+..+.+... +..+. + +|+.|++++|+++.+|..+.
T Consensus 302 lp---~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l~--~-----sL~~L~Ls~N~L~~LP~~lp- 366 (754)
T PRK15370 302 LP---SGITHLNVQSNSLTALPETLP---PGLKTLEAGENALTSL-PASLP--P-----ELQVLDVSKNQITVLPETLP- 366 (754)
T ss_pred ch---hhHHHHHhcCCccccCCcccc---ccceeccccCCccccC-Chhhc--C-----cccEEECCCCCCCcCChhhc-
Confidence 43 678899999998887654433 4566666766654431 11121 2 34788999999998887664
Q ss_pred CCCCceeeccccccccccC-CcccccceEeeecCcccccchhhccC----chhHhhhhhhcc
Q 047161 643 LPKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRS----CNSATSRIFCIN 699 (720)
Q Consensus 643 l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~----~~~L~~l~~~~n 699 (720)
++|+.|+|++| .+..+| .+|.+|+.|++++| .+..+|..+.+ ++.+..+++.+|
T Consensus 367 -~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 367 -PTITTLDVSRN-ALTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred -CCcCEEECCCC-cCCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 68999999998 466776 35677999999885 46777765544 355566555554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=160.42 Aligned_cols=237 Identities=22% Similarity=0.216 Sum_probs=166.9
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhh
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~ 487 (720)
|+++.+.++++|..+. .++..|.+..|++..+ |. .+++|++|+|++|. |+.+|..
T Consensus 206 LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~L----------P~--lp~~Lk~LdLs~N~-------LtsLP~l----- 260 (788)
T PRK15387 206 LNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL----------PA--LPPELRTLEVSGNQ-------LTSLPVL----- 260 (788)
T ss_pred EEcCCCCCCcCCcchh-cCCCEEEccCCcCCCC----------CC--CCCCCcEEEecCCc-------cCcccCc-----
Confidence 3444444444444432 2444455555444332 21 24689999999987 5677653
Q ss_pred HHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCc
Q 047161 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567 (720)
Q Consensus 488 l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~ 567 (720)
.++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.+.++|.. .
T Consensus 261 -------p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p 321 (788)
T PRK15387 261 -------PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL----P 321 (788)
T ss_pred -------ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCC----c
Confidence 4678999999998 5677763 3678899999985 5567763 47899999999999987652 2
Q ss_pred CCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCc
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFK 647 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~ 647 (720)
.+|+.|.+.+|.+..++.. ...|+.|+++.|.+.. +|.+ .. +|+.|++++|.+..+|.. .++|+
T Consensus 322 ~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~--LP~l--p~-----~L~~L~Ls~N~L~~LP~l---~~~L~ 385 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLAS--LPTL--PS-----ELYKLWAYNNRLTSLPAL---PSGLK 385 (788)
T ss_pred ccccccccccCcccccccc----ccccceEecCCCccCC--CCCC--Cc-----ccceehhhccccccCccc---ccccc
Confidence 5788899999988876531 2467788888776553 2221 12 346788999999998854 35799
Q ss_pred eeeccccccccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcccchhHHHHHh
Q 047161 648 HLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 648 ~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
.|++++| .+..+|.+|++|+.|+++++. +..+|... .+|+.|++.+|.-.-+|..+.
T Consensus 386 ~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~ 442 (788)
T PRK15387 386 ELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLP---SGLLSLSVYRNQLTRLPESLI 442 (788)
T ss_pred eEEecCC-cccCCCCcccCCCEEEccCCc-CCCCCcch---hhhhhhhhccCcccccChHHh
Confidence 9999998 588899999999999999975 78888643 467777888776665655444
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-16 Score=171.53 Aligned_cols=265 Identities=23% Similarity=0.291 Sum_probs=164.5
Q ss_pred hccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 379 LKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
..+.+|+.+....|++.. +...-..++.+..+.|++..+-..+.+.++..++++++++..+.. .++.+.+
T Consensus 196 s~~~~l~~l~c~rn~ls~-l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~---------wi~~~~n 265 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSE-LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE---------WIGACAN 265 (1081)
T ss_pred hhccchhhhhhhhcccce-EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH---------HHHhccc
Confidence 344445555555554432 222223356666666666655445555666666666665555431 1455666
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
|+.++..+|. |..+|.. +...++|++|...+|. +..+|.....+++|++|+|..|. +..+|+
T Consensus 266 le~l~~n~N~-------l~~lp~r---------i~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~ 327 (1081)
T KOG0618|consen 266 LEALNANHNR-------LVALPLR---------ISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPD 327 (1081)
T ss_pred ceEecccchh-------HHhhHHH---------HhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccch
Confidence 6666666655 3444443 4444455555555554 34444444445555555555442 333332
Q ss_pred C--------------------------cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 539 S--------------------------LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 539 ~--------------------------~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
. =..+..|+.|++.+|.++...-..+....+|+.|++++|+++.++...+..+.
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 1 11345677788888888764433333348999999999999999999999999
Q ss_pred cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccccccc--C-Ccc-cccc
Q 047161 593 PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL--S-ELP-SDIK 668 (720)
Q Consensus 593 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l--p-~lp-~~L~ 668 (720)
.|+.+.+++|.+.... ..+..+..| +.|...+|.+..+| .+..++.|+.+|++.|. |+.+ | .+| ++|+
T Consensus 408 ~LeeL~LSGNkL~~Lp-~tva~~~~L-----~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLP-DTVANLGRL-----HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLK 479 (1081)
T ss_pred HhHHHhcccchhhhhh-HHHHhhhhh-----HHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccc
Confidence 9999999988765543 335666666 56667788888889 78888999999998774 4433 2 466 8899
Q ss_pred eEeeecCcccc
Q 047161 669 KVRVHGCTSLA 679 (720)
Q Consensus 669 ~L~l~~c~~L~ 679 (720)
+|+++|+..+.
T Consensus 480 yLdlSGN~~l~ 490 (1081)
T KOG0618|consen 480 YLDLSGNTRLV 490 (1081)
T ss_pred eeeccCCcccc
Confidence 99999887643
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-16 Score=137.78 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=137.5
Q ss_pred CCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCC
Q 047161 417 SLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLT 496 (720)
Q Consensus 417 ~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~ 496 (720)
.+|.-|......+|.+++|++... +|.+..+.+|++|++++|+ ++++|.+ ++.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nnq-------ie~lp~~---------issl~ 79 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNNQ-------IEELPTS---------ISSLP 79 (264)
T ss_pred hcccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccch-------hhhcChh---------hhhch
Confidence 455555556666666666665443 4668899999999999998 7899998 89999
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc-ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEe
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 575 (720)
+|+.|++.-|+ +..+|..||.++.|+.|||++|.... .+|..|..|+.|+.|++++|.+.-+|+.++.+ ++|+.|.+
T Consensus 80 klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l-t~lqil~l 157 (264)
T KOG0617|consen 80 KLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL-TNLQILSL 157 (264)
T ss_pred hhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh-cceeEEee
Confidence 99999999988 67899999999999999999987653 68999999999999999999999999999888 99999998
Q ss_pred ecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCC
Q 047161 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHL 643 (720)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l 643 (720)
.+|.+..+ +.+++.++.| ++|++.+|.++-+|..++++
T Consensus 158 rdndll~l-------------------------pkeig~lt~l-----relhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 158 RDNDLLSL-------------------------PKEIGDLTRL-----RELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ccCchhhC-------------------------cHHHHHHHHH-----HHHhcccceeeecChhhhhh
Confidence 66644332 1225556655 67788999999999776554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-13 Score=135.91 Aligned_cols=276 Identities=19% Similarity=0.219 Sum_probs=184.5
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
..+-++-.++++|..+. ...+++.+..|+|+.+..+. |+.+++||.|||++|. |..|.+..
T Consensus 50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~a--------F~~l~~LRrLdLS~N~-------Is~I~p~A--- 110 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGA--------FKTLHRLRRLDLSKNN-------ISFIAPDA--- 110 (498)
T ss_pred eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhh--------ccchhhhceecccccc-------hhhcChHh---
Confidence 34555666778887763 45567788888887775543 8899999999999887 56664433
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
|..+.+|..|-+.+++.+..+|. .|++|.+|+.|.+.-|.......+.+..|++|..|.+.+|.+..+....+.
T Consensus 111 -----F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~ 185 (498)
T KOG4237|consen 111 -----FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ 185 (498)
T ss_pred -----hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc
Confidence 66777777776666334677775 567888888888888766655567788889999999999888888776776
Q ss_pred CcCCceEEEeecCCCC------------CCCCCccccccc----------------------cccc--ccCCCCcccccC
Q 047161 566 PSRILKVYLFVDTRDH------------RTSSSSWHLWFP----------------------FSLM--QKGSSDSMALML 609 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~------------~~~~~~~~~l~~----------------------l~~l--~l~~~~~~~~~~ 609 (720)
.+.+++++++..|.+- ...+..+++..- ++.+ .+......+...
T Consensus 186 ~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c 265 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC 265 (498)
T ss_pred chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence 6688888887665521 111111111110 0000 000111111122
Q ss_pred CC--CCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc----ccccceEeeecCcccccch
Q 047161 610 PS--LSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 610 ~~--l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~~L~~lp 682 (720)
|. |..+++| +.|+|++|.++.+ +.++..+..++.|.|..|+ ++.+..- -..|+.|++.+..--.-.|
T Consensus 266 P~~cf~~L~~L-----~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 266 PAKCFKKLPNL-----RKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hHHHHhhcccc-----eEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 22 6666665 7889999999987 5889999999999999984 5555431 1569999999976555566
Q ss_pred hhccCchhHhhhhhhcc---cch---hHHHHHhhcc
Q 047161 683 DALRSCNSATSRIFCIN---CPK---LILNWLQQYS 712 (720)
Q Consensus 683 ~~~~~~~~L~~l~~~~n---c~~---l~~~w~~~~~ 712 (720)
..|..+.+|..+.+..| |.. .+..|+++..
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 77877888877666544 543 3578998754
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-12 Score=129.45 Aligned_cols=245 Identities=17% Similarity=0.188 Sum_probs=173.9
Q ss_pred ccccCCcccCccccceEEEecCCCCCCCCCC-C-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCC
Q 047161 391 NLQLPAGLESLSDELRLLQWHGYPLKSLPSS-M-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK 468 (720)
Q Consensus 391 ~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~-~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~ 468 (720)
+-.+.+....+|.....+.++.|.+++||+. | ...+++++++++|+|..+..+ .|.++++|-.|-+.++.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~--------AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD--------AFKGLASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH--------hhhhhHhhhHHHhhcCC
Confidence 3344455567788899999999999999964 4 468999999999999877433 48888888888888854
Q ss_pred CCCCCCCCcccCccchhh----------------hHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCC
Q 047161 469 RLQNCTSLTTLPREIATE----------------SLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCS 531 (720)
Q Consensus 469 ~l~~~~~L~~lp~~~~~~----------------~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~ 531 (720)
.+ +++|...+.+ .....+..+++|..|.+.+|. +..++. ++..+.+++++.+..|.
T Consensus 127 kI------~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 KI------TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ch------hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 44 6666543321 123347788888888888887 566666 78888888888887765
Q ss_pred CC------------cccCcCcCCCCCCCEE-------------------------eccCcccc-cCCccccCCcCCceEE
Q 047161 532 KL------------ENMPESLGQMESLEEL-------------------------DVSGTVIR-QPVPSIFFPSRILKVY 573 (720)
Q Consensus 532 ~l------------~~lp~~~~~L~~L~~L-------------------------~L~~n~l~-~~~~~~~~~~~~L~~L 573 (720)
+. ...|..++......-. ..+.+... ..|..-+..+++|++|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 22 1122222221111111 11112111 2222334456899999
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeecc
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD 652 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~ 652 (720)
++++|.++.+.+..|.+...++.+.+..|.+.......|.++..| +.|+|.+|+++.+ |..+..+.+|.+|.|-
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-----~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-----KTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-----eeeeecCCeeEEEecccccccceeeeeehc
Confidence 999999999999999999999999999888776666668888877 6788999999965 6788889999999998
Q ss_pred ccc
Q 047161 653 DCK 655 (720)
Q Consensus 653 ~c~ 655 (720)
.|+
T Consensus 355 ~Np 357 (498)
T KOG4237|consen 355 SNP 357 (498)
T ss_pred cCc
Confidence 766
|
|
| >PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-12 Score=115.52 Aligned_cols=89 Identities=31% Similarity=0.493 Sum_probs=75.3
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc---------------------Ccccc-c
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI---------------------PTVVR-K 58 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i---------------------p~~vr-~ 58 (720)
|+++|.|+.++..|..+.+++.+||++|+++|||||++|++|.||+.|+..+ +++|+ .
T Consensus 28 g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~ 107 (141)
T PF01582_consen 28 GYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPD 107 (141)
T ss_dssp TS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTH
T ss_pred CeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChh
Confidence 7899999988999999999999999999999999999999999999999988 77787 6
Q ss_pred ccchHHHHHHHHHHHhhhC--hHHHHHHHHHHH
Q 047161 59 QTRSFHEAFAKHEEAFRES--TEKVQNWRHALT 89 (720)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~--~~~v~~w~~~l~ 89 (720)
+.+.+..++..+......+ ..+...|++++.
T Consensus 108 ~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 108 QSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 7777887776665544332 467889998875
|
In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A .... |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-12 Score=132.53 Aligned_cols=171 Identities=25% Similarity=0.326 Sum_probs=132.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..|-.|+.|.|..|. ++.+|.. ++++..|.+|||+.|. +..+|..++.|+ |+.|.+++| .
T Consensus 94 ~~~f~~Le~liLy~n~-------~r~ip~~---------i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC-------IRTIPEA---------ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-K 154 (722)
T ss_pred HHHHHHHHHHHHHhcc-------ceecchh---------hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-c
Confidence 4455567777787766 5777776 8889999999999998 678899998887 899999886 5
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
++.+|+.++.+..|.+||.+.|.+..+|+..+++ .+|+.|.+..|.+..++ +.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l-~slr~l~vrRn~l~~lp-------------------------~El 208 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL-TSLRDLNVRRNHLEDLP-------------------------EEL 208 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhH-HHHHHHHHhhhhhhhCC-------------------------HHH
Confidence 7889999998899999999999999999988887 88888777555433321 112
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC------cccccceEeeecC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE------LPSDIKKVRVHGC 675 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~~L~~L~l~~c 675 (720)
-.|.|..||+|+|++..+|-.|.+|..|++|.|.+|+ |++-|. .---.++|++.-|
T Consensus 209 ------~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 ------CSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------hCCceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 2335688999999999999999999999999999997 443331 1122678888877
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-11 Score=136.78 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=158.8
Q ss_pred CCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhcc
Q 047161 415 LKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL 494 (720)
Q Consensus 415 ~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~ 494 (720)
....|........++..+.++++.... .-..++.|++|-+.+|.. .+..++..+ |..
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~----------~~~~~~~L~tLll~~n~~-----~l~~is~~f--------f~~ 569 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIA----------GSSENPKLRTLLLQRNSD-----WLLEISGEF--------FRS 569 (889)
T ss_pred ccccccccchhheeEEEEeccchhhcc----------CCCCCCccceEEEeecch-----hhhhcCHHH--------Hhh
Confidence 334565555667777777777665542 334566789998888763 124555554 778
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 574 (720)
++.|++|||++|...+.+|.+|++|-+||+|+++++ .+..+|..+++|+.|.+|++..+.....++.+...+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 999999999999989999999999999999999996 5779999999999999999999987777777777569999999
Q ss_pred eecCC--CCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecc
Q 047161 575 FVDTR--DHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLD 652 (720)
Q Consensus 575 l~~~~--~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 652 (720)
+.... .....-.....+.+|+.+....... .....+..++.|..+. ..+.+.++.....+..+..+.+|+.|.+.
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~-~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLL-QSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHh-HhhhhcccccceeecccccccCcceEEEE
Confidence 85443 1111111222233333322211111 0111122223332211 23333445555667777888899999999
Q ss_pred ccccccccCCc---------ccccceEeeecCcccccchhhccCchhHhh
Q 047161 653 DCKRLRSLSEL---------PSDIKKVRVHGCTSLATISDALRSCNSATS 693 (720)
Q Consensus 653 ~c~~L~~lp~l---------p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~ 693 (720)
+|...+..... .+++..+.+.+|..++.+. +..-.++|+.
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~ 774 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTS 774 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccE
Confidence 88754322111 2245566666666555443 2223344554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-11 Score=130.11 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=120.7
Q ss_pred cceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccC
Q 047161 426 KTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND 505 (720)
Q Consensus 426 ~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~ 505 (720)
.+..+.+.++.+..-... . -...+...++|+.|+++++. +...+. ....++..+..+++|++|++++
T Consensus 24 ~L~~l~l~~~~l~~~~~~--~--i~~~l~~~~~l~~l~l~~~~-------~~~~~~--~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAK--A--LASALRPQPSLKELCLSLNE-------TGRIPR--GLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred hccEEeecCCCCcHHHHH--H--HHHHHhhCCCceEEeccccc-------cCCcch--HHHHHHHHHHhcCceeEEEccC
Confidence 366666666655321000 0 00124455667777777654 111111 1233344466777888888888
Q ss_pred CCCCcccCCCCCCCCC---CCEEeccCCCCCc----ccCcCcCCC-CCCCEEeccCcccccCC----ccccCCcCCceEE
Q 047161 506 CKILVRLPSTINGWKS---LRTVNLSRCSKLE----NMPESLGQM-ESLEELDVSGTVIRQPV----PSIFFPSRILKVY 573 (720)
Q Consensus 506 n~~~~~lp~~i~~l~~---L~~L~L~~~~~l~----~lp~~~~~L-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L 573 (720)
|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.+++.. ...+..+++|+.|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 7765445544444444 8888888776542 223344555 77888888888776321 1122223567777
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-----cccccccCCCCCce
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-----SLRGTINHLPKFKH 648 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~ 648 (720)
++.+|.+....... ....+..+++| +.|++++|.+. .++..+..+++|++
T Consensus 171 ~l~~n~l~~~~~~~--------------------l~~~l~~~~~L-----~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 171 NLANNGIGDAGIRA--------------------LAEGLKANCNL-----EVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred ECcCCCCchHHHHH--------------------HHHHHHhCCCC-----CEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 77655443210000 00011222333 55666666554 23344556677777
Q ss_pred eeccccccccc-----cC-Cc---ccccceEeeecCccc----ccchhhccCchhHhhhhhhcc
Q 047161 649 LKLDDCKRLRS-----LS-EL---PSDIKKVRVHGCTSL----ATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 649 L~L~~c~~L~~-----lp-~l---p~~L~~L~l~~c~~L----~~lp~~~~~~~~L~~l~~~~n 699 (720)
|++++|+ +.. +. .+ .+.|++|++.+|.-- ..+...+..+++|+.+++..|
T Consensus 226 L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 226 LNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred EecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 7777764 221 11 11 145777777776421 233444455566666665554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-10 Score=120.13 Aligned_cols=231 Identities=20% Similarity=0.195 Sum_probs=139.5
Q ss_pred cceEEEecCCCCC-----CCCCCC-CCCcceEeeCCCCchhHHhhhccCccc-cCCCCCCCCceeeecCCCCCCCCCCCC
Q 047161 404 ELRLLQWHGYPLK-----SLPSSM-EMDKTLECNMCYRRIEQFWKGIKNLIR-TPDFTGAPNLEELILDGCKRLQNCTSL 476 (720)
Q Consensus 404 ~l~~L~~~~~~~~-----~lp~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~-~~~~~~l~~L~~L~L~~~~~l~~~~~L 476 (720)
.++.+.+.++.+. .++..+ ....+.++.+.++.+...... +.. ...+..+++|+.|++++|. +
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~-------~ 93 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG---LQSLLQGLTKGCGLQELDLSDNA-------L 93 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH---HHHHHHHHHhcCceeEEEccCCC-------C
Confidence 3888899988874 234333 234578888887765421000 000 1235668899999999987 2
Q ss_pred cc-cCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCC-CCCCEEeccCCCCCc----ccCcCcCCCCCC
Q 047161 477 TT-LPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGW-KSLRTVNLSRCSKLE----NMPESLGQMESL 546 (720)
Q Consensus 477 ~~-lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~~~~L~~L 546 (720)
.. .+.. +...... ++|++|++++|.+.. .+...+..+ ++|+.|++++|.+.+ .++..+..+++|
T Consensus 94 ~~~~~~~-----~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 94 GPDGCGV-----LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ChhHHHH-----HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 21 1211 1111223 559999999998552 334455667 899999999998763 344567778899
Q ss_pred CEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCccc
Q 047161 547 EELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN 622 (720)
Q Consensus 547 ~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~ 622 (720)
++|++++|.+.+.. +......++|+.|++++|.+.......+ ...+..+++|
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------------~~~~~~~~~L---- 223 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL--------------------AETLASLKSL---- 223 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH--------------------HHHhcccCCC----
Confidence 99999999987421 1112222689999997776542211100 0113344444
Q ss_pred ccEEECCCCCCccc-cccc-----cCCCCCceeeccccccc--------cccCCcccccceEeeecCc
Q 047161 623 LKKLNLRRNNFVSL-RGTI-----NHLPKFKHLKLDDCKRL--------RSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 623 L~~L~Ls~n~l~~l-p~~i-----~~l~~L~~L~L~~c~~L--------~~lp~lp~~L~~L~l~~c~ 676 (720)
+.|++++|.++.. +..+ ...+.|++|++++|..- ..++.+ ++|+.++++++.
T Consensus 224 -~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~ 289 (319)
T cd00116 224 -EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNK 289 (319)
T ss_pred -CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCC
Confidence 6778888877631 1111 12478888888888521 122333 468888888755
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.7e-10 Score=115.17 Aligned_cols=173 Identities=25% Similarity=0.359 Sum_probs=113.2
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC-cchhccCCcceEEEecccc---CCcccCccccceEE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN-TAFLKMTNLRLLKIHNLQL---PAGLESLSDELRLL 408 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l---~~~~~~l~~~l~~L 408 (720)
...++|-|.++.. |++...+..|-....+.|.+... ++..++..|.+++++.|++ |..++.++ |+.|
T Consensus 78 ~~aDlsrNR~~el-------p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--Lkvl 148 (722)
T KOG0532|consen 78 VFADLSRNRFSEL-------PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--LKVL 148 (722)
T ss_pred hhhhccccccccC-------chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc--ceeE
Confidence 3456677766544 55555455444444444444433 3667777888888888866 55566665 7778
Q ss_pred EecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhH
Q 047161 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488 (720)
Q Consensus 409 ~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l 488 (720)
.+.+|.++.+|.. ++.++.|..||.+.|. +..+|..
T Consensus 149 i~sNNkl~~lp~~-------------------------------ig~~~tl~~ld~s~ne-------i~slpsq------ 184 (722)
T KOG0532|consen 149 IVSNNKLTSLPEE-------------------------------IGLLPTLAHLDVSKNE-------IQSLPSQ------ 184 (722)
T ss_pred EEecCccccCCcc-------------------------------cccchhHHHhhhhhhh-------hhhchHH------
Confidence 8888888888865 3455566777777766 4566665
Q ss_pred HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 489 QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 489 ~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
++.+.+|+.|++++|+ ...+|+.++.| .|..||++.| .+..+|-.|.+|+.|++|-|.+|.+...|.++.
T Consensus 185 ---l~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 185 ---LGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ---hhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 6677777777777776 45667666644 3677777765 455677777777777777777777776665544
|
|
| >smart00255 TIR Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=90.70 Aligned_cols=90 Identities=38% Similarity=0.618 Sum_probs=70.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc--------------------Cccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------------------PTVVRKQT 60 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i--------------------p~~vr~~~ 60 (720)
|+.+|.|+. ...|.... ++.+||++|++.|+|+|++|..|.||..|+..+ |.++..+.
T Consensus 30 ~~~v~~d~~-~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~ 107 (140)
T smart00255 30 GLCVFIDDF-EPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQP 107 (140)
T ss_pred CcEEEecCc-ccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence 688999985 33333334 999999999999999999999999999999776 56688888
Q ss_pred chHHHHHHHHHHHhhhChHHHHHHHHHHHHhcc
Q 047161 61 RSFHEAFAKHEEAFRESTEKVQNWRHALTEVAN 93 (720)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~ 93 (720)
+.+..++..+..+...+..+ ..|++.+..+++
T Consensus 108 ~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 108 GKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred cHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 89999887774444333332 689998877653
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-09 Score=96.08 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC-CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhc
Q 047161 415 LKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT-GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIE 493 (720)
Q Consensus 415 ~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~-~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~ 493 (720)
+..+|......++++|++.++.+..+ ..++ .+.+|+.|+|++|. ++.++. +.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I----------e~L~~~l~~L~~L~Ls~N~-------I~~l~~----------l~ 61 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI----------ENLGATLDKLEVLDLSNNQ-------ITKLEG----------LP 61 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS---------S--TT------------
T ss_pred cccccccccccccccccccccccccc----------cchhhhhcCCCEEECCCCC-------CccccC----------cc
Confidence 33444444444555566666555443 1233 45677777777776 455543 55
Q ss_pred cCCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc---cccCCc
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP---SIFFPS 567 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~---~~~~~~ 567 (720)
.+++|+.|++++|. +..+++.+ ..+++|++|++++|.+. .+. ..+..+++|+.|++.+|++...+. .+...+
T Consensus 62 ~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 62 GLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp --TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred ChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 67777777777777 34454333 24677777777776542 222 235567777777777777765432 122334
Q ss_pred CCceEEEe
Q 047161 568 RILKVYLF 575 (720)
Q Consensus 568 ~~L~~L~l 575 (720)
++|+.|+.
T Consensus 140 P~Lk~LD~ 147 (175)
T PF14580_consen 140 PSLKVLDG 147 (175)
T ss_dssp TT-SEETT
T ss_pred ChhheeCC
Confidence 66666654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-08 Score=108.80 Aligned_cols=174 Identities=26% Similarity=0.357 Sum_probs=102.5
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCC-CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLT-GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~-~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
.++.+..|++.+|. +..++.. .+.+. +|+.|++++|. +..+|..++.+++|+.|++++|. +
T Consensus 114 ~~~~l~~L~l~~n~-------i~~i~~~---------~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 114 ELTNLTSLDLDNNN-------ITDIPPL---------IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred cccceeEEecCCcc-------cccCccc---------cccchhhcccccccccc-hhhhhhhhhccccccccccCCch-h
Confidence 34567777777766 4566664 45553 77777777777 56666667777778888777764 5
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
..+|...+.+++|+.|++++|.+..+|+.+... ..|+.|.+.+|.... ....+..+..+..+.+..+.... .+..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~-~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL-SALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhh-hhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccchhc
Confidence 556666657777777778777777777654333 557777776553111 11112222222222222221111 012234
Q ss_pred CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 614 GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 614 ~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
.++++ +.|++++|.++.++. +..+.+|+.|+++++.
T Consensus 253 ~l~~l-----~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 NLSNL-----ETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccc-----ceecccccccccccc-ccccCccCEEeccCcc
Confidence 44443 666777777776665 6667777777777765
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-08 Score=105.73 Aligned_cols=196 Identities=23% Similarity=0.296 Sum_probs=140.1
Q ss_pred eEEEeccccCCcccCcc--ccceEEEecCCCCCCCCCCCCCC--cceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 386 LLKIHNLQLPAGLESLS--DELRLLQWHGYPLKSLPSSMEMD--KTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 386 ~L~l~~~~l~~~~~~l~--~~l~~L~~~~~~~~~lp~~~~~~--~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
.+....+.+......+. ..+..+.+.++.+..+|...... ++..+++..|++..+. ..+..+++|+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~---------~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP---------SPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh---------hhhhccccccc
Confidence 46666666533222222 35888999999999999877765 7888888888887763 23678888999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|++++|. +..+|.. .+.++.|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.
T Consensus 168 L~l~~N~-------l~~l~~~---------~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~ 229 (394)
T COG4886 168 LDLSFND-------LSDLPKL---------LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLS 229 (394)
T ss_pred cccCCch-------hhhhhhh---------hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhh
Confidence 9999888 6777765 4468888999999888 67788877677779999988874 445666788
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
++.++..|.+.+|++...+..+..+ .+++.|++++|.+..+ +.++.+.+|
T Consensus 230 ~~~~l~~l~l~~n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i--------------------------~~~~~~~~l--- 279 (394)
T COG4886 230 NLKNLSGLELSNNKLEDLPESIGNL-SNLETLDLSNNQISSI--------------------------SSLGSLTNL--- 279 (394)
T ss_pred hcccccccccCCceeeeccchhccc-cccceecccccccccc--------------------------ccccccCcc---
Confidence 8888888888888877665444444 6788888765543332 114444444
Q ss_pred cccEEECCCCCCccccccc
Q 047161 622 NLKKLNLRRNNFVSLRGTI 640 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i 640 (720)
+.|++++|.+...+...
T Consensus 280 --~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 280 --RELDLSGNSLSNALPLI 296 (394)
T ss_pred --CEEeccCccccccchhh
Confidence 78999999888665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-08 Score=92.25 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=15.5
Q ss_pred CCCCcEEeccCCCCCcccCCCCC-CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTIN-GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
..+++.|+|++|.+ ..+ +.++ .+.+|+.|++++|. +..++ .+..++.|++|++++|.++.+.+.....+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I-~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQI-STI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 33455555555542 222 2233 34455555555543 22232 34445555555555555554433222222444444
Q ss_pred EeecC
Q 047161 574 LFVDT 578 (720)
Q Consensus 574 ~l~~~ 578 (720)
.+.+|
T Consensus 94 ~L~~N 98 (175)
T PF14580_consen 94 YLSNN 98 (175)
T ss_dssp E-TTS
T ss_pred ECcCC
Confidence 44333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=106.74 Aligned_cols=105 Identities=29% Similarity=0.363 Sum_probs=75.6
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
++.|+|++|.-- ..+|.. ++.+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|.
T Consensus 420 v~~L~L~~n~L~------g~ip~~---------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQGLR------GFIPND---------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEECCCCCcc------ccCCHH---------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 666777766511 234443 78888888888888887778888888888888888888888888888
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCC-cCCceEEEeecC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFP-SRILKVYLFVDT 578 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~~ 578 (720)
.+++|++|++|+|++|.+.+..|..+.. ..++..+++.+|
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 8888888888888888888765544322 234455555444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=106.52 Aligned_cols=83 Identities=27% Similarity=0.316 Sum_probs=61.0
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888777888888888888888888887777888778888888888888888877666544444555555554
Q ss_pred cCC
Q 047161 577 DTR 579 (720)
Q Consensus 577 ~~~ 579 (720)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-08 Score=101.81 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=18.2
Q ss_pred cEEECCCCCCcccc--ccccCCCCCceeecccc
Q 047161 624 KKLNLRRNNFVSLR--GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 624 ~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c 654 (720)
++|+++.|++..++ ..+..+++|+.|.+..+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccc
Confidence 66677777766555 23445566666665444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-08 Score=101.27 Aligned_cols=201 Identities=17% Similarity=0.205 Sum_probs=122.9
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~ 531 (720)
++++.|+...|.++. +...+.+ .....+++++.|||++|-+... +-.-...|++|+.|+|+.|.
T Consensus 118 sn~kkL~~IsLdn~~-------V~~~~~~-------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-------VEDAGIE-------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCcc-------ccccchh-------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 567778888888776 2222221 1166788888999988754322 22233568888888888886
Q ss_pred CCcccCcC-cCCCCCCCEEeccCcccccC-CccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc-
Q 047161 532 KLENMPES-LGQMESLEELDVSGTVIRQP-VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM- 608 (720)
Q Consensus 532 ~l~~lp~~-~~~L~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~- 608 (720)
+..-.... -..+++|+.|.|+.|.++.- ...+...+++|..|.+..|...........-+..++.|+++.++..+..
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 54322211 23567788888888877632 1223333578888888877644445555566677788888877766543
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCccc--ccc-----ccCCCCCceeecccccc--ccccCCcc--cccceEeee
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSL--RGT-----INHLPKFKHLKLDDCKR--LRSLSELP--SDIKKVRVH 673 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~l--p~~-----i~~l~~L~~L~L~~c~~--L~~lp~lp--~~L~~L~l~ 673 (720)
.+..+.++.| ..|+++.+.+.++ |+. ...+++|++|++..|+- +.++..+- ++|+.|.+.
T Consensus 264 ~~~~~~l~~L-----~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 264 GYKVGTLPGL-----NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccch-----hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 2335666665 4556666766643 433 35688888888888863 33333222 345555543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-08 Score=96.46 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=83.4
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceE
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 572 (720)
...+.|+.||||+|. +..+.+++.-++.++.|++|+|.+.. + ..+..|++|++|||++|.+.....-...+ .+.++
T Consensus 281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-GNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKL-GNIKT 356 (490)
T ss_pred chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhh-cCEee
Confidence 335567777777776 56667777667777777777775433 2 23666777777777777665543322222 56666
Q ss_pred EEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc--ccccCCCCCceee
Q 047161 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLK 650 (720)
Q Consensus 573 L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~ 650 (720)
|.++.|.+ ..++++..|- +|..||+++|++..+. ..|+++|.|+.+.
T Consensus 357 L~La~N~i-----------------------------E~LSGL~KLY--SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 357 LKLAQNKI-----------------------------ETLSGLRKLY--SLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred eehhhhhH-----------------------------hhhhhhHhhh--hheeccccccchhhHHHhcccccccHHHHHh
Confidence 66644322 1233333332 3478899999988765 5789999999999
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|.+||
T Consensus 406 L~~NP 410 (490)
T KOG1259|consen 406 LTGNP 410 (490)
T ss_pred hcCCC
Confidence 99997
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-07 Score=70.34 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccc
Q 047161 496 TGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l 556 (720)
++|++|++++|++ ..+| ..+.++++|++|++++|.+...-|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777663 3444 4556677777777776655444445666777777777776653
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=90.76 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=27.8
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n 554 (720)
+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.. |+.|+++.+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n 122 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGS 122 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCC
Confidence 46666666665555666544 246666666666555555532 444555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=90.44 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=56.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~~~~~~~~L 570 (720)
+..+.+++.|++++|. +..+|. -..+|++|.+++|..+..+|..+. ++|++|++++| .+..+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------ccc
Confidence 5667999999999996 788883 245799999999999888987663 58999999998 555444 557
Q ss_pred eEEEeec
Q 047161 571 KVYLFVD 577 (720)
Q Consensus 571 ~~L~l~~ 577 (720)
+.|.+..
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 7777643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-07 Score=89.03 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=29.2
Q ss_pred ccEEECCCCCCccccccccCCCCCceeeccccc--c---ccccCCcccccceEeeecCc
Q 047161 623 LKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--R---LRSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 623 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~--~---L~~lp~lp~~L~~L~l~~c~ 676 (720)
++.|.|++|.+..+. .++.+-+|..|++++|+ + ...+..+| +|+.|.+.++|
T Consensus 354 IKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCC
Confidence 356666777665554 45566666777777664 1 12223333 36666666655
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.4e-07 Score=68.76 Aligned_cols=60 Identities=32% Similarity=0.447 Sum_probs=52.5
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
|+|++|++++|. ++.+|... |..+++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-------l~~i~~~~--------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-------LTEIPPDS--------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-------ESEECTTT--------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-------CCccCHHH--------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999997 68888765 8889999999999999766666788999999999999985
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-06 Score=94.17 Aligned_cols=176 Identities=21% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|..|++.+|. ++.+... +..+++|++|++++|.+ +.+ ..+..++.|+.|++++|.+
T Consensus 91 l~~~~~l~~l~l~~n~-------i~~i~~~---------l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-------IEKIENL---------LSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred cccccceeeeeccccc-------hhhcccc---------hhhhhcchheecccccc-ccc-cchhhccchhhheeccCcc
Confidence 5667777777777776 4555443 55577777777777773 333 2355667777777777743
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
..+ ..+..+++|+.+++++|.+..+.+.....+.+++.+.+.+|....+...... ..+..+.+..+ .+..+
T Consensus 153 -~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~--~~l~~~~l~~n-----~i~~~ 223 (414)
T KOG0531|consen 153 -SDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL--KKLVLLSLLDN-----KISKL 223 (414)
T ss_pred -hhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH--HHHHHhhcccc-----cceec
Confidence 333 2355577777777777777766552012226666666666655443222111 11111112211 11222
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
.++..+..+.|+.+++++|.+..++..+..+.++..|++.++.
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 2333222213577788888887776667777888888887764
|
|
| >PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.6e-07 Score=75.79 Aligned_cols=51 Identities=33% Similarity=0.606 Sum_probs=43.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+.+|.|. ++..|+.+...+.+||++|++.|+++|++|..|.||..|+...
T Consensus 24 g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a 74 (102)
T PF13676_consen 24 GIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAA 74 (102)
T ss_dssp T--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHH
T ss_pred CCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHH
Confidence 78999998 8999999999999999999999999999999999999999554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.7e-07 Score=88.04 Aligned_cols=194 Identities=20% Similarity=0.208 Sum_probs=118.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
.|++|||+... +...++...+..+.+|+.|.|.++.+...+-..|.+-.+|+.|+|++|+..++..
T Consensus 186 Rlq~lDLS~s~--------------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSV--------------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhHHhhcchhh--------------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH
Confidence 58889998743 1122233336778888888888888666666677778888999998887665443
Q ss_pred --cCcCCCCCCCEEeccCcccccCCcc--ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-C
Q 047161 538 --ESLGQMESLEELDVSGTVIRQPVPS--IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-L 612 (720)
Q Consensus 538 --~~~~~L~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l 612 (720)
-.+.+++.|..|+|+-|.+....-. +..-..+|..|+++++.-+- ....+.. .
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl----------------------~~sh~~tL~ 309 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL----------------------QKSHLSTLV 309 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh----------------------hhhHHHHHH
Confidence 2366788888888888865432211 11112567777775442111 0001111 1
Q ss_pred CCCCCCCcccccEEECCCCC-Cc-cccccccCCCCCceeeccccccc-----cccCCcccccceEeeecCcccccchhhc
Q 047161 613 SGLCSLTELNLKKLNLRRNN-FV-SLRGTINHLPKFKHLKLDDCKRL-----RSLSELPSDIKKVRVHGCTSLATISDAL 685 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L-----~~lp~lp~~L~~L~l~~c~~L~~lp~~~ 685 (720)
..+++| .+||||+|. ++ ..-..+..++.|++|.++.|-.+ -.+... |+|.+|++.||-.=+.+--..
T Consensus 310 ~rcp~l-----~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~-psl~yLdv~g~vsdt~mel~~ 383 (419)
T KOG2120|consen 310 RRCPNL-----VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK-PSLVYLDVFGCVSDTTMELLK 383 (419)
T ss_pred HhCCce-----eeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccC-cceEEEEeccccCchHHHHHH
Confidence 234444 678888874 32 22234578999999999999643 112222 569999999987654444333
Q ss_pred cCchhHhh
Q 047161 686 RSCNSATS 693 (720)
Q Consensus 686 ~~~~~L~~ 693 (720)
..|++|+.
T Consensus 384 e~~~~lki 391 (419)
T KOG2120|consen 384 EMLSHLKI 391 (419)
T ss_pred HhCccccc
Confidence 44555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.5e-07 Score=96.84 Aligned_cols=173 Identities=23% Similarity=0.315 Sum_probs=107.3
Q ss_pred hhccCCcceEEEeccccC--CcccCccccceEEEecCC----------CCCCCCCCCCCCcceEeeCCCCchhHHhhhcc
Q 047161 378 FLKMTNLRLLKIHNLQLP--AGLESLSDELRLLQWHGY----------PLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK 445 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~~l~--~~~~~l~~~l~~L~~~~~----------~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~ 445 (720)
+.....|+.|.+.++.+. .++..+...+..|..++. ....+.+.+.+..+...+.++|.+..+...
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S-- 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES-- 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH--
Confidence 445667777777776553 222222223333322211 122444455566777777777777655432
Q ss_pred CccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCE
Q 047161 446 NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRT 524 (720)
Q Consensus 446 ~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~ 524 (720)
+.-++.|+.|+|++|+ ++.+. + +..+++|++|||++|. +..+|. +...+. |+.
T Consensus 183 -------Lqll~ale~LnLshNk-------~~~v~-~---------Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 183 -------LQLLPALESLNLSHNK-------FTKVD-N---------LRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred -------HHHHHHhhhhccchhh-------hhhhH-H---------HHhcccccccccccch-hccccccchhhhh-hee
Confidence 4556788999999987 34444 2 7778889999999988 566664 223344 889
Q ss_pred EeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCC
Q 047161 525 VNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 525 L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~ 580 (720)
|++++|. +.++ ..+.+|.+|+.||+++|-+.+.-. .....+..|+.|.+.+|.+
T Consensus 237 L~lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9998874 4444 357888999999999987765321 1112236777777776654
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=69.21 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=81.4
Q ss_pred ccccchhHHHHHHhhhccCCCeEEEEEecCCCccccc----------------------hhcHHHHHHHH----------
Q 047161 130 LVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSE----------------------KDGLIALQKQL---------- 177 (720)
Q Consensus 130 ~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~----------------------~~~~~~~~~~i---------- 177 (720)
++||++++++|.+.+.. +..+.+.|+|..|++.|. ..........+
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 68999999999998854 335667789999981110 00111111111
Q ss_pred HHhhh---hcccc------eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH-----------HHHHHhccCCCCCCCC
Q 047161 178 LSKTL---MEIDI------EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR-----------QLNRLAGKHSWFGSGS 235 (720)
Q Consensus 178 l~~~~---~~~~~------~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs 235 (720)
...+. ..... ...........+-+.+. +++++||+||+.... .+..+........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 11110 00000 00122233344444443 456999999987554 1223333322233344
Q ss_pred eEEEEcCChhhhhh--------ccccceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCCchHHH
Q 047161 236 RIIIPTRDEHLLRT--------LRVDGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 236 rIivTTR~~~v~~~--------~~~~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
.| +++....+... .+-...+.+++++.+++++++...+-.. .. +.-.+..++|...+||.|..|.
T Consensus 159 ~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 159 IV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred EE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 44 44444444433 1223359999999999999998864332 11 1123445889999999998775
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.1e-06 Score=81.22 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=52.8
Q ss_pred CCCCCCCCcccccEEECCCCCCc-----cccccccCCCCCceeecccccccccc---------CCcccccceEeeecCcc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFV-----SLRGTINHLPKFKHLKLDDCKRLRSL---------SELPSDIKKVRVHGCTS 677 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~l---------p~lp~~L~~L~l~~c~~ 677 (720)
+..+++| +.|||.+|.|+ .+...++.+++|+.|++++|- ++.= ....|+|+.|.+.+|.-
T Consensus 209 l~~~~~L-----evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 209 LEHCPHL-----EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhCCcc-----eeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchh
Confidence 5667766 77888888776 334556778899999999994 3322 22335688888888753
Q ss_pred ccc----chhhccCchhHhhhhhhcc
Q 047161 678 LAT----ISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 678 L~~----lp~~~~~~~~L~~l~~~~n 699 (720)
-.. +-..+...+.|..|++..|
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 211 1123344677777777665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=1.1e-06 Score=95.23 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
.|.+.+.++|. +..+.+++.-++.|+.|||++|.+... +.+..|+.|.+|||++|.+..+|.-.... ..|+.|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhh-hhheeeeec
Confidence 56667777776 566677777788888888888765442 26777888888888888887776544444 447888876
Q ss_pred cCCCCC
Q 047161 577 DTRDHR 582 (720)
Q Consensus 577 ~~~~~~ 582 (720)
+|.+..
T Consensus 241 nN~l~t 246 (1096)
T KOG1859|consen 241 NNALTT 246 (1096)
T ss_pred ccHHHh
Confidence 665443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.7e-05 Score=79.41 Aligned_cols=116 Identities=25% Similarity=0.347 Sum_probs=66.4
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCCCCCCEEecc
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l~~L~~L~L~ 528 (720)
|...+.|+.+.++.|.- -|... ..+...+.++++|+.|||++|.+.. .+...++.+++|+.|+++
T Consensus 181 ~~~~~~leevr~~qN~I---------~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGI---------RPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred HHhccccceEEEecccc---------cCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 44556777777777651 11111 2233347778888888888877543 233445567788888888
Q ss_pred CCCCCcccCc----Cc-CCCCCCCEEeccCcccccCC-----ccccCCcCCceEEEeecCCC
Q 047161 529 RCSKLENMPE----SL-GQMESLEELDVSGTVIRQPV-----PSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 529 ~~~~l~~lp~----~~-~~L~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~ 580 (720)
+|.....-.. .+ ...++|+.|.+.+|.++.-- ..... .+.|..|.+.+|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 8754332111 11 23567888888887765421 11112 26677777766665
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=70.49 Aligned_cols=198 Identities=16% Similarity=0.111 Sum_probs=112.6
Q ss_pred CCCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccc-------------------------hhcHHHHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSE-------------------------KDGLIALQKQL 177 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~-------------------------~~~~~~~~~~i 177 (720)
..++.++||++++++|...+... ......+-|+|..|++.+. ..+...+..++
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35678999999999999888432 2334456799999992111 12233455566
Q ss_pred HHhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH------HHHHHhccCCCCCCCCe--EEEEcCChhh
Q 047161 178 LSKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR------QLNRLAGKHSWFGSGSR--IIIPTRDEHL 246 (720)
Q Consensus 178 l~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IivTTR~~~v 246 (720)
+.++...... ...+..+....+.+.++ ++..+||||+++... .+..+...... .++++ ||.++.+..+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 6664321111 11233455566667665 456899999998753 24444433222 23444 6667666544
Q ss_pred hhhcc-------ccceEecCCCCHHHHHHHHHHHh---cCC-CCC-chHHHHHHHHHHHhCCCchHHHHhhhhc-----c
Q 047161 247 LRTLR-------VDGVYKVEKLDDDEALELFNKRA---FDG-QPS-KDYVELIKRIVKYADGLPFALETLGSVL-----F 309 (720)
Q Consensus 247 ~~~~~-------~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~-~~~~~~~~~i~~~c~glPLai~~~g~~l-----~ 309 (720)
..... ....+.+++.+.++..+++..++ |.. ... ..++.+++.+....|..+.|+..+-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 33221 12367899999999999998775 322 222 2233333434333566777777654322 1
Q ss_pred C---CCHHHHHHHHhhh
Q 047161 310 G---RSVDGWRSTLERL 323 (720)
Q Consensus 310 ~---k~~~~W~~~l~~l 323 (720)
+ -+.+..+.+++++
T Consensus 266 ~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 1 1556666666544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.5e-05 Score=52.54 Aligned_cols=41 Identities=29% Similarity=0.560 Sum_probs=33.6
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL 663 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 663 (720)
+|++|++++|+++.+|..+++|++|+.|++++|+ +++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 3588999999999999889999999999999994 6665544
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.8e-05 Score=86.07 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=27.2
Q ss_pred cCCcceEEEeccccCCccc--CccccceEEEecCCCCCCCCC-CCCCCcceEeeCCCCchhH
Q 047161 381 MTNLRLLKIHNLQLPAGLE--SLSDELRLLQWHGYPLKSLPS-SMEMDKTLECNMCYRRIEQ 439 (720)
Q Consensus 381 l~~L~~L~l~~~~l~~~~~--~l~~~l~~L~~~~~~~~~lp~-~~~~~~l~~L~l~~~~i~~ 439 (720)
+..++.+.+..|.+..... .....+..+++.+|.+..+.. .-...++..|++++|.|..
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc
Confidence 3444444555555543111 112345666666666665554 2223444444444444443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=9e-05 Score=51.82 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=16.1
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
+|++|++++|. +..+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 45555555554 23444445555555555555543
|
... |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0083 Score=61.21 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred hcCCeEEEEecCCcH--HHHHHHhccCCC---CCCCCeEEEEcCChhhhhhc----------cccceEecCCCCHHHHHH
Q 047161 204 RRRNVLVVIDDAVHI--RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLRTL----------RVDGVYKVEKLDDDEALE 268 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~--~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~~~----------~~~~~~~l~~L~~~~s~~ 268 (720)
.++++++|+||++.. ..++.+...... ......|++|... .....+ .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 578899999999874 346665532221 1122244555543 222111 123467899999999999
Q ss_pred HHHHHhcCC--CCC-chHHHHHHHHHHHhCCCchHHHHhhhhc
Q 047161 269 LFNKRAFDG--QPS-KDYVELIKRIVKYADGLPFALETLGSVL 308 (720)
Q Consensus 269 Lf~~~af~~--~~~-~~~~~~~~~i~~~c~glPLai~~~g~~l 308 (720)
++...+-.. ... .--.+..+.|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 888765322 111 1124677889999999999999888776
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=63.81 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccc---hhhHHHHHHHHhcCCeEEEEecCCcH---HHHH-
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRND---FDGIKMIKRELRRRNVLVVIDDAVHI---RQLN- 222 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~---~~~~~~l~~~l~~kr~LlVLDdv~~~---~~~~- 222 (720)
.+.+.|||..|+ +..++...+..++.... .....+. ......+.+.++ +.-+||+||+|.. .+|+
T Consensus 39 ~~~l~l~G~~G~------GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~ 111 (229)
T PRK06893 39 QPFFYIWGGKSS------GKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWEL 111 (229)
T ss_pred CCeEEEECCCCC------CHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHH
Confidence 356889999999 55566666665532211 1111111 111222333333 3358999999963 4455
Q ss_pred HHhccCCCC-CCCCeEEEEcCC----------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHH
Q 047161 223 RLAGKHSWF-GSGSRIIIPTRD----------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKR 289 (720)
Q Consensus 223 ~l~~~~~~~-~~gsrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~ 289 (720)
.+...+... ..|+.|||||.+ +.+...++....+++++++.++.++++.++++.. ..+ ++...-
T Consensus 112 ~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~ 188 (229)
T PRK06893 112 AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANF 188 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHH
Confidence 233323222 246666555443 4677777767799999999999999999999754 222 234455
Q ss_pred HHHHhCCCchHH
Q 047161 290 IVKYADGLPFAL 301 (720)
Q Consensus 290 i~~~c~glPLai 301 (720)
+++.+.|-.-++
T Consensus 189 L~~~~~~d~r~l 200 (229)
T PRK06893 189 LLKRLDRDMHTL 200 (229)
T ss_pred HHHhccCCHHHH
Confidence 666676654433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=1.6e-05 Score=81.28 Aligned_cols=248 Identities=20% Similarity=0.326 Sum_probs=119.8
Q ss_pred CCCCCceeeecCCCCCC---------CCCCCCcccC----ccchhhhHHHHhccCCCCcEEeccCCCCCcc--cCCCCCC
Q 047161 454 TGAPNLEELILDGCKRL---------QNCTSLTTLP----REIATESLQKLIELLTGLVFLNLNDCKILVR--LPSTING 518 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l---------~~~~~L~~lp----~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~--lp~~i~~ 518 (720)
..++++++|.+.+|..+ ..|++++.+. .++....+......+++|.||++++|..+.. +-.-..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 34566666666666533 1233333321 1122223333456688888888888864432 1122345
Q ss_pred CCCCCEEeccCCCCCcc--cCcCcCCCCCCCEEeccCcccccCC--ccccCCcCCceEEEeecCCCCCCCCCcc----cc
Q 047161 519 WKSLRTVNLSRCSKLEN--MPESLGQMESLEELDVSGTVIRQPV--PSIFFPSRILKVYLFVDTRDHRTSSSSW----HL 590 (720)
Q Consensus 519 l~~L~~L~L~~~~~l~~--lp~~~~~L~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~ 590 (720)
+..++.+.+.||...+. +-..-+.+..+-.+++.+|...... -.+...+..|+.|+.+++... ....+ ..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~--~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI--TDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC--chHHHHHHhcC
Confidence 56666776667643321 1011122333444444444221111 111222345555555444321 11110 01
Q ss_pred cccccccccCCC-CcccccCCCC-CCCCCCCcccccEEECCCCCCc---cccccccCCCCCceeecccccccccc-----
Q 047161 591 WFPFSLMQKGSS-DSMALMLPSL-SGLCSLTELNLKKLNLRRNNFV---SLRGTINHLPKFKHLKLDDCKRLRSL----- 660 (720)
Q Consensus 591 l~~l~~l~l~~~-~~~~~~~~~l-~~l~~L~~L~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l----- 660 (720)
..+|+.+.+... .+.+..+..+ .+.+.| +.+++.++... ++-.--.+++.|+.|.|++|.....-
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-----e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHL-----ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhh-----hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 122222222211 1112222222 233444 45555554322 12222357889999999998754443
Q ss_pred CC---cccccceEeeecCcccccch-hhccCchhHhhhhhhcccchhHHHHHh
Q 047161 661 SE---LPSDIKKVRVHGCTSLATIS-DALRSCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 661 p~---lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
.. --..|+.|.+.+|+.+..-- ..+..|++|+. ...+.|...++..+.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler-i~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER-IELIDCQDVTKEAIS 445 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccce-eeeechhhhhhhhhH
Confidence 11 12468889999999875544 56777888888 555578887766554
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=60.55 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=49.5
Q ss_pred hcCCeEEEEecCCcHHH---------HHHHh-ccCCC-CCCCCeEEEEcCChhh---hhhccccceEecCCCCHHHHHHH
Q 047161 204 RRRNVLVVIDDAVHIRQ---------LNRLA-GKHSW-FGSGSRIIIPTRDEHL---LRTLRVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~~---------~~~l~-~~~~~-~~~gsrIivTTR~~~v---~~~~~~~~~~~l~~L~~~~s~~L 269 (720)
+.+++++|+|++++... +..+. .-+.. ..++.+||||||.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999986432 22222 22221 2468999999998766 33344456899999999999999
Q ss_pred HHHH
Q 047161 270 FNKR 273 (720)
Q Consensus 270 f~~~ 273 (720)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8664
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0069 Score=63.08 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKREL 203 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~~l 203 (720)
.++||++..++++..++... ......+-++|+.|+ +...+.+.+..++ +..-... .........+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~------GKT~la~~ia~~~-~~~~~~~~~~~~~~~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGL------GKTTLAHIIANEM-GVNLKITSGPALEKPGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCC------CHHHHHHHHHHHh-CCCEEEeccchhcCchhHHHHH
Confidence 46999999999998887521 233556779999999 4444555555542 2110000 00001112222222
Q ss_pred h--cCCeEEEEecCCcH--HHHHHHhccCC-------------------CCCCCCeEEEEcCChhhhhhc--cccceEec
Q 047161 204 R--RRNVLVVIDDAVHI--RQLNRLAGKHS-------------------WFGSGSRIIIPTRDEHLLRTL--RVDGVYKV 258 (720)
Q Consensus 204 ~--~kr~LlVLDdv~~~--~~~~~l~~~~~-------------------~~~~gsrIivTTR~~~v~~~~--~~~~~~~l 258 (720)
. +...++++||+... .+.+.+...+. ...+..-|..||+...+.... .....+++
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRL 156 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEe
Confidence 1 35568889998743 22222222111 011245566677765543321 12347899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 259 EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 259 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
++++.+|..+++.+.+......- -.+....+++.|+|.|-.+..++.
T Consensus 157 ~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999999998875431111 134557899999999966554444
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=3e-05 Score=67.15 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=47.5
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCC-CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTIN-GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+....+|...+|++|. ...+|+.+. +.+.+.+|++++| .+..+|..+..|+.|+.|+++.|.+...|.-++.+ .+|
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L-~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL-IKL 125 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHH-HhH
Confidence 4445556666666665 455555543 3345666666665 34556666666666666666666666655544442 455
Q ss_pred eEEEeecC
Q 047161 571 KVYLFVDT 578 (720)
Q Consensus 571 ~~L~l~~~ 578 (720)
..|+..+|
T Consensus 126 ~~Lds~~n 133 (177)
T KOG4579|consen 126 DMLDSPEN 133 (177)
T ss_pred HHhcCCCC
Confidence 44444333
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=3.2e-05 Score=67.01 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+++...|...+|++|. ++.+|..+ ...++.++.|+|++|. +..+|..+..++.|+.|+++.|.
T Consensus 49 l~~~~el~~i~ls~N~-------fk~fp~kf--------t~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~- 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-------FKKFPKKF--------TIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP- 111 (177)
T ss_pred HhCCceEEEEecccch-------hhhCCHHH--------hhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-
Confidence 4556678889999988 67888764 4456689999999998 78899999999999999999986
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+...|..+..|.+|-.|+..+|.+..++-..+.
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~ 144 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPENARAEIDVDLFY 144 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCCccccCcHHHhc
Confidence 556788888899999999999998888766444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00024 Score=69.66 Aligned_cols=184 Identities=21% Similarity=0.168 Sum_probs=100.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC---cccCCCCCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL---VRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~---~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.++.++.|||.+|. +..-. .+-..+.++++|++|+|+.|.+. +.+| -.+.+|++|-|.|..
T Consensus 69 ~~~~v~elDL~~N~-------iSdWs------eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-------ISDWS------EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred Hhhhhhhhhcccch-------hccHH------HHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 46678888998876 22211 12222778999999999988743 2333 245789999888754
Q ss_pred CC-cccCcCcCCCCCCCEEeccCcccccCCcc---ccCCcCCceEEEeecCCCCCC-----CCCcccccccccccccCCC
Q 047161 532 KL-ENMPESLGQMESLEELDVSGTVIRQPVPS---IFFPSRILKVYLFVDTRDHRT-----SSSSWHLWFPFSLMQKGSS 602 (720)
Q Consensus 532 ~l-~~lp~~~~~L~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~l~~l~l~~~ 602 (720)
.. ......+..+|.+++|.++.|.+...... +-.-.+.+++|+...|..... ....|.+ ...+....+
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn---v~sv~v~e~ 209 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN---VNSVFVCEG 209 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc---chheeeecC
Confidence 32 12234466788888888888854432111 111113455555543322110 0011111 111111111
Q ss_pred Cccccc-CCCCCCCCCCCcccccEEECCCCCCcccc--ccccCCCCCceeeccccccccccCC
Q 047161 603 DSMALM-LPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 603 ~~~~~~-~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
.+.+.. ......++.+ ..|+|+.|++.++. ..+..+++|..|.++++|-+..+..
T Consensus 210 PlK~~s~ek~se~~p~~-----~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSL-----SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchhhcccCCCCCcc-----hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 111111 1113334443 35677888877654 4567899999999999997766654
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0081 Score=63.17 Aligned_cols=172 Identities=16% Similarity=0.089 Sum_probs=97.8
Q ss_pred CCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~ 201 (720)
..+++||++..++.+..++.. .......+-|+|+.|+ +...+.+.+.+.+ +..-... .........+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~------GKT~la~~ia~~l-~~~~~~~~~~~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGL------GKTTLANIIANEM-GVNIRITSGPALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCc------cHHHHHHHHHHHh-CCCeEEEecccccChHHHHH
Confidence 346799999999999877753 2334567789999999 4444444444442 2110000 000111122222
Q ss_pred HHh--cCCeEEEEecCCcHH--HHHHHhccCCC-------------------CCCCCeEEEEcCChhhhhhc--cccceE
Q 047161 202 ELR--RRNVLVVIDDAVHIR--QLNRLAGKHSW-------------------FGSGSRIIIPTRDEHLLRTL--RVDGVY 256 (720)
Q Consensus 202 ~l~--~kr~LlVLDdv~~~~--~~~~l~~~~~~-------------------~~~gsrIivTTR~~~v~~~~--~~~~~~ 256 (720)
.+. ++.-+|++||+.... ..+.+...+.. -.+.+-|..|||...+.... .....+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~ 175 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQ 175 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeee
Confidence 222 345688899987532 22222211110 01234566777755543332 123468
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhh
Q 047161 257 KVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
++++++.++..+++.+.+-..... --.+....|++.|+|.|-.+..+.
T Consensus 176 ~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 176 RLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHH
Confidence 999999999999999887544111 112457889999999996544443
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.034 Score=59.57 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=98.4
Q ss_pred CCCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccc-----------------------------hhcHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSE-----------------------------KDGLIAL 173 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~-----------------------------~~~~~~~ 173 (720)
..++.++||++++++|...+.. .......+-|+|++|++.+. ..+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 4456899999999999998853 12334567899999992211 0122345
Q ss_pred HHHHHHhhhh--cccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH-----HHHHHhccCCC-CCCCC--eEEEE
Q 047161 174 QKQLLSKTLM--EIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR-----QLNRLAGKHSW-FGSGS--RIIIP 240 (720)
Q Consensus 174 ~~~il~~~~~--~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~~gs--rIivT 240 (720)
..+++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+.....+ ..+++ .+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 5555555421 1100 00122233445555553 567899999998761 13333322111 11222 35555
Q ss_pred cCChhhhhhc------cc-cceEecCCCCHHHHHHHHHHHhc---CC-CCCchHHHHHHHHHHHhCCCch
Q 047161 241 TRDEHLLRTL------RV-DGVYKVEKLDDDEALELFNKRAF---DG-QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 241 TR~~~v~~~~------~~-~~~~~l~~L~~~~s~~Lf~~~af---~~-~~~~~~~~~~~~i~~~c~glPL 299 (720)
|........+ .. ...+.+++.+.+|-.+++..++- .. ...++..+...+++..+.|.|-
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 5544332211 11 24678999999999999988763 22 2333444555667777778873
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.015 Score=63.26 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCccccchhHHH---HHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccch-------hhHH
Q 047161 128 DDLVEMNSRLKK---LRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDF-------DGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~~---i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~-------~~~~ 197 (720)
+++||.+..+.. +..++. ......+-++|.+|++ ...+.+.+... ............ ...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtG------KTtLA~~ia~~-~~~~~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTG------KTTLARIIAGA-TDAPFEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCC------HHHHHHHHHHH-hCCCEEEEecccccHHHHHHHHH
Confidence 568888766554 666653 3455677889999994 33444444443 222211111111 1122
Q ss_pred HHHHHH-hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE--EcCChh--hhhhc-cccceEecCCCCHHHHHHH
Q 047161 198 MIKREL-RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII--PTRDEH--LLRTL-RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 198 ~l~~~l-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv--TTR~~~--v~~~~-~~~~~~~l~~L~~~~s~~L 269 (720)
..+... .+++.+|++|+++.. .+.+.|...+. .|..++| ||.+.. +.... .--..+++++++.++.+++
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 222111 357889999999864 45666665554 3555554 344432 11111 1125789999999999999
Q ss_pred HHHHhcCC-CCC-chHHHHHHHHHHHhCCCchHHHHh
Q 047161 270 FNKRAFDG-QPS-KDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 270 f~~~af~~-~~~-~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+.+.+-.. ... .--.+....+++.|+|.+..+..+
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 98854321 111 112455677889999988765443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00027 Score=80.71 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
.+|++|+++|...+ ... .....-..||+|+.|.+++-.+. ..+-.-..++++|..||+|++. ++.
T Consensus 122 ~nL~~LdI~G~~~~---------s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---------SNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN 187 (699)
T ss_pred HhhhhcCccccchh---------hcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC
Confidence 57888888885422 111 11111234788888888774422 1122223467888888888864 444
Q ss_pred cCcCcCCCCCCCEEeccCccccc--CCccccCCcCCceEEEeecCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQ--PVPSIFFPSRILKVYLFVDTR 579 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~~~ 579 (720)
+ .++++|++|+.|.+.+=.+.. ....++.+ ++|+.|+++...
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDK 231 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccc
Confidence 4 567788888888777655543 22234454 888888886543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=3.7e-05 Score=75.18 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCCEEeccCCCCCc-ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCC----cccccccc
Q 047161 520 KSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSS----SWHLWFPF 594 (720)
Q Consensus 520 ~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~l 594 (720)
+.|++|||+.-.+.. .+-..+..+..|+.|.|.++.+...+......-.+|+.|+++.+. ++... .+..+..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhH
Confidence 358999998754332 222345678889999999988876544333333889999986553 22222 23344445
Q ss_pred cccccCCCCcccccCCC-CCCCCCCCcccccEEECCCCC--Cc--cccccccCCCCCceeeccccccccc-----cCCcc
Q 047161 595 SLMQKGSSDSMALMLPS-LSGLCSLTELNLKKLNLRRNN--FV--SLRGTINHLPKFKHLKLDDCKRLRS-----LSELP 664 (720)
Q Consensus 595 ~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~L~Ls~n~--l~--~lp~~i~~l~~L~~L~L~~c~~L~~-----lp~lp 664 (720)
..++++-+......... ..... =+|..|+|+|+. +. .+..-...+++|..|+|++|..++. +-.+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf- 337 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF- 337 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-
Confidence 55554433322221111 00000 033677788762 21 2333346789999999999986654 1123
Q ss_pred cccceEeeecCcccccc-hhhccCchhHhhhhhhcccchhH
Q 047161 665 SDIKKVRVHGCTSLATI-SDALRSCNSATSRIFCINCPKLI 704 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~l-p~~~~~~~~L~~l~~~~nc~~l~ 704 (720)
+.|++|.++.|-.+--- --.+...|+|..|+...-||.-.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchH
Confidence 45999999999754211 12566778888866655555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.03 Score=67.97 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCcccc--------------------chhcHHHHHHHHHHhhhhcc
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELS--------------------EKDGLIALQKQLLSKTLMEI 185 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs--------------------~~~~~~~~~~~il~~~~~~~ 185 (720)
....+|-|..-.+.+. +....+++.|+|++|.++| ...+...+...++..+-...
T Consensus 12 ~~~~~~~R~rl~~~l~-----~~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 12 RLHNTVVRERLLAKLS-----GANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred CccccCcchHHHHHHh-----cccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 3456776764444442 2346789999999999211 12233444455555531111
Q ss_pred cce---e---------ccchhhHHHHHHHHh--cCCeEEEEecCCcHH---HHHHHhccCCCCCCCCeEEEEcCChhhh-
Q 047161 186 DIE---I---------RNDFDGIKMIKRELR--RRNVLVVIDDAVHIR---QLNRLAGKHSWFGSGSRIIIPTRDEHLL- 247 (720)
Q Consensus 186 ~~~---~---------~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIivTTR~~~v~- 247 (720)
... . .+.......+-..+. +.+++|||||+...+ ..+.+...+....++-++|||||..--.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 000 0 111112222333332 678999999997542 1223333333334667888999984211
Q ss_pred -hhcc-ccceEecC----CCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 248 -RTLR-VDGVYKVE----KLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 248 -~~~~-~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
.... .....++. +++.+|+.++|.......- -.+...++.+.|+|.|+++..++..+.+
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 1111 12244555 8999999999976543221 1234578999999999999988876653
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.05 Score=62.27 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=95.4
Q ss_pred CCCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccc------------------------------hhcHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSE------------------------------KDGLI 171 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~------------------------------~~~~~ 171 (720)
..++.++|||+++++|...|.. +...-.++-|+|+.|.+.+. ..+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 4557899999999999888852 23334677899999981110 01222
Q ss_pred HHHHHHHHhhhhcccceeccchhhHHHHHHHHh---cCCeEEEEecCCcHH--HHHHHhccCCCC-CCCCeEEE--EcCC
Q 047161 172 ALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELR---RRNVLVVIDDAVHIR--QLNRLAGKHSWF-GSGSRIII--PTRD 243 (720)
Q Consensus 172 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrIiv--TTR~ 243 (720)
.+...|..++.+..........+....+.+.+. +...+||||+|+... .=+.|...+.|. ..+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 344444444322221111122223334444432 223589999998542 112222222221 24667655 3432
Q ss_pred --------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHhCCCchHHHHhhhhc
Q 047161 244 --------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG---QPSKDYVELIKRIVKYADGLPFALETLGSVL 308 (720)
Q Consensus 244 --------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~---~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 308 (720)
..|...++.. .+..++.+.++-.+++..+|-.. ..+..++-+++.++...|-.-.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~e-eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFG-RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccc-cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2222333322 35568999999999999887532 2233334444444444444556666554443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0092 Score=55.72 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=16.0
Q ss_pred cEEECCCCCCccccc----cccCCCCCceeecccc
Q 047161 624 KKLNLRRNNFVSLRG----TINHLPKFKHLKLDDC 654 (720)
Q Consensus 624 ~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c 654 (720)
++|.+-+|..+..+. .+..+|+|+.||...-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 344444554443321 2355677777777653
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.041 Score=58.76 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=92.3
Q ss_pred CCCCccccchhHHHHHHhhhcc--C---------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc---
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--S---------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN--- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~--- 191 (720)
..+++.|+++.++++.+.+... . ...+-|.++|..|. +...+.+.+...+ .........
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGt------GKT~lakaia~~l-~~~~~~v~~~~l 192 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGT------GKTLLAKAVAHET-NATFIRVVGSEL 192 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCC------CHHHHHHHHHHhC-CCCEEecchHHH
Confidence 3356899999999998776311 1 22345889999999 3334444444331 111111100
Q ss_pred ----chhhHHHHHHHH----hcCCeEEEEecCCcH-------------H---HHHHHhccCCCC--CCCCeEEEEcCChh
Q 047161 192 ----DFDGIKMIKREL----RRRNVLVVIDDAVHI-------------R---QLNRLAGKHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 192 ----~~~~~~~l~~~l----~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~~--~~gsrIivTTR~~~ 245 (720)
..+....++..+ .....+|++||++.. + .+..+...+... ..+.+||.||....
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 011112233322 235679999998753 1 133333333322 24667888887543
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHhCCCc
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPS--KDYVELIKRIVKYADGLP 298 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~--~~~~~~~~~i~~~c~glP 298 (720)
+.+....+..+++...+.++..++|..++.+.... .++ ..+++.+.|..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 33223456789999999999999999988665222 233 45566676654
|
Many proteins may score above the trusted cutoff because an internal |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0025 Score=61.92 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=51.7
Q ss_pred ccCCCCcEEeccCC--CCCcccCCCCCCCCCCCEEeccCCCCC--cccCcCcCCCCCCCEEeccCcccccCC---ccccC
Q 047161 493 ELLTGLVFLNLNDC--KILVRLPSTINGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVIRQPV---PSIFF 565 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n--~~~~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~~~~L~~L~~L~L~~n~l~~~~---~~~~~ 565 (720)
-.|++|++|.++.| ...+.++....++++|++|++++|.+. .+++ .+..+.+|..|++.+|..+..- ..++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 33667777777777 444555555556677777777777543 1221 2445666777777777655532 23455
Q ss_pred CcCCceEEEeecCCC
Q 047161 566 PSRILKVYLFVDTRD 580 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~ 580 (720)
++++|+.|+-.+...
T Consensus 141 ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDG 155 (260)
T ss_pred HhhhhccccccccCC
Confidence 556777666544433
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=51.04 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=70.2
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhh-ccc--ceeccchh-------hHHHHHHHHhcCCeEEEEecCCcHHHH
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLM-EID--IEIRNDFD-------GIKMIKRELRRRNVLVVIDDAVHIRQL 221 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~-~~~--~~~~~~~~-------~~~~l~~~l~~kr~LlVLDdv~~~~~~ 221 (720)
+++.|.|..|+ +...+.++++.+... ... .+..+... ..+.+.+....++.+|++|+|....+|
T Consensus 3 ~~~~l~G~R~v------GKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~ 76 (128)
T PF13173_consen 3 KIIILTGPRGV------GKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDW 76 (128)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccH
Confidence 57889999998 455566666655330 110 11111111 223344444457888999999998888
Q ss_pred HHHhccCCCCCCCCeEEEEcCChhhhhhc------cccceEecCCCCHHHH
Q 047161 222 NRLAGKHSWFGSGSRIIIPTRDEHLLRTL------RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 222 ~~l~~~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~s 266 (720)
......+-..++..+||+|+.+......- |-...++|.+|+..|-
T Consensus 77 ~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 77 EDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 87777666556678999999988776431 2234789999988763
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0056 Score=70.10 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc------cc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP------SI 563 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~------~~ 563 (720)
..++++|..||+|++. +..+ ..+++|++|++|.+.+=.+ ...+ ..+.+|++|+.||+|.......+- .-
T Consensus 169 c~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 5566777777777766 3444 5566777777776654221 1111 134567777777777654433321 01
Q ss_pred cCCcCCceEEEeecC
Q 047161 564 FFPSRILKVYLFVDT 578 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~ 578 (720)
...+++|+.|+.+++
T Consensus 246 ~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGT 260 (699)
T ss_pred cccCccccEEecCCc
Confidence 112366666666544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.015 Score=54.40 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=44.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc---cccCC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP---SIFFP 566 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~---~~~~~ 566 (720)
+..++.|.+|.+.+|.+...-|.--.-+++|++|.|.+|++. ++- +.+..++.|++|.+-+|.+....- -....
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 455666666666666643333322233456677777666432 221 124456667777776666554332 12233
Q ss_pred cCCceEEEe
Q 047161 567 SRILKVYLF 575 (720)
Q Consensus 567 ~~~L~~L~l 575 (720)
+++|++|++
T Consensus 139 lp~l~~LDF 147 (233)
T KOG1644|consen 139 LPSLRTLDF 147 (233)
T ss_pred cCcceEeeh
Confidence 466666666
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.51 Score=49.24 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee------ccchhhHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI------RNDFDGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~------~~~~~~~~ 197 (720)
++++|-+..++.+...+..+ .-...+-++|..|+ +...+.+.+...+... ...+. ....-..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~------Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGI------GKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCC------CHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHH
Confidence 46788887788888777432 22335578899998 3333334443332211 10111 00111122
Q ss_pred HHHHHH--------hcCCeEEEEecC--CcHHHHHHHhccCCCCCCCCeEEEEcCChhhh-hhccc-cceEecCCCCHHH
Q 047161 198 MIKREL--------RRRNVLVVIDDA--VHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTLRV-DGVYKVEKLDDDE 265 (720)
Q Consensus 198 ~l~~~l--------~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~~~-~~~~~l~~L~~~~ 265 (720)
.+++.. .+++=++|+||+ .+...++.|...+....+++.+|++|.+.+.. ..... ...+++.+++.++
T Consensus 77 ~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 77 DIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156 (313)
T ss_pred HHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHH
Confidence 333322 233334555554 45667999998888777899999888765432 22211 2488999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 266 ALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 266 s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
..+...+.. .... .+....++.+++|.|..+...
T Consensus 157 ~~~~l~~~~-~~~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 157 IEKFISYKY-NDIK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHh-cCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 887775542 2111 233567889999988755433
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.16 Score=50.12 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=83.4
Q ss_pred chhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHH---HHHHHHhcCCeE
Q 047161 134 NSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIK---MIKRELRRRNVL 209 (720)
Q Consensus 134 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~---~l~~~l~~kr~L 209 (720)
+..++.+..++. ...-..|-|+|..|++ ...+.+.+..+..... ..-..+...... .+...+.+ .-+
T Consensus 23 ~~~~~~l~~~~~--~~~~~~lll~G~~G~G------KT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~l 93 (226)
T TIGR03420 23 AELLAALRQLAA--GKGDRFLYLWGESGSG------KSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQ-ADL 93 (226)
T ss_pred HHHHHHHHHHHh--cCCCCeEEEECCCCCC------HHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhccc-CCE
Confidence 334566666653 2345678899999994 4444444444422111 111111111111 22222333 348
Q ss_pred EEEecCCcHH---HH-HHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 210 VVIDDAVHIR---QL-NRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 210 lVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
||+||++... .| +.+...+.. ...+.+||+||+.. .+...+.....+++++++.++-..++.+.+-
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 9999998653 22 333332221 12345889988743 2222333345789999999999998876542
Q ss_pred CCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 276 DGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 276 ~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.....- -.+....+++.+.|.|..+..+
T Consensus 174 ~~~~~~-~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 174 RRGLQL-PDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HcCCCC-CHHHHHHHHHhccCCHHHHHHH
Confidence 221110 1233455666677777665543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0044 Score=60.28 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=87.8
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cC-------CCCCCCCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LP-------STINGWKSLR 523 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp-------~~i~~l~~L~ 523 (720)
.+..+..++||||.. .+ -....+-..|.+-.+|+..++++-. ++. +| ..+-+|+.|+
T Consensus 28 ~~d~~~evdLSGNti-------gt----EA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 28 MMDELVEVDLSGNTI-------GT----EAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred hhcceeEEeccCCcc-------cH----HHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcce
Confidence 467888999999861 10 0111222224445555555555422 221 11 1233456666
Q ss_pred EEeccCCCCCcccCcC----cCCCCCCCEEeccCcccccCCcc--------------ccCCcCCceEEEeecCCCCCCCC
Q 047161 524 TVNLSRCSKLENMPES----LGQMESLEELDVSGTVIRQPVPS--------------IFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~----~~~L~~L~~L~L~~n~l~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
+.+||.|.+....|+. +.+-+.|.+|.+++|.+--.... .... +.|++.....|++...+.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlengs~ 174 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLENGSK 174 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhccCcH
Confidence 6666666555555433 33445566666665543211110 0111 445555555555444332
Q ss_pred Cccc----ccccccccccCCCCcccccCCC--CCCCCCCCcccccEEECCCCCCcccc-----ccccCCCCCceeecccc
Q 047161 586 SSWH----LWFPFSLMQKGSSDSMALMLPS--LSGLCSLTELNLKKLNLRRNNFVSLR-----GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 586 ~~~~----~l~~l~~l~l~~~~~~~~~~~~--l~~l~~L~~L~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L~L~~c 654 (720)
..+. .-..+..+.+..|.+....+.. +-++...+ +|+.|||.+|.|+..- ..+...+.|+.|.+.+|
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~--~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH--SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC--cceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 2211 1122333333344333221111 11211111 3478888999877332 23456677899999988
Q ss_pred c
Q 047161 655 K 655 (720)
Q Consensus 655 ~ 655 (720)
-
T Consensus 253 l 253 (388)
T COG5238 253 L 253 (388)
T ss_pred h
Confidence 3
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0034 Score=61.03 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC--CCCcccCcCcCCCCCCCEEeccCcccccC--CccccCCcC
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQP--VPSIFFPSR 568 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~--~~l~~lp~~~~~L~~L~~L~L~~n~l~~~--~~~~~~~~~ 568 (720)
..+..|++|++.++..+. + ..+-.|++|++|.++.| ...+.++....++++|++|++++|+++-+ ...... +.
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~-l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE-LE 116 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh-hc
Confidence 345667777777766332 2 24557899999999999 66677777777889999999999988741 112222 26
Q ss_pred CceEEEeecCCCCC
Q 047161 569 ILKVYLFVDTRDHR 582 (720)
Q Consensus 569 ~L~~L~l~~~~~~~ 582 (720)
+|..|++.+|.-..
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 67777776665444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0023 Score=62.93 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=44.0
Q ss_pred CCCCCCEEeccCCCCCc--ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecC
Q 047161 518 GWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 578 (720)
..+.++.|||.+|.+.. ++-..+.+||.|+.|+|+.|.+...+...-....+|++|.+.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 46788999999986542 33344678999999999999887665554333478888888443
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.96 Score=48.02 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+.+-++|+||++.. .....|...+.....+..+|++|.+. .+...... -..+.+.+++.++..+.+...... . .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-~-~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-L-P 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-C-C
Confidence 56678999999754 44666666665444567777777665 34333222 247899999999999998875321 1 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
. .. ...++..++|.|..+..+.
T Consensus 218 ~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 D--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred H--HH-HHHHHHHcCCCHHHHHHHh
Confidence 1 11 2578899999998665543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.085 Score=46.74 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=56.4
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRC 530 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~ 530 (720)
.|.++++|+.+.+... ++.++... |..+++|+.+.+.++ +..++ ..+.++++|+.+.+..+
T Consensus 7 ~F~~~~~l~~i~~~~~--------~~~I~~~~--------F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--------IKKIGENA--------FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN 68 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTT--------TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST
T ss_pred HHhCCCCCCEEEECCC--------eeEeChhh--------ccccccccccccccc--ccccceeeeeccccccccccccc
Confidence 3777888888888743 25666554 667778888888764 33333 45667778888888652
Q ss_pred CCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 531 SKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 531 ~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
...++ ..+..+++|+.+++..+ +..+....+.. ..|+.+.+.
T Consensus 69 --~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~-~~l~~i~~~ 111 (129)
T PF13306_consen 69 --LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN-CNLKEINIP 111 (129)
T ss_dssp --T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred --ccccccccccccccccccccCcc-ccEEchhhhcC-CCceEEEEC
Confidence 33333 45667888888888765 66666666666 377777663
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.52 Score=49.29 Aligned_cols=163 Identities=17% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----cceeccc-hhhHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEIRND-FDGIKMIKR 201 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~~~~-~~~~~~l~~ 201 (720)
.++++|-+..++.+..++.. +...-+-++|..|++. ..+...+.+.+.+.. ..+.... ....+.+++
T Consensus 12 l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GK------Ttla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGK------TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCH------HHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 35688988888888777643 3444567999999943 344444444432211 0111111 112233333
Q ss_pred HHh-----------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHH
Q 047161 202 ELR-----------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEA 266 (720)
Q Consensus 202 ~l~-----------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s 266 (720)
.++ ++.-++++|+++.. ...+.+...+......+++|++|... .+...... -..+++++++.++.
T Consensus 84 ~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 84 KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 321 34568999999864 33455555454445677887777543 22221111 13789999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
.+.+.+.+-.....-+ .+....+++.++|-.
T Consensus 164 ~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDl 194 (319)
T PLN03025 164 LGRLMKVVEAEKVPYV-PEGLEAIIFTADGDM 194 (319)
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH
Confidence 8888776643311111 234567778888755
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.39 Score=55.57 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=84.3
Q ss_pred CCccccchhHH---HHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-------cchhhHH
Q 047161 128 DDLVEMNSRLK---KLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-------NDFDGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~---~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-------~~~~~~~ 197 (720)
+++||.+..+. .+...+. .+.+..+-++|.+|++.+. +.+.+... ......... +..+...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTT------LA~aIA~~-~~~~f~~lna~~~~i~dir~~i~ 98 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTT------LARIIANH-TRAHFSSLNAVLAGVKDLRAEVD 98 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHH------HHHHHHHH-hcCcceeehhhhhhhHHHHHHHH
Confidence 56888877664 3444443 3456667899999994443 33333222 111111111 1111112
Q ss_pred HHHHHH--hcCCeEEEEecCC--cHHHHHHHhccCCCCCCCCeEEE--EcCChh--hhhhcc-ccceEecCCCCHHHHHH
Q 047161 198 MIKREL--RRRNVLVVIDDAV--HIRQLNRLAGKHSWFGSGSRIII--PTRDEH--LLRTLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 198 ~l~~~l--~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIiv--TTR~~~--v~~~~~-~~~~~~l~~L~~~~s~~ 268 (720)
...+.+ .+++.++|||||+ +..+++.|..... .|+.++| ||.+.. +..... -...+.+++|+.++...
T Consensus 99 ~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~ 175 (725)
T PRK13341 99 RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQ 175 (725)
T ss_pred HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHH
Confidence 222222 2467799999997 4556777765443 4665555 344431 211111 12478999999999999
Q ss_pred HHHHHhcC------CCCCchHHHHHHHHHHHhCCCc
Q 047161 269 LFNKRAFD------GQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 269 Lf~~~af~------~~~~~~~~~~~~~i~~~c~glP 298 (720)
++.+.+-. .....--.+....+++.+.|.-
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 98875531 1101111334456677777743
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.4 Score=46.94 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
..+++||.+..++.+.+.+..+. -...+-++|..|++. ..+.+.+...+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GK------t~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGK------TSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCH------HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 34678999999999988885321 234567899999833 333333333322110
Q ss_pred ccee---ccc-hhh---HHHHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc
Q 047161 186 DIEI---RND-FDG---IKMIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL 250 (720)
Q Consensus 186 ~~~~---~~~-~~~---~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~ 250 (720)
..+. ... ... ...+.+.+ .+++-++|+|+++.. ...+.+...+........+|++|.+.+ +....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l 164 (355)
T TIGR02397 85 SLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATI 164 (355)
T ss_pred CCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHH
Confidence 0010 000 011 12232322 245558889998654 456677766655556677777765443 33322
Q ss_pred c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 251 R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 251 ~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
. -...++.++++.++..+.+...+-.....-+ .+....+++.++|.|..+...
T Consensus 165 ~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 165 LSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSL 218 (355)
T ss_pred HhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHH
Confidence 1 1247888999999988888776533211111 245667788899988655443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.4 Score=50.37 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh--------------------hccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL--------------------MEID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~--------------------~~~~ 186 (720)
.+++||-+..++.|.+.+..+. --..+-++|..|++.+. +...+.+.+. ....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTT------lAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTT------LSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHH------HHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 3679999999999988885332 12344589999983332 1111111110 0000
Q ss_pred c---eecc-chhhHHHHHHHHh--------cCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc
Q 047161 187 I---EIRN-DFDGIKMIKRELR--------RRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR 251 (720)
Q Consensus 187 ~---~~~~-~~~~~~~l~~~l~--------~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~ 251 (720)
. +++. ....++.+++.+. ++.-++|+|+|+... .++.|...+.......++|+||.+.+ +.....
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0 1100 0122333433332 344578899998653 47888777765556788877777643 332221
Q ss_pred c-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 252 V-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 252 ~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..|+++.++.++..+.+.+.+-...... -.+..+.|++.++|..
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSM 214 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCH
Confidence 1 24789999999999988887654321111 1234566778887754
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.017 Score=33.56 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=14.9
Q ss_pred ccEEECCCCCCccccccccC
Q 047161 623 LKKLNLRRNNFVSLRGTINH 642 (720)
Q Consensus 623 L~~L~Ls~n~l~~lp~~i~~ 642 (720)
|++|+|++|+++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 57788888888888866554
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.02 Score=33.17 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=11.8
Q ss_pred CCcEEeccCCCCCcccCCCCCC
Q 047161 497 GLVFLNLNDCKILVRLPSTING 518 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~ 518 (720)
+|++|+|++|.+ ..+|.+|++
T Consensus 1 ~L~~Ldls~n~l-~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNL-TSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEE-SEEGTTTTT
T ss_pred CccEEECCCCcC-EeCChhhcC
Confidence 356666666653 356665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.4 Score=43.80 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHHHHHHHHh--cCCeEEEEecCCcH---HHHH-HH
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHI---RQLN-RL 224 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~---~~~~-~l 224 (720)
..+.|+|..|. +..++...+..++.... .....+..+....+.+.+. .+--+||+||+... ..|+ .+
T Consensus 42 ~~l~l~G~~G~------GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~l 115 (233)
T PRK08727 42 DWLYLSGPAGT------GKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVAL 115 (233)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHH
Confidence 45899999999 45555555555432221 1111122222333333222 24468999998743 2233 22
Q ss_pred hccCCC-CCCCCeEEEEcCC---------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHH
Q 047161 225 AGKHSW-FGSGSRIIIPTRD---------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVK 292 (720)
Q Consensus 225 ~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~ 292 (720)
...+.. ...|..||+||+. .++...++....+++++++.++-.+++.++|... ..+ .+...-+++
T Consensus 116 f~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~ 192 (233)
T PRK08727 116 FDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLT 192 (233)
T ss_pred HHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence 222111 1346679999984 2333333334588999999999999999877643 222 233455666
Q ss_pred HhCCCc
Q 047161 293 YADGLP 298 (720)
Q Consensus 293 ~c~glP 298 (720)
.+.|-.
T Consensus 193 ~~~rd~ 198 (233)
T PRK08727 193 HGEREL 198 (233)
T ss_pred hCCCCH
Confidence 666543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=46.07 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=45.8
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
|...++|+.+.+..+ ....-...+.++++|+.+.+..+ +..++ ..+.++++|+.+.+.. .+..+....+..+++|
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECCC-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 667778888888753 23333345677778999988774 44444 4577787888888865 5555566666655788
Q ss_pred eEEEe
Q 047161 571 KVYLF 575 (720)
Q Consensus 571 ~~L~l 575 (720)
+.+.+
T Consensus 84 ~~i~~ 88 (129)
T PF13306_consen 84 KNIDI 88 (129)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 87777
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.53 Score=46.41 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=76.8
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecCCc----HHHHHHHhc
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVH----IRQLNRLAG 226 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~----~~~~~~l~~ 226 (720)
-+.+.|||..|.+. .++.+.+... .+.. ..+.......+-..+.+ -+|++||+.. .+.+-.+..
T Consensus 44 ~~~l~l~G~~GsGK------ThLl~~~~~~-~~~~---~i~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf~l~n 111 (226)
T PRK09087 44 SPVVVLAGPVGSGK------THLASIWREK-SDAL---LIHPNEIGSDAANAAAE--GPVLIEDIDAGGFDETGLFHLIN 111 (226)
T ss_pred CCeEEEECCCCCCH------HHHHHHHHHh-cCCE---EecHHHcchHHHHhhhc--CeEEEECCCCCCCCHHHHHHHHH
Confidence 35689999999944 4444444333 1111 11111122222222322 4788899953 233333332
Q ss_pred cCCCCCCCCeEEEEcC---------ChhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhC
Q 047161 227 KHSWFGSGSRIIIPTR---------DEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYAD 295 (720)
Q Consensus 227 ~~~~~~~gsrIivTTR---------~~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~ 295 (720)
... ..|..||+|++ ..++...+....++++++++.++-.+++.+++-.. ..+ +++..-+++.+.
T Consensus 112 ~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~ 186 (226)
T PRK09087 112 SVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRME 186 (226)
T ss_pred HHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhh
Confidence 222 34677999887 34455555556799999999999999999887433 222 344555666666
Q ss_pred CCchHHH
Q 047161 296 GLPFALE 302 (720)
Q Consensus 296 glPLai~ 302 (720)
|-.-++.
T Consensus 187 r~~~~l~ 193 (226)
T PRK09087 187 RSLFAAQ 193 (226)
T ss_pred hhHHHHH
Confidence 6554444
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.2 Score=46.82 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---c-c--eeccc--------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI---D-I--EIRND-------- 192 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~---~-~--~~~~~-------- 192 (720)
.++++|++..++.+..++.. +..+.+-++|..|.+.+ .+.+.+.+.+.... . . +..+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT------~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKT------AAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHH------HHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 36789999999999888753 34445779999999333 22222222211100 0 0 00000
Q ss_pred -----------------hhhHHHHHHHH---------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh
Q 047161 193 -----------------FDGIKMIKREL---------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE 244 (720)
Q Consensus 193 -----------------~~~~~~l~~~l---------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~ 244 (720)
......+++.+ .+.+-+||+||+... +..+.+...+.......++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00112222221 134458999999754 33445555444444567788877543
Q ss_pred -hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 245 -HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 245 -~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
.+..... -...+++.+++.++..+.+.+.+-..... --.+....+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2322221 12467889999999888888765433111 113445677788888664443
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=1 Score=50.05 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=94.7
Q ss_pred CCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--cc---chhhHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RN---DFDGIKM 198 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~---~~~~~~~ 198 (720)
..++++|.+..++.+..++..- ....+.+-|+|..|+ +...+.+.+..++ +...... .+ .+.....
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~------GKTtla~ala~el-~~~~ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGV------GKTSLAHALANDY-GWEVIELNASDQRTADVIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCC------CHHHHHHHHHHHc-CCCEEEEcccccccHHHHHHH
Confidence 3467999999999999988532 122677889999999 4444445555542 2111111 11 1111111
Q ss_pred HHHHH-----h-cCCeEEEEecCCcHH------HHHHHhccCCCCCCCCeEEEEcCChh-hhh-hc-cccceEecCCCCH
Q 047161 199 IKREL-----R-RRNVLVVIDDAVHIR------QLNRLAGKHSWFGSGSRIIIPTRDEH-LLR-TL-RVDGVYKVEKLDD 263 (720)
Q Consensus 199 l~~~l-----~-~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIivTTR~~~-v~~-~~-~~~~~~~l~~L~~ 263 (720)
+.... . .++-+||+|+++... .+..+...+. ..+..||+|+.+.. +.. .. .....+++.+++.
T Consensus 85 i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 85 AGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred HHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 21111 1 267789999998642 2455554444 23445777765432 111 11 1234788999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 264 DEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 264 ~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
++....+.+.+......-+ .+....|++.++|-.-++.
T Consensus 163 ~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 163 RSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 9988888776644311111 2456777888888654443
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.6 Score=45.49 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=94.6
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc----cee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID----IEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~----~~~-----~~~~~~~ 196 (720)
..++++|++..++.+..++.. .....+-|+|..|.+ ...+.+.+..++..... ... .......
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~G------Kt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 86 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTG------KTTAALALARELYGEDWRENFLELNASDERGIDVIR 86 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCC------HHHHHHHHHHHHcCCccccceEEeccccccchHHHH
Confidence 345689999999999888853 334457899999984 33444444444322111 111 0111111
Q ss_pred HHHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc-cccceEecCCCCHHHH
Q 047161 197 KMIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~~s 266 (720)
+.+.+... ..+-++++|+++.. +..+.+...+....+.+++|+++... .+.... .-...+++++++.++.
T Consensus 87 ~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 87 NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 23333322 23558899998743 34556665555555667777776432 222211 1123688999999998
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
.....+.+-.....- -.+....+++.++|.+--
T Consensus 167 ~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 167 AERLRYIAENEGIEI-TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 888887664331110 123456778888887654
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=43.76 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=75.1
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchh---hHHHHHHHHhcCCeEEEEecCCcH---HHHH
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFD---GIKMIKRELRRRNVLVVIDDAVHI---RQLN 222 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~---~~~~l~~~l~~kr~LlVLDdv~~~---~~~~ 222 (720)
..+.+-|+|..|.+ ..++...+...+... ......+.+. ....+.+.+.+ --++++|||... .+|+
T Consensus 44 ~~~~l~l~Gp~G~G------KThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~-~dlliiDdi~~~~~~~~~~ 116 (235)
T PRK08084 44 HSGYIYLWSREGAG------RSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQ-LSLVCIDNIECIAGDELWE 116 (235)
T ss_pred CCCeEEEECCCCCC------HHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhh-CCEEEEeChhhhcCCHHHH
Confidence 34578899999994 445555555442211 0111111111 12233333332 247889999653 3344
Q ss_pred HHh-ccCCC-CCCC-CeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHH
Q 047161 223 RLA-GKHSW-FGSG-SRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIK 288 (720)
Q Consensus 223 ~l~-~~~~~-~~~g-srIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~ 288 (720)
... ..+.. ...| .++|+||+.. .+...+....++++++++.++-.+.+.++|-.. ..+ ++...
T Consensus 117 ~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~ 193 (235)
T PRK08084 117 MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGR 193 (235)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHH
Confidence 222 11111 1134 3789999743 444455555789999999999999988766432 222 23445
Q ss_pred HHHHHhCCCc
Q 047161 289 RIVKYADGLP 298 (720)
Q Consensus 289 ~i~~~c~glP 298 (720)
-+++.+.|-.
T Consensus 194 ~L~~~~~~d~ 203 (235)
T PRK08084 194 FLLKRLDREM 203 (235)
T ss_pred HHHHhhcCCH
Confidence 5666665544
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=51.12 Aligned_cols=111 Identities=14% Similarity=-0.004 Sum_probs=65.6
Q ss_pred hHHHHHHHHhcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEE--EcCChhhhh-hcc-ccceEecCCCCHHHHHH
Q 047161 195 GIKMIKRELRRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIII--PTRDEHLLR-TLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 195 ~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiv--TTR~~~v~~-~~~-~~~~~~l~~L~~~~s~~ 268 (720)
.+..+.+.+++++++++-|+.|..+ .|+.+...+....+...|++ ||++..... ... --..+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 4667778888888888877776543 38888777766666665665 677543211 111 11356789999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 269 LFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 269 Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
++.+.+-.....-. .+....+.+++..-+-|+..++.
T Consensus 361 Il~~~a~~~~v~ls-~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINVHLA-AGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHHCCCcHHHHHHHHHH
Confidence 99886542211000 23334444444433445544443
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.7 Score=46.83 Aligned_cols=160 Identities=16% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccc---
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRND--- 192 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~--- 192 (720)
.++++|+++.++++.+.+.. +-...+-|-++|..|.+ ...+.+.+..+ ...........
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtG------KT~lAkaia~~-~~~~~i~v~~~~l~ 202 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTG------KTLLAKAVAHE-TNATFIRVVGSELV 202 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCC------hHHHHHHHHHH-hCCCEEEeehHHHh
Confidence 35688999999999876531 11234557889999983 33444444443 22111111000
Q ss_pred ----hhhHHHHHHHH----hcCCeEEEEecCCcH-------------HH---HHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 193 ----FDGIKMIKREL----RRRNVLVVIDDAVHI-------------RQ---LNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 193 ----~~~~~~l~~~l----~~kr~LlVLDdv~~~-------------~~---~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
.+....++..+ .....+|++||++.. +. +..+....... ..+-+||.||...+.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 01112233222 245689999999754 11 12222222221 235568888875443
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHhCCC
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDGQ--PSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~--~~~~~~~~~~~i~~~c~gl 297 (720)
... -..+..++++..+.++-.++|..++.+.. ...++. .+++.+.|.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~----~la~~t~g~ 336 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLE----ELAELTEGA 336 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHH----HHHHHcCCC
Confidence 221 13466899999999999999998876542 223443 445555554
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.3 Score=46.39 Aligned_cols=156 Identities=15% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHH------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKR------ 201 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~------ 201 (720)
++++|-+..+.++++ ...+.-+-.||.+|++.+ .+.+-|... .+......+......+.+++
T Consensus 30 ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKT------TlA~liA~~-~~~~f~~~sAv~~gvkdlr~i~e~a~ 97 (436)
T COG2256 30 EHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKT------TLARLIAGT-TNAAFEALSAVTSGVKDLREIIEEAR 97 (436)
T ss_pred HhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHH------HHHHHHHHh-hCCceEEeccccccHHHHHHHHHHHH
Confidence 456777766666653 455666678999999433 333333332 33322222222222232322
Q ss_pred --HHhcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEE--EcCChhhhh--h-ccccceEecCCCCHHHHHHHHHH
Q 047161 202 --ELRRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIII--PTRDEHLLR--T-LRVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 202 --~l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiv--TTR~~~v~~--~-~~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
+..|+|.+|.+|.|.. ..|-+.+.... ..|.-|+| ||-+..-.- . ..-..+|++++|+.+|-.++..+
T Consensus 98 ~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 2347899999999974 44556555444 46777766 666553311 1 11135899999999999999988
Q ss_pred HhcCC--CCC---chH-HHHHHHHHHHhCCCc
Q 047161 273 RAFDG--QPS---KDY-VELIKRIVKYADGLP 298 (720)
Q Consensus 273 ~af~~--~~~---~~~-~~~~~~i~~~c~glP 298 (720)
-+-.. ... ..+ ++.-.-++..+.|--
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 33211 111 111 234455677777743
|
|
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.1 Score=47.85 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred ccCCCCCccccchhHHHHHHhhhccC-CCeEEEEEecCCCcccc-----------------chhcHHHHHHHHHHhhhhc
Q 047161 123 TLGILDDLVEMNSRLKKLRLLLDAES-RDVRMIGICGMGGVELS-----------------EKDGLIALQKQLLSKTLME 184 (720)
Q Consensus 123 ~~~~~~~~vG~~~~~~~i~~~L~~~~-~~~~vi~I~G~gGi~vs-----------------~~~~~~~~~~~il~~~~~~ 184 (720)
.+.+...++||+.+...+...|...+ ...+++.|.|++|.+.| +..+...+...++.+ ++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A-LGV 335 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA-LGV 335 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH-cCC
Confidence 45567899999999999999986333 33568899999999222 223567777777777 443
Q ss_pred ccceeccchhhHHHHHHHH-----h-cCCeEEEEe--cCCcHHH-HHHHhccCCCCCCCCeEEEEcCChhhhhhccc---
Q 047161 185 IDIEIRNDFDGIKMIKREL-----R-RRNVLVVID--DAVHIRQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV--- 252 (720)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~--- 252 (720)
... ....++.+.|.+.+ . |++.+||+- +=.+..- ..+. -.+.+.-.-+.|++---.+.+....-.
T Consensus 336 ~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lpr 412 (550)
T PTZ00202 336 PNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPR 412 (550)
T ss_pred CCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCcc
Confidence 211 12234445555444 2 677777763 1111111 1111 112222345667776555554322211
Q ss_pred cceEecCCCCHHHHHHHHHH
Q 047161 253 DGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 253 ~~~~~l~~L~~~~s~~Lf~~ 272 (720)
-+-|-++..+.++|.+.-.+
T Consensus 413 ldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 413 LDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred ceeEecCCCCHHHHHHHHhh
Confidence 13688999999999876543
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=5 Score=42.81 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
.++++|-+..++.+.+.+..+ .-...+-++|..|++. ..+.+.+...+.... .
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GK------Ttla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGK------TTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCH------HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 367899999999888877532 2234567999999833 333333333321100 0
Q ss_pred ceec--c--chhhHHHHHH---HH-----hcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc
Q 047161 187 IEIR--N--DFDGIKMIKR---EL-----RRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR 251 (720)
Q Consensus 187 ~~~~--~--~~~~~~~l~~---~l-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~ 251 (720)
.+.. + .....+.+++ .+ .+++-++|+|++.... .++.+...+.......++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 0 0012233333 22 2345589999998654 4777777776555667777776543 3333221
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
--..+++++++.++..+...+.+-.....- -.+....+++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 124789999999998888776553321111 1234566888899987543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.27 E-value=3.8 Score=40.61 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhH---HHHHHHHhcCCeEEEEecCCcH---HHHHH-
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGI---KMIKRELRRRNVLVVIDDAVHI---RQLNR- 223 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~---~~l~~~l~~kr~LlVLDdv~~~---~~~~~- 223 (720)
..+.|||..|+ +..++.+.+..++... ...-..+.++.. ..+.+.+++-. ++|+||+... .+|+.
T Consensus 46 ~~l~l~G~~G~------GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~ 118 (234)
T PRK05642 46 SLIYLWGKDGV------GRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYE-LVCLDDLDVIAGKADWEEA 118 (234)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCC-EEEEechhhhcCChHHHHH
Confidence 56789999999 4555555555543221 111111222222 23444454443 5788999633 34433
Q ss_pred HhccCCC-CCCCCeEEEEcCChh---------hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHH
Q 047161 224 LAGKHSW-FGSGSRIIIPTRDEH---------LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIV 291 (720)
Q Consensus 224 l~~~~~~-~~~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~ 291 (720)
+...+.. ...|.+||+||+... +...++...++++++++.++-.+...+++... ..+ ++...-++
T Consensus 119 Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~ 195 (234)
T PRK05642 119 LFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFIL 195 (234)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 3333322 134678888887422 22223334578999999999999988776543 222 24455566
Q ss_pred HHhCCCc
Q 047161 292 KYADGLP 298 (720)
Q Consensus 292 ~~c~glP 298 (720)
+.+.|-.
T Consensus 196 ~~~~~d~ 202 (234)
T PRK05642 196 TRGTRSM 202 (234)
T ss_pred HhcCCCH
Confidence 6665544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.86 Score=40.82 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred cccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-c-ee-----ccchhhHH------
Q 047161 131 VEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-I-EI-----RNDFDGIK------ 197 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~-~~-----~~~~~~~~------ 197 (720)
+|++..+..+...+.. ..-+.+.|+|..|++ ...+.+.+...+..... . .. ........
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~G------KT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 72 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTG------KTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL 72 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCC------HHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhh
Confidence 4677788888877743 244578899999994 44455555555311100 0 00 00000010
Q ss_pred ---HHHHHHhcCCeEEEEecCCcH-----HHHHHHhccCCCC---CCCCeEEEEcCChh
Q 047161 198 ---MIKRELRRRNVLVVIDDAVHI-----RQLNRLAGKHSWF---GSGSRIIIPTRDEH 245 (720)
Q Consensus 198 ---~l~~~l~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIivTTR~~~ 245 (720)
........+..++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011222457789999999853 2233333333222 36778888887654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.7 Score=40.21 Aligned_cols=120 Identities=19% Similarity=0.280 Sum_probs=65.6
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-ccee--ccchhh------------HHHHHHHHhcCCeEEEEec
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEI--RNDFDG------------IKMIKRELRRRNVLVVIDD 214 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~--~~~~~~------------~~~l~~~l~~kr~LlVLDd 214 (720)
....+-|+|..|. |..++.+.+...+.... ...+ .+.++. ...+++.+++-. +|++||
T Consensus 33 ~~~~l~l~G~~G~------GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~D-lL~iDD 105 (219)
T PF00308_consen 33 RYNPLFLYGPSGL------GKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSAD-LLIIDD 105 (219)
T ss_dssp SSSEEEEEESTTS------SHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSS-EEEEET
T ss_pred CCCceEEECCCCC------CHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCC-EEEEec
Confidence 3455789999999 55566666666543321 1111 111121 234455556444 678899
Q ss_pred CCcH---HHHHH-HhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcC
Q 047161 215 AVHI---RQLNR-LAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 215 v~~~---~~~~~-l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
|... ..|+. +...+.. ...|.+||+|++.. ++...+...-++++++++.++-.+++.++|-.
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 9753 22322 2222211 13577899999543 22333344458999999999999999888753
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.1 Score=46.93 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--cc--chhhHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RN--DFDGIKMIK 200 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~--~~~~~~~l~ 200 (720)
...++++|.+...+.+..++..+ .-..++-++|..|++. ..+.+.+..++ +...... .+ .+...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GK------T~la~~l~~~~-~~~~~~i~~~~~~~~~i~~~l~ 89 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGK------TTVAKALCNEV-GAEVLFVNGSDCRIDFVRNRLT 89 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCH------HHHHHHHHHHh-CccceEeccCcccHHHHHHHHH
Confidence 34477999999999999888532 2345677799999943 33444444432 1111111 11 111112222
Q ss_pred HHH-----hcCCeEEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-cccceEecCCCCHHHHHHHH
Q 047161 201 REL-----RRRNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL-RVDGVYKVEKLDDDEALELF 270 (720)
Q Consensus 201 ~~l-----~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~~s~~Lf 270 (720)
+.. .+.+-++|+||++.. +..+.+...+.....+.++|+||...... ... .--..+.++..+.++..+++
T Consensus 90 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 90 RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMM 169 (316)
T ss_pred HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHH
Confidence 222 134557889999755 22344444344445678899998754321 111 11135677777777777665
Q ss_pred HH
Q 047161 271 NK 272 (720)
Q Consensus 271 ~~ 272 (720)
..
T Consensus 170 ~~ 171 (316)
T PHA02544 170 KQ 171 (316)
T ss_pred HH
Confidence 43
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.4 Score=47.10 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=95.6
Q ss_pred CCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc-------------------ccc
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME-------------------IDI 187 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-------------------~~~ 187 (720)
+++||-+..++.+...+.. +.+ ..+-++|..|++.+. +.+.+...+... ...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTT------lA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTT------TARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHH------HHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5689988888888877753 233 345799999994332 222222221100 000
Q ss_pred ee---c-cchhhH---HHHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-Chhhhhhccc
Q 047161 188 EI---R-NDFDGI---KMIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-DEHLLRTLRV 252 (720)
Q Consensus 188 ~~---~-~~~~~~---~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~~~~ 252 (720)
+. . ...... +.+++.+ .+++-++|+|+++.. ..++.|...+........+|++|. ...+...+..
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0 001122 2233333 246668999999854 457788777765555666665554 3444333222
Q ss_pred -cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 253 -DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 253 -~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
...|++.+++.++..+.+.+.+-.....- -.+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 24799999999999999988765431111 1244567888899987544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.056 Score=50.67 Aligned_cols=81 Identities=16% Similarity=0.352 Sum_probs=60.9
Q ss_pred cccEEECCCCCCcccc-ccccCCCCCceeecccccc-----ccccCCcccccceEeeecCcccccch-hhccCchhHhhh
Q 047161 622 NLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKR-----LRSLSELPSDIKKVRVHGCTSLATIS-DALRSCNSATSR 694 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~-----L~~lp~lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l 694 (720)
.++.++-++..+...- ..+.++++++.|.+.+|.. |+.+..+.++|+.|++++|+.+++-. .++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~- 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR- 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH-
Confidence 4577887777665332 3567888999999999985 45566677899999999999998876 67788888888
Q ss_pred hhhcccchh
Q 047161 695 IFCINCPKL 703 (720)
Q Consensus 695 ~~~~nc~~l 703 (720)
+..++.|..
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 444566655
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.0038 Score=60.90 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+.+.+.|+..||. |..+.- ...++.|++|.||-|++ ..+ ..+..+++|+.|.|+.|.+ ..
T Consensus 18 l~~vkKLNcwg~~-------L~DIsi----------c~kMp~lEVLsLSvNkI-ssL-~pl~rCtrLkElYLRkN~I-~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-------LDDISI----------CEKMPLLEVLSLSVNKI-SSL-APLQRCTRLKELYLRKNCI-ES 77 (388)
T ss_pred HHHhhhhcccCCC-------ccHHHH----------HHhcccceeEEeecccc-ccc-hhHHHHHHHHHHHHHhccc-cc
Confidence 4456667777765 333322 55677788888887773 343 3356777788888877643 22
Q ss_pred cCc--CcCCCCCCCEEeccCcccccCCcc-----ccCCcCCceEEE
Q 047161 536 MPE--SLGQMESLEELDVSGTVIRQPVPS-----IFFPSRILKVYL 574 (720)
Q Consensus 536 lp~--~~~~L~~L~~L~L~~n~l~~~~~~-----~~~~~~~L~~L~ 574 (720)
+.+ -+.++++|+.|-|..|.-.+..+. ....+++|+.|+
T Consensus 78 ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 322 255777778887777765554332 222346666665
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.68 E-value=4.7 Score=43.33 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=60.7
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++++|+++.. .....|...+....++..+|++|.+. .+...... -..+.+++++.++..+.+..... . +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C-C
Confidence 34457888999864 34566666665555677777666654 44433321 24889999999999988874321 1 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHh
Q 047161 281 KDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.+.+..++..++|.|.....+
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 244667899999999755444
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=92.56 E-value=3.3 Score=39.47 Aligned_cols=89 Identities=25% Similarity=0.265 Sum_probs=60.9
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+.+-++|+||+... +.++.|...+....+.+.+|++|++. .+..... -...+++.+++.++..+.+.++ + ..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g-i~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G-IS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C-CC
Confidence 45668899998754 44777777776655677777777653 3332221 1248999999999988888776 1 11
Q ss_pred chHHHHHHHHHHHhCCCchH
Q 047161 281 KDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLa 300 (720)
.+....+++.++|.|..
T Consensus 171 ---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 ---EEAAELLLALAGGSPGA 187 (188)
T ss_pred ---HHHHHHHHHHcCCCccc
Confidence 34577889999998753
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=9.2 Score=43.49 Aligned_cols=167 Identities=18% Similarity=0.130 Sum_probs=96.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
.+++||.+..++.+..++..+ .-...+-++|..|++.+ .+.+.+.+.+.. ...
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKT------TlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKT------TIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHH------HHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 367999999989998888532 22356678999999433 222222222111 000
Q ss_pred cee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-
Q 047161 187 IEI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL- 250 (720)
Q Consensus 187 ~~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~- 250 (720)
.+. . ......+.+|+.+ .+++-++|+|+|... ...+.|...+.....+.++|++|.+.. +....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 111 0 0012333344333 256668899999864 456777766665556677887776542 32111
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.--..+++++++.++..+.+.+.+-+.....+ .+....|++.++|-+-.+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 11247899999999988888776543321111 233466788888866433
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.037 Score=54.06 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=107.9
Q ss_pred hccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccCCCCCcc----cCc-------CcCCCCCCCEEeccCccc
Q 047161 492 IELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSRCSKLEN----MPE-------SLGQMESLEELDVSGTVI 556 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~~~~l~~----lp~-------~~~~L~~L~~L~L~~n~l 556 (720)
+..+..+..++||+|.+... +...|.+-.+|+..+++.- +++. +|+ .+-+||.|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 45588899999999986543 3344556788999888863 4442 232 456899999999999987
Q ss_pred ccC-Ccc---ccCCcCCceEEEeecCCCCCCCCCccc-------------ccccccccccCCCCcccccCCCCC-CCCCC
Q 047161 557 RQP-VPS---IFFPSRILKVYLFVDTRDHRTSSSSWH-------------LWFPFSLMQKGSSDSMALMLPSLS-GLCSL 618 (720)
Q Consensus 557 ~~~-~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~l~~l~~l~l~~~~~~~~~~~~l~-~l~~L 618 (720)
..- |+. .....+.|.+|.+.+|+...+....+. .-++|+......|........... .+.+=
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 643 322 223348999999998887766444332 112333333333322221111000 00000
Q ss_pred CcccccEEECCCCCCcc--cc----ccccCCCCCceeeccccccc--------cccCCcccccceEeeecCc
Q 047161 619 TELNLKKLNLRRNNFVS--LR----GTINHLPKFKHLKLDDCKRL--------RSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~--lp----~~i~~l~~L~~L~L~~c~~L--------~~lp~lp~~L~~L~l~~c~ 676 (720)
=+|+.+.+..|.+.. +. -.+..+.+|+.|+|.+|..- ..+|.+|. |+.|.+.+|-
T Consensus 185 --~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~-lrEL~lnDCl 253 (388)
T COG5238 185 --ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL-LRELRLNDCL 253 (388)
T ss_pred --cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-hhhccccchh
Confidence 034777788887751 11 12356789999999998521 11244444 8888888884
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.4 Score=48.38 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=92.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
.+++||.+..++.|.+.+..+ .--..+-++|..|++.+. +.+.+.+.+.. ...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTT------lAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTT------IARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHH------HHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 367999999999999888532 123456789999994332 22222222110 000
Q ss_pred ce---ec-cchhhHHHHHHHH--------hcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc-
Q 047161 187 IE---IR-NDFDGIKMIKREL--------RRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL- 250 (720)
Q Consensus 187 ~~---~~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~- 250 (720)
.+ .. .....++.+++.+ .+++-++|+|++.... ..+.|...+.......++|++|.+. ++....
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 10 1112333444433 2566789999998643 3555665554444566777766543 332221
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
+--..|+++.++.++..+.+.+.+-.....- -.+....|++.++|-+.-+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHH
Confidence 1113678889999998888776553321111 1234567888888877433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.01 Score=66.16 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=23.3
Q ss_pred cceEeeecCcccccchhhcc--CchhHhhhhhhcccchhHHHHHh
Q 047161 667 IKKVRVHGCTSLATISDALR--SCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 667 L~~L~l~~c~~L~~lp~~~~--~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
++.|.+..|.....---... .+.++.. ....+|+.....+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKD-LDLSGCRVITLKSLE 446 (482)
T ss_pred cceEecccCccccccchHHHhhhhhcccc-CCccCcccccchhhh
Confidence 78888888875543321111 1555555 334467777655543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=92.26 E-value=3 Score=41.12 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred ccccchhH-HHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHHHHHHHHhcCC
Q 047161 130 LVEMNSRL-KKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIKMIKRELRRRN 207 (720)
Q Consensus 130 ~vG~~~~~-~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~l~~kr 207 (720)
+.|..... ..+.++.. +....+.+.|+|..|+ +..++...+..+..... .....+.......+ .. ....
T Consensus 21 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~------GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~-~~~~ 91 (227)
T PRK08903 21 VAGENAELVARLRELAA-GPVADRFFYLWGEAGS------GRSHLLQALVADASYGGRNARYLDAASPLLAF-DF-DPEA 91 (227)
T ss_pred ccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCC------CHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hh-cccC
Confidence 34554444 33333332 2234456789999999 55556665655532211 11111211221111 11 2234
Q ss_pred eEEEEecCCcHH--HHHHHhccCCCC-CCCCe-EEEEcCChhhhh--------hccccceEecCCCCHHHHHHHHHHHhc
Q 047161 208 VLVVIDDAVHIR--QLNRLAGKHSWF-GSGSR-IIIPTRDEHLLR--------TLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 208 ~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsr-IivTTR~~~v~~--------~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
-++|+||+.... +-+.+...+... ..|.. ||+|++...... .+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 478899997532 222333333211 23443 666666432211 222235789999998876666655332
Q ss_pred CC--CCCchHHHHHHHHHHHhCCCchHHHHhhhh
Q 047161 276 DG--QPSKDYVELIKRIVKYADGLPFALETLGSV 307 (720)
Q Consensus 276 ~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 307 (720)
.. ..+ ++....+++.+.|.+..++.+-..
T Consensus 172 ~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 172 ERGLQLA---DEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 11 111 234555666777777766554433
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.7 Score=47.48 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=96.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------------------- 184 (720)
.+++||-+..++.|.+.+..+. --..+-++|..|++.+ .+-+.+.+.+...
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKT------TLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKT------TLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHH------HHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 3679999988888888885321 1234567999998322 2222222221110
Q ss_pred ---c---cceecc-chhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhh
Q 047161 185 ---I---DIEIRN-DFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHL 246 (720)
Q Consensus 185 ---~---~~~~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v 246 (720)
. ...++. ....++.+++.+ .++.-++|+|+|+.. ..++.|...+..-....++|+ ||...++
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 0 001100 012233333332 345668999999864 457888877765555666554 5555555
Q ss_pred hhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 247 LRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 247 ~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
...... -..|.++.++.++..+.+.+.+-......+ .+..+.|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 443322 247899999999998888766533211111 23346788999998864443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.0091 Score=58.35 Aligned_cols=79 Identities=27% Similarity=0.255 Sum_probs=50.7
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~ 531 (720)
.+++.|++|.|+-|+ +..|.+ +..+++|+.|+|..|. +..+.+ .+.++++|++|.|..|.
T Consensus 38 ~kMp~lEVLsLSvNk-------IssL~p----------l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-------ISSLAP----------LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcccceeEEeeccc-------cccchh----------HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCC
Confidence 467788888888776 445544 6667777778887776 333322 24567777888777776
Q ss_pred CCcccCc-----CcCCCCCCCEEe
Q 047161 532 KLENMPE-----SLGQMESLEELD 550 (720)
Q Consensus 532 ~l~~lp~-----~~~~L~~L~~L~ 550 (720)
-.+.-+. .+.-|++|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 6555443 244566777664
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.2 Score=52.33 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCccc--------chhhhhhhcccCcccccccchHHHHHHHHHH
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAY--------STWCLDELAKIPTVVRKQTRSFHEAFAKHEE 72 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~--------s~wcl~el~~ip~~vr~~~~~~~~~~~~~~~ 72 (720)
|.++|+|-++|..|.. .+.+++-|+.+|-+|.|+++|--. -.|.-.|++..-++-++.---|..||.--+.
T Consensus 639 GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~KNIiPI~D~aFE~Pt~ 717 (832)
T KOG3678|consen 639 GYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIFDTAFEFPTK 717 (832)
T ss_pred CceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcCCeeeeecccccCCCc
Confidence 7899999889999875 669999999999999999997533 2576777766544444444444555432211
Q ss_pred HhhhChHHHHHHHHHHHHhccCCcccccChhHHHHHHHHHHhhhhccCCCcc
Q 047161 73 AFRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVKEISRKKGPRTL 124 (720)
Q Consensus 73 ~~~~~~~~v~~w~~~l~~~~~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~ 124 (720)
. + .--+.+..+..+.|......+.-.-+.++|.-+...++.+++
T Consensus 718 e-----d---~iPnDirmi~kyNGvKWvHdYQdA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 718 E-----D---QIPNDIRMITKYNGVKWVHDYQDACMAKVVRFITGELNRTTP 761 (832)
T ss_pred h-----h---cCcHHHHHHHhccCeeeehhhHHHHHHHHHHHHhccccCCCC
Confidence 1 1 111234444555665444455555677888877777765543
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.6 Score=45.65 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=96.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------------------- 184 (720)
..++||-+.-+..+...+..+ .-..-+-++|..|++.+. +.+-+.+.+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT------~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTT------SARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHH------HHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 367899888888887766432 122456689999983332 222222221100
Q ss_pred --cccee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhh
Q 047161 185 --IDIEI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLL 247 (720)
Q Consensus 185 --~~~~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~ 247 (720)
...+. + ......+.+++.+ .+++-++|+|+++.. ..++.|...+....+..++| +||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 0 0112333344332 356778999999864 55888887776555566655 455655665
Q ss_pred hhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 248 RTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 248 ~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
..... ...+++++++.++..+.+.+.+-.....-+ .+....|++.++|.+--
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARD 225 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 44322 247899999999999999887754321111 23345688888887643
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.79 E-value=8.5 Score=41.76 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=90.3
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cce--eccchhh------------HHHHHHHHhcCCeEEEEecC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIE--IRNDFDG------------IKMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~--~~~~~~~------------~~~l~~~l~~kr~LlVLDdv 215 (720)
...+-|+|..|. |..++.+.+...+.... ... ..+..+. ...+++.+++ .=+|||||+
T Consensus 136 ~n~l~l~G~~G~------GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi 208 (405)
T TIGR00362 136 YNPLFIYGGVGL------GKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS-VDLLLIDDI 208 (405)
T ss_pred CCeEEEECCCCC------cHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh-CCEEEEehh
Confidence 345789999999 44455555555432211 011 1111111 1123333433 337889999
Q ss_pred CcHH---HH-HHHhccCCCC-CCCCeEEEEcCC-hh--------hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CC
Q 047161 216 VHIR---QL-NRLAGKHSWF-GSGSRIIIPTRD-EH--------LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QP 279 (720)
Q Consensus 216 ~~~~---~~-~~l~~~~~~~-~~gsrIivTTR~-~~--------v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~ 279 (720)
.... .+ +.+...+... ..|..||+||.. .. +...+....++++++.+.++-.+++.+.+-.. ..
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l 288 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL 288 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7431 11 2222222111 235568887763 11 22223333478999999999999999887543 22
Q ss_pred CchHHHHHHHHHHHhCCCchH----HHHhhhh--ccC--CCHHHHHHHHhhhh-----cCCchhHHHHHH
Q 047161 280 SKDYVELIKRIVKYADGLPFA----LETLGSV--LFG--RSVDGWRSTLERLN-----KHSADEILDVLE 336 (720)
Q Consensus 280 ~~~~~~~~~~i~~~c~glPLa----i~~~g~~--l~~--k~~~~W~~~l~~l~-----~~~~~~il~~L~ 336 (720)
+ +++...+++.+.|..-. +..+... +.+ -+.+..+.++...- ....+.|.++..
T Consensus 289 ~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va 355 (405)
T TIGR00362 289 P---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKEITIENIQEVVA 355 (405)
T ss_pred C---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 2 34556667777775543 2222211 122 26667777776431 123355666555
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=6.2 Score=44.52 Aligned_cols=120 Identities=11% Similarity=0.142 Sum_probs=66.9
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---ccceeccchhhHHHHHHHHhcC-----------CeEEEEecCCc
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLME---IDIEIRNDFDGIKMIKRELRRR-----------NVLVVIDDAVH 217 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---~~~~~~~~~~~~~~l~~~l~~k-----------r~LlVLDdv~~ 217 (720)
..+-|+|-.|. +..++...|...+... ...--.+..+....+...++.+ -=+|||||+..
T Consensus 315 NpL~LyG~sGs------GKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 315 NPLFIYGESGL------GKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQF 388 (617)
T ss_pred CcEEEECCCCC------CHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhcc
Confidence 34789999998 5556666666653321 1111122222222222222221 23788999964
Q ss_pred H---HHHH-HHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC
Q 047161 218 I---RQLN-RLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG 277 (720)
Q Consensus 218 ~---~~~~-~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 277 (720)
. +.|+ .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-..++.+++-..
T Consensus 389 l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 3 2222 22222211 13466788888752 233334445689999999999999999887544
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.16 E-value=4 Score=43.11 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=62.2
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|+++.. ...+.|...+........+|+ |++-..+...... -..+++.+++.++..+.+.+.+....
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--
Confidence 56678999999854 345666665554334555444 4444444433221 24899999999999999987432111
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
--.+....+++.++|.|.....+.
T Consensus 218 -~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 -SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113345678999999998665443
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=11 Score=40.39 Aligned_cols=165 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc------c--ccee---cc-chh
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME------I--DIEI---RN-DFD 194 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~------~--~~~~---~~-~~~ 194 (720)
.++++|.+..++.+.+.+..+ .-...+-++|..|++.+ .+.+.+...+... . .... .. ...
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt------~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKT------TCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 367899999999888888532 22346779999998444 3333333332110 0 0000 00 001
Q ss_pred hHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc-ccceEecCCCC
Q 047161 195 GIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR-VDGVYKVEKLD 262 (720)
Q Consensus 195 ~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~~~l~~L~ 262 (720)
..+.+++.+ .+++-++++|++... ..++.+...+........+|++| +...+..... -...++.++++
T Consensus 89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~ 168 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT 168 (367)
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCcc
Confidence 112232222 245567999998753 34666665554333455655555 4334332221 12478999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 263 DDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.++....+...+-.....- -.+....+++.++|-+-
T Consensus 169 ~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 169 IKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHH
Confidence 9998888887665431100 12445667777887554
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.4 Score=40.89 Aligned_cols=90 Identities=20% Similarity=0.461 Sum_probs=52.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHHHHh
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKRELR 204 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~~l~ 204 (720)
.-.++||-++.++++.-.- .+.++.-+-|.||+|++.+. .+..+.+.++..-..+.-.+. .+.+.+++.+|++++
T Consensus 25 ~l~dIVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTT--si~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTT--SILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred HHHHhhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhh--HHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 3457899998888876554 45678888899999995443 233344444432111111111 123345565655553
Q ss_pred -----------cCCeEEEEecCCcHH
Q 047161 205 -----------RRNVLVVIDDAVHIR 219 (720)
Q Consensus 205 -----------~kr~LlVLDdv~~~~ 219 (720)
++-=.|+||..++..
T Consensus 101 ~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 101 MFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHhhccCCCCceeEEEeeccchhh
Confidence 334468899998753
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=13 Score=40.93 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeEEEEecCCcH---HH-HHHHhccCCC-CCCCCeEEEEcCC---------hhhhhhccccceEecCCCCHHHHHHHHHH
Q 047161 207 NVLVVIDDAVHI---RQ-LNRLAGKHSW-FGSGSRIIIPTRD---------EHLLRTLRVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 207 r~LlVLDdv~~~---~~-~~~l~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
.-+||+||+... +. .+.+...+.. ...|..||+|+.. +.+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 458889999643 22 2333333321 1345578888653 23333334445788999999999999998
Q ss_pred HhcCCCC-CchHHHHHHHHHHHhCCCchHHHH
Q 047161 273 RAFDGQP-SKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 273 ~af~~~~-~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
++-.... ..--++...-|++.++|.|-.+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 8743211 112245677788999998865543
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=8.6 Score=42.44 Aligned_cols=171 Identities=19% Similarity=0.164 Sum_probs=92.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+.-+..+...+.. +.+ ..+-++|..|++.+ .+.+-+...+... .
T Consensus 13 ~~divGq~~i~~~L~~~i~~--~~l~~~~Lf~GPpGtGKT------TlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKK--NSISHAYIFAGPRGTGKT------TVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHH------HHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 36799988777777766642 334 45678999999433 2223333221110 0
Q ss_pred ---cceecc-chhhHHH---HHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhc
Q 047161 186 ---DIEIRN-DFDGIKM---IKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTL 250 (720)
Q Consensus 186 ---~~~~~~-~~~~~~~---l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~ 250 (720)
-..... .....+. +.+.. .+++-++|+|+++.. .+.+.+...+........+|+ ||....+....
T Consensus 85 ~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 85 FMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 001111 1122222 33332 245668999999754 346666666654334445444 44334443332
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCC-CchHHHHhhh
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADG-LPFALETLGS 306 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~ 306 (720)
.. -..+++++++.++....+.+.+-.....- -.+....++++++| ++.|+..+..
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 24789999999998888887664321111 12345567777765 4566655544
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=4 Score=47.84 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=95.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhccc-------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEID------------------- 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~------------------- 186 (720)
..++||-+..++.+.+.+.. +.+. .+-++|..|++. ..+.+.+.+.+.....
T Consensus 15 FddIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGK------TTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGK------TSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCH------HHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC
Confidence 36789999988888887743 3343 346899999833 3333333333211100
Q ss_pred ----ceeccc-hhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 187 ----IEIRND-FDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 187 ----~~~~~~-~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
...... ...++.+| +.+ .+++-++|+|++... +.++.|...+.......++|++|.+ ..+....
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 000000 11222222 222 367779999999854 5577877777655566776665554 4444332
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
-. -..|++++|+.++..+.+.+.+-..... --.+....|++.++|.|--
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRD 216 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 21 2489999999999998887654322111 1124456788889997743
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=90.47 E-value=6.9 Score=39.51 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=41.3
Q ss_pred CeEEEEecCCc----------HHHHHHHhccCCCCCCCCeEEEEcCChhh----------hhhccccceEecCCCCHHHH
Q 047161 207 NVLVVIDDAVH----------IRQLNRLAGKHSWFGSGSRIIIPTRDEHL----------LRTLRVDGVYKVEKLDDDEA 266 (720)
Q Consensus 207 r~LlVLDdv~~----------~~~~~~l~~~~~~~~~gsrIivTTR~~~v----------~~~~~~~~~~~l~~L~~~~s 266 (720)
.-+|++|++.. .+..+.+..........-.+|+++..... ... ....++++.++.+|-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHH
Confidence 35888999975 23455565555433333355566543322 122 234678899999999
Q ss_pred HHHHHHHhc
Q 047161 267 LELFNKRAF 275 (720)
Q Consensus 267 ~~Lf~~~af 275 (720)
.+++.+.+-
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999887664
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=5.7 Score=42.77 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec----
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR---- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~---- 190 (720)
...++.|.+..+++|.+.+.. +-...+-|-++|..|.+ ...+.+.+... .........
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTG------KT~LAkalA~~-l~~~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTG------KTMLAKAVAHH-TTATFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCC------HHHHHHHHHHh-cCCCEEEEehHHH
Confidence 335689999999988776531 11234567899999983 33333333333 111111110
Q ss_pred ---cchhhHHHHHHH----HhcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChh
Q 047161 191 ---NDFDGIKMIKRE----LRRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 191 ---~~~~~~~~l~~~----l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~ 245 (720)
...+....+++. ......+|++|+++... .+..+...+... ..+-.||.||...+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 001111222222 24577899999976420 122333333322 23556888887554
Q ss_pred hhhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 246 LLRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 246 v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.... -..+..+++...+.++..++|..+.-+. ....++. ++++...|+-
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 4322 2456788999999999888888665433 2233444 3445555543
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.23 E-value=3.8 Score=44.21 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=71.3
Q ss_pred EEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-ccchhhHHHHHHHHh---cCCeEEEEecCCcHHHHHHH
Q 047161 153 MIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-RNDFDGIKMIKRELR---RRNVLVVIDDAVHIRQLNRL 224 (720)
Q Consensus 153 vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-~~~~~~~~~l~~~l~---~kr~LlVLDdv~~~~~~~~l 224 (720)
++.|.|+-++ +...+.+.+....... ...+. .+..++.+.++.... .++..|+||.|.....|+..
T Consensus 39 i~~i~GpR~~------GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~ 112 (398)
T COG1373 39 IILILGPRQV------GKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERA 112 (398)
T ss_pred EEEEECCccc------cHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHH
Confidence 8999999988 4444445555553222 00111 111222232333222 26689999999999999988
Q ss_pred hccCCCCCCCCeEEEEcCChhhhhhc------cccceEecCCCCHHHHHHHH
Q 047161 225 AGKHSWFGSGSRIIIPTRDEHLLRTL------RVDGVYKVEKLDDDEALELF 270 (720)
Q Consensus 225 ~~~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~s~~Lf 270 (720)
...+-+.++. +|++|+-+..+...- |-...+++-||+..|-..+-
T Consensus 113 lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 113 LKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8887777776 899999877664432 33457899999999987653
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.19 E-value=4.6 Score=43.18 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCc----------------c-----ccch----hcHHHHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGV----------------E-----LSEK----DGLIALQKQL 177 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi----------------~-----vs~~----~~~~~~~~~i 177 (720)
..+..++||+.++..+.+++.. +.+.-+-+-|.|-.|. . |+-. .....+.+.|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3456799999999999998852 3344445556666665 0 1111 2344667777
Q ss_pred HHhhhhcccceeccchhhHHHHHHHHhcCC--eEEEEecCCcHHH--HHHHhccCCCC-CCCCeEEEEcCChhh--hh--
Q 047161 178 LSKTLMEIDIEIRNDFDGIKMIKRELRRRN--VLVVIDDAVHIRQ--LNRLAGKHSWF-GSGSRIIIPTRDEHL--LR-- 248 (720)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr--~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIivTTR~~~v--~~-- 248 (720)
+..+........ ...+.++++.+..++.+ +++|||.++.... -+.|...|.|- -++||+|+.---..+ .+
T Consensus 227 ~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 777533322221 11344556666665544 8999998875432 12233333333 357887765422111 11
Q ss_pred --hcc-----ccceEecCCCCHHHHHHHHHHHhcC
Q 047161 249 --TLR-----VDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 249 --~~~-----~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
... .......++-+.++-.+++..+.-.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 111 1235666777888888888877643
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=14 Score=39.98 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=94.0
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
.++++|-+.-++.+...+.. +.+. .+-++|..|++.+ .+...+.+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKt------t~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKT------TAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHH------HHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 36789988888888887743 3443 3678999999333 22222222221100
Q ss_pred --------cce---ecc-chhhHHHH---HHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-C
Q 047161 186 --------DIE---IRN-DFDGIKMI---KREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-R 242 (720)
Q Consensus 186 --------~~~---~~~-~~~~~~~l---~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R 242 (720)
..+ ... .....+.+ .+.+ .+++-++|+|++... ..++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 000 000 11112333 3333 245568899998754 45777877776555677766655 4
Q ss_pred Chhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 243 DEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 243 ~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
-..+...... ...+++++++.++..+.+...+-.... .--.+....+++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 4555433221 237889999999888777665422110 011344677888999977433
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=3.7 Score=44.65 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=80.7
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc-----
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN----- 191 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~----- 191 (720)
.++.|++..+++|.+.+.. +-...+-|.++|..|.+ ...+.+.+...+ .........
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTG------KT~LAraIA~el-~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTG------KTLLAKAVANET-SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCC------HHHHHHHHHHhh-CCCEEEEecchhhh
Confidence 5688999999998776631 11233457799999983 333344443331 111111100
Q ss_pred --chhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChhhh
Q 047161 192 --DFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHLL 247 (720)
Q Consensus 192 --~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v~ 247 (720)
..+....++..+ .+...+|++|+++... .+-.+...+..+ ..+-+||+||...+..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 001122233222 3577889999976321 012222222221 2356788888765544
Q ss_pred hh-----ccccceEecCCCCHHHHHHHHHHHhcCC
Q 047161 248 RT-----LRVDGVYKVEKLDDDEALELFNKRAFDG 277 (720)
Q Consensus 248 ~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 277 (720)
.. -..+..+++...+.++..++|..++-+.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 33 1346789999999999999999877544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.21 Score=26.86 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=4.2
Q ss_pred CCCEEeccCCC
Q 047161 521 SLRTVNLSRCS 531 (720)
Q Consensus 521 ~L~~L~L~~~~ 531 (720)
+|++|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
|
... |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.54 E-value=14 Score=41.63 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
..++||.+..++.+.+.+..+ .-...+-++|+.|++.+ .+...+...+.... .
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKT------TlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKT------SIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 467899999998888877432 22345678999999322 22222222211100 0
Q ss_pred ce---ecc-chhhHHHHHHHH--------hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc
Q 047161 187 IE---IRN-DFDGIKMIKREL--------RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR 251 (720)
Q Consensus 187 ~~---~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~ 251 (720)
.+ ... .....+.+++.. .+++=++|+|+++. ...++.|...+........+|++| .-..+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00 100 012223333222 23444699999875 345777777665444566666555 4444433221
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHhh
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETLG 305 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 305 (720)
-...+++.+++.++....+...+-.....-+ .+....+++.++|-+- |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHH
Confidence 1247899999999988877775533211111 2345678888888654 444433
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.54 E-value=10 Score=40.38 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=99.5
Q ss_pred CCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccc-------------------------cchhcHHHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVEL-------------------------SEKDGLIALQKQLL 178 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~v-------------------------s~~~~~~~~~~~il 178 (720)
.++.+.+||++++++...|.. ......-+-|+|..|.+. -...+..++..+|+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 445599999999999887752 111112277889998811 01234456666777
Q ss_pred HhhhhcccceeccchhhHHHHHHHHh--cCCeEEEEecCCcHHH-----HHHHhccCCCCCCCCeE--EEEcCChhhhhh
Q 047161 179 SKTLMEIDIEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIRQ-----LNRLAGKHSWFGSGSRI--IIPTRDEHLLRT 249 (720)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrI--ivTTR~~~v~~~ 249 (720)
+++. ..........+..+.+.+.+. ++.+++|||+++.... +-.|......+ .++| |.++-+..+...
T Consensus 95 ~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 95 NKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHH
Confidence 7632 222223444556667777774 5889999999986432 33333333322 4554 444444444333
Q ss_pred c--------cccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhCC-CchHHHHh
Q 047161 250 L--------RVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYADG-LPFALETL 304 (720)
Q Consensus 250 ~--------~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~g-lPLai~~~ 304 (720)
+ +.. .+..++=+.+|-.......+ |.. ....+..+++..++..-+| .-.|+..+
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2 222 25677777888777777765 444 4455555555555555554 44455443
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.26 E-value=21 Score=40.94 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHh----------------hhhcccce-
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSK----------------TLMEIDIE- 188 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~----------------~~~~~~~~- 188 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+.-.. .+.+.+... +..+...+
T Consensus 15 f~divGQe~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr--~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIAR--LLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHH--HHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 36799988888888887743 233 335689999983332111 111111110 00000000
Q ss_pred --eccc-hhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-c
Q 047161 189 --IRND-FDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-D 253 (720)
Q Consensus 189 --~~~~-~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~ 253 (720)
.... ....+.++ +.+ .+++-++|+|+|... ...+.|...+.......++|.+|.+ ..+...... .
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 1000 11222222 222 356678999999854 4577777666654456666655554 444433221 2
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
..|++++++.++..+.+.+.+-......+ .+....|++.++|.+-.+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e-~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFE-PRALQLLARAADGSMRDA 217 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 48999999999999888765422211111 233467888899977533
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.046 Score=60.86 Aligned_cols=112 Identities=23% Similarity=0.366 Sum_probs=65.6
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCC-CCCcccC----CCCCCCCCCCEEecc
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDC-KILVRLP----STINGWKSLRTVNLS 528 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n-~~~~~lp----~~i~~l~~L~~L~L~ 528 (720)
..+++|+.|.+.+|..+ .... +-......++|+.|++++| ......+ .....+.+|+.|+++
T Consensus 185 ~~~~~L~~l~l~~~~~~------~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKI------TDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred hhCchhhHhhhcccccC------Chhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 45688888888887644 2111 1222667889999999873 2222222 223456888899998
Q ss_pred CCCCCcccC-cCc-CCCCCCCEEeccCcc-ccc-CCccccCCcCCceEEEeecC
Q 047161 529 RCSKLENMP-ESL-GQMESLEELDVSGTV-IRQ-PVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 529 ~~~~l~~lp-~~~-~~L~~L~~L~L~~n~-l~~-~~~~~~~~~~~L~~L~l~~~ 578 (720)
+|...+..- ..+ ..+++|++|.+.+|. ++. -...+...+++|+.|++..+
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 886432211 112 237788888877776 332 12223344577888888544
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.6 Score=38.49 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCe-EEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCC
Q 047161 169 GLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNV-LVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 169 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
+...+.+.++..+ ........+..+..+.+.+.+...+. +||+||+... +.++.+..... ..+-+||++.+.
T Consensus 50 ~~~~~~~~i~~~l-~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 50 TPRDFAQEILEAL-GLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp SHHHHHHHHHHHH-T-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CHHHHHHHHHHHh-CccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4566777777773 32222223455666778888876655 9999999876 23566655444 566677776654
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.05 E-value=15 Score=40.57 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=92.7
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-ccee--ccchhhH------------HHHHHHHhcCCeEEEEecC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEI--RNDFDGI------------KMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~--~~~~~~~------------~~l~~~l~~kr~LlVLDdv 215 (720)
..-+-|+|..|. |..++.+.+...+.... .... .+..+.. ..+++.++ +--+||+|||
T Consensus 148 ~~~l~l~G~~G~------GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi 220 (450)
T PRK00149 148 YNPLFIYGGVGL------GKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDI 220 (450)
T ss_pred CCeEEEECCCCC------CHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehh
Confidence 455789999998 44455555555532211 1111 1111111 22333444 2448899999
Q ss_pred CcH---H-HHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CC
Q 047161 216 VHI---R-QLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QP 279 (720)
Q Consensus 216 ~~~---~-~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~ 279 (720)
... + .-+.+...+.. ...|..||+||... .+...+....++++++.+.++-.+++.+++-.. ..
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l 300 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL 300 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 642 1 11222222211 12355688887642 122333334578999999999999999987542 22
Q ss_pred CchHHHHHHHHHHHhCCCchH----HHHhhhh--ccC--CCHHHHHHHHhhhhc-----CCchhHHHHHHhhh
Q 047161 280 SKDYVELIKRIVKYADGLPFA----LETLGSV--LFG--RSVDGWRSTLERLNK-----HSADEILDVLEISF 339 (720)
Q Consensus 280 ~~~~~~~~~~i~~~c~glPLa----i~~~g~~--l~~--k~~~~W~~~l~~l~~-----~~~~~il~~L~lSy 339 (720)
+ .++...|++.+.|-.-. +..+... +.+ -+....++++..+.. ...+.|+++.--.|
T Consensus 301 ~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~ 370 (450)
T PRK00149 301 P---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYY 370 (450)
T ss_pred C---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHc
Confidence 2 24456667777765442 2222221 122 266777777775421 23355555544333
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=9.4 Score=42.77 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=90.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
.+++||-+..++.+...+..+ .-...+-++|..|++ ...+.+.+.+.+.... .
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvG------KTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVG------KTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCC------HHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 367899999888888877432 223446689999993 3333333333321100 0
Q ss_pred ce---ecc-chhhHHH---HHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhcc
Q 047161 187 IE---IRN-DFDGIKM---IKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLR 251 (720)
Q Consensus 187 ~~---~~~-~~~~~~~---l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~ 251 (720)
.+ ... ...+.+. +.+.+ .+++-++|+|++... ..++.|...+.......++|+ ||.-..+.....
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~ 167 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL 167 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH
Confidence 00 000 1111222 22222 356778999999854 457777777765555666664 544444443321
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
--..+++++++.++-.+.+.+.+-...... -.+....+++.++|-+-
T Consensus 168 SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 168 SRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLR 215 (546)
T ss_pred HheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 124889999999998777665432211111 12334567788888553
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=10 Score=41.60 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=92.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+..+..+...+.. +.+. .+-++|..|++.+ .+.+.+.+.+... .
T Consensus 17 f~dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKT------TlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKT------TIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHH------HHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 36789988888888887743 3333 4678999998322 2222222221110 0
Q ss_pred c---ceecc-chhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhhhhc
Q 047161 186 D---IEIRN-DFDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLLRTL 250 (720)
Q Consensus 186 ~---~~~~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~~~~ 250 (720)
. ..... ...+.+.++ +.+ .++.-++|+|+|... +.++.|...+........+| .||....+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0 00100 111222222 222 356668999999854 55888877775443455545 455445554333
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -..|.+.+++.++-.+.+.+.+-.....- -.+....|++.++|.+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHH
Confidence 22 23799999999988887777653321111 13345778889999873
|
|
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.5 Score=47.44 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred hcCCeEEEEecCCcHHH-----HHHHhccCCCCC-CCCeE--EEEcCCh-hhhhhc-cccceEecCCCCHHHHHHHHHHH
Q 047161 204 RRRNVLVVIDDAVHIRQ-----LNRLAGKHSWFG-SGSRI--IIPTRDE-HLLRTL-RVDGVYKVEKLDDDEALELFNKR 273 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~-~gsrI--ivTTR~~-~v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~ 273 (720)
+.|+..+|+||+.-.+. ++.+.....-+. .-..| +.|.+.. ...... .....+.+.+|+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 35799999999942222 344443332000 01122 2223322 111111 22368999999999999998776
Q ss_pred hcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 274 AFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 274 af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
.... .....+..+.|+++.+|.|+-+.-+-..+..
T Consensus 232 l~~~--~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 232 LGCT--KLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred hCCc--ccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 5442 1223456788999999999988877666654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.39 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCCCCEEeccCcccccCCcccc
Q 047161 543 MESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|++|++|+|++|.+..+|+..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777787777777776655
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.39 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCCCCEEeccCcccccCCcccc
Q 047161 543 MESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|++|++|+|++|.+..+|+..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777787777777776655
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=87.88 E-value=28 Score=35.67 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred CCeEEEEecCCc-----------HHHHHHHhccCCCCCCCCeEEEEcCChhhhhhc--------cccceEecCCCCHHHH
Q 047161 206 RNVLVVIDDAVH-----------IRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--------RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 206 kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~~s 266 (720)
..-+|++|++.. .+.++.|...+.....+-+||++|.....-... .....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 346888999963 223555666555444566777777543322111 1245789999999999
Q ss_pred HHHHHHHh
Q 047161 267 LELFNKRA 274 (720)
Q Consensus 267 ~~Lf~~~a 274 (720)
.+++.+.+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99988765
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.65 E-value=7.3 Score=38.00 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=58.7
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecCCcHHH--HHHHhccCC
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQ--LNRLAGKHS 229 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~--~~~l~~~~~ 229 (720)
+.+-|||..|++.| ++.+-+... ... ..... .....+.. +..-++++|||....+ +-.+...+.
T Consensus 45 ~~l~l~Gp~G~GKT------hLl~a~~~~-~~~---~~~~~---~~~~~~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~ 110 (214)
T PRK06620 45 FTLLIKGPSSSGKT------YLTKIWQNL-SNA---YIIKD---IFFNEEIL-EKYNAFIIEDIENWQEPALLHIFNIIN 110 (214)
T ss_pred ceEEEECCCCCCHH------HHHHHHHhc-cCC---EEcch---hhhchhHH-hcCCEEEEeccccchHHHHHHHHHHHH
Confidence 56889999999544 333333222 111 11110 00011222 2345788899974322 222222221
Q ss_pred CCCCCCeEEEEcCCh-------hhhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 230 WFGSGSRIIIPTRDE-------HLLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 230 ~~~~gsrIivTTR~~-------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
..|..||+|++.. ++...+...-++++++++.++-..+..+.+-
T Consensus 111 --e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 111 --EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred --hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3577899998733 2233334445899999999998888777653
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.46 E-value=22 Score=39.13 Aligned_cols=164 Identities=13% Similarity=0.164 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------- 184 (720)
.++++|-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+.+...+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKt------t~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKT------TLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHH------HHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 36799999888888888743 333 44668999998332 2222222222110
Q ss_pred ccce---ecc-chhhHHHH---HHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-Chhhhhh
Q 047161 185 IDIE---IRN-DFDGIKMI---KREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-DEHLLRT 249 (720)
Q Consensus 185 ~~~~---~~~-~~~~~~~l---~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~ 249 (720)
...+ ... ...+.+.+ .+.+ .+++-++|+|+++.. ...+.|...+.....+..+|++|. ...+...
T Consensus 88 ~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 88 TSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000 110 11112222 2223 256678899998754 345666666654445666666653 3444333
Q ss_pred cc-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 250 LR-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 250 ~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -...++++.++.++..+.+.+.+-+.... --.+....+++.++|-+-
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 21 12478999999999888777654322110 112345677888888553
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=19 Score=40.83 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|++... ..++.|...+........+|++|.+ ..+..... --..++++.++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999754 4467777666543445566665554 44443321 12378899999999998888766543111
Q ss_pred chHHHHHHHHHHHhCCCc-hHHHHhhhhc
Q 047161 281 KDYVELIKRIVKYADGLP-FALETLGSVL 308 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glP-Lai~~~g~~l 308 (720)
- -.+....+++.++|-+ .|+..+...+
T Consensus 198 i-d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 Y-DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1244567888888854 6666665443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.40 E-value=0.022 Score=54.34 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
++..+....+||++.|. +..+..+ +.-++.|..|+++.|. +..+|..++.+..+..+++..|
T Consensus 37 ei~~~kr~tvld~~s~r-------~vn~~~n---------~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n- 98 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-------LVNLGKN---------FSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN- 98 (326)
T ss_pred hhhccceeeeehhhhhH-------HHhhccc---------hHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-
Confidence 35667778888888877 3445555 6667778888888877 6778888888888888877665
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
.....|.++++++.++++++.+|.+.
T Consensus 99 ~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 99 NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chhhCCccccccCCcchhhhccCcch
Confidence 46778888888888888888877644
|
|
| >PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments | Back alignment and domain information |
|---|
Probab=87.25 E-value=0.54 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=31.4
Q ss_pred cCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 7 DHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 7 d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
++.+....+.|...|.++|.+|.+.||+.|++-+.|+|+-.|+...
T Consensus 50 ~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A 95 (130)
T PF08937_consen 50 SRDDDSSSEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYA 95 (130)
T ss_dssp TTS---TTTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHH
Confidence 3334445668899999999999999999999999999999998643
|
The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=46 Score=38.05 Aligned_cols=167 Identities=12% Similarity=0.123 Sum_probs=93.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh-----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM----------------------- 183 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~----------------------- 183 (720)
.+++||-+..++.+.+.+..+ .-...+-++|..|++.+. +.+-+.+.+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTt------lAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTT------VSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHH------HHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 367899777778888877532 223456789999983332 22222222110
Q ss_pred --ccccee---c-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhh
Q 047161 184 --EIDIEI---R-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHL 246 (720)
Q Consensus 184 --~~~~~~---~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v 246 (720)
....+. + .....++.+++.+. ++.-++|+|+|+.. ..++.|...+.......++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 000011 0 01123444444442 34557899999854 45777777776544566666555 43444
Q ss_pred hhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 247 LRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 247 ~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
...... -..++++.++.++..+.+.+.+-.....-+ .+....+++.++|-+--+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDA 222 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 433221 247899999999988888776543211111 234567788888876433
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=30 Score=39.56 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCC--C
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDG--Q 278 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~--~ 278 (720)
+++-++|+|+++.. ...+.|...+..-...+.+|++| +-..+..... -...+++.+++.++....+.+.+-.. .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45557899998764 34677777666544566655544 4455544322 23578999999998877776644322 1
Q ss_pred CCchHHHHHHHHHHHhCCCch
Q 047161 279 PSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 279 ~~~~~~~~~~~i~~~c~glPL 299 (720)
.. .+....+++.++|-.-
T Consensus 206 I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CC---HHHHHHHHHHhCCCHH
Confidence 22 2345678888888553
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.57 E-value=50 Score=37.69 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=94.0
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHh---------------------hhhc
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSK---------------------TLME 184 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~---------------------~~~~ 184 (720)
..+++||.+..++.+.+.+..+. -..-+-++|..|++.+... ..+.+.+... +...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~A--r~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTA--RILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHH--HHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 34679999999999988875321 1234668999998322211 0111111110 0000
Q ss_pred cccee---c-cchhhHHHHHHH---H-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhh
Q 047161 185 IDIEI---R-NDFDGIKMIKRE---L-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRT 249 (720)
Q Consensus 185 ~~~~~---~-~~~~~~~~l~~~---l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~ 249 (720)
...+. . .....++.+++. + .+++=++|+|++... ...+.|...+....+.+.+|++| ...++...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 00100 0 011223333333 2 234557899998754 34666766665555667766544 44455433
Q ss_pred ccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 250 LRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 250 ~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
... -..++++.++.++..+.+.+.+-.....- -.+....|++.++|-+.-+.
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 321 24789999999998888877653321111 12445678888898875443
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.02 E-value=31 Score=38.57 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
.+++||-+..++.+...+.. +.+. ++-++|..|.+ ...+.+.+...+....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~--grl~hayLf~Gp~G~G------KTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDN--NRLAHAYLFSGLRGSG------KTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHccCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCc------HHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 36789988888888887743 3333 45689999983 3333333333322111
Q ss_pred ccee---c-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc
Q 047161 186 DIEI---R-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL 250 (720)
Q Consensus 186 ~~~~---~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~ 250 (720)
..+. . ....+.+.+++.+. +++-++|+|++... +..+.|...+....+..++|++|.+. .+....
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 0111 1 01123444544442 44568899999754 44677777666555677777777653 222221
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.. ...+++.+++.++..+...+.+-.....- -.+....+++.++|-+--+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDT 215 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 11 24789999999998887766553321111 1244567888888877443
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=48 Score=36.72 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHH----------------hhhhccccee
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLS----------------KTLMEIDIEI 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~----------------~~~~~~~~~~ 189 (720)
.+++||-+..++.+.+.+.. +.+. -+-++|..|++.+....+ +.+.+.. .+......+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~Ari--lAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARI--ISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHH--HHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46799988888888777643 3333 567899999844332111 1111110 0000111111
Q ss_pred ---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhccc-c
Q 047161 190 ---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLRV-D 253 (720)
Q Consensus 190 ---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~~-~ 253 (720)
+ ......+.+++.+ .+++=++|+|+|... ...+.|...+....+..++|++| ...++...... -
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 1 1122344444433 245567999999754 44677777776555677766655 44555443322 2
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
..+++++++.++-.+.+.+.+-.....-+ .+....|++.++|-+-.
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRN 213 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 47899999999988888876654311111 23345678888887643
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.67 E-value=30 Score=35.21 Aligned_cols=208 Identities=20% Similarity=0.279 Sum_probs=112.5
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHH-hhhhccccee-ccchhhHHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLS-KTLMEIDIEI-RNDFDGIKMIKREL 203 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~-~~~~~~~~~~-~~~~~~~~~l~~~l 203 (720)
..++++|-+..+..+.+-+.. ....+.-.+|..|.+.+... .-+.+++.. ++....-.+. .+.+.++..++...
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTSta--lafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTA--LAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHH--HHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 345688888777777766643 56778889999998433221 111122211 1000000000 12223333333332
Q ss_pred h------c----------CC-eEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhh-hhhccc-cceEecCCCC
Q 047161 204 R------R----------RN-VLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHL-LRTLRV-DGVYKVEKLD 262 (720)
Q Consensus 204 ~------~----------kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~~~~-~~~~~l~~L~ 262 (720)
+ . +. =.+|||+++.. +.|..+......+..-+|.|..|..-.. -...-. -..|..++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 2 1 12 35779999875 5599999999888888886666544332 211111 1368899999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC-chHHHHhhhhcc-CCCHHHHHHHHhhhh-cCCchhHHHHHHhhh
Q 047161 263 DDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL-PFALETLGSVLF-GRSVDGWRSTLERLN-KHSADEILDVLEISF 339 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g~~l~-~k~~~~W~~~l~~l~-~~~~~~il~~L~lSy 339 (720)
+++..+-+...|-+....-+ .+.-+.|+++++|- --|+.++-++-. ++.... ..+.+.+. -.+++.+...|++.+
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~-~~~~e~~~GvVp~~~l~~lle~a~ 267 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAITTLQSLSLLGKRITT-SLVNEELAGVVPDEKLLDLLELAL 267 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHhhccCcccch-HHHHHHHhccCCHHHHHHHHHHHH
Confidence 99988888877754421111 23457788999884 445554433322 232110 11122333 345566666666655
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.60 E-value=38 Score=40.24 Aligned_cols=164 Identities=12% Similarity=0.145 Sum_probs=90.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------- 184 (720)
.+++||-+..++.|...+.. +.+ ..+-++|..|++.+ .+.+-+.+.+...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKT------t~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKT------SSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHH------HHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 36789988888888888753 333 34678999999332 2222222221100
Q ss_pred -cccee---cc-chhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhh
Q 047161 185 -IDIEI---RN-DFDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLR 248 (720)
Q Consensus 185 -~~~~~---~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~ 248 (720)
...+. .. ....++.++ +.+ .+++=++|+|+++.. ..++.|...+..-.....+|++| ....+..
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00111 00 111233333 322 245557889999854 44777777776655677766555 4445554
Q ss_pred hccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 249 TLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 249 ~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.+.. ...|++..++.++-.+.+.+.+-...... -.+....+++.++|-+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 4322 35789999999988877766432211111 12234567778888663
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=85.56 E-value=7 Score=45.99 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHhhhhccCCCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-
Q 047161 107 FIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI- 185 (720)
Q Consensus 107 ~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~- 185 (720)
.+++...++..+..+. ..+.++||+.+++++.+.|.... ..=+-++|..|++. ..+.+.+...+....
T Consensus 164 ~l~~~~~~l~~~~r~~---~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GK------T~l~~~la~~~~~~~~ 232 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNG---KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGK------TAIAEGLALRIAEGKV 232 (731)
T ss_pred HHHHHhhhHHHHHhcC---CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCH------HHHHHHHHHHHHhCCC
Confidence 3444444444333332 23569999999999998885432 22345899999833 333333333321110
Q ss_pred -----cceec--cch----------hhHHHHHHHH----hcCCeEEEEecCCcH-----------HHHHHHhccCCCCCC
Q 047161 186 -----DIEIR--NDF----------DGIKMIKREL----RRRNVLVVIDDAVHI-----------RQLNRLAGKHSWFGS 233 (720)
Q Consensus 186 -----~~~~~--~~~----------~~~~~l~~~l----~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~ 233 (720)
..... +.. +....+++.+ +.++.+|++|++... +.-+-++..+. .
T Consensus 233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~ 309 (731)
T TIGR02639 233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---S 309 (731)
T ss_pred chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---C
Confidence 00010 000 1112344333 246789999998733 11223333332 3
Q ss_pred CC-eEEEEcCChhhhhh--------ccccceEecCCCCHHHHHHHHHHHh
Q 047161 234 GS-RIIIPTRDEHLLRT--------LRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 234 gs-rIivTTR~~~v~~~--------~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
|. ++|-+|...+.... -.. .++++++++.++..+++....
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHH
Confidence 33 34444443222111 122 368999999999999998644
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=42 Score=38.52 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=92.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHH-HHHHHh-----------------hhhcccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQ-KQLLSK-----------------TLMEIDI 187 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~-~~il~~-----------------~~~~~~~ 187 (720)
.+++||-+..++.+...+.. +.+ ..+-++|..|++.+. ...+. +.+... +......
T Consensus 16 f~~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt---~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTT---CARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHH---HHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 36789988888888888743 334 346789999984443 11111 112100 0000001
Q ss_pred ee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhccc
Q 047161 188 EI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLRV 252 (720)
Q Consensus 188 ~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~~ 252 (720)
+. . ......+.+++.+ .+++=++|+|++... ..++.|...+.....++.+|+ ||+...+......
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 10 0 0011123333332 244557899998754 457777777665556677665 4455555544322
Q ss_pred -cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 253 -DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 253 -~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
..++++++++.++....+.+.+-......+ .+....+++.++|-.-
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr 217 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMR 217 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 347899999999988888765543211111 2345677888888654
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=49 Score=37.01 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EI 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~ 185 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+-+.+.+.. ..
T Consensus 15 f~divGq~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKT------t~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQ--QYLHHAYLFTGTRGVGKT------TISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHh--CCCCeeEEEECCCCCCHH------HHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 36799999999999888853 233 24568999998333 222222222110 00
Q ss_pred cce---ec-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIE---IR-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~---~~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+ .. .....++.+++.+. ++.-++|+|+|+.. ...+.|...+....+..++|++|.+ .++....
T Consensus 87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 001 11 11233444444432 45567889999853 4567777666655566777765544 3443322
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.. -..+++++++.++-.+.+.+.+-.....-+ .+....+++.++|-+--+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHH
Confidence 11 246889999988876655444322211111 223456788888877544
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=84.37 E-value=20 Score=41.27 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCCCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
..++++|.++.++++.+.+. . +..-.+-|-++|..|. +...+.+.+... .+.......
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGT------GKT~LAralA~e-~~~p~i~is~s~f~ 253 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGT------GKTLLAKAIAGE-AEVPFFSISGSEFV 253 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCC------CHHHHHHHHHHH-hCCCeeeccHHHHH
Confidence 34578999988888766542 1 1112345789999999 333334444333 111111100
Q ss_pred ------cchhhHHHHHHHHhcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKRELRRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
........+.....+...+|++||++... .+..+...++.+ ..|-.||.||...+.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 01111222333335678899999996431 133444333322 235567777776544
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
... -..+..+.+...+.++-.++++.++-...... ......+++.+.|.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 332 23466788999999999999988775431111 11234566666663
|
|
| >COG3903 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.99 E-value=1.6 Score=45.79 Aligned_cols=148 Identities=24% Similarity=0.260 Sum_probs=97.8
Q ss_pred hHHHHHHHHhcCCeEEEEecCCcHHH-HHHHhccCCCCCCCCeEEEEcCChhhhhhccccceEecCCCCHH-HHHHHHHH
Q 047161 195 GIKMIKRELRRRNVLVVIDDAVHIRQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDD-EALELFNK 272 (720)
Q Consensus 195 ~~~~l~~~l~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~-~s~~Lf~~ 272 (720)
....+..+..++|.++|+||--+... -..+...+..+.+.-+|+.|+|+.... ..+..+.++.|+.- ++.++|..
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHH
Confidence 45567788889999999998765432 223333333344556788888865543 33557788888765 79999987
Q ss_pred HhcCC----CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHh-h---hhcC------CchhHHHHHHhh
Q 047161 273 RAFDG----QPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLE-R---LNKH------SADEILDVLEIS 338 (720)
Q Consensus 273 ~af~~----~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~-~---l~~~------~~~~il~~L~lS 338 (720)
.|-.. .....-.....+|.++..|.|++|...++..+.....+--+-++ . ++.. ........++.|
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 77433 11223345567888999999999999998888765555444443 1 2221 124457788888
Q ss_pred hcCCchh
Q 047161 339 FNGLKGR 345 (720)
Q Consensus 339 yn~L~~~ 345 (720)
|--|++.
T Consensus 234 ~~lLtgw 240 (414)
T COG3903 234 YALLTGW 240 (414)
T ss_pred hHhhhhH
Confidence 8888766
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.76 E-value=23 Score=40.51 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=92.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh---------------------hcc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL---------------------MEI 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~---------------------~~~ 185 (720)
.+++||-+.-++.+...+..+. --..+-++|..|++.+ .+.+.+.+.+. ...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKT------tlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKT------STARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 3679999988888888775321 1234568999998322 22222222111 000
Q ss_pred ccee---cc-chhhHH---HHHHHHh-----cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIEI---RN-DFDGIK---MIKRELR-----RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~~---~~-~~~~~~---~l~~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+. .. .....+ .+.+.+. +++-++|+|++... +..+.|...+........+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 00 011122 2223222 45668999998743 4567777666554556677666643 3443322
Q ss_pred c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 251 R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 251 ~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
. -...++++.++.++....+.+.+-.....- -.+....+++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 1 124678889999988888777654331111 124466788899998864443
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=52 Score=37.00 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+-+.+.+... .
T Consensus 15 f~divGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKT------t~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKT------TLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 36789999888888888753 233 34568999998433 2222222221110 0
Q ss_pred cce---ec-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIE---IR-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~---~~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+ .. ......+.+++.+ .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+....
T Consensus 87 ~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 000 00 0012233344332 255668999999854 3466777666654456666666644 3333221
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -..++++.++.++..+.+.+.+-...... -.+....+++.++|.+-
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 11 24788999999988877766543221111 12334667888888774
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.44 E-value=3.4 Score=43.02 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=81.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCc--------------------cccchhcHHHHHHHHHHhhh-h
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGV--------------------ELSEKDGLIALQKQLLSKTL-M 183 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi--------------------~vs~~~~~~~~~~~il~~~~-~ 183 (720)
..+.+.+|+.+++.+..++...+..+ ..|-|+|-.|. +.-..|..+.+.++|+.+.. .
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 34678899999999999996555533 44578999988 23345677777888888742 1
Q ss_pred ccccee-----ccchhhHHHHHH--HHh--cCCeEEEEecCCcHHHHHH-----Hh---ccCCCCCCCCeEEEEcCC---
Q 047161 184 EIDIEI-----RNDFDGIKMIKR--ELR--RRNVLVVIDDAVHIRQLNR-----LA---GKHSWFGSGSRIIIPTRD--- 243 (720)
Q Consensus 184 ~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVLDdv~~~~~~~~-----l~---~~~~~~~~gsrIivTTR~--- 243 (720)
.++... .+..+.+..+.+ ... +++++||||+++...+.+. +. ...+ .+ .-+|+++--
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iils~~~~e 160 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIILSAPSCE 160 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEEeccccH
Confidence 111111 122222333333 122 4699999999987655222 11 1222 12 223333322
Q ss_pred hhhhhhccccc--eEecCCCCHHHHHHHHHH
Q 047161 244 EHLLRTLRVDG--VYKVEKLDDDEALELFNK 272 (720)
Q Consensus 244 ~~v~~~~~~~~--~~~l~~L~~~~s~~Lf~~ 272 (720)
++-...+|+.. +...+.-+.+|-.+++.+
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 22222245543 455667788888887754
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.97 E-value=1 Score=47.16 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=11.8
Q ss_pred CCCCceeeecCCCCCC
Q 047161 455 GAPNLEELILDGCKRL 470 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l 470 (720)
+..+|++|-+++|+.+
T Consensus 318 ~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQF 333 (483)
T ss_pred CCCceEEEeccccchh
Confidence 5578888888888754
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.76 E-value=29 Score=40.19 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-----------------ccee
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-----------------DIEI 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-----------------~~~~ 189 (720)
..++||-+..++.+...+..+ .-...+-++|..|++.+ .+.+.+...+.... ..+.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKT------t~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv 89 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKT------SVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI 89 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHH------HHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE
Confidence 357889888888888877432 12334567999998332 22222222211100 0010
Q ss_pred ---cc----chhhHHHHHHHHh-----cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhhhhcc-cc
Q 047161 190 ---RN----DFDGIKMIKRELR-----RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLLRTLR-VD 253 (720)
Q Consensus 190 ---~~----~~~~~~~l~~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~~~~~-~~ 253 (720)
.. ..+.++.+.+.+. +++-++|+|++... ..+..|...+........+| +||+...+..... -.
T Consensus 90 ieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 90 IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred EEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Confidence 00 0111233333332 56668899998743 45777777666544555555 4555555543321 12
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
..+++.+++.++..+.+...+-......+ .+....+++.++|-+-
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR 214 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLR 214 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 48899999999988877765432211111 2335567788888653
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.50 E-value=9.9 Score=37.50 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=64.2
Q ss_pred cCCCCCccccchhHHHHHHhh---hccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----ccchhh
Q 047161 124 LGILDDLVEMNSRLKKLRLLL---DAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-----RNDFDG 195 (720)
Q Consensus 124 ~~~~~~~vG~~~~~~~i~~~L---~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-----~~~~~~ 195 (720)
+...++++|+|.+++.|++=. ..+. ...-|-+||..|.+. ..+.+.++... ....... .+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGK------SSlVkall~~y-~~~GLRlIev~k~~L~~- 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGK------SSLVKALLNEY-ADQGLRLIEVSKEDLGD- 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCH------HHHHHHHHHHH-hhcCceEEEECHHHhcc-
Confidence 345567999999998886422 1222 233455799999844 45555565552 2222211 11111
Q ss_pred HHHHHHHH--hcCCeEEEEecCC---cHHHHHHHhccCCCC---CCC-CeEEEEcCChhhhhh
Q 047161 196 IKMIKREL--RRRNVLVVIDDAV---HIRQLNRLAGKHSWF---GSG-SRIIIPTRDEHLLRT 249 (720)
Q Consensus 196 ~~~l~~~l--~~kr~LlVLDdv~---~~~~~~~l~~~~~~~---~~g-srIivTTR~~~v~~~ 249 (720)
...+-+.+ +..||+|.+||.. ++.....|+..+..+ .|. -.|.+||.-+++...
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 23334444 3579999999985 233456666655422 222 345556655566544
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.85 E-value=21 Score=37.41 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
++=.+|+|+++.. .....|...+..-..++.+|+||.+. .+...... -..+.+.+++.+++.+.+.... ....
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~~-- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PESD-- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccCC--
Confidence 3334567999853 45666666665544677777777765 44444322 2368999999999998887653 1111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHh
Q 047161 282 DYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.+-...++..++|.|..+..+
T Consensus 183 --~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 --ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --hHHHHHHHHHcCCCHHHHHHH
Confidence 223456788999999765544
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=72 Score=36.29 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=91.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhh----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLM---------------------- 183 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~---------------------- 183 (720)
.+++||-+..++.+...+.. +.+. .+-++|..|++.+. +.+-+...+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt------~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTS------SARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHH------HHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 36799988888888888753 3343 45789999993222 22222222110
Q ss_pred ccccee---cc-chhhHHHHH---HHH-----hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEE-EcCChhhhh
Q 047161 184 EIDIEI---RN-DFDGIKMIK---REL-----RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIII-PTRDEHLLR 248 (720)
Q Consensus 184 ~~~~~~---~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~ 248 (720)
....+. +. ....++.++ +.+ .+++=++|+|++.. ....+.|...+........+|+ ||....+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000111 00 111233333 222 24556889999874 4557777777765555666555 444455544
Q ss_pred hccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 249 TLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 249 ~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.... ...|+...++.++..+.+.+.+-.....-+ .+....|++.++|-+-
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 3321 347899999999988777765543211111 2334567778888663
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=81.05 E-value=19 Score=39.98 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=79.1
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------ID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------~~ 186 (720)
..++.|.+..++++...+.. +-...+-|-++|..|.+. ..+.+.+...+... ..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGK------T~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGK------TLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcH------HHHHHHHHHhhccccccccCCceeE
Confidence 35688899999888776531 112234577899999833 33444444442110 00
Q ss_pred ceec----------cchhhHHHHHHHHh-----cCCeEEEEecCCcHH---------H-----HHHHhccCCCCC--CCC
Q 047161 187 IEIR----------NDFDGIKMIKRELR-----RRNVLVVIDDAVHIR---------Q-----LNRLAGKHSWFG--SGS 235 (720)
Q Consensus 187 ~~~~----------~~~~~~~~l~~~l~-----~kr~LlVLDdv~~~~---------~-----~~~l~~~~~~~~--~gs 235 (720)
.... ........+.+..+ +++++|++|+++... + ...+...++... .+.
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 0000 00111222222222 478999999997431 1 223333333222 344
Q ss_pred eEEEEcCChhhhhh-----ccccceEecCCCCHHHHHHHHHHHhc
Q 047161 236 RIIIPTRDEHLLRT-----LRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 236 rIivTTR~~~v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
.||.||...+.... -..+..++++..+.++..++|.++.-
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 56667765544321 24567899999999999999998753
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=80.47 E-value=1.5 Score=24.60 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.6
Q ss_pred cceEeeCCCCchhHHhhhc
Q 047161 426 KTLECNMCYRRIEQFWKGI 444 (720)
Q Consensus 426 ~l~~L~l~~~~i~~l~~~~ 444 (720)
++++|++++++++.+|.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4688999999999999875
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.17 E-value=44 Score=34.75 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=59.4
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=++|+|++... .....|...+.... ...+|++| +-..+...... ...+++.+++.++..+.+.+.......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~- 200 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL- 200 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-
Confidence 56667889998754 34666666664444 34555554 44555554432 247899999999999998876421111
Q ss_pred chHHHHHHHHHHHhCCCchHHHH
Q 047161 281 KDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~ 303 (720)
...-..++..++|-|..+..
T Consensus 201 ---~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 201 ---NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ---hhHHHHHHHHcCCCHHHHHH
Confidence 11125778899999976554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 720 | ||||
| 3jrn_A | 176 | Crystal Structure Of Tir Domain From Arabidopsis Th | 2e-17 | ||
| 3ozi_A | 204 | Crystal Structure Of The Tir Domain From The Flax D | 9e-15 |
| >pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 | Back alignment and structure |
|
| >pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-54
Identities = 58/137 (42%), Positives = 68/137 (49%), Gaps = 22/137 (16%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
++ F+D KELE G+ SP L IE SRF+VVV S NYA S+WCLDEL I
Sbjct: 36 SIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGS 95
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P VR QT E F KH RE EKV WR ALT A SG D
Sbjct: 96 ITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD 153
Query: 102 RHEVEFIQEIVKEISRK 118
+ + + +I EIS K
Sbjct: 154 -DDSKLVDKIANEISNK 169
|
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 4e-53
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
+ F D EL +GK + P L +AI++S+ V + S YA S WCL ELA+I
Sbjct: 63 KIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDP 122
Query: 53 ------------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLK 100
P+ VR QT + +AF KH + + +QNW+ AL +V + GWH+
Sbjct: 123 RRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN--KFDGQTIQNWKDALKKVGDLKGWHIG 180
Query: 101 D-RHEVEFIQEIVKEISRK 118
+ ++ +I
Sbjct: 181 KNDKQGAIADKVSADIWSH 199
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 5e-33
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
G +++ D L G ++ + K + SRF +VV S ++ W EL +
Sbjct: 47 GAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGR 106
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHAL 88
V + + + A + +S +++ A+
Sbjct: 107 SRILPIWHKVSKDEVASFSPTMADKLAFNTS--TKSVDEIVADLMAI 151
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 81/500 (16%), Positives = 159/500 (31%), Gaps = 129/500 (25%)
Query: 2 VKIFEDH--KELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKIPTVVRKQ 59
+ +FED + K +++ S++ S +D + V
Sbjct: 22 LSVFEDAFVDNFD---------CKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGT 64
Query: 60 TRSFHEAFAKHEEAFRESTEKV--QNWRHALTEVANPSGWHLKDRHEVEFIQ-EIVKEIS 116
R F +K EE ++ E+V N+ + L + E Q ++ +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINY-----------KF-LMSPIKTEQRQPSMMTRMY 112
Query: 117 RKKGPRTLGILDDLVEMN-SRLKKLRLLLDA--ESRDVRMIGICGMGGV----------- 162
++ R + N SRL+ L A E R + + I G+ G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 163 ------------------ELSEKDGLIALQKQLLSK------TLMEIDIEIRNDFDGIKM 198
+ + ++ + ++LL + + + I+ I+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 199 IKREL----RRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG 254
R L N L+V+ + + + N F +I++ TR + + L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 255 VYKV------EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVL 308
+ L DE L K + +D L + ++ P L +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQD---LPREVLT---TNPRRLS-----I 332
Query: 309 FGRSVDGWRSTLERLNKHSADEILDVLEISFNGLKGRIEIMRKS-------PEE---PGK 358
S+ +T + + D++ ++E S N L+ RK P P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTI 390
Query: 359 C-SRLWK------VADVSHVLRRNTAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWH 411
S +W V V + L + + K + I ++ L L +E L H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYAL---H 446
Query: 412 GYPLKSLPSSMEMDKTLECN 431
+S+ + KT + +
Sbjct: 447 ----RSIVDHYNIPKTFDSD 462
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 1e-14
Identities = 103/620 (16%), Positives = 185/620 (29%), Gaps = 179/620 (28%)
Query: 174 QKQLLSKTLMEIDIE-IRNDFDGIKMIKRELRRRNVLVVIDDAV--HIRQLNRLAGKHSW 230
+ Q K ++ + + ++FD K ++ + ++ HI
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKS-----ILSKEEIDHI------------ 54
Query: 231 FGSGSRIIIPTRDEHLLR---TLRVDG--VYK--VEKLDDDEALELFNK-RAFDGQPSKD 282
I+ LR TL + + VE++ L + + QPS
Sbjct: 55 ------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 283 YVELI-KRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNG 341
I +R Y D F +V + R L L + +G
Sbjct: 109 TRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKN--------VLIDG 157
Query: 342 LKGR------IEIMRKSPEEPGKCSRL-WKVADVSHVLRRNTAFLKMTNLRLLKIHNLQ- 393
+ G +++ + ++ W ++ + T + L N
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 394 -------LPAGLESLSDELR-LLQWHGYPLKSLPSSMEMDKTLECNMCYRR-IEQFWKGI 444
+ + S+ ELR LL+ Y L + + N+ + F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCL---LVLL-----NVQNAKAWNAFNLSC 266
Query: 445 KNLIRT-----PDFTGAPNLEELILDGCKR----------LQNC--TSLTTLPREIATES 487
K L+ T DF A + LD L LPRE+ T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLE 547
++ ++ D +T + WK + C KL + ES SL
Sbjct: 327 P-----RRLSIIAESIRD------GLATWDNWKHVN------CDKLTTIIES-----SLN 364
Query: 548 ELDVSGTVIRQPVP--SIF-----FPSRILKVYLFVDTRDHRTSSSSWHLWF------PF 594
L+ + R+ S+F P+ +L + +WF
Sbjct: 365 VLEPA--EYRKMFDRLSVFPPSAHIPTILLSL-----------------IWFDVIKSDVM 405
Query: 595 SLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDD 653
++ K S+ P S+ + L+ L ++ N +L R ++H K DD
Sbjct: 406 VVVNKLHKYSLVEKQPK-ESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 654 CKRLRSLSELPSD----------IKKVRVHGCTSLAT--------ISDALRSCNSATSRI 695
L D +K + +L + +R ++A
Sbjct: 464 ------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW--- 514
Query: 696 FCINCPKLILNWLQQYSIFK 715
N ILN LQQ +K
Sbjct: 515 ---NASGSILNTLQQLKFYK 531
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 8e-14
Identities = 81/497 (16%), Positives = 157/497 (31%), Gaps = 146/497 (29%)
Query: 267 LELFNKRAFDGQPSKDYVELIKRIVKYAD-----GLPFALETLGSVLFGRSVDGWRSTLE 321
+ F FD KD ++ K I+ + A+ LF W TL
Sbjct: 26 EDAF-VDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRLF------W--TLL 72
Query: 322 RLNKHSADEIL-DVLEISFNGLKGRIEIMRKSPEEPGKC-----SRLWKVADVSHVLRRN 375
+ + + +VL I++ L I+ ++ P + RL+ V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV------- 125
Query: 376 TAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPL--KS-LPSSMEMDKTLECNM 432
F K RL L+ L L +L G K+ + + + ++C M
Sbjct: 126 --FAKYNVSRLQPYLKLR--QALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 433 CYRRIEQFWKGIKNLIRTPDFTGAPNLEELILD-GCKRLQNCTSLTTLPREI--ATESLQ 489
++ I FW +KN +P+ L++L+ + + I L+
Sbjct: 181 DFK-I--FWLNLKN-CNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 490 KLIEL------LTGLVFLNLND----------CKILV--RLPSTINGWKSLRTVNLSRCS 531
+L++ L LV LN+ + CKIL+ R + + T ++S
Sbjct: 236 RLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--- 290
Query: 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLW 591
L++ +L E L + + P +L
Sbjct: 291 -LDHHSMTLTPDEVKSLL---LKYLDCRPQDL--PREVLTT------------------- 325
Query: 592 FPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651
P L S+ S+R + +KH+
Sbjct: 326 NPRRL--------------SIIAE-------------------SIRDGLATWDNWKHVNC 352
Query: 652 DDCKRLR--SLSEL-PSDIKKVRVHGCTSLATISDALRSCNSATSRIFCI-------NCP 701
D + SL+ L P++ +K+ L+ + + + + +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAH----IPTILLSLIWFDVIKSDV 404
Query: 702 KLILNWLQQYSIFKARR 718
+++N L +YS+ + +
Sbjct: 405 MVVVNKLHKYSLVEKQP 421
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 53/326 (16%), Positives = 102/326 (31%), Gaps = 86/326 (26%)
Query: 381 MTNLRLLKIHNLQLPAGLESLSDE--LRLLQWHGYPLKSLPSSME---MDKTLECNMCYR 435
++ + + ++ ++ G LK+ +E + +
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91
Query: 436 RIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL 495
+ QF L +L+ + +D L LP +
Sbjct: 92 PLPQFPDQAFRLS---------HLQHMTIDAAG-------LMELPDTMQQ---------F 126
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESL---------GQMESL 546
GL L L L LP++I LR +++ C +L +PE L + +L
Sbjct: 127 AGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
+ L + T IR SI + + + + ++
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKI--------------------------RNSPLS 219
Query: 607 LMLPSLSGLCSLTEL-------------------NLKKLNLR-RNNFVSLRGTINHLPKF 646
+ P++ L L EL LK+L L+ +N ++L I+ L +
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 647 KHLKLDDCKRLRSLSELPSDIKKVRV 672
+ L L C L L L + + +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCI 305
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 45/219 (20%)
Query: 380 KMTNLRLLKIHNLQ---LPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLE------C 430
++++L+ + I LP ++ + L L PL++LP+S+ L C
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFA-GLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 431 NMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK---------RLQN-------CT 474
+ + + + + + + G NL+ L L+ LQN +
Sbjct: 161 P----ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 475 SLTTLPREIAT-ESLQKL--------------IELLTGLVFLNLNDCKILVRLPSTINGW 519
L+ L I L++L L L L DC L+ LP I+
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 520 KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ 558
L ++L C L +P + Q+ + + V + Q
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 29/233 (12%), Positives = 51/233 (21%), Gaps = 68/233 (29%)
Query: 456 APNLEELILDGCKRL-------QNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI 508
+ E L G L R S + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR-WHSAWRQANS--NNPQIETRTGRA 67
Query: 509 LVRLPSTINGWKS--LRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566
L + + L L P+ ++ L+ + + + +
Sbjct: 68 LKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLME-------- 118
Query: 567 SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKL 626
LP + L+ L
Sbjct: 119 ------------------------------------------LP--DTMQQFA--GLETL 132
Query: 627 NLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL-SELPSDIKKVRVHGCTSL 678
L RN +L +I L + + L + C L L L S G +L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 59/235 (25%)
Query: 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMES 545
S +G L L ++ W+ + +R +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 546 LEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605
+ +G ++ + ++ +V L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVAL------------------------------- 86
Query: 606 ALMLPSLSGLCSLTEL--------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRL 657
L L + +L+ + + + L T+ + L L
Sbjct: 87 -----ELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-- 138
Query: 658 RSLSELPSDI------KKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLILN 706
L LP+ I +++ + C L + + L S +++ +N L L
Sbjct: 139 --LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 9e-22
Identities = 42/351 (11%), Positives = 91/351 (25%), Gaps = 52/351 (14%)
Query: 45 CLDELAKIPTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHE 104
+ ++K+ T + + + E N + L + + +
Sbjct: 40 HSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPD 99
Query: 105 VEFIQEIVKEISRKKGPRTLG-----ILDDLVEMNSRLKKLR-LLLDAESRDVRMIGICG 158
+ I + SR+ R L + ++ L + D + + G
Sbjct: 100 LLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHG 159
Query: 159 MGGV-----------------------------------ELSEKDGLIALQKQLLSKTLM 183
G + I L + L
Sbjct: 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 219
Query: 184 EIDIEIRNDFDGIKMIKRELR-RRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTR 242
+E +MI L R N L V DD V + R ++ TR
Sbjct: 220 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRW------AQELRLRCLVTTR 273
Query: 243 DEHLLRTLRVDG-VYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301
D + +V L+ DE + + +++ + ++ + G P L
Sbjct: 274 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 333
Query: 302 ETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGLKGRIEIMRKS 352
++ + +L + + S+ L +++
Sbjct: 334 MMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLA---MALQRC 381
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 57/262 (21%)
Query: 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGG-------------------------- 161
V + ++ L + + I GM G
Sbjct: 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH 183
Query: 162 -VELSEKD--GLIALQKQLLSKTLMEIDIEIRNDFD---GIKMIKRELRRRNV--LVVID 213
V + ++D GL+ + L ++ + R + ++ + R++ L+++D
Sbjct: 184 WVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 243
Query: 214 DAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG--VYKVEKLDDDEALELFN 271
D + L F S +I++ TRD+ + ++ V L ++ LE+ +
Sbjct: 244 D---VWDSWVL----KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILS 296
Query: 272 KRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSA--- 328
+ D E I+K G P + +G++L + W L++L
Sbjct: 297 LFVNMKKA--DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI 353
Query: 329 --------DEILDVLEISFNGL 342
+ + + + IS L
Sbjct: 354 RKSSSYDYEALDEAMSISVEML 375
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 48/309 (15%), Positives = 93/309 (30%), Gaps = 54/309 (17%)
Query: 377 AFLKMTNLRLL-----KIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECN 431
A ++T L++L G E L+ ++ + H + ++ D+ L
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL--- 398
Query: 432 MCYRRIEQFWKGIKNLI-RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQK 490
+++ I R P+ + L + +T + + I + L K
Sbjct: 399 -------NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI--QRLTK 449
Query: 491 LIEL------LTGL------VFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538
L + T N + K + + K L V L C + +P+
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509
Query: 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598
L + L+ L+++ +R+ D T +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRL--------ADDEDTGPKIQIFYM------ 555
Query: 599 KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLR 658
+ P+ + L + L L+ N L K LKLD +
Sbjct: 556 ---GYNNLEEFPASASLQKMV--KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ--- 606
Query: 659 SLSELPSDI 667
+ E+P D
Sbjct: 607 -IEEIPEDF 614
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 55/406 (13%), Positives = 108/406 (26%), Gaps = 106/406 (26%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTNLRLLKIHN 391
L ++ + + A ++ + +L ++++N
Sbjct: 450 LQIIYFANSPFTY-------DNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYN 500
Query: 392 LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTP 451
+ L D L Y L L ++L N+ R + + R
Sbjct: 501 CPN---MTQLPDFL-------YDLPEL-------QSL--NIACNRGISAAQLKADWTRLA 541
Query: 452 D-FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL---------------L 495
D P ++ + L P + + + KL L
Sbjct: 542 DDEDTGPKIQIFYMGYNN-------LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN 594
Query: 496 TGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVS 552
L L L+ + + +P + + S KL+ +P + + + +D S
Sbjct: 595 VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS 652
Query: 553 GTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLW-FPFSLMQKGSS--------- 602
I +I K + S + FP L GS
Sbjct: 653 YNKIGSEGRNISCSMDDYKG-----INASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 603 -------DSMALMLPSLSGLCSLTELN--------------------LKKLNLRRNNFVS 635
+S+ + LT ++ L +++ N F S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767
Query: 636 LRGTINHLPKFKHLKLDDCKRL---RSLSELPSDIKKVRVHGCTSL 678
+ + K + + R L + P+ I C SL
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-----CPSL 808
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 6e-12
Identities = 41/377 (10%), Positives = 89/377 (23%), Gaps = 89/377 (23%)
Query: 334 VLEISFNGLKGRIEIMRKSPEEPGKCSRL-------WKVADVSHVLRRNTAFLKMTNLRL 386
L ++ G KGR+ P+ G+ + L + M+ R
Sbjct: 327 GLSLAGFGAKGRV------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 387 LKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKN 446
+I + L L + P + K ++ +I + N
Sbjct: 381 HRI-RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG----NLTN 435
Query: 447 LIRT--PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL-----------IE 493
I L+ + T + E
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSP-------FTYDNIAVDWEDANSDYAKQYENEELSWS 488
Query: 494 LLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR---------CSKLENMPESLGQME 544
L L + L +C + +LP + L+++N++ + + +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 545 SLEELDVSGTVIRQ-PVPSIFFPSRILKV-YLFVDTRDHRTSSSSWHLWFPFSLMQKGSS 602
++ + + + P + L +
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDC---------------------------V 581
Query: 603 DSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLS 661
+ L + LT+ L L N + + + L K L
Sbjct: 582 HNKVRHLEAFGTNVKLTD-----LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK----LK 632
Query: 662 ELPSDIKKVRVHGCTSL 678
+P+ +
Sbjct: 633 YIPNIFN---AKSVYVM 646
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 52/357 (14%), Positives = 112/357 (31%), Gaps = 72/357 (20%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEP--GKCSRLWKVADVSH-VLRRNTAFLKMTNLRLLK 388
+ + + +N L+ P K +L + D H +R AF L LK
Sbjct: 550 IQIFYMGYNNLEE-------FPASASLQKMVKLGLL-DCVHNKVRHLEAFGTNVKLTDLK 601
Query: 389 IHN---LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMD--KTLEC-NMCYRRIEQFWK 442
+ ++P + +D++ L + LK +P+ + + Y +I +
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Query: 443 GIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLN 502
I + D N + L + + P E+ + + +
Sbjct: 662 NI---SCSMDDYKGINASTVTLSYNE-------IQKFPTEL--------FATGSPISTII 703
Query: 503 LNDCKI-------LVRLPSTINGWKSLRTVNLSRCSKLENMPESL--GQMESLEELDVSG 553
L++ + L L T++L KL ++ + + L +DVS
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSY 762
Query: 554 TVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613
P+ S LK F + + + P+
Sbjct: 763 NCFSS-FPTQPLNSSQLKA-------------------FGIRHQRDAEGNRILRQWPT-- 800
Query: 614 GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLR-SLSELPSDIKK 669
G+ + +L +L + N+ + + P+ L + D + ++ + I+
Sbjct: 801 GITTCP--SLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA 853
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 8e-09
Identities = 18/169 (10%), Positives = 45/169 (26%), Gaps = 7/169 (4%)
Query: 501 LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV 560
N + ++ + ++L+ +P+++GQ+ L+ L
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620
+ R R L + L P + + +
Sbjct: 364 RLFGDEELTPDMSEERKHRI-RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422
Query: 621 LNLKKLNLRR--NNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
++LK + N + I L K + + + + +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP----FTYDNIAV 467
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 40/348 (11%), Positives = 87/348 (25%), Gaps = 76/348 (21%)
Query: 335 LEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTNLRLLKIHNLQL 394
L + G GR+ P+ G+ + L L + + L
Sbjct: 86 LSLEGFGASGRV------PDAIGQLTEL--------------EVLALGSHGEKVNERLFG 125
Query: 395 PAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454
P G+ + + + + + K+ + + + K IK R
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT--- 182
Query: 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------LTGLVF------LN 502
++ ++T + + + L KL + N
Sbjct: 183 --LKDTQIGQLS-------NNITFVSKAVM--RLTKLRQFYMGNSPFVAENICEAWENEN 231
Query: 503 LNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG---TVIRQP 559
+ + K L V + C L +P L + ++ ++V+ Q
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291
Query: 560 VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619
+ ++ + P + L +
Sbjct: 292 KDDWQALADAPV------------GEKIQIIYI---------GYNNLKTFPVETSLQKMK 330
Query: 620 ELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
L L N K L L + ++E+P++
Sbjct: 331 --KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ----ITEIPANF 372
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 42/370 (11%), Positives = 98/370 (26%), Gaps = 96/370 (25%)
Query: 378 FLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYP-LKSLPSSMEMDKTLEC-NMCYR 435
+ N + + ++L +L ++ + P L LP+ ++ ++ N+
Sbjct: 226 AWENENSEYAQQYKT-EDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283
Query: 436 RIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK--------RLQNCTSLTTL-------- 479
R + + D ++ + + LQ L L
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 480 --PREIATESLQKLIEL-----------------LTGLVFLNLNDCKILVRLPST--ING 518
S KL L + L+ K L +P+
Sbjct: 344 GKLPAFG--SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKS 400
Query: 519 WKSLRTVNLSR-------CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571
+ ++ S + + + + ++ +++S I + +F L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL---------- 621
+ +++ + +S+ + LT +
Sbjct: 461 S-----------------INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503
Query: 622 ----------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRS---LSELPSDIK 668
L ++L N+F + K + + + + L E P I
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 669 KVRVHGCTSL 678
C SL
Sbjct: 564 L-----CPSL 568
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 50/343 (14%), Positives = 104/343 (30%), Gaps = 74/343 (21%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN------TAFLKMTNLR 385
+ ++ I +N LK + K +L + + + N AF L
Sbjct: 307 IQIIYIGYNNLKT-FPV----ETSLQKMKKLGML-ECLY----NQLEGKLPAFGSEIKLA 356
Query: 386 LLKI-HNL--QLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDK--TLEC-NMCYRRIEQ 439
L + +N ++PA ++++ L + LK +P+ + + + Y I
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 440 FWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLV 499
+ + P N+ + L + ++ P+E+ + L
Sbjct: 417 VDGKNFDPL-DPTPFKGINVSSINLSNNQ-------ISKFPKEL--------FSTGSPLS 460
Query: 500 FLNLNDCKI-------LVRLPSTINGWKSLRTVNLSRCSKLENMPESL--GQMESLEELD 550
+NL + L L +++L KL + + + L +D
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGID 519
Query: 551 VSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610
+S + P+ S LK F + + P
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKG-------------------FGIRNQRDAQGNRTLREWP 559
Query: 611 SLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
G+ +L +L + N+ + I P L + D
Sbjct: 560 E--GITLCP--SLTQLQIGSNDIRKVNEKI--TPNISVLDIKD 596
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 31/252 (12%), Positives = 64/252 (25%), Gaps = 45/252 (17%)
Query: 332 LDVLEISFNGLKGRI-EIMRKSPEEPGKCSRLWKVADVSHVLRRN-------TAFLKMTN 383
+ ++ S+N + + P K + + L N F +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN-----LSNNQISKFPKELFSTGSP 458
Query: 384 LRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKG 443
L + + L + + K+ +D L N
Sbjct: 459 LSSINLMGNML----TEIPKNSLKDENEN--FKNTYLLTSID--LRFNK----------- 499
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
+ L T P L + L + P + + L + +
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNS-------FSKFPTQPL--NSSTL-KGFGIRNQRDA 549
Query: 504 NDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563
+ L P I SL + + + + E + ++ LD+ S
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI--TPNISVLDIKDNPNISIDLSY 606
Query: 564 FFPSRILKVYLF 575
P +Y+
Sbjct: 607 VCPYIEAGMYML 618
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 33/340 (9%), Positives = 93/340 (27%), Gaps = 63/340 (18%)
Query: 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR 436
A +++T LR + N A + E + + K+ + N+ +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSE-YAQQYKTEDLKWD-------NL--KD 250
Query: 437 IEQFWKGIKNLIRT--PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL 494
+ + P ++ + + + + + +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR-------GISGEQLKDDWQALADAPV 303
Query: 495 LTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
+ + + + + +++ K L + +LE + G L L+++
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAY 362
Query: 554 TVIRQPVPSIFFPSRILKV-YL-------FVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605
I + + + ++ + D ++ S + F ++ + +
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 606 ALMLPSLSGLCSLTEL-------------------NLKKLNLRRNNFVSL--------RG 638
+ P+ +++ + L +NL N +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 639 TINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSL 678
+ + L K L++L D R L
Sbjct: 483 NFKNTYLLTSIDLRFNK----LTKLSDDF---RATTLPYL 515
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 515 TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574
++N + ++L +P+++GQ+ LE L + + +F P I
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKGISA--N 132
Query: 575 FVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE-----LNLKKLNLR 629
D + + F ++ SD + + S S+ + L ++
Sbjct: 133 MSDEQKQKMRMHYQKT-FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 630 RNNFVSLRGTINHLPKFKHLKLDDCK 655
NN + + L K + + +
Sbjct: 192 SNNITFVSKAVMRLTKLRQFYMGNSP 217
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 32/219 (14%), Positives = 60/219 (27%), Gaps = 56/219 (25%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH----------VLRRNTAFLKM 381
+ + +S N + E S L + ++ + N F
Sbjct: 435 VSSINLSNNQISKFP------KELFSTGSPLSSI-NLMGNMLTEIPKNSLKDENENFKNT 487
Query: 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFW 441
L + + +L LSD+ R L L + +D L N +F
Sbjct: 488 YLLTSIDLRFNKL----TKLSDDFRATT-----LPYL---VGID--LSYN----SFSKFP 529
Query: 442 KGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT-ESLQKLI-------- 492
N L+ + + Q +L P I SL +L
Sbjct: 530 TQPLNS---------STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
Query: 493 ---ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS 528
++ + L++ D + S + + L
Sbjct: 581 VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/204 (11%), Positives = 58/204 (28%), Gaps = 28/204 (13%)
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS----RCSKLENMPESLGQMESLEELD 550
+ L+L R+P I L + L + ++ P+ + S E+
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 551 VSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610
++ + D + S Q G + +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 611 -SLSGLCSLTELNL--------------KKLNLRRN-NFVSLRGTINHLPKFKHLKLDDC 654
++ L L + + + N + + ++L +++ +C
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 655 KRLRSLSELPSDIKKVRVHGCTSL 678
+L++LP+ +K +
Sbjct: 260 P---NLTKLPTFLKA-----LPEM 275
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-12
Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 52/271 (19%)
Query: 457 PNLEELILDGCKRL---------QNCTSLTTL------PREIATESLQKLIELLTGLVFL 501
+LE L LD C +C + TL E + L +L + T L L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 502 NLNDCKIL----VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
N + L + +SL +V + LE + +LEE
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNED 256
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
+P + +L FP L + G S +P L +
Sbjct: 257 IGMPEKYM-----------------------NLVFPRKLCRLGLSYMGPNEMPILFPFAA 293
Query: 618 LTELNLKKLNLRRNNFVSLRGT--INHLPKFKHLKLDDC---KRLRSLSELPSDIKKVRV 672
++KL+L + I P + L+ + + L L++ +K++R+
Sbjct: 294 ----QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349
Query: 673 HGCTSLATISDALRSCNSATSRIFCINCPKL 703
+ D + C +L
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 28/245 (11%), Positives = 60/245 (24%), Gaps = 54/245 (22%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI----LVRL 512
PNL L L G R + T + ++ L L ++ + L RL
Sbjct: 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132
Query: 513 PSTINGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570
L T+ L +CS + + + ++ L + +
Sbjct: 133 AKA--RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-------------- 176
Query: 571 KVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRR 630
S + SL LN +
Sbjct: 177 ------------------------------SEKDGKWLHELAQHNTSLEVLNFYMTEFAK 206
Query: 631 NNFVSLRGTINHLPKFKHLKLDDCKR--LRSLSELPSDIKKVRVHGCTSLATISDALRSC 688
+ L + +K+ D + L + +++++ + + +
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266
Query: 689 NSATS 693
Sbjct: 267 VFPRK 271
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 34/280 (12%), Positives = 74/280 (26%), Gaps = 39/280 (13%)
Query: 453 FTGAPNLEELILDGCKRL---------QNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
+L + + + L N +K + L+ L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 504 NDCKI-LVRLPSTINGWKSLRTVNLSRCSKL-ENMPESLGQMESLEELDVSGTVIRQPVP 561
+ +P +R ++L E+ + + +LE L+ + + +
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335
Query: 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621
+ + LK + + + S GL +L +
Sbjct: 336 VLAQYCKQLK---------------RLRIERGADEQGMEDEEGLV----SQRGLIALAQG 376
Query: 622 --NLKKLNLRRNNF--VSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIK-KVRVHGCT 676
L+ + + ++ SL +L +L R +++LP D + + GC
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436
Query: 677 SLATISDALRSCNSATSRIF---CINCPKLILNWLQQYSI 713
L T P + L
Sbjct: 437 KLRRF-AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 58/319 (18%), Positives = 102/319 (31%), Gaps = 70/319 (21%)
Query: 379 LKMTNLRLLKIHNLQLPAGLESLSDELRLLQW---HGYPLKSLPSSMEMDKTLEC-NMCY 434
L+++NL L SL + L+ L LP + K+L N
Sbjct: 68 CLDRQAHELELNNLGL----SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 123
Query: 435 RRIEQFWKGIK------NLIRT-PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487
+ + ++ N + P+ + L+ + +D L LP S
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-------LKKLPDLP--PS 174
Query: 488 LQKL------------IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535
L+ + ++ L L + ++ L +LP SL ++ LE
Sbjct: 175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEE 229
Query: 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFS 595
+PE L + L + +++ P + ++ T P S
Sbjct: 230 LPE-LQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDLPE----LPQS 278
Query: 596 LMQKGSSDSMALMLPSLSGLCSLTEL--NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
L L + L+EL NL LN N SL L + L + +
Sbjct: 279 LTF--------LDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSL---EELNVSN 326
Query: 654 CKRLRSLSELPSDIKKVRV 672
K L ELP+ ++
Sbjct: 327 NK----LIELPALPPRLER 341
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 57/331 (17%), Positives = 105/331 (31%), Gaps = 72/331 (21%)
Query: 381 MTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQF 440
+L+ L + N L L L L L L+ LP ++ +++
Sbjct: 110 PQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Query: 441 WKGIKNLIR----------TPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQK 490
+L P+ P L + D L LP SL+
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-------LKKLPDLPL--SLES 219
Query: 491 L------------IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538
+ ++ L L + ++ L LP SL +N+ L ++PE
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLP---PSLEALNVRDN-YLTDLPE 274
Query: 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598
+ L+ + + + + P++ YL + + R+ SL +
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNL--------YYLNASSNEIRSLCDLPP-----SLEE 321
Query: 599 KGSSDSMALMLPSLSGLCSLTEL---------------NLKKLNLRRNNFVSLRGTINHL 643
S++ + LP+L L L NLK+L++ N +
Sbjct: 322 LNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379
Query: 644 PKFKHLKLDDCKRLRSLSELPSDIKKVRVHG 674
L L + ELP ++K++ V
Sbjct: 380 E-----DLRMNSHLAEVPELPQNLKQLHVET 405
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 67/281 (23%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH-VLRRNTAFLKMTNLRLLKIH 390
L + N LK K P+ P + + +L + L +
Sbjct: 197 LTAIYADNNSLK-------KLPDLPLSLESI----VAGNNILEELPELQNLPFLTTIYAD 245
Query: 391 NLQLPAGLESLSDELRLLQW---HGYPLKSLPSSMEMDKTLEC-NMCYRRIEQFWKGIKN 446
N L ++L D L+ L LP + L+ + + + +
Sbjct: 246 NNLL----KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301
Query: 447 L------IRT-PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLI------- 492
L IR+ D P+LEEL + K L LP L++LI
Sbjct: 302 LNASSNEIRSLCDLP--PSLEELNVSNNK-------LIELPALP--PRLERLIASFNHLA 350
Query: 493 ---ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS---------------RCSKLE 534
EL L L++ L P + LR + + L
Sbjct: 351 EVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575
P+ S+E+L ++ + P + L+ +F
Sbjct: 410 EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 56/316 (17%), Positives = 92/316 (29%), Gaps = 84/316 (26%)
Query: 381 MTNLRLLKIHNLQLPAGLESLSD-----ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYR 435
+L + N QL E L + L + LK LP +++
Sbjct: 172 PPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG---- 223
Query: 436 RIEQFWKGIKNLIRT-PDFTGAPNLEELILDGCK------RLQNCTSL-------TTLPR 481
N++ P+ P L + D + +L T LP
Sbjct: 224 ---------NNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 274
Query: 482 EIAT--------ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533
+ L EL L +LN + +I L SL +N+S KL
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI-RSLCDL---PPSLEELNVSNN-KL 329
Query: 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP 593
+P LE L S + + VP + + L V + FP
Sbjct: 330 IELPALPP---RLERLIASFNHLAE-VPELPQNLKQLHV------------EYNPLREFP 373
Query: 594 FSLMQKGSSDSMALMLPSLSGLCSLTEL-----NLKKLNLRRNNFVSLRGTINHLPKFKH 648
+ L L E+ NLK+L++ N + +
Sbjct: 374 DIPES----------VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV---ED 420
Query: 649 LKLDDCKRLRSLSELP 664
L+++ R+ E
Sbjct: 421 LRMNSE-RVVDPYEFA 435
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 89/255 (34%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIAT-ESLQ-------KLIELLTGLVFLNLNDCKI 508
P+LE L+ C SLT LP + +SL L +L L +L +++ +
Sbjct: 91 PHLESLVAS-------CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ- 142
Query: 509 LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSR 568
L +LP + L+ +++ L+ +P+ SLE + + +
Sbjct: 143 LEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPP---SLEFIAAGNNQLEE---------- 187
Query: 569 ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL------- 621
LP L L LT +
Sbjct: 188 ----------------------------------------LPELQNLPFLTAIYADNNSL 207
Query: 622 --------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVH 673
+L+ + N L + +LP + D+ L++L +LP ++ + V
Sbjct: 208 KKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVR 265
Query: 674 GCTSLATISDALRSC 688
L + + +S
Sbjct: 266 DN-YLTDLPELPQSL 279
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 49/233 (21%)
Query: 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------LTGLVFLNLNDCKILVR 511
L+E + + ++LT +P E E+++ E + + +
Sbjct: 12 FLQEPLR-------HSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 512 LPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571
+ + L+ L ++PE LE L S + + +P + + L
Sbjct: 63 SRLRDCLDRQAHELELNNL-GLSSLPELPPH---LESLVASCNSLTE-LPELPQSLKSLL 117
Query: 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL---------- 621
V +L + ++K LP L L +
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEK---------LPELQNSSFLKIIDVDNNSLKKL 168
Query: 622 -----NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKK 669
+L+ + N L + +LP + D+ L +LP
Sbjct: 169 PDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS----LKKLPDLPLS 216
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 45/278 (16%), Positives = 88/278 (31%), Gaps = 51/278 (18%)
Query: 353 PEEPGKCSRLWKVADVSHVLRRNTAFL----KMTNLRLLKIHNLQLPAGLESLSDELRLL 408
+ W+ + R L + L+++ L L + ++L ++ +L
Sbjct: 26 YADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVL 85
Query: 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNL----------IRTPDFTGAPN 458
+ L SLP + L + C R+ + +L P+
Sbjct: 86 EITQNALISLPELPASLEYL--DACDNRLSTLPELPASLKHLDVDNNQLTMLPELPA--L 141
Query: 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLI----------ELLTGLVFLNLNDCKI 508
LE + D + LT LP SL+ L EL L L+++
Sbjct: 142 LEYINADNNQ-------LTMLPELP--TSLEVLSVRNNQLTFLPELPESLEALDVSTNL- 191
Query: 509 LVRLPSTINGWKSLRTVNLS---RCSKLENMPESLGQMESLEELDVSG--------TVIR 557
L LP+ + R +++ ++PE++ ++ + + +
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251
Query: 558 QP--VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP 593
Q P P + HR + + WFP
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 42/248 (16%), Positives = 73/248 (29%), Gaps = 63/248 (25%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL 512
F+ E+ L G R + +L +E L+ L LN L L
Sbjct: 30 FSAWDKWEKQALPGENRNE----AVSLLKEC----------LINQFSELQLNRLN-LSSL 74
Query: 513 PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572
P + + + +++ L ++PE LE LD + P +
Sbjct: 75 PDNLP--PQITVLEITQN-ALISLPELPAS---LEYLDACDNRLST------LPELPASL 122
Query: 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNN 632
HL ++ MLP L L+ +N N
Sbjct: 123 ---------------KHLDV---------DNNQLTMLPELPA-------LLEYINADNNQ 151
Query: 633 FVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSAT 692
L L + L + + +L L ELP ++ + V L ++ + +
Sbjct: 152 LTMLPELPTSL---EVLSVRNN-QLTFLPELPESLEALDVST-NLLESLPAVPVRNHHSE 206
Query: 693 SRIFCINC 700
C
Sbjct: 207 ETEIFFRC 214
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 30/259 (11%)
Query: 446 NLIRT---PDFTGAPNLEELILDGCK-------RLQNCTSLTTLPREIATESLQKLIEL- 494
N +R F P L+ L L C+ Q+ + L+TL + +Q L
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL--ILTGNPIQSLALGA 95
Query: 495 ---LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE--NMPESLGQMESLEEL 549
L+ L L + + I K+L+ +N++ ++ +PE + +LE L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 154
Query: 550 DVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ------KGSSD 603
D+S I+ + + + + D + ++ F ++ + + D
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNL--SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL 663
S+ +M + GL L L R + + + L +L +++ RL L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLCNLTIEEF-RLAYLDYY 270
Query: 664 PSDIKKVRVHGCTSLATIS 682
DI + + T++++ S
Sbjct: 271 LDDIIDLF-NCLTNVSSFS 288
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 44/245 (17%), Positives = 65/245 (26%), Gaps = 63/245 (25%)
Query: 378 FLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHG---YPLKSLPSSMEMDKTLECNMCY 434
+L L+ Q P L G + LPS +D L N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD--LSRNGLS 360
Query: 435 RR--IEQFWKGIKNLIR-----------TPDFTGAPNLEELILDGCK--------RLQNC 473
+ Q G +L + +F G LE L +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 474 TSLTTL-----------PREIA-TESLQKL---------------IELLTGLVFLNLNDC 506
+L L SL+ L L L FL+L+ C
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 507 KILVRLPSTINGWKSLRTVNLSRCSKLENM-----PESLGQMESLEELDVSGTVIRQPVP 561
++ P+ N SL+ +N+S N + SL+ LD S I
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSH-----NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 562 SIFFP 566
Sbjct: 536 QELQH 540
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 58/385 (15%), Positives = 104/385 (27%), Gaps = 77/385 (20%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN------TAFLKMTNLR 385
L+ L++S N ++ + ++ + ++S L N K L
Sbjct: 151 LEHLDLSSNKIQSIY------CTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 386 LLKIHNLQL--------PAGLESLS-DELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR 436
L + N GL L L L ++ ++ + R
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 437 IEQFWKGIKNLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKL 491
+ + ++I F N+ L L E+ +
Sbjct: 264 LAYLDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL--ELVNCKFGQF 319
Query: 492 IEL-LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS--RCSKLENMPESLGQMESLEE 548
L L L L K + SL ++LS S +S SL+
Sbjct: 320 PTLKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 549 LDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM 608
LD+S + + ++ + S+ FS+
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDF---------QHSNLKQMSEFSVFLS--------- 419
Query: 609 LPSLSGL----CSLTEL---------NLKKLNLRRNNFVS--LRGTINHLPKFKHLKLDD 653
L +L L +L+ L + N+F L L L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 654 CKRLRSLSELPSDIKKVRVHGCTSL 678
C+ L +L + +SL
Sbjct: 480 CQ----LEQLSPTA----FNSLSSL 496
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 27/231 (11%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
I++ F+ NLE L L K + ++ L+ L ++ + L+L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNK-------IQSIYC----TDLRVLHQMPLLNLSLDL 184
Query: 504 NDCKILVRLPSTINGWKSLRTVNLSRCS-KLENMPESLGQMESLEELDVSGTVIR---QP 559
+ + P L + L L M + + LE + R
Sbjct: 185 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 560 VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML--PSLSGLCS 617
L + R + F+ + SS L ++ +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS----FSLVSVTIERVKD 299
Query: 618 LTEL-NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--RLRSLSELPS 665
+ + L L F L K L K S +LPS
Sbjct: 300 FSYNFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 44/196 (22%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
+ + L L L L L L+L+ C+I
Sbjct: 28 FSTKNLDLSFNP-------LRHLGSYS--------FFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 517 NGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576
L T+ L+ + + SL++L T + + LK L V
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNV 131
Query: 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL 636
+ ++ +LT NL+ L+L N S+
Sbjct: 132 -------------------------AHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQSI 164
Query: 637 -RGTINHLPKFKHLKL 651
+ L + L L
Sbjct: 165 YCTDLRVLHQMPLLNL 180
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 52/345 (15%), Positives = 100/345 (28%), Gaps = 60/345 (17%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH----VLRRNTAFLKMTNLRLL 387
L L L G L ++ +V+H + F +TNL L
Sbjct: 102 LQKLVAVETNLASLE------NFPIGHLKTLKEL-NVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 388 KIHNLQLP-------AGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLE-----CNMCYR 435
+ + ++ L + L P+ + + L N
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF--- 211
Query: 436 RIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL 495
+ G LE L + +N +L + A E L L
Sbjct: 212 --------DSLNVMKTCIQGLAGLEVHRLVLGE-FRNEGNLEKFDKS-ALEGLCNLTIEE 261
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
L +L+ L + N ++ + +L + + + L++
Sbjct: 262 FRLAYLDY----YLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCK 315
Query: 556 IRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615
Q FP+ LK + ++ + FS + S + + L LS
Sbjct: 316 FGQ------FPTLKLKSLKRLTFTSNKGGN-------AFSEVDLPSLEFLDLSRNGLSFK 362
Query: 616 CSLTEL-----NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655
++ +LK L+L N +++ L + +HL
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 35/167 (20%)
Query: 493 ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELD 550
L L+L+ + + + L+ ++LSRC +E + + L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLI 82
Query: 551 VSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610
++G I+ F L+ ++ + +
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQK---------------------LVAVETNLASLENFPIG 121
Query: 611 SLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLKLDDCK 655
L LK+LN+ N S + ++L +HL L K
Sbjct: 122 HLK--------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 38/233 (16%), Positives = 70/233 (30%), Gaps = 26/233 (11%)
Query: 453 FTGAPNLEELILDGCK-------RLQNCTSLTTLP------REIATESLQKLIELLTGLV 499
F L+ L+L L +L L I L L
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ----KTLE 132
Query: 500 FLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLE--ELDVSGTVIR 557
L L I + L+ ++ + E + ++ L+++G I
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
P F + + T++ SL D +
Sbjct: 193 GIEPGAFDSAVFQSLNF-GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV-FEG 250
Query: 618 LTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDIKK 669
L E++++ +NL+++ F ++ T + + L L LSELPS +
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH----LSELPSGLVG 299
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 29/227 (12%)
Query: 446 NLIRT---PDFTGAPNLEELILDGCK-------RLQNCTSLTTLP------REIATESLQ 489
N++ T F+ NL L L C+ Q+ L TL +A +L
Sbjct: 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102
Query: 490 KLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEEL 549
L L I ++ K+L ++ L E L+ L
Sbjct: 103 G----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158
Query: 550 DVSGTVIRQPVPSIFFP---SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
D I + L + L + + F ++ Q +
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNL-----NGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD 652
+L GL + T +L + + L + ++
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 52/326 (15%), Positives = 97/326 (29%), Gaps = 58/326 (17%)
Query: 374 RNTAFLKMTNLRLLKIHNLQL-------PAGLESLSDELRLLQWHGYPLKSLP----SSM 422
+ + +L L ++ GL +S + + + ++
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS--VESINLQKHYFFNISSNTFHCF 277
Query: 423 EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK-------RLQNCTS 475
+ L ++ + + G+ L L++L+L K N S
Sbjct: 278 SGLQEL--DLTATHLSELPSGLVGL---------STLKKLVLSANKFENLCQISASNFPS 326
Query: 476 LTTL---PREIATESLQKLIELLTGLVFLNLNDCKI--LVRLPSTINGWKSLRTVNLSRC 530
LT L E +E L L L+L+ I + L+++NLS
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF--PSRILKVYLFVDTRDHRTSSSSW 588
L E+ + LE LD++ T ++ F + + L SS
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL----SHSLLDISSE 442
Query: 589 HLWFPFSLMQK------GSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTIN 641
L+ +Q SL L L+ L L + S+ +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-----RLEILVLSFCDLSSIDQHAFT 497
Query: 642 HLPKFKHLKLDDCKRLRSLSELPSDI 667
L H+ L + L+ +
Sbjct: 498 SLKMMNHVDLSHNR----LTSSSIEA 519
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
+K F L+ L L L + L + L L LNL
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSL-------LDISSEQ--------LFDGLPALQHLNL 456
Query: 504 NDCKI---LVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQP 559
++ +++ L + LS C L ++ + ++ + +D+S +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 560 VPSIFFPSRILKVYL 574
+ + + L
Sbjct: 516 SIEALSHLKGIYLNL 530
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 47/198 (23%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
+ E L L T+ L L FL+L C+I T
Sbjct: 33 NSTECLEFSFNV-------LPTIQNTT--------FSRLINLTFLDLTRCQIYWIHEDTF 77
Query: 517 NGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575
L T+ L+ L M +L ++L+ L T I + L+ L+
Sbjct: 78 QSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE-SLY 135
Query: 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVS 635
+ S H+ ++ LP LK L+ + N
Sbjct: 136 L---------GSNHI--------------SSIKLPKGFPT-----EKLKVLDFQNNAIHY 167
Query: 636 L-RGTINHLPKFKHLKLD 652
L + ++ L + +L L+
Sbjct: 168 LSKEDMSSLQQATNLSLN 185
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 70/372 (18%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN------TAFLKMTNLR 385
+ L I N L + P P + L + N + L
Sbjct: 63 ITTLVIPDNNLT---SL----PALPPELRTLE--------VSGNQLTSLPVLPPGLLELS 107
Query: 386 LLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK 445
+ LPA L +L + L SLP + L ++ ++
Sbjct: 108 IFSNPLTHLPALPSGLC-KLWIFGNQ---LTSLPVLPPGLQEL--SVSDNQLASLPALPS 161
Query: 446 NLIR--------TPDFTGAPNLEELILDGCK---------RLQNCT----SLTTLPREIA 484
L + T L+EL + + L LT+LP
Sbjct: 162 ELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP- 220
Query: 485 TESLQKLI----------ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534
L++LI L + L L ++ + L LP + L ++++ R +L
Sbjct: 221 -SGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPMLPS---GLLSLSVYRN-QLT 274
Query: 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPF 594
+PESL + S +++ G + + Y R +S+
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334
Query: 595 SLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDC 654
L + + L+ ++ + F ++ F
Sbjct: 335 HL-----AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKA 389
Query: 655 KRLRSLSELPSD 666
+ L++L D
Sbjct: 390 QISSWLAQLAED 401
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 61/315 (19%), Positives = 94/315 (29%), Gaps = 75/315 (23%)
Query: 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFW 441
+L + L + L + L L SLP+ +TLE + ++
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVS--GNQLTSLP 97
Query: 442 KGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFL 501
L L + L L I L L L GL L
Sbjct: 98 VLPPGL---------LELSIFSNPLTHLPALPSGLCKL--WIFGNQLTSLPVLPPGLQEL 146
Query: 502 NLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP 561
+++D + L LP+ + L N +L ++P L+EL VS +
Sbjct: 147 SVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPMLPS---GLQELSVSDNQLAS--- 195
Query: 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL-CSLTE 620
P + L L LT
Sbjct: 196 ------------------------------LPTLPSE----------LYKLWAYNNRLTS 215
Query: 621 L-----NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGC 675
L LK+L + N SL + L K L + RL SL LPS + + V+
Sbjct: 216 LPALPSGLKELIVSGNRLTSLPVLPSEL---KELMVSGN-RLTSLPMLPSGLLSLSVYRN 271
Query: 676 TSLATISDALRSCNS 690
L + ++L +S
Sbjct: 272 -QLTRLPESLIHLSS 285
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 56/390 (14%), Positives = 110/390 (28%), Gaps = 71/390 (18%)
Query: 319 TLERLNKHSADEILDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAF 378
L L ++++ L G + G+ + +
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAG----LHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 379 LKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIE 438
+ + RL ++ + + G +K L + K ++
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR---- 316
Query: 439 QFWKGIKNLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTL------PREIATES 487
++ P L+ L L K + SL+ L S
Sbjct: 317 -------CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369
Query: 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE--SLGQMES 545
L L L+L+ ++ + + G + L+ ++ S L+ + E + +E
Sbjct: 370 YSDL--GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEK 425
Query: 546 LEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605
L LD+S T + IF L L + + + ++
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLN-----------------TLKMAGNSFKDNTLSNV 468
Query: 606 ALMLPSLSGL----CSLTEL---------NLKKLNLRRNNFVSL-RGTINHLPKFKHLKL 651
+L+ L C L ++ L+ LN+ NN + L N L L
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 652 DDCKRLRSLSELPSDIKKVRVHGCTSLATI 681
+ + + H SLA
Sbjct: 529 SFNR----IETSKGIL----QHFPKSLAFF 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 30/228 (13%)
Query: 448 IRTPDFTGAPNLEELILDGCK-------RLQNCTSLTTL------PREIATESLQKLIEL 494
+++ F+ L+ L L C+ L+ L + + S L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL--- 103
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM--PESLGQMESLEELDVS 552
T L L + K+ I +L+ +N++ + + P + +L +D+S
Sbjct: 104 -TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLS 161
Query: 553 GTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ------KGSSDSMA 606
I+ + R + D + + F ++ +G+ +S
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNL--SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219
Query: 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSL--RGTINHLPKFKHLKLD 652
+M L L L L + + + + L +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 69/328 (21%)
Query: 375 NTAFLKMTNLRLL-----KIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSM------- 422
+ ++ L+ L IH+ +LPA +L+ L + ++++ +
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 423 -EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPR 481
+++ +L+ ++ I+ F G L EL L G ++
Sbjct: 180 PQVNLSLDMSLN--PIDFIQDQA--------FQG-IKLHELTLRGNF-------NSSNIM 221
Query: 482 EIATESLQKLIEL-LTGLVFLNLNDCKILVRLPSTINGWKSLRT--VNLSRCSKLENMPE 538
+ ++L L L F + + +I PS + G + L+ + +
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIF--EPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279
Query: 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598
+ ++ + ++G I+ + + + + + R + L L
Sbjct: 280 KFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSI---IRCQLKQFPTLDL---PFLKS 332
Query: 599 ------KGSSDSMALMLPSLSGL---------------CSLTELNLKKLNLRRNNFVSLR 637
KGS + LPSLS L L +L+ L+L N + +
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392
Query: 638 GTINHLPKFKHLKLDDCKRLRSLSELPS 665
L + +HL L +
Sbjct: 393 ANFMGLEELQHLDFQHST----LKRVTE 416
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
K+ + F NL L L C+ L + + + L L LN+
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQ-------LEQISWGV--------FDTLHRLQLLNM 504
Query: 504 NDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEELDVSG 553
+ +L S N SL T++ S ++E +SL +++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 32/223 (14%), Positives = 57/223 (25%), Gaps = 49/223 (21%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
+ + + L L L S + L +L+L+ C+I
Sbjct: 32 SSTKNIDLSFNP-------LKILKSY----SFSNF----SELQWLDLSRCEIETIEDKAW 76
Query: 517 NGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576
+G L + L+ P S + SLE L T + LK
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK----- 131
Query: 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL---------------SGLCSLTEL 621
L + + + L +L + L L E
Sbjct: 132 ------------KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 622 --NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE 662
L++ N ++ K L L ++ +
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 53/304 (17%), Positives = 96/304 (31%), Gaps = 72/304 (23%)
Query: 381 MTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQF 440
+ ++ + ++ + G + L EL ++ +P L S + N
Sbjct: 289 LVSVTIERVKDFSYNFGWQHL--ELVNCKFGQFPTLKLKSLKRLT--FTSN--------- 335
Query: 441 WKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVF 500
P+LE L L L+ ++S L
Sbjct: 336 -----KGGNAFSEVDLPSLEFLDLSRNG-------LSFK--GCCSQSDFGTTSLKY---- 377
Query: 501 LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES--LGQMESLEELDVSGTVIRQ 558
L+L+ + + + S G + L ++ L+ M E + +L LD+S T R
Sbjct: 378 LDLSFNGV-ITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 559 PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL--- 615
IF L+ L + Q+ + L +L+ L
Sbjct: 436 AFNGIFNGLSSLE-----------------VLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 616 -CSLTEL---------NLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD------DCKRLR 658
C L +L +L+ LN+ N S+ G + L + + L C R+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538
Query: 659 SLSE 662
LS
Sbjct: 539 YLSR 542
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 50/300 (16%), Positives = 99/300 (33%), Gaps = 50/300 (16%)
Query: 446 NLIRT---PDFTGAPNLEELILDGCK-------RLQNCTSLTTLP------REIATESLQ 489
N +R F P L+ L L C+ Q+ + L+TL + +A +
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 490 KLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS-KLENMPESLGQMESLEE 548
L + L L + + I K+L+ +N++ + +PE + +LE
Sbjct: 98 GL----SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 549 LDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHL---------WFPFSLMQ- 598
LD+S I+ + + + S L F ++
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNL-----------SLDLSLNPMNFIQPGAFKEIRL 202
Query: 599 -----KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
+ + DS+ +M + GL L L R + + + L +L +++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLCNLTIEE 261
Query: 654 CKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLILNWLQQYSI 713
RL L DI + + T++++ S + + L L +
Sbjct: 262 -FRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 46/314 (14%), Positives = 89/314 (28%), Gaps = 57/314 (18%)
Query: 375 NTAFLKMTNLRLLKIHN---LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKT---- 427
+ A+ +++L L + L G S L+ L L SL +
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 428 --LECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485
+ N+ I++ F+ NLE L L K + ++
Sbjct: 129 LNVAHNL-----------IQSFKLPEYFSNLTNLEHLDLSSNK-------IQSIYC---- 166
Query: 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS-KLENMPESLGQME 544
L+ L ++ + L+L+ + + L + L L M + +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 545 SLEELDVSGTV------IRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598
LE + + + S L + F L+ + +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 599 KGSSDSMALM-LPSLSGLCSLTEL----------------NLKKLNLRRNNFVSLRGTIN 641
S S+ + + S L +LK+L N + ++
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 642 HLPKFKHLKLDDCK 655
LP + L L
Sbjct: 346 -LPSLEFLDLSRNG 358
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 50/294 (17%), Positives = 86/294 (29%), Gaps = 68/294 (23%)
Query: 375 NTAFLKMTNLRLLKI------HNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTL 428
T + L + ++ + L +S + L L + L L ++ L
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 429 ECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCT-SLTTLPR-EIATE 486
+ + F + R DF+ + L L CK Q T L +L R +
Sbjct: 278 FNCLT--NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335
Query: 487 SLQKLIEL--LTGLVFLNLNDCKI--LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ 542
L L FL+L+ + + G SL+ ++LS + M +
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG 394
Query: 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSS 602
+E LE LD + ++Q
Sbjct: 395 LEQLEHLDFQHSNLKQ-------------------------------------------- 410
Query: 603 DSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCK 655
+ S SL NL L++ + G N L + LK+
Sbjct: 411 ------MSEFSVFLSLR--NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 60/378 (15%), Positives = 102/378 (26%), Gaps = 105/378 (27%)
Query: 370 HVLRRNTAFLKMTNLRLLKIHNLQLP-------AGLESLSDELRLLQWHGYPLKSLPS-- 420
+ F +TNL L + + ++ L + L P+ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 421 ----------------SMEMDKTLECNMCYRRIEQFWKGI---KNLIRTPD---FTGAPN 458
S+ + KT + + + G + + D G N
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 459 LEELILDG---------------------CKRLQNCTSLTTLPREIATESLQKLIEL--- 494
L L + ++ + Q L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCK 315
Query: 495 --------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQME 544
L L L K S ++ SL ++LSR S +S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGN-AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 545 SLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDS 604
SL+ LD+S + + S F L+ HL F S +++ S S
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLE-----------------HLDFQHSNLKQMSEFS 415
Query: 605 MALMLPSLSGL----CSLTEL---------NLKKLNLRRNNFVS--LRGTINHLPKFKHL 649
+ L L +L L +L+ L + N+F L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 650 KLDDCKRLRSLSELPSDI 667
L C+ L +L
Sbjct: 476 DLSQCQ----LEQLSPTA 489
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 33/215 (15%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
+ + L L L L L L+L+ C+I
Sbjct: 28 FSTKNLDLSFNP-------LRHLGSYS--------FFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 517 NGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV-YL 574
L T+ L+ + ++++ + + SL++L T + + LK +
Sbjct: 73 QSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 575 ----FVDTRDHRTSSSS---WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLN 627
+ S+ HL + +Q + L L + LNL L+
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------IYCTDLRVLHQMPLLNL-SLD 183
Query: 628 LRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE 662
L N ++ + L L + ++ +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 51/329 (15%), Positives = 102/329 (31%), Gaps = 73/329 (22%)
Query: 375 NTAFLKMTNLRLL-----KIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSM------- 422
N + L+ L I + +LP +L+ L L ++S+ +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 423 -EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPR 481
++ +L+ ++ + G F L +L L N SL +
Sbjct: 176 PLLNLSLDLSLN--PMNFIQPGA--------FKE-IRLHKLTLRN-----NFDSLNVMKT 219
Query: 482 EIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS---KLENMPE 538
I + L L E+ ++ N+ + S + G +L L+++ +
Sbjct: 220 CI--QGLAGL-EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPF---- 594
+ ++ + I + V + + L + FP
Sbjct: 277 LFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLEL----------VNCKFGQFPTLKLK 325
Query: 595 SLMQKGSSDSMALMLPSLSGLCSLTELNL---------------------KKLNLRRNNF 633
SL + + + S L SL L+L K L+L N
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 634 VSLRGTINHLPKFKHLKLDDCKRLRSLSE 662
+++ L + +HL L+ +SE
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHS-NLKQMSE 413
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 45/318 (14%), Positives = 92/318 (28%), Gaps = 54/318 (16%)
Query: 374 RNTAFLKMTNLRLLKIHN---LQLPAG-LESLSDELRLLQWHGYPLKSLPSSMEMDKT-- 427
+ NL++L + + + SL L L L SL SS +
Sbjct: 42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSL 100
Query: 428 ----LECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483
L N + L T F NL+ L + + EI
Sbjct: 101 KYLNLMGN-----------PYQTLGVTSLFPNLTNLQTLRIGNVETFS----------EI 139
Query: 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQM 543
L T L L + + ++ + + + L + +
Sbjct: 140 RRIDFAGL----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 544 ESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWH-----LWFPFSLMQ 598
S+ L++ T + + S + + R + S++ L + L +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 599 KGSSDSMALMLPSL--------SGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHL 649
D L S L + + +++L++ + + L K K +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 650 KLDDCKRLRSLSELPSDI 667
+++ K + +P
Sbjct: 316 TVENSK----VFLVPCSF 329
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 48/237 (20%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI---L 509
++ ++ + ++ K + +P + L L FL+L++ +
Sbjct: 306 YSLLEKVKRITVENSK-------VFLVPCSF--------SQHLKSLEFLDLSENLMVEEY 350
Query: 510 VRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
++ + W SL+T+ LS+ ++ E L +++L LD+S S +P
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410
Query: 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSL----MQKGSSDSMALMLPSLSGL----CSLT 619
++ + L + P +L + + DS +L LP L L L
Sbjct: 411 KMRFLNL----SSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464
Query: 620 EL-------NLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD------DCKRLRSLSE 662
L L + + RN S+ G + L + + L C R+ LS
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 33/243 (13%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
I D NL+ LIL + + T+ + A SL L L
Sbjct: 41 IGHGDLRACANLQVLILKSSR-------INTIEGD-AFYSLGSLEHLDLSDNHLSSLSSS 92
Query: 495 ----LTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEE 548
L+ L +LNL + + S +L+T+ + + + SL E
Sbjct: 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152
Query: 549 LDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP----FSLMQKGSSDS 604
L++ +R R + +L + + + L +
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIH-HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211
Query: 605 MALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP 664
LP + +L + L +F L + ++ + ++ DDC L L +
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC-TLNGLGDFN 270
Query: 665 SDI 667
Sbjct: 271 PSE 273
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 46/302 (15%)
Query: 375 NTAFLKMTNLRLLKIHNLQL---PAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECN 431
+ + + ++ L +H + + +R L+ L S +
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224
Query: 432 M---CYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488
M +R + L++ + L E+ D C L ++ +
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYI--LELSEVEFDDCTLNG----LGDFNPSE-SDVV 277
Query: 489 QKLIEL-LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ-MESL 546
+L ++ + L++ + L + + + ++ + + SK+ +P S Q ++SL
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSL 336
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
E LD+S ++ + S L + ++
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAW--------------PSLQTLVLSQNHLRS------- 375
Query: 607 LMLPSLSGLCS-LTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPS 665
+ + L NL L++ RN F + + K + L L + + +
Sbjct: 376 --MQKTGEILLTLK--NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG----IRVVKT 427
Query: 666 DI 667
I
Sbjct: 428 CI 429
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 41/214 (19%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK--RLQNCTSLTTLPREIATESLQKL-IELLTGLVFL 501
N++ D L L L+ L S+ TL A ++ ++ G +
Sbjct: 68 NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETL--HAANNNISRVSCSRGQGKKNI 125
Query: 502 NLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGTVIRQP 559
L + KI + ++ ++L +++ N E ++LE L++ I
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD- 183
Query: 560 VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619
V +++ + L SS+ +A M P +T
Sbjct: 184 VKGQVVFAKLKTLDL--------------------------SSNKLAFMGPEFQSAAGVT 217
Query: 620 ELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
++LR N V + + +H L
Sbjct: 218 W-----ISLRNNKLVLIEKALRFSQNLEHFDLRG 246
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 24/129 (18%)
Query: 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL---------------LT 496
D ++ L L + + T+ S L L
Sbjct: 139 DEGCRSRVQYLDLKLNE-------IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191
Query: 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556
L L+L+ K+ + + ++L KL + ++L ++LE D+ G
Sbjct: 192 KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249
Query: 557 RQPVPSIFF 565
FF
Sbjct: 250 HCGTLRDFF 258
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 63/283 (22%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL 512
A N++EL L G L+ + + T L LNL+ +
Sbjct: 30 RQSAWNVKELDLSGNP-------LSQISAA--------DLAPFTKLELLNLSSNVL--YE 72
Query: 513 PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS-RILK 571
+ +LRT++L+ N + L S+E L + I + V + +
Sbjct: 73 TLDLESLSTLRTLDLNN-----NYVQELLVGPSIETLHAANNNISR-VSCSRGQGKKNI- 125
Query: 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQK---GSSDSMALMLPSLSGLCSLTELNLKKLNL 628
YL +++ + S +Q ++ + L+ L+ LNL
Sbjct: 126 -YL----ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD----TLEHLNL 176
Query: 629 RRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSL---------- 678
+ N ++G + K K L L K L+ + + +
Sbjct: 177 QYNFIYDVKGQVV-FAKLKTLDLSSNK----LAFMGPEF-----QSAAGVTWISLRNNKL 226
Query: 679 ATISDALRSCNSATS------RIFCINCPKLILNWLQQYSIFK 715
I ALR + C + ++ K
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 50/185 (27%)
Query: 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMES 545
++ ++ + + D + L S +++ ++LS L + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59
Query: 546 LEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605
LE L++S V+ + + S + + L +++
Sbjct: 60 LELLNLSSNVLYE-TLDLESLSTLRTLDL---------NNNY------------------ 91
Query: 606 ALMLPSLSGLCSLTEL----------------NLKKLNLRRNNFVSL-RGTINHLPKFKH 648
+ L S+ L K + L N L + ++
Sbjct: 92 ---VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 649 LKLDD 653
L L
Sbjct: 149 LDLKL 153
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/288 (18%), Positives = 99/288 (34%), Gaps = 59/288 (20%)
Query: 453 FTGAPNLEELILDGCK-------RLQNCTSLTTLPREIATESLQKLIEL----LTGLVFL 501
P L+ L L + CT+LT L + + S+QK+ L+ L
Sbjct: 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL--HLMSNSIQKIKNNPFVKQKNLITL 126
Query: 502 NLNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQP 559
+L+ + T ++L+ + LS L++ + SL++L++S I++
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 560 VPSIFFPSRILKV-YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL--- 615
P F L +L ++ L + L S+ L
Sbjct: 187 SPGCFHAIGRLFGLFL---------NNVQLGPSLTEKL-------CLELANTSIRNLSLS 230
Query: 616 -CSLTEL-----------NLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE 662
L+ NL L+L NN + + LP+ ++ L+ +
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN----IQH 286
Query: 663 LPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLILNWLQQ 710
L S +HG ++ ++ L+ + I + PK+ Q
Sbjct: 287 LFSHS----LHGLFNVRYLN--LKR-SFTKQSISLASLPKIDDFSFQW 327
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 37/223 (16%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCK 507
F L L L+ + L E L T + L+L++ +
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQ-------LGPSLTEKLCLELA-----NTSIRNLSLSNSQ 233
Query: 508 ILVRLPSTING--WKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565
+ +T G W +L ++LS + +S + LE + I+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
Query: 566 PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKK 625
++ +L S ++ S + + S L L+
Sbjct: 294 GLFNVR-----------------YLNLKRSFTKQSISLASLPKIDDFS-FQWLK--CLEH 333
Query: 626 LNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
LN+ N+ + L K+L L + SL L ++
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSF--TSLRTLTNET 374
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 50/216 (23%)
Query: 446 NLIRT---PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLN 502
N +R +FT L L + ++ L E+ + L L LN
Sbjct: 35 NQLRRLPAANFTRYSQLTSLDVGFNT-------ISKLEPEL--------CQKLPMLKVLN 79
Query: 503 LNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQPV 560
L ++ T +L ++L K++ + ++L LD+S +
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTK 137
Query: 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620
L+ L S++ + + + + +
Sbjct: 138 LGTQVQLENLQ-----------------ELLL--------SNNKIQALKSEELDIFANS- 171
Query: 621 LNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCK 655
+LKKL L N G + + + L L++ +
Sbjct: 172 -SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 60/360 (16%), Positives = 112/360 (31%), Gaps = 76/360 (21%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH---VLRRNTAFLKMTNLRLLK 388
L +L++S+N L + +L + + + + + + N+R L
Sbjct: 250 LTMLDLSYNNLNVVG------NDSFAWLPQL-EYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 389 IHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLI 448
+ + L + + + L ++ +E N I +
Sbjct: 303 LKRSFTKQSISLA----SLPKIDDFSFQWLKCLEHLN--MEDND-----------IPGIK 345
Query: 449 RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI 508
FTG NL+ L L + TSL TL E + L + L LNL KI
Sbjct: 346 S-NMFTGLINLKYLSLSN-----SFTSLRTLTNE----TFVSLA--HSPLHILNLTKNKI 393
Query: 509 LVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
+ L ++L + + + +E++ E+ +S Q + F
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLN 627
L+ L ++ + S S L NL L+
Sbjct: 454 PSLQ-----------------RLML--------RRVALKNVDSSPSPFQPLR--NLTILD 486
Query: 628 LRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVR----VHGCTSLATIS 682
L NN ++ + L K + L L L+ L + G + L ++
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNN----LARLWKHANPGGPIYFLKGLSHLHILN 542
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 43/240 (17%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH---VLRRNTAFLKMTNLRLLK 388
L+VL++ N + + + +E + +S+ + +F + +L+ L
Sbjct: 407 LEVLDLGLNEIGQEL-----TGQEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 389 IHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLI 448
+ + L ++S + PL++L L ++ I +
Sbjct: 461 LRRVAL-KNVDSSPSPFQ-------PLRNL-------TIL--DLSNNNIANINDDM---- 499
Query: 449 RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI 508
G LE L L L L + ++ L+ L LNL
Sbjct: 500 ----LEGLEKLEILDLQHNN-------LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 509 LVRLPSTINGWKSLRTVNLSRCSKLENMPES-LGQMESLEELDVSGTVIRQPVPSIFFPS 567
L+ ++L L +P S SL+ L++ +I +F P+
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 42/218 (19%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL 512
F+ +LE L L + + +E+ + + L + + L+ K L
Sbjct: 401 FSWLGHLEVLDLGLNE----------IGQELTGQEWRGL----ENIFEIYLSYNKYLQLT 446
Query: 513 PSTINGWKSLRTVNLS--RCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570
++ SL+ + L +++ P + +L LD+S I + L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 571 KVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRR 630
+ L + + + + S +L LNL
Sbjct: 507 E-----------------ILDLQHNNLARLWKHANPGGPIYFLKGLS----HLHILNLES 545
Query: 631 NNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
N F + L + K + L L+ LP+ +
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNN----LNTLPASV 579
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 45/247 (18%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL 512
NL+EL+L K + L E + + L L L+ +I
Sbjct: 141 QVQLENLQELLLSNNK-------IQALKSE-ELDIFA-----NSSLKKLELSSNQIKEFS 187
Query: 513 PSTINGWKSLRTVNLSRCSKLENMPESLG---QMESLEELDVSGTVIRQPVPSIFFPSRI 569
P + L + L+ ++ E L S+ L +S + + + F +
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 570 LK-VYLFVDTRDHRTSSSSWHLWFPFSLMQ--------KGSSDSMALMLPSLSGLCSLTE 620
L + + + W P L + SL GL ++
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSH------SLHGLFNVRY 300
Query: 621 L----NLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGC 675
L + K ++ + + + L +HL ++D + + S++ G
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND----IPGIKSNM----FTGL 352
Query: 676 TSLATIS 682
+L +S
Sbjct: 353 INLKYLS 359
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 50/209 (23%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
NL L L L + + L L + L I ++
Sbjct: 248 TNLTMLDLSYNN-------LNVVGNDS--------FAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 517 NGWKSLRTVNLSRCSKLENM---------PESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
+G ++R +NL R +++ S ++ LE L++ I ++F
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLN 627
LK SL S+ +L + SL L LN
Sbjct: 353 INLKY---------------------LSL----SNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 628 LRRNNFVSL-RGTINHLPKFKHLKLDDCK 655
L +N + + L + L L +
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNE 416
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 64/277 (23%)
Query: 453 FTGAPNLEELILDGCK-------RLQNCTSLTTL-------PREIATESLQKLIEL---- 494
F P LE L+ L ++ L + I+ SL K+ +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR-----CSKLENMPESLGQMESLEEL 549
L L LN+ D I + G +L+ ++LS + SL L L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-HSPLHIL 386
Query: 550 DVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609
+++ I + F L+ L + + L
Sbjct: 387 NLTKNKISKIESDAFSWLGHLE-----------------VLDL--------GLNEIGQEL 421
Query: 610 PSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDIK 668
L N+ ++ L N ++ L R + +P + L L L+++ PS
Sbjct: 422 TG-QEWRGLE--NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPF- 476
Query: 669 KVRVHGCTSLATISDALRSCN--SATSRIFCINCPKL 703
+L + L + N + + KL
Sbjct: 477 ----QPLRNLTILD--LSNNNIANINDDMLE-GLEKL 506
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 24/138 (17%)
Query: 444 IKNLIRTPD-FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLN 502
+KN+ +P F NL L L + + ++ +E L L L+
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNN-------IANINDDM--------LEGLEKLEILD 510
Query: 503 LNDCKI--------LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554
L + + G L +NL E E + L+ +D+
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Query: 555 VIRQPVPSIFFPSRILKV 572
+ S+F LK
Sbjct: 571 NLNTLPASVFNNQVSLKS 588
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 37/248 (14%), Positives = 70/248 (28%), Gaps = 60/248 (24%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
I + ++ G N+ E+ L K L R L+ L L L
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNK-------YLQLTRNS--------FALVPSLQRLML 461
Query: 504 NDCKI--LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP 561
+ + PS ++L ++LS + + L +E LE LD+ + + +
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LW 520
Query: 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621
P + + S L + + + L L +
Sbjct: 521 KHANPGGPIYFL--------KGLSHLHILNLESNGFDEIPVEV-------FKDLFELKII 565
Query: 622 -------------------NLKKLNLRRNNFVSLRGTI--NHLPKFKHLKLD------DC 654
+LK LNL++N S+ + L + C
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Query: 655 KRLRSLSE 662
+ +
Sbjct: 626 ESIAWFVN 633
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 33/228 (14%)
Query: 446 NLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGL 498
N+ T T + L D ++ +LT + + L + L LT L
Sbjct: 35 NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI--NFSNNQLTDITPLKNLTKL 92
Query: 499 VFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ 558
V + +N+ +I + + +L + L ++ ++ L + +L L++S I
Sbjct: 93 VDILMNNNQI--ADITPLANLTNLTGLTLFNN-QITDID-PLKNLTNLNRLELSSNTISD 148
Query: 559 PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS--LSGLC 616
+ ++ + + ++ ++ + P + + L + S +S +
Sbjct: 149 -ISALSGLTSLQQLSF-----GNQVTDLK-----PLANLTTLER----LDISSNKVSDIS 193
Query: 617 SLTEL-NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL 663
L +L NL+ L N + + L L L+ + L+ + L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGTL 239
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 52/350 (14%), Positives = 101/350 (28%), Gaps = 101/350 (28%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTNLRLLKIHN 391
L+ LE+S N + + L ++ + + +T L L I +
Sbjct: 136 LNRLELSSNTIS--------DISALSGLTSLQQL-SFGNQVTDLKPLANLTTLERLDISS 186
Query: 392 LQL--PAGLESLSDELRLLQWHGYPLKSLPSSMEMDK--TLECNMCYRRIEQFWKGIKNL 447
++ + L L+ L L + + + L N N
Sbjct: 187 NKVSDISVLAKLT-NLESLIATNNQISDITPLGILTNLDELSLN-------------GNQ 232
Query: 448 IRTPD-FTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGLV 499
++ NL +L L + L T LT L ++ + + L LT L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL--KLGANQISNISPLAGLTALT 290
Query: 500 FLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559
L LN+ ++ S I+ K+L + L + ++ + + L+ L +
Sbjct: 291 NLELNENQL--EDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKVSD- 345
Query: 560 VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619
+ SL+ L ++
Sbjct: 346 -------------------------------------------------VSSLANLTNIN 356
Query: 620 ELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKK 669
L+ N L + +L + L L+D + P + K
Sbjct: 357 W-----LSAGHNQISDLTP-LANLTRITQLGLNDQA----WTNAPVNYKA 396
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 62/243 (25%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTG 497
N I NL L L L TSL L + L L LT
Sbjct: 122 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL---SFGNQVTDLKPLANLTT 178
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
L L+++ K+ S + +L ++ + ++ ++ LG + +L+EL ++G ++
Sbjct: 179 LERLDISSNKV--SDISVLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQLK 234
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
+ ++ + + + L +++ L LSGL
Sbjct: 235 D-IGTLASLTNLTDLDL---------------------------ANNQISNLAPLSGLTK 266
Query: 618 LTEL-----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660
LTEL L L L N + I++L +L L + +
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDI 324
Query: 661 SEL 663
S +
Sbjct: 325 SPV 327
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 62/243 (25%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTG 497
N + L +++++ + L N T+LT L + + + L LT
Sbjct: 78 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL--TLFNNQITDIDPLKNLTN 135
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
L L L+ I S ++G SL+ ++ ++ + + L + +LE LD+S +
Sbjct: 136 LNRLELSSNTI--SDISALSGLTSLQQLSFGN--QVTD-LKPLANLTTLERLDISSNKVS 190
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
+ + + + S + L L +
Sbjct: 191 DI-SVLAKLTNLESLIA------TNNQISD---------------------ITPLGILTN 222
Query: 618 LTEL-----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660
L EL NL L+L N +L ++ L K LKL + + ++
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNI 280
Query: 661 SEL 663
S L
Sbjct: 281 SPL 283
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 51/361 (14%), Positives = 110/361 (30%), Gaps = 62/361 (17%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTNLRLLKIHN 391
L ++ N L R+ + P + L ++ DVS N + +T I
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVL-EILDVSG----NGWTVDITGNFSNAISK 230
Query: 392 LQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQF---WKGIKNLI 448
Q + L+ + + + +K + + + + + +
Sbjct: 231 SQAFS--LILAHHIMGAGFGFHNIKDPDQNTFA------GLARSSVRHLDLSHGFVFS-L 281
Query: 449 RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKI 508
+ F +L+ L L K + + E L L LNL+ +
Sbjct: 282 NSRVFETLKDLKVLNLAYNK-------INKIADEA--------FYGLDNLQVLNLSYNLL 326
Query: 509 LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSR 568
S G + ++L + ++ +E L+ LD+ + +I F
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPS 382
Query: 569 ILKVYLFVD--TRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL----CSLTEL- 621
I ++L + + + ++ + + ++ L +P L L +
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 622 ---------NLKKLNLRRNNFVSL------RGTINHLPKFKHLKLDDCKRLRSLSELPSD 666
+L++L L N L + L L+ L+ LP
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY----LNSLPPG 498
Query: 667 I 667
+
Sbjct: 499 V 499
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 44/259 (16%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCK-------RLQNCTSLTTL--------PREIATESL 488
I F PNL L L K Q L L +
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 489 QKLIELLTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESL---GQME 544
+ L L L+L+ +I + L + SL++++ S ++ + E Q +
Sbjct: 120 RN----LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGK 174
Query: 545 SLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDS 604
+L ++ + V + + ++ D + + + FS S
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 605 MALMLPSLSGLC---------------SLTELNLKKLNLRRNNFVSL-RGTINHLPKFKH 648
++ + G L +++ L+L SL L K
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 649 LKLDDCKRLRSLSELPSDI 667
L L K ++++ +
Sbjct: 295 LNLAYNK----INKIADEA 309
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 35/269 (13%)
Query: 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR 436
F + L+ L + + L + + G L +LP N+
Sbjct: 357 TFKFLEKLQTLDLRDNALTT--IHFIPSIPDIFLSGNKLVTLPKI---------NLTANL 405
Query: 437 IEQFWKGIKNLIRTPDFTGAPNLEELILDGCK--------RLQNCTSLTTL-------PR 481
I ++NL P+L+ LIL+ + SL L
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 482 EIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541
TE + E L+ L L LN + P + +LR ++L+ +L + +
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL 524
Query: 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF---PFSLMQ 598
+LE LD+S + P P +F L V + S + + +
Sbjct: 525 P-ANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHTNVTIA 580
Query: 599 KGSSDSMALMLPSLSGLCSLTELNLKKLN 627
+D + S SG+ SL L+ + +
Sbjct: 581 GPPADIYCVYPDSFSGV-SLFSLSTEGCD 608
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 64/389 (16%), Positives = 108/389 (27%), Gaps = 100/389 (25%)
Query: 319 TLERLNKHSADEILDVLEISFNGLKGRIEIMRKSPEEPGKCSR-LWKVADVSHVLRRNTA 377
+ + +L++L++S NG + + G S + K S +L +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGW---------TVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 378 FLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKT-LEC-NMCYR 435
+ AGL S +R L + SL S + L+ N+ Y
Sbjct: 244 GAGFGFHNIKDPDQNTF-AGLARSS--VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 436 RIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL- 494
+I + F G NL+ L L L L L K+ +
Sbjct: 301 KINKIADEA--------FYGLDNLQVLNLSYNL-------LGELYSSNFYG-LPKVAYID 344
Query: 495 ----------------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS------- 531
L L L+L D + +TI+ S+ + LS
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKI 399
Query: 532 ------------KLENMPES--LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD 577
+LEN+ L ++ L+ L ++ LF+
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 578 TRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL----CSLTEL---------NLK 624
+ + + W F L L L L L L+
Sbjct: 460 ENMLQLAWETELCWDVFE------------GLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 625 KLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
L+L N L + L +
Sbjct: 508 GLSLNSNRLTVLSHND-LPANLEILDISR 535
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 38/226 (16%), Positives = 64/226 (28%), Gaps = 30/226 (13%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCK 507
+ F L+ L L T LT I E+ + L L L+L K
Sbjct: 39 VTASSFPFLEQLQLLELGS-----QYTPLT-----IDKEAFRNL----PNLRILDLGSSK 84
Query: 508 ILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565
I P G L + L C S +++L LD+S IR F
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 566 P--SRILKVYL------FVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
+ + + V + +F + S S+ +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW----GKCMNP 200
Query: 618 LTELNLKKLNLRRNNFVSL--RGTINHLPKFKHLKLDDCKRLRSLS 661
+ L+ L++ N + N + K + L +
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 36/237 (15%), Positives = 81/237 (34%), Gaps = 33/237 (13%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSH-VLRRNTAFLKMTNLRLLKIH 390
+ L + N + L V+ ++ T +T+L L ++
Sbjct: 134 MYSLNLGANHN-------LSDLSPLSNMTGL-NYLTVTESKVKDVTPIANLTDLYSLSLN 185
Query: 391 NLQLPAGLESLSD--ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLI 448
Q+ + L+ L + + + M + + +I + NL
Sbjct: 186 YNQI-EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SPLANL- 242
Query: 449 RTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGLVFL 501
L L + + +++ T L L + + + + L L+ L L
Sbjct: 243 --------SQLTWLEIGTNQISDINAVKDLTKLKML--NVGSNQISDISVLNNLSQLNSL 292
Query: 502 NLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ 558
LN+ ++ I G +L T+ LS+ + ++ L + ++ D + VI++
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 40/243 (16%), Positives = 69/243 (28%), Gaps = 82/243 (33%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTG 497
+ + NLE L L+G + L N LT L I T + + L LT
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL--YIGTNKITDISALQNLTN 111
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
L L LN+ I S + + ++NL L + L M L L V+ + ++
Sbjct: 112 LRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK 168
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
+ ++ L
Sbjct: 169 D--------------------------------------------------VTPIANLTD 178
Query: 618 LTEL-----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660
L L +L N + + ++ + LK+ + ++ L
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDL 236
Query: 661 SEL 663
S L
Sbjct: 237 SPL 239
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 41/315 (13%), Positives = 82/315 (26%), Gaps = 94/315 (29%)
Query: 376 TAFLKMTNLRLLKIHNLQL--PAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMC 433
+ + L L I ++ + L++L+ LR L + + + + K N+
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLG 140
Query: 434 YRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESL 488
+ N+ L L + K + N T L +L + +
Sbjct: 141 ANHNLSDLSPLSNM---------TGLNYLTVTESKVKDVTPIANLTDLYSL--SLNYNQI 189
Query: 489 QKLIEL--LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL 546
+ + L LT L + +I + + L ++ + K+ ++ L + L
Sbjct: 190 EDISPLASLTSLHYFTAYVNQI-TDITP-VANMTRLNSLKIGNN-KITDLS-PLANLSQL 245
Query: 547 EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
L++ I
Sbjct: 246 TWLEIGTNQISD------------------------------------------------ 257
Query: 607 LMLPSLSGLCSLTEL-----------------NLKKLNLRRNNFVSL-RGTINHLPKFKH 648
+ ++ L L L L L L N + I L
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 649 LKLDDCKRLRSLSEL 663
L L + + L
Sbjct: 316 LFLSQNH-ITDIRPL 329
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 32/241 (13%), Positives = 68/241 (28%), Gaps = 82/241 (34%)
Query: 451 PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGLVFLNL 503
+ L L + K LQN T+L L + +++ + L LT + LNL
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDISALQNLTNLREL--YLNEDNISDISPLANLTKMYSLNL 139
Query: 504 NDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563
+ S ++ L + ++ K++++ + + L L ++ I
Sbjct: 140 GANH-NLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIED----- 191
Query: 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL-- 621
+ L+ L SL
Sbjct: 192 ---------------------------------------------ISPLASLTSLHYFTA 206
Query: 622 ---------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--RLRSLSELP 664
L L + N L + +L + L++ + + ++ +L
Sbjct: 207 YVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLT 265
Query: 665 S 665
Sbjct: 266 K 266
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 53/207 (25%)
Query: 474 TSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533
+L TLP I + L + L + T +S+ + ++ K+
Sbjct: 3 ATLATLPAPI--NQIFPD-ADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGE-KV 56
Query: 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP 593
++ + + +LE L+++G I P L +L+
Sbjct: 57 ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVK--LT-----------------NLYIG 96
Query: 594 FSLMQKGSSDSMALMLPSLSGLCSLTEL-----------------NLKKLNLRRNNFVSL 636
+ + + +L L +L EL + LNL N+ +S
Sbjct: 97 TNKITD---------ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147
Query: 637 RGTINHLPKFKHLKLDDCKRLRSLSEL 663
++++ +L + + K ++ ++ +
Sbjct: 148 LSPLSNMTGLNYLTVTESK-VKDVTPI 173
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 18/123 (14%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 442 KGIKNLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTL---PREIATESLQKLIE 493
+ +L A N+++L ++ + ++L L +++ ++ + L
Sbjct: 54 INVTDL---TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG 110
Query: 494 LLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
L T L L+++ + + IN + +++LS + + L + L+ L++
Sbjct: 111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQF 168
Query: 554 TVI 556
+
Sbjct: 169 DGV 171
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 445 KNLIRTPDFTGAPNLEELILDGC-----KRLQNCTSLTTLPREIATESLQKL--IELLTG 497
++ +L + L ++ ++ L I I L+
Sbjct: 32 QSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDL--TINNIHATNYNPISGLSN 89
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
L L + + ++G SL +++S + +++ + + + +D+S
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 42/225 (18%)
Query: 448 IRTPDFTGAPNLEELILDGCK----------RLQNCTSLTTLPREIATESLQKLIEL--L 495
+ +LE L L C L L I+ + +++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL--AISGNKISGDVDVSRC 199
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGT 554
L FL+++ +P + +L+ +++S KL + ++ L+ L++S
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN 257
Query: 555 VIRQPVPSIFFPSRILKV-YLFVDTRDHRTSSSSWHLWFPFSLMQKGSS-DSMALMLPSL 612
P+P + S L+ L + + + P L + + L
Sbjct: 258 QFVGPIPPLPLKS--LQYLSL---------AENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 613 SG-----LCSLTELNLKKLNLRRNNFVSLRGTI--NHLPKFKHLK 650
G S + L+ L L NN G + + L K + LK
Sbjct: 307 YGAVPPFFGSCS--LLESLALSSNN---FSGELPMDTLLKMRGLK 346
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 90/301 (29%)
Query: 451 PDFTGAPNLEELILDGCK-------RLQNCTSLTTLPREIATESLQKLI--ELLTGLVFL 501
P L+ L + G K + CT L L I++ I L L +L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL--NISSNQFVGPIPPLPLKSLQYL 274
Query: 502 NLNDCKILVRLPSTING-WKSLRTVNLS-------------RCSKLENM----------- 536
+L + K +P ++G +L ++LS CS LE++
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 537 -PESLGQMESLEELDVSGTVIRQPVPSIFF--PSRILKVYLFVDTRDHRTSSSSWHLWFP 593
++L +M L+ LD+S +P + +L + L SS+++
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL---------SSNNFSGPIL 385
Query: 594 FSLMQKGSSDSMALMLP--SLSG-----LCSLTELNLKKLNLRRNNFVSLRGTI----NH 642
+L Q + L L +G L + + L L+L N GTI
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNYLS---GTIPSSLGS 440
Query: 643 LPKFKHLKLD-------------DCKRLRSLS--------ELPSDIKKVRVHGCTSLATI 681
L K + LKL K L +L E+PS + CT+L I
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-----CTNLNWI 495
Query: 682 S 682
S
Sbjct: 496 S 496
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 65/404 (16%), Positives = 117/404 (28%), Gaps = 113/404 (27%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--------TAFLKMTN 383
L L++S N G + P G CS L +A L N LKM
Sbjct: 296 LTGLDLSGNHFYGAV------PPFFGSCSLLESLA-----LSSNNFSGELPMDTLLKMRG 344
Query: 384 LRLLKIH--NL--QLPAGLESLSDELRLL-----QWHGYPLKSLPSSMEMDKTLECNMCY 434
L++L + +LP L +LS L L + G + ++ C
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG----PILPNL-------CQNPK 393
Query: 435 RRIEQFWKGIKNLIRTPDFTG--------APNLEELILDGCK-------RLQNCTSLTTL 479
+++ ++ FTG L L L L + + L L
Sbjct: 394 NTLQEL------YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 480 -----------PREIATESLQKLIEL-----------------LTGLVFLNLNDCKILVR 511
P+E+ ++ L L T L +++L++ ++
Sbjct: 448 KLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 512 LPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570
+P I ++L + LS N+P LG SL LD++ + +P+ F
Sbjct: 506 IPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF---KQ 561
Query: 571 KVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRR 630
+ + + + G+ + S N+
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS----TRNPCNITS 617
Query: 631 NNFV-SLRGTINHLPKFKHLKLD-------------DCKRLRSL 660
+ T ++ L + L L
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 42/256 (16%), Positives = 78/256 (30%), Gaps = 70/256 (27%)
Query: 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN-------TAFLKMTNL 384
L+ + +S N L G I P+ G+ L + L N +L
Sbjct: 492 LNWISLSNNRLTGEI------PKWIGRLENLAIL-----KLSNNSFSGNIPAELGDCRSL 540
Query: 385 RLLKIH--NL--QLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQF 440
L ++ +PA + S ++ G ++ D + + +F
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG----KRYVYIKNDGMKKECHGAGNLLEF 596
Query: 441 WKGIKNLIRTPDFTGAPNLEELILDGC--KRLQNCTSLTTL-----------PREIATES 487
+ N+ + G N S+ L P+EI +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-- 654
Query: 488 LQKLIELLTGLVFLNL--NDCKILVRL----PSTINGWKSLRTVNLSRCSKLENM----- 536
+ L LNL N + P + + L ++LS N
Sbjct: 655 -------MPYLFILNLGHN------DISGSIPDEVGDLRGLNILDLSS-----NKLDGRI 696
Query: 537 PESLGQMESLEELDVS 552
P+++ + L E+D+S
Sbjct: 697 PQAMSALTMLTEIDLS 712
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 40/213 (18%)
Query: 446 NLIRTPDFTGAPNLEELILDGCK--RLQNCTSLTTLPREIATESLQKL-IELLTGLVFLN 502
L T D L L L+ L S+ TL A ++ ++ G +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETL--HAANNNISRVSCSRGQGKKNIY 126
Query: 503 LNDCKILVRLPSTINGWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGTVIRQPV 560
L + KI + ++ ++L ++++ N E ++LE L++ I V
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYD-V 184
Query: 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620
+++ + L SS+ +A M P +T
Sbjct: 185 KGQVVFAKLKTLDL--------------------------SSNKLAFMGPEFQSAAGVTW 218
Query: 621 LNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653
++LR N V + + +H L
Sbjct: 219 -----ISLRNNKLVLIEKALRFSQNLEHFDLRG 246
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 45/239 (18%)
Query: 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR 511
D ++ L L + + T+ +L L LNL I
Sbjct: 139 DEGCRSRVQYLDLKLNE-------IDTVNFA-------ELAASSDTLEHLNLQYNFI-YD 183
Query: 512 LPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571
+ + + L+T++LS KL M + + + + + S+ L+
Sbjct: 184 VKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240
Query: 572 V-------------------YLFVDTRDHRTSSSSWHLWFPF----SLMQKGSSDSMALM 608
V T +T +L G+ L
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 609 LPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
P L +L L+ + + L + + + + + + +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ----YRTVIDQV 355
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 31/126 (24%)
Query: 454 TGAPNLEELILDGCKRL----------QNCTSLTTL-----PREIATESLQKLIELLTGL 498
+ L+EL L C ++T L + + L L+ L
Sbjct: 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224
Query: 499 VFLNLNDC--------KILVRLPSTINGWKSLRTVNLSRCSKL-ENMPESLGQMESLEEL 549
V L+L+D + +L L+ ++LSRC + LG++ +L+ L
Sbjct: 225 VHLDLSDSVMLKNDCFQEFFQLN-------YLQHLSLSRCYDIIPETLLELGEIPTLKTL 277
Query: 550 DVSGTV 555
V G V
Sbjct: 278 QVFGIV 283
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 48/287 (16%), Positives = 87/287 (30%), Gaps = 44/287 (15%)
Query: 429 ECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488
++ + + G F + + L + I +L
Sbjct: 51 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110
Query: 489 QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMES--- 545
++ + L L+L ++ + +T+ +L +NLS CS +L + S
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCS 168
Query: 546 -LEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHL-WFPFSLMQKGSSD 603
L+EL++S + S + S +K
Sbjct: 169 RLDELNLSWC-----------------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211
Query: 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG--TINHLPKFKHLKLDDCKR----- 656
S L +L C NL L+L + + L +HL L C
Sbjct: 212 S---DLSTLVRRCP----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264
Query: 657 LRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKL 703
L L E+P+ +K ++V G T+ + INC
Sbjct: 265 LLELGEIPT-LKTLQVFGIVPDGTLQLLKEALPHLQ-----INCSHF 305
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 44/274 (16%), Positives = 81/274 (29%), Gaps = 74/274 (27%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
I D NL+ L+L + T+ + + SL L L
Sbjct: 67 ISNSDLQRCVNLQALVLTSNG-------INTIEED-SFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 495 ----LTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPE-SLGQMESLEE 548
L+ L FLNL +++ + L+ + + + + LEE
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178
Query: 549 LDVSGTVIRQPVPSIFFPSRILKV-YLFV--------DTRDHRTS------SSSWHLWFP 593
L++ + ++ P + + L + D +S + F
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
Query: 594 FSLMQKGSSDSMALMLPSLSGLCSLTEL------------------NLKKLNLRRNNFVS 635
FS + G ++ SL + + L +L RN S
Sbjct: 239 FSELSTGETN-------SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291
Query: 636 L-RGTINHLPKFKHLKLD------DCKRLRSLSE 662
+ G + L + + L C R+ LS
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 27/198 (13%)
Query: 377 AFLKMTNLRLLKIHN--LQ-LPAGL-ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNM 432
+F + +L L + L L + + LS L L G P K+L + +
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLT--KL 151
Query: 433 CYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK-------RLQNCTSLTTL------ 479
R+ I+ DF G LEEL +D L++ +++ L
Sbjct: 152 QILRVGNMDT-FTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Query: 480 ---PREIATESLQKLIEL-LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535
EI + + L L + ++ +++ + R V ++ L
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT-DESLFQ 268
Query: 536 MPESLGQMESLEELDVSG 553
+ + L Q+ L EL+ S
Sbjct: 269 VMKLLNQISGLLELEFSR 286
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 48/305 (15%), Positives = 83/305 (27%), Gaps = 64/305 (20%)
Query: 378 FLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLP-SSMEMDKTLECNMCYRR 436
+T L L +L S + L L L + S L+C++
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN--- 158
Query: 437 IEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLT 496
I D T L L K +T L +
Sbjct: 159 ---------KKITKLDVTPQTQLTTLDCSFNK-------ITELD-----------VSQNK 191
Query: 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556
L LN + I +L +N L ++ S KL + + + L D S +
Sbjct: 192 LLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPL 245
Query: 557 RQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616
+ S S++ ++ +T L L+ + + ++
Sbjct: 246 TELDVSTL--SKLTTLHC------IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297
Query: 617 SLTEL----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660
L L L L L L ++H K K L + ++
Sbjct: 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAH-IQDF 354
Query: 661 SELPS 665
S +
Sbjct: 355 SSVGK 359
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 40/251 (15%), Positives = 73/251 (29%), Gaps = 54/251 (21%)
Query: 457 PNLEELILDGCKR-------LQNCTSLTTLPREIATESLQKL--IELLTGLVFLNLNDCK 507
N + + + +LT+L + S+ + IE LTGL L
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSL--DCHNSSITDMTGIEKLTGLTKLICTSNN 75
Query: 508 ILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
I L ++ +L + KL N+ + + L L+ + + S
Sbjct: 76 I-TTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQN--P 127
Query: 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL------ 621
+ + R + + + L + + + ++ LT L
Sbjct: 128 LLTYLNC------ARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181
Query: 622 ----------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVR 671
L +LN NN L +N + L K L+E+
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNK----LTEID------- 228
Query: 672 VHGCTSLATIS 682
V T L
Sbjct: 229 VTPLTQLTYFD 239
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 53/325 (16%), Positives = 92/325 (28%), Gaps = 94/325 (28%)
Query: 380 KMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLP-SSMEMDKTLECNMCYRR 436
++ L L HN + G+E L+ L L + +L S L C+
Sbjct: 40 QLATLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTLDLSQNTNLTYLACD----- 93
Query: 437 IEQFWKGIKNLIRTPDFTGAPNLEELILDGCK----RLQNCTSLTTLPREIATESLQKL- 491
N + D T L L D K + LT L A +L ++
Sbjct: 94 --------SNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL--NCARNTLTEID 143
Query: 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDV 551
+ T L L+ + K + +L + L T++ S K+ + + Q + L L+
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNC 198
Query: 552 SGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611
I + +
Sbjct: 199 DTNNITK---------------------------------LDLNQ------------NIQ 213
Query: 612 LSGL----CSLTEL------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS 661
L+ L LTE+ L + N L ++ L K L L
Sbjct: 214 LTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL--DVSTLSKLTTLHCIQTD----LL 267
Query: 662 ELP----SDIKKVRVHGCTSLATIS 682
E+ + + + GC + +
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELD 292
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 31/188 (16%)
Query: 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR 436
F T+L+ L++ + +L SL L L +L + + + L + +
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV-EEL--DASHNS 216
Query: 437 IEQFWKGIK-----------NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485
I + NL T P L E+ L + L +
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-------LEKIMYHP-- 267
Query: 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMES 545
+ L L +++ ++ V L +L+ ++LS L ++ + Q +
Sbjct: 268 ------FVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 319
Query: 546 LEELDVSG 553
LE L +
Sbjct: 320 LENLYLDH 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 56/335 (16%), Positives = 98/335 (29%), Gaps = 100/335 (29%)
Query: 375 NTAFLKMTNLRLLKIHN---LQLPAGLESLSDELRLLQWHGYPLKSLPSSM--EMDKTLE 429
+ + N +++ N +LPA L ++ LL + ++ + + +
Sbjct: 38 GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97
Query: 430 CNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQ 489
M + I + F P L L+L+ L++LPR I +
Sbjct: 98 LYMGFNAIRYLPPHV--------FQNVPLLTVLVLERND-------LSSLPRGI-FHNTP 141
Query: 490 KLIEL-----------------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532
KL L T L L L+ ++ + ++ SL N+S
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSY--- 195
Query: 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS-RILKVYLFVDTRDHRTSSSSWHLW 591
N+ +L ++EELD S I V ILK+
Sbjct: 196 --NLLSTLAIPIAVEELDASHNSINV-VRGPVNVELTILKL------------------- 233
Query: 592 FPFSLMQKGSSDSMALMLPSLSGLCSLTEL-------------------NLKKLNLRRNN 632
+ L L E+ L++L + N
Sbjct: 234 ----------QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 633 FVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
V+L +P K L L L + +
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNH----LLHVERNQ 314
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 25/144 (17%)
Query: 446 NLIRTPDFTGAPNLEELILDGCK--RLQNCTSLTTLP------REIATESLQKLIEL--- 494
N + D + P+L + L ++ L + +L L
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234
Query: 495 ------------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ 542
GLV ++L+ ++ + + L + +S ++L +
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQP 293
Query: 543 MESLEELDVSGTVIRQPVPSIFFP 566
+ +L+ LD+S + V
Sbjct: 294 IPTLKVLDLSHNHLLH-VERNQPQ 316
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 446 NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND 505
NL T P L E+ L + L + + L L +++
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNE-------LEKIMYHP--------FVKMQRLERLYISN 287
Query: 506 CKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
++ V L +L+ ++LS L ++ + Q + LE L +
Sbjct: 288 NRL-VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 48/233 (20%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL 512
+E L L+ + + + + L + I
Sbjct: 71 LDSFRQVELLNLNDLQ-------IEEIDTYA--------FAYAHTIQKLYMGFNAIRYLP 115
Query: 513 PSTINGWKSLRTVNLSRCSKLENMPESL-GQMESLEELDVSGTVIRQPVPSIFFPSRILK 571
P L + L R L ++P + L L +S + + F + L+
Sbjct: 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQK-GSSDSMALMLPSLSGLCSLTEL--------- 621
+ +R + SL+ ++ +L +L+ ++ EL
Sbjct: 175 N---LQLSSNRLTH------VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225
Query: 622 -------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
L L L+ NN + + P + L + L ++
Sbjct: 226 VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----LEKIMYHP 273
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 46/269 (17%), Positives = 74/269 (27%), Gaps = 97/269 (36%)
Query: 453 FTGAPNLEELILDGCK-------RLQNCTSL----------TTLPREIATESLQKLIEL- 494
F A +++L + QN L ++LPR I + KL L
Sbjct: 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLS 153
Query: 495 ----------------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538
T L L L+ ++ + ++ SL N+S N+
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSY-----NLLS 205
Query: 539 SLGQMESLEELDVSGTVIRQPVPSIFFPS-RILKVYLFVDTRDHRTSSSSWHLWFPFSLM 597
+L ++EELD S I V ILK+
Sbjct: 206 TLAIPIAVEELDASHNSINV-VRGPVNVELTILKL------------------------- 239
Query: 598 QKGSSDSMALMLPSLSGLCSLTEL-------------------NLKKLNLRRNNFVSLRG 638
+ L L E+ L++L + N V+L
Sbjct: 240 ----QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 639 TINHLPKFKHLKLDDCKRLRSLSELPSDI 667
+P K L L L + +
Sbjct: 296 YGQPIPTLKVLDLSHNH----LLHVERNQ 320
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 24/152 (15%)
Query: 446 NLIRTPDFTGAPNLEELILDGCK--RLQNCTSLTTLP------REIATESLQKLIEL--- 494
N + D + P+L + L ++ L + +L L
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240
Query: 495 ------------LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ 542
GLV ++L+ ++ + + L + +S ++L +
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQP 299
Query: 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574
+ +L+ LD+S + + R+ +YL
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 331
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 75/303 (24%)
Query: 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL-----------------L 495
F P L L+L+ L++LPR I + KL L
Sbjct: 119 FQNVPLLTVLVLERND-------LSSLPRGI-FHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
T L L L+ ++ + ++ SL N+S N+ +L ++EELD S
Sbjct: 171 TSLQNLQLSSNRL-THVD--LSLIPSLFHANVSY-----NLLSTLAIPIAVEELDASHNS 222
Query: 556 IRQPVPSIFFPS---------RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606
I V + ++ + ++ ++K
Sbjct: 223 INV-VRGPVNVELTILKLQHNNLTDTAWLLNY------PGLVEVDLSYNELEKIMYHPFV 275
Query: 607 LMLPSLSGLC----SLTEL--------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDC 654
+ L L L L LK L+L N+ + + + ++L LD
Sbjct: 276 -KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334
Query: 655 KRLRSLSELPSD----IKKVRVHG----CTSLATISDALRSCNSATSRIFCINCPKLILN 706
+ L +K + + C SL + + + C + +
Sbjct: 335 S----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC-KIDYQLEH 389
Query: 707 WLQ 709
L
Sbjct: 390 GLC 392
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 45/258 (17%), Positives = 70/258 (27%), Gaps = 100/258 (38%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
I+ F +LE L L + + A L L L
Sbjct: 90 IQADTFRHLHHLEVLQLGRNS-------IRQIEVG-AFNGLASLNTLELFDNWLTVIPSG 141
Query: 495 ----LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEEL 549
L+ L L L + I N SL ++L KLE + E + + +L+ L
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201
Query: 550 DVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609
++ I+ +
Sbjct: 202 NLGMCNIK--------------------------------------------------DM 211
Query: 610 PSLSGLCSLTEL-------------------NLKKLNLRRNNFVSL-RGTINHLPKFKHL 649
P+L+ L L EL +LKKL + + + R + L L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 650 KLDDCKRLRSLSELPSDI 667
L LS LP D+
Sbjct: 272 NLAHNN----LSSLPHDL 285
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 57/196 (29%)
Query: 377 AFLKMTNLRLLKIHNLQLP-------AGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLE 429
AF ++ LR L + N + + SL L L + L+ +
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELK--KLEYISEGA------- 191
Query: 430 CNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLP---- 480
F G NL+ L L C L L L
Sbjct: 192 -----------------------FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228
Query: 481 --REIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538
EI S L+ L L + + ++ + + +G SL +NL+ L ++P
Sbjct: 229 HFPEIRPGSFHG----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283
Query: 539 S-LGQMESLEELDVSG 553
+ L EL +
Sbjct: 284 DLFTPLRYLVELHLHH 299
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 45/253 (17%), Positives = 76/253 (30%), Gaps = 90/253 (35%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
I F+G +LE+L L+ C LT++P E A L LI L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCN-------LTSIPTE-ALSHLHGLIVLRLRHLNINAIRDY 194
Query: 495 ----LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEEL 549
L L L ++ L + +L +++++ C L +P ++ + L L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFL 253
Query: 550 DVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609
++S I S+ L
Sbjct: 254 NLSYNPISTIEGSMLHE------------------------------------------L 271
Query: 610 PSLSGL----CSLTEL---------NLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD--- 652
L + L + L+ LN+ N +L + + + L LD
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 653 ---DCKRLRSLSE 662
DC RL +
Sbjct: 332 LACDC-RLLWVFR 343
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 37/239 (15%)
Query: 448 IRTPDFTGAPNLEELILDGCK-------RLQNCTSLTTLP------REIATESLQKLIEL 494
+ +F P+LEEL L+ N +L TL + I
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG---- 102
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554
L+ L L++++ KI++ L +L+++ + + + + SLE+L +
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 555 VIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614
+ L L + + + + + L L +
Sbjct: 163 NLTSIPTEALSHLHGLI-VLRLR-HLNINAIRDYSFKRLYRLKV--------LEISHWPY 212
Query: 615 LCSLTE-----LNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELPSDI 667
L ++T LNL L++ N ++ + HL + L L +S + +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP----ISTIEGSM 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 59/246 (23%), Positives = 86/246 (34%), Gaps = 68/246 (27%)
Query: 446 NLIRTPD---FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL-------- 494
N IRT + F G NL L L + LTT+P A L KL EL
Sbjct: 98 NHIRTIEIGAFNGLANLNTLELFDNR-------LTTIPNG-AFVYLSKLKELWLRNNPIE 149
Query: 495 ---------LTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPESLGQME 544
+ L L+L + K L + G +LR +NL+ C L +P +L +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLI 207
Query: 545 SLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDS 604
L+ELD+SG + P F L+ LW S +Q ++
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQ-----------------KLWMIQSQIQVIERNA 250
Query: 605 MALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD------DCKRL 657
L +L ++NL NN L L + + L +C +
Sbjct: 251 -------FDNL-----QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC-DI 297
Query: 658 RSLSEL 663
LS
Sbjct: 298 LWLSWW 303
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 44/273 (16%), Positives = 75/273 (27%), Gaps = 104/273 (38%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
I+ F +LE L L + T+ A L L L
Sbjct: 79 IKVNSFKHLRHLEILQLSRNH-------IRTIEIG-AFNGLANLNTLELFDNRLTTIPNG 130
Query: 495 ----LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEEL 549
L+ L L L + I N SLR ++L +L + E + + +L L
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190
Query: 550 DVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609
+++ +R +
Sbjct: 191 NLAMCNLR--------------------------------------------------EI 200
Query: 610 PSLSGLCSLTEL-------------------NLKKLNLRRNNFVSL-RGTINHLPKFKHL 649
P+L+ L L EL +L+KL + ++ + R ++L +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 650 KLDDCKRLRSLSELPSDIKKVRVHGCTSLATIS 682
L L+ LP D+ L I
Sbjct: 261 NLAHNN----LTLLPHDL----FTPLHHLERIH 285
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 47/191 (24%)
Query: 377 AFLKMTNLRLLKIHNLQL-------PAGLESLSDELRLLQWHGYPLKSLPSSM--EMDK- 426
AF+ ++ L+ L + N + + SL L L + L + +
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELK--RLSYISEGAFEGLSNL 187
Query: 427 ---TLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483
L NL P+ T L+EL L G L+ +
Sbjct: 188 RYLNLAMC--------------NLREIPNLTPLIKLDELDLSGNH-------LSAIRPGS 226
Query: 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES-LGQ 542
+ L L L + +I V + + +SL +NL+ L +P
Sbjct: 227 --------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277
Query: 543 MESLEELDVSG 553
+ LE + +
Sbjct: 278 LHHLERIHLHH 288
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELA 50
++ F ++ G A+ L +A+ S V++ + + WC ++
Sbjct: 38 SLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQML 87
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 39/215 (18%)
Query: 377 AFLKMTNLRLLKIHNLQL---PAGL-ESLSDELRLLQWHGYPLKSLPSSM--EMDKTLEC 430
AF + L L + QL P + ++L ELR+ H + + S+ +++ +
Sbjct: 95 AFAPLVKLERLYLSKNQLKELPEKMPKTLQ-ELRV---HENEITKVRKSVFNGLNQMIVV 150
Query: 431 NMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQK 490
+ ++ I F G L + + +TT+P+ SL +
Sbjct: 151 ELGTNPLKSSG------IENGAFQGMKKLSYIRIADTN-------ITTIPQG-LPPSLTE 196
Query: 491 L---------IEL-----LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536
L ++ L L L L+ I ++ LR ++L+ KL +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV 255
Query: 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571
P L + ++ + + I + F P
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKL--IELLTG 497
N + T NL L LD K L++ L +L + + + + L
Sbjct: 75 NKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL--SLEHNGISDINGLVHLPQ 132
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556
L L L + KI + ++ L T++L ++ ++ L + L+ L +S I
Sbjct: 133 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDN-QISDI-VPLAGLTKLQNLYLSKNHI 187
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 36/261 (13%), Positives = 80/261 (30%), Gaps = 60/261 (22%)
Query: 457 PNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKL--IELLTGLVFLNLNDCKIL 509
+ L S+ + ++ + I+ L + L LN K+
Sbjct: 21 AETIKDNLKKKSVTDAVTQNELNSIDQI--IANNSDIKSVQGIQYLPNVTKLFLNGNKL- 77
Query: 510 VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRI 569
+ K+L + L K++++ SL ++ L+ L + I + + ++
Sbjct: 78 -TDIKPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQL 133
Query: 570 LKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLR 629
+YL ++ + ++ L LT L L+L
Sbjct: 134 ESLYL---------------------------GNNK---ITDITVLSRLT--KLDTLSLE 161
Query: 630 RNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCN 689
N + + L K ++L L + L L G +L + L
Sbjct: 162 DNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRAL---------AGLKNLDVLE--L-FSQ 207
Query: 690 SATSRIFCINCPKLILNWLQQ 710
++ ++ N ++
Sbjct: 208 ECLNKPINHQSNLVVPNTVKN 228
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 40/176 (22%)
Query: 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDV 551
+ + NL + T N S+ + + ++++ + + + ++ +L +
Sbjct: 17 DDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFL 72
Query: 552 SGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611
+G + P + L + + +
Sbjct: 73 NGNKLTDIKPLTNLKN--LGWLFLDENK-----------------------------IKD 101
Query: 612 LSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--RLRSLSELPS 665
LS L L LK L+L N + G + HLP+ + L L + K + LS L
Sbjct: 102 LSSLKDLK--KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTK 154
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 24/168 (14%)
Query: 397 GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGA 456
++ + E + + E++ + I+ +GI+ L
Sbjct: 16 PDDAFA-ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYL--------- 64
Query: 457 PNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGLVFLNLNDCKIL 509
PN+ +L L+G K L N +L L + ++ L L L L L+L I
Sbjct: 65 PNVTKLFLNGNKLTDIKPLTNLKNLGWL--FLDENKIKDLSSLKDLKKLKSLSLEHNGI- 121
Query: 510 VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
+ + L ++ L K+ ++ L ++ L+ L + I
Sbjct: 122 -SDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQIS 166
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 45/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)
Query: 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR 511
F L +L L L+ ++S T L +L+L+ ++
Sbjct: 47 VFDKLTQLTKLSLSSNG-------LSFKG--CCSQSDFGT----TSLKYLDLSFNGVI-T 92
Query: 512 LPSTINGWKSLRTVNLSRCSKLENMPES--LGQMESLEELDVSGTVIRQPVPSIFFPSRI 569
+ S G + L ++ L+ M E + +L LD+S T R IF
Sbjct: 93 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 570 LKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL----CSLTEL---- 621
L+ L + Q+ + L +L+ L C L +L
Sbjct: 152 LE-----------------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 622 -----NLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE-----LPSDIKKV 670
+L+ LN+ NNF SL L + L + + + PS + +
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFL 253
Query: 671 RVHG 674
+
Sbjct: 254 NLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 36/201 (17%)
Query: 375 NTAFLKMTNLRLLKIHN---LQLPAGLESLSDELRLLQWHGYPLKSLPSS---MEMDKTL 428
+ + T+L+ L + + + + L +L L + LK + + + +
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 429 ECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRL--------QNCTSLTTLP 480
++ + + GI F G +LE L + G +LT L
Sbjct: 130 YLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 481 ------REIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534
+++ + L + L LN++ SL+ ++ S + +
Sbjct: 182 LSQCQLEQLSPTAFNSL----SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIM 236
Query: 535 NMPESL--GQMESLEELDVSG 553
+ SL L+++
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 45/196 (22%)
Query: 472 NCTS--LTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529
C S LT++P I + L L K+ + L ++LS
Sbjct: 13 RCNSKGLTSVPTGI-----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS 61
Query: 530 C--SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSS 587
S +S SL+ LD+S + + S F L+
Sbjct: 62 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE---------------- 104
Query: 588 WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKF 646
HL F S + S SL NL L++ + G N L
Sbjct: 105 -HLDF---------QHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRVAFNGIFNGLSSL 152
Query: 647 KHLKLDDCKRLRSLSE 662
+ LK+ +
Sbjct: 153 EVLKMAGNSFQENFLP 168
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 34/261 (13%), Positives = 76/261 (29%), Gaps = 24/261 (9%)
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR-LPST 515
P + + L G + + ++ + T L + L + L
Sbjct: 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125
Query: 516 INGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVIR----QPVPSIFFPSRI 569
+K+ + + LS C + + +L+ELD+ + + +
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185
Query: 570 LKVYLFVDTRDHRTSSSSWHLWFPFSLMQK---GSSDSMALMLPSLSGLCSLTELNLKKL 626
L + S+ L ++ + + + L L EL
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245
Query: 627 N--LRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDA 684
+R + + L ++ + + L L + C+ L T++
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--------YSVCSRLTTLN-- 295
Query: 685 LRSCNSATSRIFCI--NCPKL 703
L + + + CPKL
Sbjct: 296 LSYATVQSYDLVKLLCQCPKL 316
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 48/270 (17%), Positives = 83/270 (30%), Gaps = 68/270 (25%)
Query: 454 TGAPNLEELILDGCKR-----------LQNCTSLTTL-----PREIATESLQKLIELLTG 497
NL+EL L TSL +L E++ +L++L+
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557
L L LN L +L + + L + + G +L
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-------- 264
Query: 558 QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617
++ R S W + LP++ +CS
Sbjct: 265 ---------------------KELRCLSGFWDAVPAY--------------LPAVYSVCS 289
Query: 618 -LTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDC---KRLRSLSELPSDIKKVRVH 673
LT LNL ++ + V L + PK + L + D L L+ D++++RV
Sbjct: 290 RLTTLNLSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346
Query: 674 GCTSLATISDALRSCNSATSRIFCINCPKL 703
+ + + + CPKL
Sbjct: 347 PSEPF--VMEPNVALTEQGLVSVSMGCPKL 374
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 47/326 (14%), Positives = 88/326 (26%), Gaps = 87/326 (26%)
Query: 375 NTAFLKMTNLRLLKIHNLQLPAGLESLS-DELRLLQW---HGYPLKSLPSSMEMDKTLEC 430
T+F ++ +L+ LK+ + + + L L L +
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-------- 98
Query: 431 NMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQK 490
F G NLE L L C L L + L
Sbjct: 99 ----------------------FNGLANLEVLTLTQCN-LDG----AVLSGN-FFKPLTS 130
Query: 491 LIEL------------------LTGLVFLNLND-------CKILVRLPSTINGWKSLRTV 525
L L + L+L + L+ L ++
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190
Query: 526 NLSRCSKLENMPESLG---QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582
L ++ E G + S+ LD+SG ++ + FF D
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF--------------DAI 236
Query: 583 TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTI-N 641
+ L S S P L +K +L ++ +L ++ +
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296
Query: 642 HLPKFKHLKLDDCKRLRSLSELPSDI 667
H + L L + ++++ +
Sbjct: 297 HFTDLEQLTLAQNE----INKIDDNA 318
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 27/208 (12%), Positives = 60/208 (28%), Gaps = 46/208 (22%)
Query: 472 NCTSLTTLPREI--ATESLQ----KLIEL-------LTGLVFLNLNDCKILVRLPS-TIN 517
+ +T +P ++ L+ KL + L + ++ +L + + +
Sbjct: 17 QESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76
Query: 518 GWKSLRTVNLSRCSKLENMPES-LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576
L + + + + L + + +L+ L +S T I+ S L +
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDI 135
Query: 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP--SLSGLCSLTELNLKKLNLRRNNFV 634
+ + + S GL L L +N
Sbjct: 136 QDNINIHT------------------------IERNSFVGLSF----ESVILWLNKNGIQ 167
Query: 635 SLRGTINHLPKFKHLKLDDCKRLRSLSE 662
+ + + + L L D L L
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPN 195
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 446 NLIRT-PDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKL--IELLTG 497
N + NL L LD K L++ L +L + + + + L
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL--SLEHNGISDINGLVHLPQ 135
Query: 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556
L L L + KI + ++ L T++L ++ ++ L + L+ L +S I
Sbjct: 136 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDN-QISDI-VPLAGLTKLQNLYLSKNHI 190
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 32/214 (14%)
Query: 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSM--EMDKTLECNMCY 434
AF + L+ L I L +L L L+ H ++ +P + + M
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 435 RRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL--- 491
+E F G L L + K LT +P++ E+L +L
Sbjct: 157 NPLENSG------FEPGAFDG-LKLNYLRISEAK-------LTGIPKD-LPETLNELHLD 201
Query: 492 ------IEL-----LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESL 540
IEL + L L L +I + +++ +LR ++L KL +P L
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL 260
Query: 541 GQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574
++ L+ + + I + + F P
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 31/210 (14%), Positives = 54/210 (25%), Gaps = 27/210 (12%)
Query: 346 IEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTNLRLLKIHNLQLPAGLESLSDEL 405
+E E C L + N L L + + L L
Sbjct: 358 VEKSTVLQSELESCKEL------QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILD 465
+ + S + + M Y + K+L + L L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471
Query: 466 GCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTV 525
+ L LP +A L L L +D + + + L+ +
Sbjct: 472 HNR-------LRALPPALAA---------LRCLEVLQASDNAL-ENVDG-VANLPRLQEL 513
Query: 526 NLSRCSKLENMPE--SLGQMESLEELDVSG 553
L +L+ L L L++ G
Sbjct: 514 LLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 36/273 (13%), Positives = 74/273 (27%), Gaps = 33/273 (12%)
Query: 448 IRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL------------- 494
+ T D L LI+ + + L + Q+L L
Sbjct: 36 LWTSDILSLSKLRILIISHNR-------IQYLDIS-VFKFNQELEYLDLSHNKLVKISCH 87
Query: 495 -LTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVS 552
L L+L+ + + L+ + LS ++ + + + L V
Sbjct: 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147
Query: 553 GTVIRQPVPSIFFPS-RILKVYLFVDTRDHRTSSSSWHLWFPFSL--------MQKGSSD 603
G + +++ T + +L ++
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207
Query: 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL 663
+L L L+ L L + N+F+ + + H + + + K L
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT-VWYFSISNVKLQGQLDFR 266
Query: 664 PSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696
D + + +SD S IF
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 63/238 (26%)
Query: 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL----------------- 494
F P L+ L L C+ + T+ + A +SL L L
Sbjct: 47 SFFSFPELQVLDLSRCE-------IQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Query: 495 LTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLS--RCSKLENMPESLGQMESLEELDV 551
L+ L L + + L + I K+L+ +N++ + +PE + +LE LD+
Sbjct: 99 LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDL 156
Query: 552 SGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611
S I+ + + + + L + M +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPL-------------LNLSLDLSLNPMN---------FIQP 194
Query: 612 LSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD------DCKRLRSLSE 662
+ E+ LK+L L N S+ G + L + + L C R+ LS
Sbjct: 195 ----GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 248
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 445 KNLIRTP-DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNL 503
+ + GA NL EL ++ + LQ+ + L+ L EL L +
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHLQH----------LELRDLRGLGELRN----LTI 63
Query: 504 NDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
+ P + L +NLS LE++ Q SL+EL +SG
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 38/317 (11%), Positives = 97/317 (30%), Gaps = 50/317 (15%)
Query: 375 NTAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMD--KTLECNM 432
NT L + + +L ++ + + L + + N+
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254
Query: 433 CYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK--RLQNCTSLTTLPREIATESLQK 490
+ IE WK L + F +E L + + T + + ++
Sbjct: 255 TLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311
Query: 491 L----IELLTGLVF----------LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536
+ ++ L+++D + + S +N ++ +++
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSV 369
Query: 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSL 596
+ ++ L+ L + ++ + ++ + S L +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMS--------------SLETLDVSLNS 414
Query: 597 MQKGSSDSMALMLPSLSGL----CSLTEL-------NLKKLNLRRNNFVSLRGTINHLPK 645
+ + D S+ L LT +K L+L N +S+ + HL
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 646 FKHLKLDDCKRLRSLSE 662
+ L + +L+S+ +
Sbjct: 475 LQELNVAS-NQLKSVPD 490
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 53/369 (14%), Positives = 98/369 (26%), Gaps = 72/369 (19%)
Query: 375 NTAFLKMTNLRLLKIHN--LQ-LPAG-----------------LESLS----DELRLLQW 410
++ LR+L++ + ++ L L+++S LR L
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL 128
Query: 411 HGYPLKSLPSSMEMDK-------TLECN-------MCYRRIEQFWKGIKNLIRTPDFTGA 456
LP E L + + + +
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188
Query: 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTI 516
+L+ L +L S+ L L + LN +C+ L+ S +
Sbjct: 189 ESLQIPNT---TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245
Query: 517 NGWKSLRTVNLSRCSKLENMPESLGQ---MESLEELDVSGTVIRQPVPSIFFPSRILKV- 572
+L V L L Q +E L++ I + + F +
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305
Query: 573 ---YLFVDTRDHRTSSSSWHLWFP-FSLMQKGSSDSMALMLPSLSGLCSLTEL------- 621
V + S + + F ++ SD+ + + S T L
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365
Query: 622 ------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKK 669
L+ L L+RN + L+ D SL+ L S
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV----SLNSLNSHAYD 421
Query: 670 VRVHGCTSL 678
S+
Sbjct: 422 RTCAWAESI 430
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 43/218 (19%)
Query: 367 DVSHVLRRNTAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDK 426
+V+ +L +L + N+ L++ L QW LK L
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE---LQQWLKPGLKVL-------- 154
Query: 427 TLECNMCYRRIEQFWKGIKNL----------------IRTPDFTGAPNLEELILDGCKRL 470
++ + + L I P L+ L L
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--- 211
Query: 471 QNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGW-KSLRTVNLSR 529
+ T + L L L+L+ + + W L ++NLS
Sbjct: 212 ----GMETPSGVCSA-----LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262
Query: 530 CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567
L+ +P+ L L LD+S + + P
Sbjct: 263 T-GLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQ 297
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 32/143 (22%)
Query: 444 IKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL--------- 494
+ L T NL L+L L + E A + L L
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNH-------LNFISSE-AFVPVPNLRYLDLSSNHLHT 102
Query: 495 --------LTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPE----SLG 541
L L L L + I V + L+ + LS+ ++ P
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGN 160
Query: 542 QMESLEELDVSGTVIRQPVPSIF 564
++ L LD+S +++ +
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDL 183
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 83/246 (33%)
Query: 446 NLIRTPDFTGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIEL--LTGL 498
N+ T + L G +Q +L L E+ + L L LT +
Sbjct: 30 NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL--ELKDNQITDLAPLKNLTKI 87
Query: 499 VFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ 558
L L+ + + S I G +S++T++L+ ++ ++ L + +L+ L + I
Sbjct: 88 TELELSGNPL--KNVSAIAGLQSIKTLDLTST-QITDV-TPLAGLSNLQVLYLDLNQIT- 142
Query: 559 PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSL 618
+ L+GL +L
Sbjct: 143 -------------------------------------------------NISPLAGLTNL 153
Query: 619 TEL-----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--RLRS 659
L L L N + + LP + L + + +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212
Query: 660 LSELPS 665
L+ +
Sbjct: 213 LANTSN 218
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| 3jrn_A | 176 | AT1G72930 protein; TIR domain arabidopsis thaliana | 99.97 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.97 | |
| 3ozi_A | 204 | L6TR; plant TIR domain, plant protein; 2.30A {Linu | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.92 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.92 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.91 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.91 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.91 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.9 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.9 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.89 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.89 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.88 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.88 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.88 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.87 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.87 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.87 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.86 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.86 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.86 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.86 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.86 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.86 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.86 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.86 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.85 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.85 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.85 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.85 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.85 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.84 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.84 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.84 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.84 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.84 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.83 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.83 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.83 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.83 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.82 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.82 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.82 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.82 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.81 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.8 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.79 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.79 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.79 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.78 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.77 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.77 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.77 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.77 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.76 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.76 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.75 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.75 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.75 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.74 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.73 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.73 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.73 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.73 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.72 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.71 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.7 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.7 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.67 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.66 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.66 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.64 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.61 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.61 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.6 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.6 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.56 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.55 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.55 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.55 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.54 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.54 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.53 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.53 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.53 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.53 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.52 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.52 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.51 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.51 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.5 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.5 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.49 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.48 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.48 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.47 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.45 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.45 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.42 | |
| 3h16_A | 154 | TIR protein; bacteria TIR domain, signaling protei | 99.41 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.41 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.35 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.35 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.35 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.31 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.29 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.27 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.27 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.27 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.27 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.25 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.23 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.21 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.21 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.2 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.2 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.15 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.11 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.09 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.08 | |
| 3ub2_A | 146 | TOLL/interleukin-1 receptor domain-containing ADA | 99.08 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.96 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.95 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.95 | |
| 1fyx_A | 149 | TOLL-like receptor 2; beta-alpha-beta fold, signal | 98.94 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.94 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.91 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.89 | |
| 2j67_A | 178 | TOLL like receptor 10; TIR, IL-1, TLR10, membrane, | 98.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.79 | |
| 1t3g_A | 159 | X-linked interleukin-1 receptor accessory protein- | 98.78 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.77 | |
| 2js7_A | 160 | Myeloid differentiation primary response protein M | 98.76 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.61 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.61 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.61 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.54 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 98.37 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.3 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.23 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.18 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 98.1 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 98.07 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.07 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 98.02 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.99 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.94 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.93 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.83 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.78 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.7 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 97.63 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.62 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.62 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.6 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.49 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.24 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.23 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 96.79 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 96.72 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.66 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 96.51 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.24 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.1 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.01 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 95.93 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.87 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.16 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.95 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.94 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.88 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.62 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.17 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.15 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.09 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 93.24 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 93.06 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.05 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 92.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 92.88 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.85 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 92.55 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 92.54 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 92.36 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.04 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 92.03 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 91.9 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 90.0 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 88.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 88.03 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 88.01 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 87.3 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 84.4 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 84.27 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 83.4 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 83.16 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 82.81 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 81.25 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 81.17 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 80.75 |
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=251.71 Aligned_cols=121 Identities=47% Similarity=0.687 Sum_probs=98.6
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||+||+||+++++|+.|+++|.+||++|+++|||||+|||+|+||++||++| |++||+|+|
T Consensus 36 gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g 115 (176)
T 3jrn_A 36 SIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115 (176)
T ss_dssp TCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCT
T ss_pred CCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccC
Confidence 8999999989999999999999999999999999999999999999999998 999999999
Q ss_pred hHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccChhHHHHHHHHHHhhhhccCCCcc
Q 047161 62 SFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVKEISRKKGPRTL 124 (720)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~ 124 (720)
+|++||.+|+++ .+.+++++||+||++||+++||++. ++|+++|++||++|.++++++++
T Consensus 116 ~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 116 VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHHHHHHHHHHHTTCC----
T ss_pred cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999987 5679999999999999999999984 67999999999999999987654
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=287.81 Aligned_cols=236 Identities=17% Similarity=0.172 Sum_probs=182.6
Q ss_pred cccchhHHHHHHhhhcc-CCCeEEEEEecCCCc---------------------------cccch--hcHHHHHHHHHHh
Q 047161 131 VEMNSRLKKLRLLLDAE-SRDVRMIGICGMGGV---------------------------ELSEK--DGLIALQKQLLSK 180 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~-~~~~~vi~I~G~gGi---------------------------~vs~~--~~~~~~~~~il~~ 180 (720)
|||+.++++|.++|..+ ..+++||+||||||| ++++. ++...++++|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999654 456899999999999 22333 3688899999998
Q ss_pred hhhccc-cee-----ccchhhHHHHHHHHhcC-CeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhcc-c
Q 047161 181 TLMEID-IEI-----RNDFDGIKMIKRELRRR-NVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLR-V 252 (720)
Q Consensus 181 ~~~~~~-~~~-----~~~~~~~~~l~~~l~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-~ 252 (720)
+..... ... .+...++..+++.|++| ||||||||||+.+++ .+.. .+||+||||||++.|+..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 643321 111 12334588999999996 999999999999875 2221 27999999999999999886 4
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHh-hhhcCCchhH
Q 047161 253 DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLE-RLNKHSADEI 331 (720)
Q Consensus 253 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~-~l~~~~~~~i 331 (720)
..+|+|++|+.+|||+||.++||....++++.+++.+|+++|+|+||||+++|+.|+.++. +|...+. .++..+..++
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i 363 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGV 363 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTT
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHH
Confidence 5789999999999999999999976435788899999999999999999999999988743 2333333 4444356778
Q ss_pred HHHHHhhhcCCchh----hh-----------hhhcCCCCCCCccccchhh--hhHHHHh
Q 047161 332 LDVLEISFNGLKGR----IE-----------IMRKSPEEPGKCSRLWKVA--DVSHVLR 373 (720)
Q Consensus 332 l~~L~lSyn~L~~~----~~-----------~~~~~p~~~~~l~~Lw~~~--~~~~~~~ 373 (720)
..+|.+||++|+.+ +. ||+.||+++.--+++|+++ |++....
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNE 422 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC------
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCC
Confidence 99999999999876 55 9999998876558999999 7776543
|
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-31 Score=246.29 Aligned_cols=118 Identities=36% Similarity=0.712 Sum_probs=111.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc--------------------Cccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------------------PTVVRKQT 60 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i--------------------p~~vr~~~ 60 (720)
||+||+|++++++|+.|.++|.+||++|+++|||||+|||+|.||++||++| |++||+|+
T Consensus 63 GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~ 142 (204)
T 3ozi_A 63 KIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142 (204)
T ss_dssp TCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC
T ss_pred CCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc
Confidence 8999999989999999999999999999999999999999999999999998 99999999
Q ss_pred chHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccC-hhHHHHHHHHHHhhhhccC
Q 047161 61 RSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD-RHEVEFIQEIVKEISRKKG 120 (720)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~-~~e~~~i~~i~~~i~~~~~ 120 (720)
|+|++||.+|++++ +.+++++||+||++||+++||++.+ ..|+++|++|+++|+++++
T Consensus 143 g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 143 GCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201 (204)
T ss_dssp TTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999875 4589999999999999999999988 5688999999999998764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-26 Score=264.84 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=58.2
Q ss_pred ccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCc-c--cccceEeeecCcccccchhhccCchhHhhhhhhc
Q 047161 623 LKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL-P--SDIKKVRVHGCTSLATISDALRSCNSATSRIFCI 698 (720)
Q Consensus 623 L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-p--~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~ 698 (720)
|+.|+|++|+++ .+|.+++++++|+.|+|++|..-..+|.- . ++|+.|++++|..-+.+|..+.++++|+.+++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 367888888887 67888888888888888888655456532 1 5688888888877778888888888888877776
Q ss_pred c
Q 047161 699 N 699 (720)
Q Consensus 699 n 699 (720)
|
T Consensus 714 N 714 (768)
T 3rgz_A 714 N 714 (768)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=256.69 Aligned_cols=333 Identities=13% Similarity=0.130 Sum_probs=259.0
Q ss_pred HHHHHhhhcCCchh-----------hhhhhcCCCCCC--CccccchhhhhHHHHhcC--cchhccCCcceEEEeccc-cC
Q 047161 332 LDVLEISFNGLKGR-----------IEIMRKSPEEPG--KCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQ-LP 395 (720)
Q Consensus 332 l~~L~lSyn~L~~~-----------~~~~~~~p~~~~--~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-l~ 395 (720)
++.|++++|.+.+. ....+..|..++ .+.+|..+....+.+.+. ..|.++++|+.|++++|. +.
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 56788999999883 000011388888 888888887766665543 378899999999999987 43
Q ss_pred -----CcccCc-----cccceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 396 -----AGLESL-----SDELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 396 -----~~~~~l-----~~~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..+..+ ...++.|++++|.+..+|. .+ ...++..|++++|.+.. .+|.++.+++|++|
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g---------~ip~~~~l~~L~~L 358 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---------KLPAFGSEIKLASL 358 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE---------ECCCCEEEEEESEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc---------chhhhCCCCCCCEE
Confidence 333333 2569999999999999998 55 45788999999887651 23467888899999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCC-CcEEeccCCCCCcccCCCCCCCC--CCCEEeccCCCCCcccCcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTG-LVFLNLNDCKILVRLPSTINGWK--SLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~-L~~L~Ls~n~~~~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~ 539 (720)
++++|. +..+|.. ++.+++ |++|++++|.+. .+|..++.++ +|++|++++|.+.+..|..
T Consensus 359 ~L~~N~-------l~~lp~~---------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 359 NLAYNQ-------ITEIPAN---------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECCSSE-------EEECCTT---------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred ECCCCc-------cccccHh---------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 999987 5677777 888998 999999999854 8998887755 8999999999988888888
Q ss_pred cC-------CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc-------cccccccCCCCcc
Q 047161 540 LG-------QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF-------PFSLMQKGSSDSM 605 (720)
Q Consensus 540 ~~-------~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-------~l~~l~l~~~~~~ 605 (720)
+. .+++|++|++++|.+..+|+..+..+++|+.|++++|.+..++...+.... .++.++++.+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 88 888999999999999988888777668999999999999987777766554 8888999888776
Q ss_pred cccCCCCC--CCCCCCcccccEEECCCCCCccccccccCCCCCceeecccc------ccccccCCc---ccccceEeeec
Q 047161 606 ALMLPSLS--GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDC------KRLRSLSEL---PSDIKKVRVHG 674 (720)
Q Consensus 606 ~~~~~~l~--~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c------~~L~~lp~l---p~~L~~L~l~~ 674 (720)
. .+..+. .+++| +.|+|++|.++.+|..+.++++|+.|+|++| .....+|.- .++|+.|++++
T Consensus 502 ~-lp~~~~~~~l~~L-----~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 502 K-LSDDFRATTLPYL-----VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp B-CCGGGSTTTCTTC-----CEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred c-cChhhhhccCCCc-----CEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 2 222344 77776 7888999999999999999999999999654 334455531 15699999998
Q ss_pred CcccccchhhccCchhHhhhhhhcc
Q 047161 675 CTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 675 c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
|.. +.+|..+. ++|+.|++.+|
T Consensus 576 N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 576 NDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp SCC-CBCCSCCC--TTCCEEECCSC
T ss_pred CcC-CccCHhHh--CcCCEEECcCC
Confidence 875 88987765 78888777766
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=244.83 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=54.9
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCC----cccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPA----GLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~----~~~~l~~~l 405 (720)
++.|++|+|.+.... |..+..+.+|..++...+.+... ..|+++++|++|++++|.+.. .+.. ...+
T Consensus 59 L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~-l~~L 131 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIH------EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTL 131 (606)
T ss_dssp CSEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT-CTTC
T ss_pred ceEEECCCCccceeC------hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhcc-CCcc
Confidence 445556666555443 55555555555555544444332 246666666666666665532 1222 2346
Q ss_pred eEEEecCCCCCCC--CCCCCCCcceEeeCCCCchh
Q 047161 406 RLLQWHGYPLKSL--PSSMEMDKTLECNMCYRRIE 438 (720)
Q Consensus 406 ~~L~~~~~~~~~l--p~~~~~~~l~~L~l~~~~i~ 438 (720)
+.|++++|.+..+ |..+...+++.|++++|.+.
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 6677776666654 44455566666666666554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=250.08 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=117.1
Q ss_pred chhccCCcceEEEeccccCC---------------------ccc--CccccceEEEecCCC-CCCCCCCCC-CCcceEee
Q 047161 377 AFLKMTNLRLLKIHNLQLPA---------------------GLE--SLSDELRLLQWHGYP-LKSLPSSME-MDKTLECN 431 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~---------------------~~~--~l~~~l~~L~~~~~~-~~~lp~~~~-~~~l~~L~ 431 (720)
.|+++++|+.|++++|.+.. .+. .+ ..++.|++++|. ...+|..+. ..+++.|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 57889999999999986644 222 33 459999999887 567887664 67899999
Q ss_pred CCCCc-hhH--Hhhhcc--------------------CccccCC---CCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 432 MCYRR-IEQ--FWKGIK--------------------NLIRTPD---FTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 432 l~~~~-i~~--l~~~~~--------------------~l~~~~~---~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+++|+ +.. +..... .+..+|. ++.+++|+.|+|++|. +..+| .
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-------l~~lp-~--- 590 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-------VRHLE-A--- 590 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-------CCBCC-C---
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-------cccch-h---
Confidence 99987 543 322211 2223333 4555555555555554 23333 2
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC-CCEEeccCCCCCcccCcCcCCCCC--CCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS-LRTVNLSRCSKLENMPESLGQMES--LEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~~~~L~~--L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|+.|+|++|.+. .+|..++++++ |++|+|++|.+. .+|..+..++. |+.|++++|.+.+.+|.
T Consensus 591 ------~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 591 ------FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp ------CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ------hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 555555566666555533 55555555555 666666555433 55554444432 55555555555444332
Q ss_pred ccC-----CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 563 IFF-----PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 563 ~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
+.. .+.+|+.|++++|.+..++...+..+..|+.++++.+.+.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 220 0134555555555555444444444555555555554443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=265.58 Aligned_cols=234 Identities=18% Similarity=0.236 Sum_probs=179.6
Q ss_pred ccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCcc---------------------------ccc--hhcHHHH
Q 047161 123 TLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVE---------------------------LSE--KDGLIAL 173 (720)
Q Consensus 123 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~---------------------------vs~--~~~~~~~ 173 (720)
.+.....+|||++++++|.++|...++++++|+|+||||++ +++ ..+....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34456779999999999999997767889999999999991 112 1223334
Q ss_pred HHHHHHhhhhccc---ceeccchhhHHHHHHHHhcC--CeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 174 QKQLLSKTLMEID---IEIRNDFDGIKMIKRELRRR--NVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 174 ~~~il~~~~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
.+.++..+..... ....+.+.....++..+.+| ||||||||||+.++|+.+ ++|||||||||++.|+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 4555555322211 11234455666777777666 999999999999887764 68999999999999995
Q ss_pred h-ccccceEecCC-CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhcC
Q 047161 249 T-LRVDGVYKVEK-LDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKH 326 (720)
Q Consensus 249 ~-~~~~~~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~~ 326 (720)
. ++..+.|++++ |+.+||++||...++.. .+++.+.+++|+++|+|+||||+++|+.|+.+. ..|+..++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 5 56678999996 99999999999998654 234456789999999999999999999998865 5799998877543
Q ss_pred C-----------chhHHHHHHhhhcCCchh----hhhhhcCCCCCC----Cccccchhh
Q 047161 327 S-----------ADEILDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 327 ~-----------~~~il~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
. ...+..+|++||+.|+.. +.+++.||++.. .+..+|.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 2 246899999999999988 778999998753 567777643
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=259.54 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=164.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCCcccC-ccccceEE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPAGLES-LSDELRLL 408 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~-l~~~l~~L 408 (720)
++.|++++|.+.+.. |. ++.+..|..++...+.+.+. ..|..+++|+.|++++|.+...+.. ....++.|
T Consensus 202 L~~L~Ls~n~l~~~~------~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGI------PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CCEEECCSSCCCSCC------CB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCEEECcCCcCCCCC------cc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 445566666665442 33 55555555555444444332 2566677777777777655321111 22446777
Q ss_pred EecCCCCC-CCCCCCCC--CcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCc-ccCccch
Q 047161 409 QWHGYPLK-SLPSSMEM--DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLT-TLPREIA 484 (720)
Q Consensus 409 ~~~~~~~~-~lp~~~~~--~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~ 484 (720)
++++|.+. .+|..+.. .++++|++++|.+... .++.|+.+++|++|++++|. +. .+|...
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--------~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~- 338 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA--------VPPFFGSCSLLESLALSSNN-------FSGELPMDT- 338 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC--------CCGGGGGCTTCCEEECCSSE-------EEEECCHHH-
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc--------cchHHhcCCCccEEECCCCc-------ccCcCCHHH-
Confidence 77777665 66665532 5677777777665422 12235666677777777665 11 222211
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC-CCCEEeccCCCCCcccCcCcCC--CCCCCEEeccCcccccCCc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK-SLRTVNLSRCSKLENMPESLGQ--MESLEELDVSGTVIRQPVP 561 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~~--L~~L~~L~L~~n~l~~~~~ 561 (720)
++.+++|++|++++|.+.+.+|..+++++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|
T Consensus 339 -------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 339 -------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp -------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred -------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 44455555555555554445555555544 5555555555444444444443 4455555555555544444
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-cccccc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i 640 (720)
..+..+++|+.|++++|.+.+..+..+..+..++.+.+..+......+..+..+++| +.|++++|.++ .+|.++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-----~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL-----ETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-----CEEECCSSCCCSCCCGGG
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc-----eEEEecCCcccCcCCHHH
Confidence 333333555555555555544444445555555555554444433333334444443 34444444444 344444
Q ss_pred cCCCCCceeeccccccccccCCcc---cccceEeeecCcccccchhhccCchhHhhhhhh
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATISDALRSCNSATSRIFC 697 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~ 697 (720)
.++++|+.|+|++|+....+|... ++|+.|++++|...+.+|..+.++++|+.+++.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 445555555555544322333211 334455555544444444444444444444443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=243.32 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=208.2
Q ss_pred chhccCCcceEEEeccccCC---------------------ccc--CccccceEEEecCCCC-CCCCCCCC-CCcceEee
Q 047161 377 AFLKMTNLRLLKIHNLQLPA---------------------GLE--SLSDELRLLQWHGYPL-KSLPSSME-MDKTLECN 431 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~---------------------~~~--~l~~~l~~L~~~~~~~-~~lp~~~~-~~~l~~L~ 431 (720)
.|+++++|++|++++|.+.. .+. .+ ..++.|++++|.+ ..+|..+. ..+++.|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 58889999999999986544 333 33 4599999999875 57887775 67899999
Q ss_pred CCCCc-hhH--Hhhhcc-------------------CccccCC---CCCCCCceeeecCCCCCCCCCCCCc-ccCccchh
Q 047161 432 MCYRR-IEQ--FWKGIK-------------------NLIRTPD---FTGAPNLEELILDGCKRLQNCTSLT-TLPREIAT 485 (720)
Q Consensus 432 l~~~~-i~~--l~~~~~-------------------~l~~~~~---~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~~ 485 (720)
+++|+ +.. +..... .+..+|. ++.+++|++|++++|. +. .+| .
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~--- 348 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-A--- 348 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-------CEEECC-C---
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-------Cccchh-h---
Confidence 99997 553 322211 2223333 5555566666666555 33 445 3
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC-CCEEeccCCCCCcccCcCcCCCC--CCCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS-LRTVNLSRCSKLENMPESLGQME--SLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|++|++++|.+ ..+|..++++++ |++|++++|.+. .+|..++.++ +|++|++++|.+.+..|.
T Consensus 349 ------~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 349 ------FGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ------CEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ------hCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 66677777777777763 367777777777 777777777544 6777666544 777777777777775554
Q ss_pred ccC-------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC-CCCcc-cccEEECCCCCC
Q 047161 563 IFF-------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC-SLTEL-NLKKLNLRRNNF 633 (720)
Q Consensus 563 ~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~-~L~~L-~L~~L~Ls~n~l 633 (720)
.+. .+.+|+.|++++|.+..++...+..+..++.+++..+.........+..+. .++.+ +|+.|+|++|.+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 443 336777777777777776666666677777777777766522221222221 00000 348899999999
Q ss_pred cccccccc--CCCCCceeeccccccccccCCcc---cccceEeee------cCcccccchhhccCchhHhhhhhhcccc
Q 047161 634 VSLRGTIN--HLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVH------GCTSLATISDALRSCNSATSRIFCINCP 701 (720)
Q Consensus 634 ~~lp~~i~--~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~------~c~~L~~lp~~~~~~~~L~~l~~~~nc~ 701 (720)
+.+|..+. .+++|+.|+|++|+ +..+|.-. ++|+.|+++ ++...+.+|..+.++++|+.|++.+|--
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99998887 99999999999995 55566422 679999995 4556788999999999999988876643
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=251.93 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=250.8
Q ss_pred HHHHHhhhcCCchhhh-----------hhhcCCCCCC--CccccchhhhhHHHHhcC--cchhccCCcceEEEeccc-cC
Q 047161 332 LDVLEISFNGLKGRIE-----------IMRKSPEEPG--KCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQ-LP 395 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~-----------~~~~~p~~~~--~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-l~ 395 (720)
++.|++++|.|.+..+ .....|..++ .+.+|..+....+.+.+. ..|.++++|+.|++++|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 5778999999988200 0011388877 888888887776655443 478999999999999997 43
Q ss_pred -----CcccCcc------ccceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 396 -----AGLESLS------DELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 396 -----~~~~~l~------~~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
..+..+. ..++.|++++|.+..+|. .+ ...++..|++++|.+.. +|.|+.+++|+.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~----------lp~~~~L~~L~~ 599 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----------LEAFGTNVKLTD 599 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB----------CCCCCTTSEESE
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc----------chhhcCCCcceE
Confidence 3333322 369999999999999998 55 46789999999987753 357899999999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCC-CcEEeccCCCCCcccCCCCCCCCC--CCEEeccCCCCCcccCc
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTG-LVFLNLNDCKILVRLPSTINGWKS--LRTVNLSRCSKLENMPE 538 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~-L~~L~Ls~n~~~~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~ 538 (720)
|+|++|. +..+|.. ++.+++ |++|+|++|.+ ..+|..++.++. |++|++++|.+.+.+|.
T Consensus 600 L~Ls~N~-------l~~lp~~---------l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 600 LKLDYNQ-------IEEIPED---------FCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EECCSSC-------CSCCCTT---------SCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EECcCCc-------cccchHH---------HhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 9999998 5677776 788888 99999999985 488988877755 99999999987776553
Q ss_pred ---CcC--CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc-------cccccccCCCCccc
Q 047161 539 ---SLG--QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF-------PFSLMQKGSSDSMA 606 (720)
Q Consensus 539 ---~~~--~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-------~l~~l~l~~~~~~~ 606 (720)
.++ .+++|+.|++++|.+..+|+..+..+++|+.|++++|.+..++...+.... .|+.+++..+.+..
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 233 445899999999999988887775568999999999988877776665443 78888888887662
Q ss_pred ccCCCCC--CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc------cccccCC-c--ccccceEeeecC
Q 047161 607 LMLPSLS--GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK------RLRSLSE-L--PSDIKKVRVHGC 675 (720)
Q Consensus 607 ~~~~~l~--~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~------~L~~lp~-l--p~~L~~L~l~~c 675 (720)
.+..+. .+++| +.|+|++|.++.+|..+.++++|+.|+|++|+ ....+|. + .++|+.|++++|
T Consensus 743 -lp~~l~~~~l~~L-----~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 743 -LSDDFRATTLPYL-----SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp -CCGGGSTTTCTTC-----CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred -chHHhhhccCCCc-----CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 222344 67766 77888899888888888889999999997743 3444442 1 156888999888
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
.. +.+|..+. ++|+.|++++|
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSC
T ss_pred CC-CccCHhhc--CCCCEEECCCC
Confidence 65 88887654 57887777655
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=242.68 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=162.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCc--------------------------cccchhcHHHHHHHHHHhh
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV--------------------------ELSEKDGLIALQKQLLSKT 181 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi--------------------------~vs~~~~~~~~~~~il~~~ 181 (720)
+..|||+.++++|.++|.. .++++||+|+||||+ ++++.++...+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~-~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHH-CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhc-cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999864 245899999999999 2344455556666665542
Q ss_pred hhcc-----cce-----eccchhhHHHHHHHH---hcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 182 LMEI-----DIE-----IRNDFDGIKMIKREL---RRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 182 ~~~~-----~~~-----~~~~~~~~~~l~~~l---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
.... ..+ ..+.+.....+++.| .+||+||||||||+.++|+.+. +|||||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 1110 000 112334566777766 6799999999999999998762 7999999999999997
Q ss_pred hccccceEecC------CCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCC--CHHHHHHHH
Q 047161 249 TLRVDGVYKVE------KLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGR--SVDGWRSTL 320 (720)
Q Consensus 249 ~~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k--~~~~W~~~l 320 (720)
.+.....|+++ +|+.+|||+||+++ |+.. ..++..++ |+|+||||+++|+.|+++ +.++|+..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-
Confidence 66555578888 99999999999998 4322 12333343 999999999999999986 77889763
Q ss_pred hhhhcCCchhHHHHHHhhhcCCchh-----hhhhhcCCCCCC----Cccccchhh
Q 047161 321 ERLNKHSADEILDVLEISFNGLKGR-----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 321 ~~l~~~~~~~il~~L~lSyn~L~~~-----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
....+..+|++||+.|+.. +.+++.||++.. .+..+|.++
T Consensus 351 ------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 351 ------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp ------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred ------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCC
Confidence 3578999999999999876 468999998653 467888866
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=219.47 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=173.2
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCC-------------cceEEEeccccCC
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTN-------------LRLLKIHNLQLPA 396 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~-------------L~~L~l~~~~l~~ 396 (720)
++.|.+++|.+ +.. |..++++.+|..++...+.+.+. ..++++.+ ++.|+++++.+..
T Consensus 13 L~~L~l~~n~l-~~i------P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEM------PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred chhhhcccCch-hhC------ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 34455555555 232 55555555555555444444321 12333322 3555555555432
Q ss_pred cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhh----------hccCccccCCCCCCCCceeeecCC
Q 047161 397 GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWK----------GIKNLIRTPDFTGAPNLEELILDG 466 (720)
Q Consensus 397 ~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~----------~~~~l~~~~~~~~l~~L~~L~L~~ 466 (720)
+...+..++.|++++|.++.+|... .+++.|++++|.+..+.. ..+.+..+|.|+.+++|++|++++
T Consensus 86 -lp~~~~~L~~L~l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 86 -LPELPPHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162 (454)
T ss_dssp -CCSCCTTCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred -CCCCcCCCCEEEccCCcCCcccccc--CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCC
Confidence 2223444555555555555555432 344444444443332211 111233456788889999999998
Q ss_pred CCCCCCC----CCCcccC--ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCc
Q 047161 467 CKRLQNC----TSLTTLP--REIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESL 540 (720)
Q Consensus 467 ~~~l~~~----~~L~~lp--~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 540 (720)
|. +..+ .+|+.+. .+.. ..+| .++.+++|++|++++|.+ ..+|... ++|++|++++|.+. .+|. +
T Consensus 163 N~-l~~lp~~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~l~~n~l~-~lp~-~ 233 (454)
T 1jl5_A 163 NS-LKKLPDLPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIVAGNNILE-ELPE-L 233 (454)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEECCSSCCS-SCCC-C
T ss_pred Cc-CcccCCCcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccEEECcCCcCC-cccc-c
Confidence 86 2111 1111110 0000 0122 256667777777777663 3355432 46777777776443 6663 7
Q ss_pred CCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 541 GQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 541 ~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+.+++|++|++++|.+.+++.. +++|+.|++++|.+.+++.. ...++.++++.+...... .+ .++|+.
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~--~~--~~~L~~ 301 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLS--EL--PPNLYY 301 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEES--CC--CTTCCE
T ss_pred CCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCccc--Cc--CCcCCE
Confidence 7788888888888877776542 26777777777776664432 245666666665544311 00 012222
Q ss_pred c---------------cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCcccc--cchh
Q 047161 621 L---------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLA--TISD 683 (720)
Q Consensus 621 L---------------~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~--~lp~ 683 (720)
| +|+.|++++|.++.+|.. +++|+.|++++| .++.+|..+++|+.|++++|.-.. .+|.
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCCCCcCCCChH
Confidence 2 458889999998888864 588999999998 577888877899999999987555 6788
Q ss_pred hccCc-------------hhHhhhhhhcccch---hHHHHHh
Q 047161 684 ALRSC-------------NSATSRIFCINCPK---LILNWLQ 709 (720)
Q Consensus 684 ~~~~~-------------~~L~~l~~~~nc~~---l~~~w~~ 709 (720)
++..+ ++|+.|++.+|... .+|.|+.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp TCCEEECCC---------------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 88777 78999888876443 3555554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-23 Score=233.75 Aligned_cols=347 Identities=15% Similarity=0.121 Sum_probs=195.7
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEecccc----CCcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQL----PAGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~l 405 (720)
++.|++|+|.+.... |..+..+.+|..++...+.+... .+|.++++|+.|++++|.+ +..+..+ ..+
T Consensus 35 l~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L 107 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQ------NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KAL 107 (606)
T ss_dssp CCEEECTTCCCSEEC------TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTC
T ss_pred CcEEEccCCccCcCC------hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc-ccc
Confidence 577899999998765 77788888888887777665543 3689999999999999976 3344443 569
Q ss_pred eEEEecCCCCCCC-CCCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC-------CCCCCCC
Q 047161 406 RLLQWHGYPLKSL-PSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR-------LQNCTSL 476 (720)
Q Consensus 406 ~~L~~~~~~~~~l-p~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~-------l~~~~~L 476 (720)
+.|++++|.+..+ |..+ ...++++|++++|.+..+ ..|.+..+++|++|++++|.- ++.++++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI--------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC--------CCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCccccc--------CcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 9999999999987 3444 467899999999887643 224555677888888887751 1222222
Q ss_pred c------------ccCccchhh------------hH--------------------------------------------
Q 047161 477 T------------TLPREIATE------------SL-------------------------------------------- 488 (720)
Q Consensus 477 ~------------~lp~~~~~~------------~l-------------------------------------------- 488 (720)
+ .++...+.. .+
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 2 111111000 00
Q ss_pred -----------HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccc
Q 047161 489 -----------QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 489 -----------~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
+..++.+++|++|++++|. +..+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 1113334444444444444 2344444444444444444444433333444444444444444444444
Q ss_pred c-CCccccCCcCCceEEEeecCCCCCCC--CCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc
Q 047161 558 Q-PVPSIFFPSRILKVYLFVDTRDHRTS--SSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV 634 (720)
Q Consensus 558 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~ 634 (720)
+ .++..+..+++|+.|++++|.+.... +..+..+..++.+++..+.........+..+++| +.|++++|.+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~ 413 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-----ELLDLAFTRLK 413 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC-----SEEECTTCCEE
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC-----CeEECCCCcCC
Confidence 2 22222333344555555444444433 3344444555555554444433333334444443 56667777666
Q ss_pred cc-c-ccccCCCCCceeeccccccccccCCc---ccccceEeeecCccccc-c--hhhccCchhHhhhhhhcc
Q 047161 635 SL-R-GTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLAT-I--SDALRSCNSATSRIFCIN 699 (720)
Q Consensus 635 ~l-p-~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~-l--p~~~~~~~~L~~l~~~~n 699 (720)
.. | ..+..+++|+.|++++|..-...|.. .++|++|++++|.--.. + +..+.++++|+.|++.+|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 43 2 33667777777777777432222221 24577777777654331 2 245666777777666644
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=221.54 Aligned_cols=288 Identities=18% Similarity=0.210 Sum_probs=171.4
Q ss_pred EEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeec
Q 047161 387 LKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELIL 464 (720)
Q Consensus 387 L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L 464 (720)
++.+++.+......++..++.|++++|.+..++. .| ...++++|++++|.+..+. +..|.++++|++|+|
T Consensus 16 v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--------~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--------PGAFNNLFNLRTLGL 87 (477)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEEC
T ss_pred EEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC--------hhhhhCCccCCEEEC
Confidence 3444444332223344556666666666665532 33 2456666666666554331 123566666666666
Q ss_pred CCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC
Q 047161 465 DGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQME 544 (720)
Q Consensus 465 ~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 544 (720)
++|. +..+|... ++.+++|++|+|++|.+.+..|..+.++++|++|++++|.+.+..|..+..++
T Consensus 88 ~~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 88 RSNR-------LKLIPLGV--------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp CSSC-------CCSCCTTS--------STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred CCCc-------CCccCccc--------ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 6665 44555432 45566666666666665555555666666666666666655555555666666
Q ss_pred CCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc---
Q 047161 545 SLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL--- 621 (720)
Q Consensus 545 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L--- 621 (720)
+|++|++++|.+.+.++..+..+++|+.|++.+|.+..+.+..+..+..++.+++..+.......+......+|+.|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 66666666666666665545445666666666666666655556666666655555443333222222111222221
Q ss_pred ----------------cccEEECCCCCCcccc-ccccCCCCCceeeccccccccccC-C-cc--cccceEeeecCccccc
Q 047161 622 ----------------NLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLS-E-LP--SDIKKVRVHGCTSLAT 680 (720)
Q Consensus 622 ----------------~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp-~-lp--~~L~~L~l~~c~~L~~ 680 (720)
+|+.|+|++|.++.++ ..+..+++|+.|+|++|. +..++ . +. ++|+.|++++|. ++.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 310 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-Cce
Confidence 2377888888888766 457788888888888884 44442 1 11 569999999974 666
Q ss_pred ch-hhccCchhHhhhhhhcc
Q 047161 681 IS-DALRSCNSATSRIFCIN 699 (720)
Q Consensus 681 lp-~~~~~~~~L~~l~~~~n 699 (720)
+| ..+.++++|+.+.+..|
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSS
T ss_pred eCHhHcCCCcccCEEEccCC
Confidence 66 46788999999888766
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=208.25 Aligned_cols=281 Identities=14% Similarity=0.188 Sum_probs=224.7
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCc
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNL 459 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L 459 (720)
.+++.++++++.+.......+..++.|++++|.+..++. .+ ...++++|++++|.+..+. +..|..+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--------EKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------GGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC--------HhHhhCcCCC
Confidence 467888888887654334455679999999999988864 44 4678999999998876542 2348889999
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC--cccC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL--ENMP 537 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l--~~lp 537 (720)
++|++++|. +..+|.. +. ++|++|++++|.+....+..++++++|++|++++|.+. +..|
T Consensus 105 ~~L~L~~n~-------l~~l~~~---------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 105 QKLYISKNH-------LVEIPPN---------LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CEEECCSSC-------CCSCCSS---------CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CEEECCCCc-------CCccCcc---------cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 999999987 5778876 33 78999999999855444446889999999999999764 3567
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..+..+ +|++|++++|.+.++|.... ++|+.|++++|.+....+..+..+..++.+++..+.........+..+++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred ccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 778888 99999999999999877654 78999999999999999899999999999999988777655556777777
Q ss_pred CCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-----c-----ccccceEeeecCccc--ccchhhc
Q 047161 618 LTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-----L-----PSDIKKVRVHGCTSL--ATISDAL 685 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----l-----p~~L~~L~l~~c~~L--~~lp~~~ 685 (720)
| +.|++++|.++.+|.++..+++|+.|++++|+ ++.+|. . .++|+.|++.+++.. ...|..+
T Consensus 243 L-----~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 243 L-----RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp C-----CEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred C-----CEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 6 78899999999999999999999999999994 666542 1 256899999998855 4556788
Q ss_pred cCchhHhhhhhhc
Q 047161 686 RSCNSATSRIFCI 698 (720)
Q Consensus 686 ~~~~~L~~l~~~~ 698 (720)
.++++|+.+.+..
T Consensus 317 ~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 317 RCVTDRLAIQFGN 329 (332)
T ss_dssp TTBCCSTTEEC--
T ss_pred cccchhhhhhccc
Confidence 8899998866653
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=206.59 Aligned_cols=283 Identities=15% Similarity=0.167 Sum_probs=227.5
Q ss_pred cCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 381 MTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 381 l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
..+++.++++++.+..-...++..++.|++++|.+..+|. .+ ...++++|++++|.+..+. +..|..+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~ 101 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------PGAFAPLVK 101 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--------TTTTTTCTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--------HHHhcCCCC
Confidence 3467888888877654444556789999999999998876 34 4678999999998876431 234889999
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc--cc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE--NM 536 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~--~l 536 (720)
|++|++++|. +..+|.. +. ++|++|++++|.+.+..+..++++++|++|++++|.+.. ..
T Consensus 102 L~~L~Ls~n~-------l~~l~~~---------~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 102 LERLYLSKNQ-------LKELPEK---------MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CCEEECCSSC-------CSBCCSS---------CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCEEECCCCc-------CCccChh---------hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 9999999987 5778876 32 789999999999666555668899999999999997643 56
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
|..+.++++|++|++++|.+..+|.... ++|+.|++++|.+....+..+..+..++.++++.+.........+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 7788999999999999999998877654 7899999999999998888999999999999998887766555677777
Q ss_pred CCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC--c--------ccccceEeeecCccc--ccchhh
Q 047161 617 SLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE--L--------PSDIKKVRVHGCTSL--ATISDA 684 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l--------p~~L~~L~l~~c~~L--~~lp~~ 684 (720)
+| +.|++++|.++.+|.++..+++|++|++++|+ ++.+|. + .++|+.|++.+++.. ...|..
T Consensus 241 ~L-----~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 241 HL-----RELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp TC-----CEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred CC-----CEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 76 78899999999999999999999999999994 666652 1 256889999988743 244577
Q ss_pred ccCchhHhhhhhhc
Q 047161 685 LRSCNSATSRIFCI 698 (720)
Q Consensus 685 ~~~~~~L~~l~~~~ 698 (720)
+.++.+++.+++..
T Consensus 315 f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 315 FRCVYVRAAVQLGN 328 (330)
T ss_dssp GTTCCCGGGEEC--
T ss_pred cccccceeEEEecc
Confidence 88888888866654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-23 Score=233.78 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=164.2
Q ss_pred hccCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcC
Q 047161 492 IELLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSR 568 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~ 568 (720)
++.+++|++|++++|.+.+. .|..++.+++|++|++++|. +..+|..+..+++|++|++++|.+.+.++ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 55678888888888875443 36777888888888888875 55577888889999999999998888776 5555568
Q ss_pred CceEEEeecCCCCCCCCCcccccccccccccCCCCcccc-cCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCC
Q 047161 569 ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL-MLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKF 646 (720)
Q Consensus 569 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~-~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L 646 (720)
+|+.|++++|.+....+..+..+..++.+++..+...+. ....++.+++| +.|++++|.++.+ |.++.++++|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-----TFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-----CEEECCCCcCCccChhhhcccccC
Confidence 999999999988888888888889999999988877664 34447778776 7889999999876 5778999999
Q ss_pred ceeeccccccccccCC-cc--cccceEeeecCcccccchhhccCch-hHhhhhhhcc-----cch-hHHHHHhh
Q 047161 647 KHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDALRSCN-SATSRIFCIN-----CPK-LILNWLQQ 710 (720)
Q Consensus 647 ~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~~~~~~-~L~~l~~~~n-----c~~-l~~~w~~~ 710 (720)
++|++++|+.....|. +. ++|+.|++++|. ++.+|..+..++ +|+.+++..| |+. ....|+++
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 9999999953333232 22 569999999986 789998888887 5888887765 442 23567654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=227.58 Aligned_cols=347 Identities=15% Similarity=0.174 Sum_probs=224.0
Q ss_pred HHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC----CcccCccccceE
Q 047161 334 VLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP----AGLESLSDELRL 407 (720)
Q Consensus 334 ~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~~ 407 (720)
.|++|+|+|... |..+. .++..++...+.+.+. ..|.++++|++|++++|.+. ..+..+ ..+++
T Consensus 4 ~l~ls~n~l~~i-------p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~ 73 (520)
T 2z7x_B 4 LVDRSKNGLIHV-------PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEY 73 (520)
T ss_dssp EEECTTSCCSSC-------CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCE
T ss_pred eEecCCCCcccc-------ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCE
Confidence 356777777643 44333 3344444444444443 26788888888888888763 334443 45888
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----CCCCCCC--cc---
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR----LQNCTSL--TT--- 478 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~----l~~~~~L--~~--- 478 (720)
|++++|.+..+|.. ...++++|++++|.+..+. .+..|+.+++|++|++++|.- +..++++ +.
T Consensus 74 L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 74 LDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP-------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145 (520)
T ss_dssp EECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC-------CCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred EecCCCceeecCcc-ccCCccEEeccCCcccccc-------chhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence 88888888888877 7788888888888765421 012356666666666666641 1112222 11
Q ss_pred ----------cCccc------------------------------------------------hhhhHHHHhcc------
Q 047161 479 ----------LPREI------------------------------------------------ATESLQKLIEL------ 494 (720)
Q Consensus 479 ----------lp~~~------------------------------------------------~~~~l~~~i~~------ 494 (720)
.|..+ ..+.+| .++.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~ 224 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN 224 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence 12111 011111 1222
Q ss_pred ---------------------CCCCcEEeccCCCCCcccCCCC-----CCCCCCCEEeccCCCCCcccCc-C--------
Q 047161 495 ---------------------LTGLVFLNLNDCKILVRLPSTI-----NGWKSLRTVNLSRCSKLENMPE-S-------- 539 (720)
Q Consensus 495 ---------------------l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~L~~L~L~~~~~l~~lp~-~-------- 539 (720)
.++|++|++++|.+.+.+|..+ +++++|+.+++++|.. .+|. .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 2367777777777666888887 7777777777666654 3441 0
Q ss_pred -----------------cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCC--CCcccccccccccccC
Q 047161 540 -----------------LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTS--SSSWHLWFPFSLMQKG 600 (720)
Q Consensus 540 -----------------~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~l~l~ 600 (720)
...+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+. +..+..+..++.++++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 157788888888888888865555555588888888888877643 3557778888888888
Q ss_pred CCCccc-ccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCc---ccccceEeeecC
Q 047161 601 SSDSMA-LMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGC 675 (720)
Q Consensus 601 ~~~~~~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c 675 (720)
.+.... .....+..+++| +.|++++|.++ .+|..+. ++|+.|++++| .++.+|.- .++|+.|++++|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSL-----LSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTC-----CEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCcCCcccccchhccCccC-----CEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 877665 333336666665 67888888885 4555443 68999999998 46666642 157999999997
Q ss_pred cccccchhh-ccCchhHhhhhhhcc---cch---hH-HHHHhh
Q 047161 676 TSLATISDA-LRSCNSATSRIFCIN---CPK---LI-LNWLQQ 710 (720)
Q Consensus 676 ~~L~~lp~~-~~~~~~L~~l~~~~n---c~~---l~-~~w~~~ 710 (720)
.++.+|.. +.++++|+.+++..| |.. .. ..|+.+
T Consensus 455 -~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 455 -QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred -cCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence 47788876 888999999887766 332 22 667765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=214.55 Aligned_cols=298 Identities=20% Similarity=0.308 Sum_probs=194.5
Q ss_pred CCcceEEEeccccC----CcccCccccceEEEecCCCCC-CCC-CCC-CCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 382 TNLRLLKIHNLQLP----AGLESLSDELRLLQWHGYPLK-SLP-SSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 382 ~~L~~L~l~~~~l~----~~~~~l~~~l~~L~~~~~~~~-~lp-~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.++++|++++|.+. ..+..+ ..++.|++++|.+. .+| ..+ ...++++|++++|.+..+. +..|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--------TGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--------TTTTT
T ss_pred CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--------hhhcc
Confidence 45677777776552 233333 34677777776654 443 233 3466677777766654331 22366
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHH--hccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL--IELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~--i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~ 531 (720)
++++|++|+|++|. +.. ..+.. ++.+++|++|+|++|.+.+..|.. ++++++|++|++++|.
T Consensus 101 ~l~~L~~L~L~~n~-------l~~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 101 GLANLEVLTLTQCN-------LDG--------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCCEEECTTSC-------CBT--------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CcccCCEEeCCCCC-------CCc--------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 67777777777765 221 11111 667888888888888866655665 6788888888888887
Q ss_pred CCcccCcCcCCC----------------------------------CCCCEEeccCcccccCCccccC------------
Q 047161 532 KLENMPESLGQM----------------------------------ESLEELDVSGTVIRQPVPSIFF------------ 565 (720)
Q Consensus 532 ~l~~lp~~~~~L----------------------------------~~L~~L~L~~n~l~~~~~~~~~------------ 565 (720)
+.+..|..+..+ ++|++|++++|.+.+..+..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 666555555433 4566666666655432211100
Q ss_pred ---------------------------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCC
Q 047161 566 ---------------------------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSL 618 (720)
Q Consensus 566 ---------------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L 618 (720)
..++|+.|++++|.+....+..+..+..++.+++..+.........+.++++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 01356666666666666666677777778888887777666555567777766
Q ss_pred CcccccEEECCCCCCccc-cccccCCCCCceeecccccccccc-CC-cc--cccceEeeecCcccccchh-hccCchhHh
Q 047161 619 TELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSL-SE-LP--SDIKKVRVHGCTSLATISD-ALRSCNSAT 692 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~l-p~-lp--~~L~~L~l~~c~~L~~lp~-~~~~~~~L~ 692 (720)
+.|++++|.++.+ |..+.++++|+.|+|++|. +..+ |. +. ++|++|++++|. ++.+|. .+..+++|+
T Consensus 326 -----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 326 -----LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp -----CEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred -----CEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCccc
Confidence 7889999999977 5778999999999999995 4444 32 21 679999999975 666764 568899999
Q ss_pred hhhhhcc-----cchh--HHHHHhh
Q 047161 693 SRIFCIN-----CPKL--ILNWLQQ 710 (720)
Q Consensus 693 ~l~~~~n-----c~~l--~~~w~~~ 710 (720)
.+.+.+| ||.+ +..|+.+
T Consensus 399 ~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 399 KIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp EEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred EEEccCCCcccCCCcchHHHHHHHh
Confidence 9888776 7743 5678874
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=206.56 Aligned_cols=278 Identities=17% Similarity=0.191 Sum_probs=156.9
Q ss_pred chhccCCcceEEEeccccCCcc-cCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPAGL-ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~~-~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
.+..+++|+.|++++|.+.... ......++.|++++|.+..+|......++++|+++++.+..+ +.+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~----------~~~~~ 130 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI----------SPLAN 130 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC----------GGGTT
T ss_pred hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc----------hhhcc
Confidence 4555666666666665542211 111234666666666666555433455566666655554322 22555
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|..+ ..++. +..+++|++|++++|.+. .++. ++.+++|++|++++|.+. .
T Consensus 131 l~~L~~L~l~~n~~~------~~~~~----------~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 131 LTKMYSLNLGANHNL------SDLSP----------LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp CTTCCEEECTTCTTC------CCCGG----------GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCC-C
T ss_pred CCceeEEECCCCCCc------ccccc----------hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccc-c
Confidence 666666666666422 22211 556667777777776633 3333 666677777777776433 3
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
++. +..+++|+.|++++|.+.+.++ +..+++|+.|++++|.+....+ +..+..++.+++..+..... +.+..+
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 333 6666777777777776666554 2333677777777776666544 56666666666666554432 335555
Q ss_pred CCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccC----CcccccceEeeecCcccccchhhccCchhH
Q 047161 616 CSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS----ELPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 616 ~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
++| +.|++++|.++.+| .+..+++|+.|++++|+.-...| .+ ++|+.|++++|+ +..++. +..+++|
T Consensus 265 ~~L-----~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 265 TKL-----KMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNH-ITDIRP-LASLSKM 335 (347)
T ss_dssp TTC-----CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSS-CCCCGG-GGGCTTC
T ss_pred CCc-----CEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCc-cccccC-hhhhhcc
Confidence 544 56667777776664 46667777777777774221111 12 457777777766 444443 5666677
Q ss_pred hhhhhhcc
Q 047161 692 TSRIFCIN 699 (720)
Q Consensus 692 ~~l~~~~n 699 (720)
+.+++.+|
T Consensus 336 ~~L~l~~N 343 (347)
T 4fmz_A 336 DSADFANQ 343 (347)
T ss_dssp SEESSSCC
T ss_pred ceeehhhh
Confidence 66555533
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=221.66 Aligned_cols=289 Identities=18% Similarity=0.196 Sum_probs=161.3
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCC---cccCccccceE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPA---GLESLSDELRL 407 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~---~~~~l~~~l~~ 407 (720)
+.|++++|.+.... |..+..+.+|..++...+.+... .+|.++++|+.|++++|.+.. ....-...++.
T Consensus 35 ~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 35 RLLDLGKNRIKTLN------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp SEEECCSSCCCEEC------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred cEEECCCCccceEC------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 45566666665443 33444444444444333333221 244555555555555554421 11111233555
Q ss_pred EEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 408 LQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 408 L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
|++++|.+..++. .+ ...++..|++.+|.+..+. ...|..+++|+.|+|++|. +..++..
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~-------l~~~~~~--- 170 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--------HRAFSGLNSLEQLTLEKCN-------LTSIPTE--- 170 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC--------TTSSTTCTTCCEEEEESCC-------CSSCCHH---
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeC--------hhhccCCCCCCEEECCCCc-------CcccChh---
Confidence 5555555544322 22 2344555555544443221 1134555555555555554 3333332
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
.+..+++|+.|++++|.+.+..+..+.++++|++|++++|...+.+|..+....+|++|++++|.+.+.++..+.
T Consensus 171 -----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 171 -----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp -----HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred -----HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 256667777777777765555555666777777777777766666666665666777777777777766655555
Q ss_pred CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cccCCC
Q 047161 566 PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TINHLP 644 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~ 644 (720)
.+++|+.|++++|.+..+.+..+..+..|+.+.+..+.........+.++++| +.|+|++|.++.+|. .+..++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-----RVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC-----CEEECCSSCCSCCCGGGBSCGG
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC-----CEEECCCCcCceeCHhHcCCCc
Confidence 55677777777777666666666666677777766666655555556666655 566667777666653 446666
Q ss_pred CCceeeccccc
Q 047161 645 KFKHLKLDDCK 655 (720)
Q Consensus 645 ~L~~L~L~~c~ 655 (720)
+|+.|+|++|+
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 77777776664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=227.98 Aligned_cols=164 Identities=20% Similarity=0.290 Sum_probs=106.6
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC-CcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS-SSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
.+..+++|++|++++|.+.+.++. +..+++|+.|++.+|.+....+ ..+..+..++.+++..+.........+.++++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 344444555555555555444444 2223555555555555554433 34555666666666665554444444555555
Q ss_pred CCcccccEEECCCCCCc--cccccccCCCCCceeecccccccccc-CC-cc--cccceEeeecCcccccch-hhccCchh
Q 047161 618 LTELNLKKLNLRRNNFV--SLRGTINHLPKFKHLKLDDCKRLRSL-SE-LP--SDIKKVRVHGCTSLATIS-DALRSCNS 690 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~l-p~-lp--~~L~~L~l~~c~~L~~lp-~~~~~~~~ 690 (720)
| +.|++++|.+. .+|..+..+++|+.|++++|. +..+ |. +. ++|+.|++++|. +..+| ..+.++++
T Consensus 447 L-----~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 447 L-----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTS 519 (570)
T ss_dssp C-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred C-----cEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccC
Confidence 5 78899999886 588899999999999999995 4444 42 22 579999999985 55554 67889999
Q ss_pred Hhhhhhhcc-----cchh--HHHHHhh
Q 047161 691 ATSRIFCIN-----CPKL--ILNWLQQ 710 (720)
Q Consensus 691 L~~l~~~~n-----c~~l--~~~w~~~ 710 (720)
|+.+.+..| ||.. .+.|+..
T Consensus 520 L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CcEEEecCCcccCCCcchHHHHHHHHh
Confidence 999888776 6654 3488875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=230.77 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=169.7
Q ss_pred CCCCceeeecCCCCC-----CCCCCCCcccCc--cchhh--hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEE
Q 047161 455 GAPNLEELILDGCKR-----LQNCTSLTTLPR--EIATE--SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTV 525 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~-----l~~~~~L~~lp~--~~~~~--~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L 525 (720)
.+++|+.|++++|.. +..+++|+.+.- +...+ ..|..+..+++|++|++++|. +..+|..++.+++|++|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 555555566555531 223444444321 11111 124558889999999999998 56688899999999999
Q ss_pred eccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC-CCCCcccccccccccccCCCC
Q 047161 526 NLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR-TSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 526 ~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~l~l~~~~ 603 (720)
++++|.+.+..| ..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+.+ ..+..+..+..|+.++++.+.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999997777666 578899999999999999999887777777999999999998887 467888899999999999988
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCC----cccccceEeeecCccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE----LPSDIKKVRVHGCTSL 678 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~l~~c~~L 678 (720)
........+.++++| +.|++++|.++.+ |..+.++++|+.|+|++|+ ++.+|. +|.+|+.|++++++-.
T Consensus 485 l~~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 485 LEQISWGVFDTLHRL-----QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEECTTTTTTCTTC-----CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCccChhhhcccccC-----CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 777666668888877 7888999999876 7888999999999999995 667764 4457999999987754
Q ss_pred ccc
Q 047161 679 ATI 681 (720)
Q Consensus 679 ~~l 681 (720)
...
T Consensus 559 c~c 561 (606)
T 3vq2_A 559 CIC 561 (606)
T ss_dssp CSS
T ss_pred cCC
Confidence 433
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=207.55 Aligned_cols=281 Identities=18% Similarity=0.233 Sum_probs=170.5
Q ss_pred cCCcceEEEecccc---CCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 381 MTNLRLLKIHNLQL---PAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 381 l~~L~~L~l~~~~l---~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+++.++++++.+ |..+......++.|++++|.+..+|. .+ ...++++|+++++.+..+.. ..|+.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--------HHhcC
Confidence 34555555555543 22211112335555555555555443 22 24455555555554433211 12455
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|. +..+|... ++.+++|++|++++|.+.+..|..++++++|++|++++|.+..
T Consensus 116 l~~L~~L~L~~n~-------l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 179 (390)
T 3o6n_A 116 VPLLTVLVLERND-------LSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 179 (390)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-
T ss_pred CCCCCEEECCCCc-------cCcCCHHH--------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-
Confidence 5556666665554 34444432 3455555555555555444444445555555555555554332
Q ss_pred cC-c----------------CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccc
Q 047161 536 MP-E----------------SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598 (720)
Q Consensus 536 lp-~----------------~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~ 598 (720)
++ . .+...++|++|++++|.+...+... .++|+.|++.+|.+... ..+..+..++.++
T Consensus 180 ~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 11 0 0112245666666666666554433 26788888888877765 4677788888888
Q ss_pred cCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-cc--cccceEeeecC
Q 047161 599 KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGC 675 (720)
Q Consensus 599 l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c 675 (720)
++.+.........+..+++| +.|++++|.++.+|..+..+++|+.|++++| .+..+|. ++ ++|+.|++++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRL-----ERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSC-----CEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCCcCCCcChhHccccccC-----CEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 88887766655567777776 7888899999999988888999999999999 4556653 22 67999999987
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
. +..+| +..+++|+.+.+.+|
T Consensus 329 ~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 329 S-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSS
T ss_pred c-cceeC--chhhccCCEEEcCCC
Confidence 6 56665 667888888777765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-22 Score=233.11 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=198.8
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhc---CcchhccCCcceEEEecccc----CCcccCcccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRR---NTAFLKMTNLRLLKIHNLQL----PAGLESLSDE 404 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~ 404 (720)
++.|++|+|.+.... |..+..+.+|..++...+.... ..+|.++++|++|++++|.+ |..+..+ ..
T Consensus 26 l~~LdLs~N~i~~i~------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~ 98 (844)
T 3j0a_A 26 TERLLLSFNYIRTVT------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FH 98 (844)
T ss_dssp CCEEEEESCCCCEEC------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-SS
T ss_pred cCEEECCCCcCCccC------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-cc
Confidence 467889999987665 7778888888877766553221 23688899999999998876 3445544 45
Q ss_pred ceEEEecCCCCCC-CCCC--C-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCC-------CC
Q 047161 405 LRLLQWHGYPLKS-LPSS--M-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQ-------NC 473 (720)
Q Consensus 405 l~~L~~~~~~~~~-lp~~--~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~-------~~ 473 (720)
++.|++++|.+.. +|.. + ...++++|++++|.+..+. ..+.|+++++|++|+|++|.--. .+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-------cchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8899999998875 4443 3 4678888998888775431 11347888999999999886210 00
Q ss_pred --CCCcccC--ccchhhhHHHHhccCC------CCcEEeccCCCCCcccCCCCCC-------------------------
Q 047161 474 --TSLTTLP--REIATESLQKLIELLT------GLVFLNLNDCKILVRLPSTING------------------------- 518 (720)
Q Consensus 474 --~~L~~lp--~~~~~~~l~~~i~~l~------~L~~L~Ls~n~~~~~lp~~i~~------------------------- 518 (720)
++|+.+. .+...+..|..++.++ +|++|++++|.+.+..|..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 1111110 0000000111122222 2566666665443333322211
Q ss_pred -------------CCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC
Q 047161 519 -------------WKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 519 -------------l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
.++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.+..+.+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1456666666655555455556666666666666666666555554444666666666666655555
Q ss_pred CcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCccc
Q 047161 586 SSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPS 665 (720)
Q Consensus 586 ~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~ 665 (720)
..+..+..++.+++..+.........+.++++| +.|++++|.++.++. +++|+.|++++| .+..+|..+.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-----~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~~~ 401 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-----QTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKINL 401 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-----CEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCCCT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-----CEEECCCCCCCcccC----CCCcchhccCCC-Cccccccccc
Confidence 566666666666666555444333345555544 455556666554442 556666666666 3445555555
Q ss_pred ccceEeeecCcccccch--hhccCchhHhhhhhhcc
Q 047161 666 DIKKVRVHGCTSLATIS--DALRSCNSATSRIFCIN 699 (720)
Q Consensus 666 ~L~~L~l~~c~~L~~lp--~~~~~~~~L~~l~~~~n 699 (720)
+++.|+++++. +..++ ..+.++++|+.|++..|
T Consensus 402 ~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 402 TANLIHLSENR-LENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp TCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESC
T ss_pred ccceeecccCc-cccCchhhhhhcCCccceeeCCCC
Confidence 66666666543 44433 23446777777666654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=220.91 Aligned_cols=337 Identities=15% Similarity=0.145 Sum_probs=197.0
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC----CcccCccccce
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP----AGLESLSDELR 406 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~ 406 (720)
+.+++++++|... |..+. .++..++...+.+.+. ..|.++++|+.|++++|.+. ..+..+ ..++
T Consensus 34 ~~l~ls~~~L~~i-------p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHV-------PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLE 103 (562)
T ss_dssp CEEECTTSCCCSC-------CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC-TTCC
T ss_pred cEEEcCCCCCccC-------CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC-CCCC
Confidence 4567777777653 43322 2333333333444433 26778888888888888663 333333 4588
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----CCCCCCC--ccc-
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR----LQNCTSL--TTL- 479 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~----l~~~~~L--~~l- 479 (720)
+|++++|.+..+|.. ...++++|++++|++..+.. +..|+++++|++|++++|.- +..++++ +.+
T Consensus 104 ~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~-------p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 104 YLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPV-------CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175 (562)
T ss_dssp EEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCC-------CGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEE
T ss_pred EEECCCCcCCccCcc-ccccCCEEECCCCCccccCc-------hHhhcccCcccEEecCCCccccCchhhhhhceeeEEE
Confidence 888888888888877 77788888888877654321 11245555555555555531 1111111 000
Q ss_pred ------------Cccch----------------------------------------------h----------------
Q 047161 480 ------------PREIA----------------------------------------------T---------------- 485 (720)
Q Consensus 480 ------------p~~~~----------------------------------------------~---------------- 485 (720)
|..+. .
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 00000 0
Q ss_pred -----------hhHHHHhccCCCCcEEeccCCCCCcccCCCC-----CCCCC--------------------------CC
Q 047161 486 -----------ESLQKLIELLTGLVFLNLNDCKILVRLPSTI-----NGWKS--------------------------LR 523 (720)
Q Consensus 486 -----------~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~--------------------------L~ 523 (720)
..++..+ ..++|++|++++|.+.+.+|..+ +++++ |+
T Consensus 256 L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred ecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 0011111 12378888888887766788766 33332 44
Q ss_pred EEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC--CcccccccccccccCC
Q 047161 524 TVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS--SSWHLWFPFSLMQKGS 601 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~l~l~~ 601 (720)
+|++++|.+.. .+ ..+.+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+.. ..+..+..++.++++.
T Consensus 335 ~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 44444443211 11 11567778888888887777555555555778888887777776542 4567777777777777
Q ss_pred CCccc-ccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcc---cccceEeeecCc
Q 047161 602 SDSMA-LMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCT 676 (720)
Q Consensus 602 ~~~~~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~ 676 (720)
+.... .....+..+++| +.|++++|.++ .+|..+. ++|+.|++++| .++.+|.-- ++|+.|++++|.
T Consensus 413 N~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESI-----LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp SCCBSCCSSCCCCCCTTC-----CEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CcCCCccChhhhcCcccC-----CEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 76655 222236666655 66777777775 3444333 57788888877 455665311 457778887754
Q ss_pred ccccchhh-ccCchhHhhhhhhcc
Q 047161 677 SLATISDA-LRSCNSATSRIFCIN 699 (720)
Q Consensus 677 ~L~~lp~~-~~~~~~L~~l~~~~n 699 (720)
++.+|.. +..+++|+.+++..|
T Consensus 485 -l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 485 -LKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp -CCCCCTTSTTTCTTCCCEECCSC
T ss_pred -CCCCCHHHHhcCCCCCEEEecCC
Confidence 6677765 777777777776665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=213.18 Aligned_cols=278 Identities=17% Similarity=0.116 Sum_probs=154.9
Q ss_pred cchhccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 376 TAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 376 ~~~~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+..+++|+.|++++|.+..........++.|++++|.+..+| .....++++|++++|++..+ | ++.
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l----------~-~~~ 125 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL----------D-VSQ 125 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC----------C-CTT
T ss_pred hhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee----------c-CCC
Confidence 34556666666666666553321122234666666666666654 22345666666666655332 2 556
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|. ++.++ ++.+++|++|++++|..++.+ .++.+++|++|++++|.+. .
T Consensus 126 l~~L~~L~l~~N~-------l~~l~-----------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~ 184 (457)
T 3bz5_A 126 NPLLTYLNCARNT-------LTEID-----------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-E 184 (457)
T ss_dssp CTTCCEEECTTSC-------CSCCC-----------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-C
T ss_pred CCcCCEEECCCCc-------cceec-----------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-e
Confidence 6666666666665 23321 445666666776666545555 3556666777777666433 3
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
+| ++.+++|+.|++++|.+.+.+ +..+++|+.|++++|.+.+++ +..+..++.+++..+...... ++.+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l 253 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTL 253 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence 44 566666777777766666652 223366677777666666643 555666666666666554432 3344
Q ss_pred CCCCcc-----cccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchh------
Q 047161 616 CSLTEL-----NLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISD------ 683 (720)
Q Consensus 616 ~~L~~L-----~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~------ 683 (720)
++|+.| +|+.|++++|.+. .+| +..+++|+.|++++|+.++.+|.-.++|+.|++++|++|+.+.-
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 444444 3455666666533 344 35667777777777776666654333444444444444433320
Q ss_pred --hccCchhHhhhhhhcc
Q 047161 684 --ALRSCNSATSRIFCIN 699 (720)
Q Consensus 684 --~~~~~~~L~~l~~~~n 699 (720)
.+.+|++|+.|++..|
T Consensus 332 ~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 332 ELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCCTTCTTCSEEECCSS
T ss_pred ccccccCCcCcEEECCCC
Confidence 2555666666555544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=214.87 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=161.1
Q ss_pred chhccCCcceEEEeccccCCc--ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhh--hc--------
Q 047161 377 AFLKMTNLRLLKIHNLQLPAG--LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWK--GI-------- 444 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~--~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~--~~-------- 444 (720)
.+..+++|++|++++|.+... +.. ...++.|++++|.+..+|......++++|+++++.+..+.. ..
T Consensus 85 ~~~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 85 PLKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred hhhccccCCEEECCCCccccChhhcC-CCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 355555666666655554221 122 23355666666655555543344555555555554433211 00
Q ss_pred -cCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCC
Q 047161 445 -KNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLR 523 (720)
Q Consensus 445 -~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~ 523 (720)
..+...+.+..+++|++|++++|. +..++. +..+++|++|++++|.+.+..| ++.+++|+
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~----------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNK-------VSDISV----------LAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSC-------CCCCGG----------GGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred CCcccCchhhccCCCCCEEECcCCc-------CCCChh----------hccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 011223346777778888887776 233321 5667777777777776444333 56677777
Q ss_pred EEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 524 TVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+|++++|.+. .++ .+..+++|++|++++|.+.+.++ +..+++|+.|++++|.+....+ +..+..++.+++..+.
T Consensus 225 ~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 225 ELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 7777776533 333 46667777777777777766655 3334677777777776666544 5666666667666655
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATI 681 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~l 681 (720)
..... .+..+++| +.|++++|.++.++. +..+++|+.|++++| .+..++.+. ++|+.|++++|......
T Consensus 299 l~~~~--~~~~l~~L-----~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 299 LEDIS--PISNLKNL-----TYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CSCCG--GGGGCTTC-----SEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred ccCch--hhcCCCCC-----CEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccc
Confidence 44322 24455544 566667776666553 566677777777776 344444333 45777777766543333
Q ss_pred hhhccCchhHhhhhhhc
Q 047161 682 SDALRSCNSATSRIFCI 698 (720)
Q Consensus 682 p~~~~~~~~L~~l~~~~ 698 (720)
| +..+++|+.+.+..
T Consensus 370 ~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 370 P--LANLTRITQLGLND 384 (466)
T ss_dssp G--GTTCTTCCEEECCC
T ss_pred h--hhcCCCCCEEeccC
Confidence 3 56666666655543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=217.92 Aligned_cols=281 Identities=18% Similarity=0.227 Sum_probs=162.4
Q ss_pred cCCcceEEEecccc---CCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 381 MTNLRLLKIHNLQL---PAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 381 l~~L~~L~l~~~~l---~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+++.++++++.+ |..+......++.|++++|.+..+|. .+ ...+++.|++++|.+..+.. ..|+.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH--------HHHcC
Confidence 34455555555443 22211112335555555555554442 22 23455555555554433211 12455
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|+|++|. +..+|... ++.+++|++|+|++|.+.+..|..++++++|++|++++|.+.+
T Consensus 122 l~~L~~L~L~~n~-------l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 185 (597)
T 3oja_B 122 VPLLTVLVLERND-------LSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 185 (597)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-
T ss_pred CCCCCEEEeeCCC-------CCCCCHHH--------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-
Confidence 5555666665554 34444432 3455555555555555444444455555555555555554332
Q ss_pred cC-c----------------CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccc
Q 047161 536 MP-E----------------SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598 (720)
Q Consensus 536 lp-~----------------~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~ 598 (720)
+| . .+...++|+.|++++|.+...++... ++|+.|++++|.+.+. ..+..+..|..++
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~ 260 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVD 260 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC--hhhccCCCCCEEE
Confidence 21 0 11223345555555555555444332 5677777777776653 5567777888888
Q ss_pred cCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc-c--cccceEeeecC
Q 047161 599 KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL-P--SDIKKVRVHGC 675 (720)
Q Consensus 599 l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-p--~~L~~L~l~~c 675 (720)
++.+......+..++++++| +.|+|++|.++.+|..+..+++|+.|+|++|. +..+|.. . ++|+.|++++|
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L-----~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRL-----ERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSC-----CEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCCccCCCCHHHhcCccCC-----CEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence 88877766655567777766 67788888888888777788888888888884 5555531 1 56888888887
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
. +..+| +..+++|+.+.+.+|
T Consensus 335 ~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 335 S-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSS
T ss_pred C-CCCcC--hhhcCCCCEEEeeCC
Confidence 6 45554 556777777776655
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=212.10 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccc
Q 047161 544 ESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNL 623 (720)
Q Consensus 544 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L 623 (720)
++|++|++++|.+.+.++..+..+++|+.|++++|.+....+..+..+..|+.++++.+.........+.++++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----- 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL----- 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC-----
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC-----
Confidence 578888888888888777766666888888888888888777788888888888888777655544456777766
Q ss_pred cEEECCCCCCccc-cccccCCCCCceeeccccccccccCC--c--ccccceEeeecCcccccch
Q 047161 624 KKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 624 ~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~~L~~lp 682 (720)
+.|+|++|.++.+ |.++..+++|++|+|++| .++.+|. + .++|+.|++++++--...|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6778888888866 567788888888888887 4555553 1 1568888888776544444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=203.33 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=221.7
Q ss_pred chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.+..+++|+.|+++++.+.. .+.. ...++.|++++|.+..+|......++++|+++++.+..+ +.+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~----------~~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEY-LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI----------SALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGGT
T ss_pred cchhcccccEEEEeCCccccchhhhh-cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc----------hHHc
Confidence 45678889999999887632 2333 346999999999999988755678899999998876543 4588
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
.+++|++|++++|. +..++. +..+++|++|++++|.....++ .++.+++|++|++++|....
T Consensus 108 ~l~~L~~L~l~~n~-------i~~~~~----------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-------ISDISP----------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp TCTTCSEEECTTSC-------CCCCGG----------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCEEECcCCc-------ccCchh----------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC
Confidence 99999999999987 455544 6779999999999997666555 48899999999999986544
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~ 614 (720)
++. +..+++|++|++++|.+.+.++ +..+++|+.|++.+|.+....+ +..+..++.+++..+....... +..
T Consensus 170 -~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 170 -VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp -CGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -chh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 443 8899999999999999988776 3445899999999998877655 7788889999998877654332 666
Q ss_pred CCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccchhhccCchhHh
Q 047161 615 LCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALRSCNSAT 692 (720)
Q Consensus 615 l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~~~~~L~ 692 (720)
+++| +.|++++|.++.++ .+..+++|+.|++++| .+..++.+. ++|+.|++++|......|..+.++++|+
T Consensus 242 l~~L-----~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 242 LSQL-----TWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CTTC-----CEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCC-----CEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 7766 78889999998875 6888999999999999 466666443 6799999999986667778899999999
Q ss_pred hhhhhcc
Q 047161 693 SRIFCIN 699 (720)
Q Consensus 693 ~l~~~~n 699 (720)
.+++.+|
T Consensus 315 ~L~L~~n 321 (347)
T 4fmz_A 315 TLFLSQN 321 (347)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 9777755
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-22 Score=204.77 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=107.9
Q ss_pred cceEEEecCCCCC---CCCCCCC-CCcceEeeCCC-CchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCc-
Q 047161 404 ELRLLQWHGYPLK---SLPSSME-MDKTLECNMCY-RRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLT- 477 (720)
Q Consensus 404 ~l~~L~~~~~~~~---~lp~~~~-~~~l~~L~l~~-~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~- 477 (720)
.++.++++++.+. .+|..+. ...++.|++++ +.+... .++.|+.+++|++|+|++|. +.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~--------~p~~l~~l~~L~~L~Ls~n~-------l~~ 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITHTN-------VSG 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEEEC-------CEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc--------CChhHhcCCCCCEEECcCCe-------eCC
Confidence 4555666666554 3444332 33444444442 332211 01224555555555555554 22
Q ss_pred ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC-CCCEEeccCccc
Q 047161 478 TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQME-SLEELDVSGTVI 556 (720)
Q Consensus 478 ~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~-~L~~L~L~~n~l 556 (720)
.+|.. ++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.++ +|++|++++|.+
T Consensus 116 ~~p~~---------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 116 AIPDF---------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCGG---------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cCCHH---------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 34443 55555566666655554445555555555666666655555445555555555 555666655555
Q ss_pred ccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-c
Q 047161 557 RQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-S 635 (720)
Q Consensus 557 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~ 635 (720)
.+..+..+..++ |+.|++++|.+.+..+..+..+..++.+++..+.... .++.+..+++| ++|++++|.++ .
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~L-----~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNL-----NGLDLRNNRIYGT 259 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTC-----CEEECCSSCCEEC
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-ecCcccccCCC-----CEEECcCCcccCc
Confidence 544444443323 5555555555554444444444555555444443321 11223333333 44444555544 3
Q ss_pred ccccccCCCCCceeeccccc
Q 047161 636 LRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 636 lp~~i~~l~~L~~L~L~~c~ 655 (720)
+|.++..+++|+.|++++|+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSE
T ss_pred CChHHhcCcCCCEEECcCCc
Confidence 44444455555555555543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=223.75 Aligned_cols=352 Identities=15% Similarity=0.145 Sum_probs=175.5
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC---C-cccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP---A-GLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~---~-~~~~l~~~l 405 (720)
++.|++++|.+.+.. |..+..+.+|..++...+.+.+. .+|.++++|+.|++++|.+. . .+.. ...+
T Consensus 27 l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-l~~L 99 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLP------AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNL 99 (680)
T ss_dssp CSEEECCSSCCCCCC------GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT-CTTC
T ss_pred CcEEECCCCCCCCcC------HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc-CCCC
Confidence 455667777665542 23344455555544444433332 25667777777777766552 2 1222 2357
Q ss_pred eEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCC---------CCCC
Q 047161 406 RLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRL---------QNCT 474 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l---------~~~~ 474 (720)
++|++++|.+..+|. .+ ...++++|++++|.+.... +..++.+++|++|++++|.-- ..++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--------LGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--------CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccC--------chhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 777777777766653 33 3456777777766554321 122455566666666655310 0111
Q ss_pred CCc----------ccCccchh--------------------hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC--C
Q 047161 475 SLT----------TLPREIAT--------------------ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS--L 522 (720)
Q Consensus 475 ~L~----------~lp~~~~~--------------------~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~--L 522 (720)
+|+ .++...+. ..++..+ ..++|+.|++++|.+.+..|..+.+++. |
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCC
Confidence 122 22211000 0000000 1245666666666655555556655543 6
Q ss_pred CEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC---------CCCCccccccc
Q 047161 523 RTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR---------TSSSSWHLWFP 593 (720)
Q Consensus 523 ~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~ 593 (720)
++|++++|.+.+..|..++.+++|++|++++|.+.+.++..+..+++|+.|++.++...+ +....+..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 666666666555555566666666666666666666555444444555555554332211 11123334444
Q ss_pred ccccccCCCCcccccCCCCCCCCCCCccc-----------------------ccEEECCCCCCccc-cccccCCCCCcee
Q 047161 594 FSLMQKGSSDSMALMLPSLSGLCSLTELN-----------------------LKKLNLRRNNFVSL-RGTINHLPKFKHL 649 (720)
Q Consensus 594 l~~l~l~~~~~~~~~~~~l~~l~~L~~L~-----------------------L~~L~Ls~n~l~~l-p~~i~~l~~L~~L 649 (720)
++.+++..+.........+.++++|+.|+ |+.|++++|.++.+ |..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 44444444443333322344444443331 34455555555543 3445555555555
Q ss_pred eccccccccccCC-----c-----------------------ccccceEeeecCc--ccccchhhccCchhHhhhhhhcc
Q 047161 650 KLDDCKRLRSLSE-----L-----------------------PSDIKKVRVHGCT--SLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 650 ~L~~c~~L~~lp~-----l-----------------------p~~L~~L~l~~c~--~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
++++|..-..+|. + .++|+.|++.+|. .+..+|..+.++++|+.|++.+|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 5555542222221 1 1345555555543 23556777778888888777655
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-22 Score=223.86 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccC---cCcCCCCCCCEEeccCcccccCCc--cccCCcCCc
Q 047161 497 GLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMP---ESLGQMESLEELDVSGTVIRQPVP--SIFFPSRIL 570 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp---~~~~~L~~L~~L~L~~n~l~~~~~--~~~~~~~~L 570 (720)
+|+.|++++|. +..+|..+ .++++|++|++++|.+.+.+| ..++.+++|++|++++|.+.+.++ ..+..+++|
T Consensus 311 ~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 34444444444 23444444 246666666666665555443 235566666666666666665542 223334666
Q ss_pred eEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 571 KVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 571 ~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
+.|++++|.+..++ ..+..+..++.++++.+....... .+ .+ +|+.|++++|+++.++ ..+++|++|+
T Consensus 390 ~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~-----~L~~L~Ls~N~l~~~~---~~l~~L~~L~ 457 (549)
T 2z81_A 390 TSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKT-CI--PQ-----TLEVLDVSNNNLDSFS---LFLPRLQELY 457 (549)
T ss_dssp CEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCT-TS--CT-----TCSEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred CEEECCCCCCccCC-hhhcccccccEEECCCCCcccccc-hh--cC-----CceEEECCCCChhhhc---ccCChhcEEE
Confidence 66666666665433 334455566666666554332110 01 01 3477888888887665 5789999999
Q ss_pred ccccccccccCCc--ccccceEeeecCcccccchhhccCchhHhhhhhhcc-----cch--hHHHHHhhc
Q 047161 651 LDDCKRLRSLSEL--PSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN-----CPK--LILNWLQQY 711 (720)
Q Consensus 651 L~~c~~L~~lp~l--p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n-----c~~--l~~~w~~~~ 711 (720)
|++| .++.+|.. .++|+.|++++|.--...|..+.++++|+.+++..| ||. .+..|+.+.
T Consensus 458 Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 458 ISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp CCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred CCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence 9999 57777753 367999999998644444567899999999888766 553 356688653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=200.74 Aligned_cols=197 Identities=22% Similarity=0.344 Sum_probs=139.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|++|+|++|. +..+|.. ++.+++|++|+|++|.+ ..+|..++++++|++|++++|..
T Consensus 100 l~~l~~L~~L~L~~n~-------l~~lp~~---------~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAG-------LMELPDT---------MQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp GGGGTTCSEEEEESSC-------CCCCCSC---------GGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEEETT
T ss_pred hhhCCCCCEEECCCCC-------ccchhHH---------HhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCCCCC
Confidence 4567788888888876 5667766 77888888888888874 47788888888888888888878
Q ss_pred CcccCcCcCC---------CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 533 LENMPESLGQ---------MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 533 l~~lp~~~~~---------L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
.+.+|..++. +++|++|++++|.+..+|..+... ++|+.|++++|.+.++++
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~N~l~~l~~------------------ 223 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-QNLKSLKIRNSPLSALGP------------------ 223 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC-TTCCEEEEESSCCCCCCG------------------
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC-CCCCEEEccCCCCCcCch------------------
Confidence 8888877654 888888888888888666554444 788888887776554322
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLA 679 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~ 679 (720)
.+..+++| +.|++++|++. .+|.++..+++|++|+|++|.....+|... ++|+.|++++|..++
T Consensus 224 -------~l~~l~~L-----~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 224 -------AIHHLPKL-----EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp -------GGGGCTTC-----CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred -------hhccCCCC-----CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 23334444 56666666554 556667777777777777776666666321 457777777777777
Q ss_pred cchhhccCchhHhhhhhh
Q 047161 680 TISDALRSCNSATSRIFC 697 (720)
Q Consensus 680 ~lp~~~~~~~~L~~l~~~ 697 (720)
.+|+++.++++|+.+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCGGGGGSCTTCEEECC
T ss_pred hccHHHhhccCceEEeCC
Confidence 777777777777664443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=213.66 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc--CCCCCCCCCCCcccccEEECCCCCCcc-ccc-cccCC
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM--LPSLSGLCSLTELNLKKLNLRRNNFVS-LRG-TINHL 643 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~--~~~l~~l~~L~~L~L~~L~Ls~n~l~~-lp~-~i~~l 643 (720)
++|+.|++++|.+.+..+..+..+..++.+++..+...... ...+.++++| +.|++++|.++. +|. .+..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-----~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-----ETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-----CEEECTTSCCBSCCSSCCCCCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-----CEEECCCCcCCCccChhhhcCc
Confidence 34444444444444444444444444444444444333211 1123334433 667777777775 664 35677
Q ss_pred CCCceeeccccccccccC-CcccccceEeeecCcccccchhhccCchhHhhhhhhccc
Q 047161 644 PKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINC 700 (720)
Q Consensus 644 ~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc 700 (720)
++|+.|++++|..-..+| .+|++|+.|++++| .++.+|..+.++++|+.|++.+|.
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 788888888775333333 34578999999998 688999888899999998887764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=218.99 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=158.7
Q ss_pred hccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccc--cCCccccCCcC
Q 047161 492 IELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR--QPVPSIFFPSR 568 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~--~~~~~~~~~~~ 568 (720)
+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 7778888899998888666666 56788888999999888766666777888889999999988876 34455555568
Q ss_pred CceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC--------CCCCCCCCCCcccccEEECCCCCCccccc-c
Q 047161 569 ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML--------PSLSGLCSLTELNLKKLNLRRNNFVSLRG-T 639 (720)
Q Consensus 569 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--------~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~ 639 (720)
+|+.|++++|.+..+++..+..+..++.++++.+....... ..+.++++| +.|+|++|.++.+|. .
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L-----~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL-----HILNLESNGFDEIPVEV 555 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-----CEEECCSSCCCCCCTTT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-----CEEECCCCCCCCCCHHH
Confidence 99999999999999988889999999999999887765421 125666665 788999999999985 5
Q ss_pred ccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccch-hhcc-CchhHhhhhhhcc
Q 047161 640 INHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATIS-DALR-SCNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp-~~~~-~~~~L~~l~~~~n 699 (720)
+.++++|+.|+|++| .++.+|.-. ++|+.|++++|. ++.++ ..+. .+++|+.+++..|
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTC
T ss_pred cccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEccCC
Confidence 799999999999998 577776421 679999999984 66666 4454 5788888777665
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=202.14 Aligned_cols=210 Identities=21% Similarity=0.316 Sum_probs=170.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
..++++.|+|++|. +..+|.. ++.+++|++|+|++|.+. .+|..++++++|++|+|++|.+.
T Consensus 79 ~~~~l~~L~L~~n~-------l~~lp~~---------l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVP-------LPQFPDQ---------AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140 (328)
T ss_dssp TSTTCCEEEEESSC-------CSSCCSC---------GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-
T ss_pred cccceeEEEccCCC-------chhcChh---------hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-
Confidence 35689999999988 6788887 888999999999999955 89999999999999999999755
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccC---------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFF---------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
.+|..++++++|++|++++|.+.+..|..+. .+++|+.|++++|.+..++
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--------------------- 199 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP--------------------- 199 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------------------
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------------------
Confidence 8899999999999999999877765554432 2488888888776544221
Q ss_pred cccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccch
Q 047161 606 ALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 606 ~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp 682 (720)
..++.+++| +.|+|++|.++.+|..+..+++|+.|++++|.....+|... ++|+.|++++|..++.+|
T Consensus 200 ----~~l~~l~~L-----~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 200 ----ASIANLQNL-----KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ----GGGGGCTTC-----CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred ----HhhcCCCCC-----CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 124556655 78899999999999999999999999999998888887532 679999999999999999
Q ss_pred hhccCchhHhhhhhhcc-cchhHHHHHhhcc
Q 047161 683 DALRSCNSATSRIFCIN-CPKLILNWLQQYS 712 (720)
Q Consensus 683 ~~~~~~~~L~~l~~~~n-c~~l~~~w~~~~~ 712 (720)
..+.++++|+.|++.+| ....+|.|+...+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 99999999999777753 2233566665433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=202.36 Aligned_cols=245 Identities=17% Similarity=0.211 Sum_probs=179.5
Q ss_pred CCcceEEEeccccCC------cccCccccceEEEecC-CCCC-CCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCC
Q 047161 382 TNLRLLKIHNLQLPA------GLESLSDELRLLQWHG-YPLK-SLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPD 452 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~------~~~~l~~~l~~L~~~~-~~~~-~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~ 452 (720)
.+++.|+++++.+.. .+..+ ..++.|++++ |.+. .+|..+. ..++++|++++|.+... .+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--------~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--------IPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE--------CCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc--------CCHH
Confidence 456677777765542 23332 3467777763 4443 5665553 56677777777665421 1223
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCc-ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC-CCCEEeccCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLT-TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK-SLRTVNLSRC 530 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~-~L~~L~L~~~ 530 (720)
|..+++|++|++++|. +. .+|.. ++.+++|++|++++|.+.+.+|..+++++ +|++|++++|
T Consensus 121 ~~~l~~L~~L~Ls~N~-------l~~~~p~~---------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-------LSGTLPPS---------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GGGCTTCCEEECCSSE-------EESCCCGG---------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred HhCCCCCCEEeCCCCc-------cCCcCChH---------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 7788889999998886 34 45655 78888999999999887778888888887 8999999988
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
.+.+.+|..+..++ |++|++++|.+.+.++..+..+++|+.|++++|.+.+..+. +..+..++.+++..+...+..+.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 87778888888887 99999999988887777777778899999988888765554 66778888888888877655555
Q ss_pred CCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccc
Q 047161 611 SLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRS 659 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 659 (720)
.+..+++| +.|+|++|.++ .+|.. ..+++|+.|++++|+.+..
T Consensus 263 ~l~~l~~L-----~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFL-----HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTC-----CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCC-----CEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 57777766 67888888888 56654 7788888888888875544
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=214.22 Aligned_cols=231 Identities=19% Similarity=0.228 Sum_probs=168.5
Q ss_pred cCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccch--------------h------------cHHHHHHHH
Q 047161 124 LGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEK--------------D------------GLIALQKQL 177 (720)
Q Consensus 124 ~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~--------------~------------~~~~~~~~i 177 (720)
+.....+|||+.++++|.+.|....++.++|+|+||||++.+.- | +...+...+
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 34567899999999999999976566789999999999932211 1 111222222
Q ss_pred H---Hhhhhc-c---cceeccchhhHHHHHHHHhc--CCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 178 L---SKTLME-I---DIEIRNDFDGIKMIKRELRR--RNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 178 l---~~~~~~-~---~~~~~~~~~~~~~l~~~l~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
. .. +.. . .....+.+.....++..+.+ +++||||||||+..+++. +++|++||||||+..++.
T Consensus 200 ~~l~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTR-LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHH-HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGT
T ss_pred HHHHHH-hccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHH
Confidence 2 12 111 0 11223445566778888876 799999999999877654 367999999999999987
Q ss_pred hccccceEec---CCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhc
Q 047161 249 TLRVDGVYKV---EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNK 325 (720)
Q Consensus 249 ~~~~~~~~~l---~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~ 325 (720)
.++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|||++.+|+.++.+. .+|+.+++.+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 654 345555 5899999999999999763 222345688999999999999999999998753 479998887764
Q ss_pred CC-----------chhHHHHHHhhhcCCchh----hhhhhcCCCCCC----Cccccchhh
Q 047161 326 HS-----------ADEILDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 326 ~~-----------~~~il~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
.. ...+..++..||+.|+.. +.+++.||.+.. .+..+|..+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 32 257899999999999987 778888987543 356667544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=211.72 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=175.9
Q ss_pred CCcceEEEeccccCCc----ccCccccceEEEecCCCCCCC-CCCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 382 TNLRLLKIHNLQLPAG----LESLSDELRLLQWHGYPLKSL-PSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~----~~~l~~~l~~L~~~~~~~~~l-p~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
++++.|++++|.+... +..+ ..++.|++++|.+..+ |..+ ...++++|++++|++..+ |.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------p~~-~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI----------SCH-P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE----------ECC-C
T ss_pred ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec----------Ccc-c
Confidence 5666677766665322 2222 3466777777766655 3333 345666677666665432 223 5
Q ss_pred CCCceeeecCCCCCCCCCCCCcc--cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCC--CEEeccCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTT--LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSL--RTVNLSRCS 531 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~--lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L--~~L~L~~~~ 531 (720)
+++|++|+|++|. +.. +|.. ++.+++|++|++++|.+.+ ..++.+++| ++|++++|.
T Consensus 89 l~~L~~L~L~~N~-------l~~~~~p~~---------~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-------FDALPICKE---------FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCCSEEECCSSC-------CSSCCCCGG---------GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred cCCccEEeccCCc-------cccccchhh---------hccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 6677777777766 333 3344 7778888888888887543 346667777 888888877
Q ss_pred C--CcccCcCcCCCC-----------------------------------------------------------------
Q 047161 532 K--LENMPESLGQME----------------------------------------------------------------- 544 (720)
Q Consensus 532 ~--l~~lp~~~~~L~----------------------------------------------------------------- 544 (720)
+ .+..|..+..+.
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 6 555565555533
Q ss_pred ------------------CCCEEeccCcccccCCcccc-----CCcCCceEEEeecCCCCCCCC----------------
Q 047161 545 ------------------SLEELDVSGTVIRQPVPSIF-----FPSRILKVYLFVDTRDHRTSS---------------- 585 (720)
Q Consensus 545 ------------------~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~---------------- 585 (720)
+|++|++++|.+.+..|... ..+++|+.+++..|.+ .++.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 67777777777774333322 2234444444444443 1110
Q ss_pred --------Cc-ccccccccccccCCCCcccccCCCCCCCCCCCccc---------------------ccEEECCCCCCcc
Q 047161 586 --------SS-WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN---------------------LKKLNLRRNNFVS 635 (720)
Q Consensus 586 --------~~-~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~---------------------L~~L~Ls~n~l~~ 635 (720)
.. +..+..++.++++.+......+..+..+++|+.|+ |+.|++++|.++.
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 00 14555666666666665554445566666664442 3667777777775
Q ss_pred -cccc-ccCCCCCceeeccccccccccC-CcccccceEeeecCcccccchhhccCchhHhhhhhhcccch
Q 047161 636 -LRGT-INHLPKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPK 702 (720)
Q Consensus 636 -lp~~-i~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~ 702 (720)
+|.. +..+++|+.|++++|..-..+| .+|++|+.|++++| .++.+|..+.++++|+.+++.+|.-.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC
Confidence 6643 5667777777777775333343 34568999999887 46789988889999999888766433
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-21 Score=204.67 Aligned_cols=273 Identities=12% Similarity=0.158 Sum_probs=207.7
Q ss_pred ccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCC
Q 047161 380 KMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAP 457 (720)
Q Consensus 380 ~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~ 457 (720)
.+.....++.+++.+..-...++..++.|++++|.+..+|. .+ ...+++.|++++|.+..+. ...|..++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~ 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--------EDSFSSLG 100 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCT
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC--------HhhcCCCC
Confidence 34445567777777655444556679999999999988876 33 4678889999888776532 12488899
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCCCCcc
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+|++|++++|. +..+|... ++.+++|++|++++|. +..+|. .++++++|++|++++|...+.
T Consensus 101 ~L~~L~Ls~n~-------l~~~~~~~--------~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 101 SLEHLDLSYNY-------LSNLSSSW--------FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TCCEEECCSSC-------CSSCCHHH--------HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCEEECCCCc-------CCcCCHhH--------hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccc
Confidence 99999999987 56666543 7789999999999998 456766 788999999999999854555
Q ss_pred c-CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC--
Q 047161 536 M-PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL-- 612 (720)
Q Consensus 536 l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l-- 612 (720)
+ |..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..++...+..+..++.+++..+.........+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 5 5678899999999999999998877777667899999999998877666666677888888888887666544432
Q ss_pred -CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc----ccccceEeeecCcc
Q 047161 613 -SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCTS 677 (720)
Q Consensus 613 -~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~~ 677 (720)
.....++.++|+.+.++++.+..+|.++..+++|+.|++++| .++.+|.- .++|++|++++++-
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 345567667777777777777788988999999999999998 46667641 15688888888763
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=210.01 Aligned_cols=293 Identities=17% Similarity=0.215 Sum_probs=215.5
Q ss_pred cchhccCCcceEEEeccccCCc--ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCC
Q 047161 376 TAFLKMTNLRLLKIHNLQLPAG--LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDF 453 (720)
Q Consensus 376 ~~~~~l~~L~~L~l~~~~l~~~--~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~ 453 (720)
+.+..+++|+.|++++|.+... +..+ ..++.|++++|.+..++......++++|+++++.+..+ +.+
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~ 130 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI----------DPL 130 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGG
T ss_pred cchhhhcCCCEEECCCCccCCchhhhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC----------hHH
Confidence 3567889999999999977432 3333 56999999999999888744578899999998876543 347
Q ss_pred CCCCCceeeecCCCC-----CCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEecc
Q 047161 454 TGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~-----~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~ 528 (720)
..+++|++|++++|. .+..+++|+.+.-......++ .++.+++|++|++++|.+ ..++ .+..+++|++|+++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIAT 207 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECC
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEec
Confidence 888899999998885 223344444332111001111 177888999999999884 4444 47888999999999
Q ss_pred CCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc
Q 047161 529 RCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM 608 (720)
Q Consensus 529 ~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 608 (720)
+|.+.+..| ++.+++|++|++++|.+.+.+ .+ ..+++|+.|++++|.+....+ +..+..++.+.+..+......
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 987655444 778889999999999888763 33 334889999999988877655 778888888888887665432
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccchhhcc
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
.+..+++| +.|++++|.++.++. +..+++|+.|++++|+ +..++.+. ++|+.|++++|. +..++ .+.
T Consensus 282 --~~~~l~~L-----~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~ 350 (466)
T 1o6v_A 282 --PLAGLTAL-----TNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDVS-SLA 350 (466)
T ss_dssp --GGTTCTTC-----SEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCG-GGT
T ss_pred --cccCCCcc-----CeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCch-hhc
Confidence 26666665 788899999998875 7889999999999995 54444332 679999999984 66664 678
Q ss_pred CchhHhhhhhhcc
Q 047161 687 SCNSATSRIFCIN 699 (720)
Q Consensus 687 ~~~~L~~l~~~~n 699 (720)
++++|+.+.+.+|
T Consensus 351 ~l~~L~~L~l~~n 363 (466)
T 1o6v_A 351 NLTNINWLSAGHN 363 (466)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCCCEEeCCCC
Confidence 8999999777654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=189.02 Aligned_cols=221 Identities=19% Similarity=0.202 Sum_probs=170.9
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.+..+|..+ ..++++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~-------l~~~~~~~-- 75 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNV-------LARIDAAA-- 75 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSC-------CCEECTTT--
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCH--------HHcccCCCCCEEECCCCc-------cceeCHhh--
Confidence 45666677777777654 3567777777776654321 237788899999999886 45553322
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
++.+++|++|++++|..++.+ |..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++..+
T Consensus 76 ------~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 76 ------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp ------TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ------cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 778899999999998734444 7788889999999999987776667778889999999999999988888766
Q ss_pred CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCC
Q 047161 565 FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHL 643 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l 643 (720)
..+++|+.|++++|.+..+++..+..+..++.+++..+.........+..+++| +.|++++|.++.+| ..+..+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-----MTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----CEEECCSSCCSCCCHHHHTTC
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc-----cEeeCCCCcCCcCCHHHcccC
Confidence 666899999999888888877778888888888888887766666667777776 77888899888877 457888
Q ss_pred CCCceeeccccc
Q 047161 644 PKFKHLKLDDCK 655 (720)
Q Consensus 644 ~~L~~L~L~~c~ 655 (720)
++|+.|++++|+
T Consensus 225 ~~L~~L~l~~N~ 236 (285)
T 1ozn_A 225 RALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEeccCCC
Confidence 999999999886
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-21 Score=225.80 Aligned_cols=307 Identities=15% Similarity=0.126 Sum_probs=194.2
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCCc------ccCccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPAG------LESLSD 403 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~------~~~l~~ 403 (720)
++.|++|+|...... .|..+..+.+|..++...+.+... ..|.++.+|+.|++++|.+... +.. ..
T Consensus 50 L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~ 123 (844)
T 3j0a_A 50 LQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN-LK 123 (844)
T ss_dssp CSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS-CS
T ss_pred CeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc-cC
Confidence 455666666432221 144555666666665555544432 3566677777777766655321 222 23
Q ss_pred cceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhc------c----------Ccc--ccCCCCCCC-----
Q 047161 404 ELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGI------K----------NLI--RTPDFTGAP----- 457 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~------~----------~l~--~~~~~~~l~----- 457 (720)
.++.|++++|.+..++. .+ ...++++|++++|.+....... . .+. .+..+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 46667777766665532 22 3556666666666553221000 0 000 111233333
Q ss_pred -CceeeecCCCCCCCCCCCCcccCccchh---------------------------hhHHHHhcc--CCCCcEEeccCCC
Q 047161 458 -NLEELILDGCKRLQNCTSLTTLPREIAT---------------------------ESLQKLIEL--LTGLVFLNLNDCK 507 (720)
Q Consensus 458 -~L~~L~L~~~~~l~~~~~L~~lp~~~~~---------------------------~~l~~~i~~--l~~L~~L~Ls~n~ 507 (720)
.|+.|++++|..- ..++..+.. ...+..+.. .++|+.|++++|.
T Consensus 204 ~~L~~L~Ls~n~l~------~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 204 MVLEILDVSGNGWT------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp CCBSEEBCSSCCSS------TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CceeEEecCCCcCc------hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 3888888887521 112211100 000111222 2689999999999
Q ss_pred CCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCc
Q 047161 508 ILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSS 587 (720)
Q Consensus 508 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 587 (720)
+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 87777889999999999999999888888889999999999999999999998877777799999999999999999999
Q ss_pred ccccccccccccCCCCcccccCCCCCCCCCCCcc---------------cccEEECCCCCCccccc--cccCCCCCceee
Q 047161 588 WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL---------------NLKKLNLRRNNFVSLRG--TINHLPKFKHLK 650 (720)
Q Consensus 588 ~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L---------------~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~ 650 (720)
|..+..|+.+++..+...... .+++|+.| +++.|++++|.++.++. .+.++++|+.|+
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 999999999999887654321 23333322 23556666666665432 344667777777
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|++|.
T Consensus 433 Ls~N~ 437 (844)
T 3j0a_A 433 LNQNR 437 (844)
T ss_dssp EESCC
T ss_pred CCCCc
Confidence 77764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=200.29 Aligned_cols=272 Identities=16% Similarity=0.145 Sum_probs=211.7
Q ss_pred chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.++++++|+.|++++|.+.. ++..+ ..++.|++++|.+..+| .....++++|++++|.+..+ + ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~----------~-~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL----------D-VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC----------C-CT
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee----------e-cC
Confidence 67889999999999998753 33333 46999999999999987 44568899999999887543 2 78
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
.+++|++|++++|. +..+| ++.+++|++|++++|.+.+ +| ++++++|++|++++|...+
T Consensus 104 ~l~~L~~L~L~~N~-------l~~l~-----------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-------LTKLD-----------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TCTTCCEEECCSSC-------CSCCC-----------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCC
T ss_pred CCCcCCEEECCCCc-------CCeec-----------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccc
Confidence 99999999999997 44443 6679999999999999554 54 8899999999999998777
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~ 614 (720)
.+ .++.+++|++|++++|.+.+++ +..+++|+.|++++|.+..+ .+..+..++.+++..+.... +| +..
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip-~~~ 231 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID-VTP 231 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC-CTT
T ss_pred cc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC-ccc
Confidence 77 4889999999999999999976 33448999999999998886 47788899999999888766 33 677
Q ss_pred CCCCCcccccEEECCCCCCccccc-cccCCC-------CCceeeccccccccccCCcc-cccceEeeecCcccccchhh-
Q 047161 615 LCSLTELNLKKLNLRRNNFVSLRG-TINHLP-------KFKHLKLDDCKRLRSLSELP-SDIKKVRVHGCTSLATISDA- 684 (720)
Q Consensus 615 l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~-------~L~~L~L~~c~~L~~lp~lp-~~L~~L~l~~c~~L~~lp~~- 684 (720)
+++| +.|++++|.++.+|. .+.++. +|+.|++++|+.+..+|.-. ++|+.|++++|..++.+|..
T Consensus 232 l~~L-----~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 232 LTQL-----TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp CTTC-----SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred cCCC-----CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC
Confidence 7766 788999999998772 233333 45566677776666665321 67999999999988888853
Q ss_pred -------ccCchhHhhhhhhc
Q 047161 685 -------LRSCNSATSRIFCI 698 (720)
Q Consensus 685 -------~~~~~~L~~l~~~~ 698 (720)
+.++++|+.|.+..
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTT
T ss_pred CcceEechhhcccCCEEECCC
Confidence 33445555544443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=200.97 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=195.4
Q ss_pred ccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccC
Q 047161 403 DELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLP 480 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp 480 (720)
..++.+++.++.++.+|..+ ...+++.|+++++.+..+.. ..|..+++|++|+|++|. +..++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~ 109 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNA-------IRYLP 109 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSC-------CCCCC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--------hhccCCCCcCEEECCCCC-------CCcCC
Confidence 56899999999999999753 36789999999988765422 258899999999999987 56665
Q ss_pred ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC
Q 047161 481 REIATESLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 481 ~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
... ++.+++|++|++++|.+ ..+|.. ++++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.
T Consensus 110 ~~~--------~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 110 PHV--------FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTT--------TTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred HHH--------hcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 543 78899999999999984 567766 58999999999999987776677899999999999999999887
Q ss_pred CccccCCcCCceEEEeecCCCCC-------------------CCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 560 VPSIFFPSRILKVYLFVDTRDHR-------------------TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 560 ~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+.... ++|+.|++++|.+.. ++... ...++.+.+..+..... +.+..+++|
T Consensus 181 ~~~~l---~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L-- 250 (390)
T 3o6n_A 181 DLSLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGL-- 250 (390)
T ss_dssp CGGGC---TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTC--
T ss_pred ccccc---cccceeecccccccccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCc--
Confidence 54332 566666665554443 22111 23455555655554432 335555554
Q ss_pred ccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhh
Q 047161 621 LNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~ 696 (720)
+.|++++|.++.+ |..+..+++|+.|++++| .+..+|.. .++|+.|++++| .+..+|..+..+++|+.|++
T Consensus 251 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 251 ---VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---SEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEEC
T ss_pred ---cEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEEC
Confidence 7889999999866 678899999999999998 46666542 267999999998 57789988888899998777
Q ss_pred hcc
Q 047161 697 CIN 699 (720)
Q Consensus 697 ~~n 699 (720)
.+|
T Consensus 326 ~~N 328 (390)
T 3o6n_A 326 DHN 328 (390)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=212.82 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=117.1
Q ss_pred chhccCCcceEEEeccccC----CcccCccccceEEEecCCCCCCCCCC-C-CCCcceEeeCCCCchhHHhhhccCcccc
Q 047161 377 AFLKMTNLRLLKIHNLQLP----AGLESLSDELRLLQWHGYPLKSLPSS-M-EMDKTLECNMCYRRIEQFWKGIKNLIRT 450 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~~L~~~~~~~~~lp~~-~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~ 450 (720)
.|.++++|++|++++|.+. ..+..+ ..++.|++++|.+..+|.. + ...++++|++++|.+..+. .+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~ 116 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------VT 116 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-------SS
T ss_pred hhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-------hh
Confidence 6788888888888888662 334333 4588888888888877753 3 4567888888887765321 12
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
+.++.+++|++|++++|..+ ..+|... ++.+++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~------~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETF------SEIRRID--------FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSC------CEECTTT--------TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred hhhhccCCccEEECCCCccc------cccCHhh--------hhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 35778888888888887633 4555322 778888999999998877778888888999999999887
Q ss_pred CCCcccCcC-cCCCCCCCEEeccCcccccC
Q 047161 531 SKLENMPES-LGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 531 ~~l~~lp~~-~~~L~~L~~L~L~~n~l~~~ 559 (720)
.. +.+|.. ++.+++|++|++++|.+.+.
T Consensus 183 ~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 183 ES-AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp BS-TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cc-cccchhhHhhcccccEEEccCCccccc
Confidence 53 445544 35688999999999988774
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-20 Score=189.82 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=135.4
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCccc---Cccch
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTL---PREIA 484 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~l---p~~~~ 484 (720)
++.+++.++.+|..+. .++++|+++++.+..+... .|..+++|++|+|++|. +..+ +..
T Consensus 12 l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~--------~~~~l~~L~~L~L~~n~-------l~~~~~~~~~-- 73 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSSNG-------LSFKGCCSQS-- 73 (306)
T ss_dssp EECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSSC-------CCEEEEEEHH--
T ss_pred EEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHh--------HhhccccCCEEECCCCc-------cCcccCcccc--
Confidence 3444444445554332 3444555554444322111 15566666666666665 2222 222
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|++++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++..
T Consensus 74 -------~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 74 -------DFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp -------HHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred -------cccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 4456666666666666 34556666666666666666664332222 35666666666666666666666555
Q ss_pred cCCcCCceEEEeecCCCCC-CCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-ccc
Q 047161 564 FFPSRILKVYLFVDTRDHR-TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TIN 641 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~ 641 (720)
+..+++|+.|++++|.+.. ..+..+..+..++.++++.+.........+..+++| +.|++++|.++.+|. .+.
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-----QVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----CEEECTTSCCSBCCSGGGT
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-----CEEECCCCccCccChhhcc
Confidence 5545666666666665544 344455555556666665555544444446666655 667777777776653 567
Q ss_pred CCCCCceeeccccccccccC----CcccccceEeeecCc
Q 047161 642 HLPKFKHLKLDDCKRLRSLS----ELPSDIKKVRVHGCT 676 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp----~lp~~L~~L~l~~c~ 676 (720)
.+++|+.|++++|+.-...| .+|++|+.|++++++
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 77788888888775322222 345567777777765
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=211.55 Aligned_cols=258 Identities=14% Similarity=0.161 Sum_probs=198.2
Q ss_pred ccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccC
Q 047161 403 DELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLP 480 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp 480 (720)
..++.+.+.++.+..+|..+ ...+++.|+++++.+..+. +..|+.+++|++|+|++|. +..+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~-------l~~~~ 115 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------TYAFAYAHTIQKLYMGFNA-------IRYLP 115 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCCCC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--------hHHhcCCCCCCEEECCCCc-------CCCCC
Confidence 45789999999999999754 3578999999998876542 2258899999999999997 56676
Q ss_pred ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC
Q 047161 481 REIATESLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 481 ~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
... ++.+++|++|+|++|.+. .+|.. ++++++|++|+|++|.+.+..|..++++++|++|++++|.+.+.
T Consensus 116 ~~~--------~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 116 PHV--------FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTT--------TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred HHH--------HcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 653 788999999999999854 56655 58999999999999988777778899999999999999999987
Q ss_pred CccccCCcCCceEEEeecCCCCC-------------------CCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 560 VPSIFFPSRILKVYLFVDTRDHR-------------------TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 560 ~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+...+ ++|+.|++++|.+.. ++...+ ..+..+.+..+...+ ++.+..+++|
T Consensus 187 ~~~~l---~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~--~~~l~~l~~L-- 256 (597)
T 3oja_B 187 DLSLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD--TAWLLNYPGL-- 256 (597)
T ss_dssp CGGGC---TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCC--CGGGGGCTTC--
T ss_pred Chhhh---hhhhhhhcccCccccccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCC--ChhhccCCCC--
Confidence 64432 566666665554443 222211 245555666555443 2345566655
Q ss_pred ccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhh
Q 047161 621 LNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~ 696 (720)
+.|+|++|.+..+ |..+..+++|+.|+|++| .+..+|.. .++|+.|++++|. +..+|..+..+++|+.|++
T Consensus 257 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 257 ---VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---SEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEEC
T ss_pred ---CEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEEC
Confidence 7889999999866 678999999999999998 46666643 2679999999985 6689988888999999887
Q ss_pred hcc
Q 047161 697 CIN 699 (720)
Q Consensus 697 ~~n 699 (720)
.+|
T Consensus 332 ~~N 334 (597)
T 3oja_B 332 DHN 334 (597)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=197.28 Aligned_cols=241 Identities=20% Similarity=0.197 Sum_probs=185.7
Q ss_pred ceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 385 RLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 385 ~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..++..+..+......++..++.|++++|.+..++. .+ ...+++.|++++|.+..+.. ..|.++++|++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--------GAFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG--------GGGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh--------hhccCCccCCEE
Confidence 345555555544444556778888898888887763 33 45778888888887765422 247788899999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLG 541 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~ 541 (720)
+|++|. +..+|... +..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+.
T Consensus 118 ~L~~n~-------l~~~~~~~--------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 118 ELFDNR-------LTTIPNGA--------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp ECCSSC-------CSSCCTTT--------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ECCCCc-------CCeeCHhH--------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence 999886 56776543 77889999999999886554455788899999999998777777775 588
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
++++|++|++++|.+..++. +. .+++|+.|++++|.+..+.+..|..+..|+.+.+..+.........+.++++|
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--- 257 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL--- 257 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC---
T ss_pred cccccCeecCCCCcCccccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC---
Confidence 89999999999998887763 33 34889999999998888888888888899999888888777666668888776
Q ss_pred cccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 622 NLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 258 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 --VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 778888998888874 45788899999998876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=192.29 Aligned_cols=263 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhh----------ccCccccC
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKG----------IKNLIRTP 451 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~----------~~~l~~~~ 451 (720)
.+|+.|++++|.+.. +...+..++.|++++|.+..+|......++++|++++|++..+... .+.+..+|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~ 189 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred CCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc
Confidence 455555555555432 3334456777888888777777544466777888877766543221 12344456
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.++.+++|++|++++|. +..+|.. .++|++|++++|.+ ..+|. ++.+++|++|++++|.
T Consensus 190 ~~~~l~~L~~L~l~~N~-------l~~l~~~------------~~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNS-------LKKLPDL------------PLSLESIVAGNNIL-EELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCTTCTTCCEEECCSSC-------CSSCCCC------------CTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSC
T ss_pred cccCCCCCCEEECCCCc-------CCcCCCC------------cCcccEEECcCCcC-Ccccc-cCCCCCCCEEECCCCc
Confidence 67777777778777776 3334432 24677777777763 46663 6777777777777765
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCc---------------cccc-cccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSS---------------WHLW-FPFS 595 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------~~~l-~~l~ 595 (720)
+. .+|.. +++|++|++++|.+.++|.. +++|+.|++++|.+.+++... +..+ ..++
T Consensus 249 l~-~l~~~---~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~ 320 (454)
T 1jl5_A 249 LK-TLPDL---PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320 (454)
T ss_dssp CS-SCCSC---CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred CC-ccccc---ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence 43 35542 35667777777766665432 155666666666555432110 0111 2455
Q ss_pred ccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc-----------
Q 047161 596 LMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP----------- 664 (720)
Q Consensus 596 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp----------- 664 (720)
.++++.+.... ++. .++ +|+.|++++|.++.+|. .+++|++|++++|+ +..+|.+|
T Consensus 321 ~L~Ls~N~l~~--lp~--~~~-----~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 321 ELNVSNNKLIE--LPA--LPP-----RLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp EEECCSSCCSC--CCC--CCT-----TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC-
T ss_pred EEECCCCcccc--ccc--cCC-----cCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhhccc
Confidence 55555544332 221 123 34889999999999987 47899999999985 55544433
Q ss_pred --------cccceEeeecCcccc--cchhhccC
Q 047161 665 --------SDIKKVRVHGCTSLA--TISDALRS 687 (720)
Q Consensus 665 --------~~L~~L~l~~c~~L~--~lp~~~~~ 687 (720)
++|+.|+++++.-.+ .+|.++..
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp ---------------------------------
T ss_pred ccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 567888888876444 66665443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=189.20 Aligned_cols=258 Identities=19% Similarity=0.268 Sum_probs=203.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCccc-Ccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTL-PRE 482 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~l-p~~ 482 (720)
.++.++++++.+..+|..+. ..++.|+++++++..+.. ..|..+++|++|+|++|. +..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKD--------GDFKNLKNLHTLILINNK-------ISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSC-------CCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeCh--------hhhccCCCCCEEECCCCc-------CCeeCHHH
Confidence 57889999999999998764 578899999998765422 248899999999999987 5566 444
Q ss_pred chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc--CC
Q 047161 483 IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ--PV 560 (720)
Q Consensus 483 ~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~--~~ 560 (720)
++.+++|++|++++|. +..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..
T Consensus 96 ---------~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 ---------FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp ---------TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred ---------hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 8889999999999998 568888775 899999999997766556678999999999999999864 55
Q ss_pred ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cc
Q 047161 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GT 639 (720)
Q Consensus 561 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~ 639 (720)
+..+..+++|+.|++++|.+..++...+ ..++.+++..+.........+.++++| +.|++++|.++.++ ..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNL-----AKLGLSFNSISAVDNGS 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTC-----CEEECCSSCCCEECTTT
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCC-----CEEECCCCcCceeChhh
Confidence 5556666999999999999888766544 678888888887766655568888876 78899999999876 47
Q ss_pred ccCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchh-hccC------chhHhhhhhhcc
Q 047161 640 INHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISD-ALRS------CNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~-~~~~------~~~L~~l~~~~n 699 (720)
+..+++|+.|++++| .+..+|. +. ++|++|++++|. ++.+|. .+.. .++|..+.+..|
T Consensus 236 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 236 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecC
Confidence 899999999999999 4667764 22 679999999875 666663 3322 245555555544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=199.08 Aligned_cols=265 Identities=21% Similarity=0.163 Sum_probs=191.9
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
.+++.++++++.+..-...++..++.|++++|.++.+|. ...++..|++++|++..+ |. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l----------p~--~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSL----------PV--LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCC----------CC--CCTTCCE
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcC----------CC--CCCCCCE
Confidence 357788888887754333445678899999998888887 457888888888876532 33 6788999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|+|++|. +..+|.. +++|++|++++|. +..+|.. +++|++|++++|.+ ..+|..
T Consensus 106 L~Ls~N~-------l~~l~~~------------l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~-- 159 (622)
T 3g06_A 106 LSIFSNP-------LTHLPAL------------PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPAL-- 159 (622)
T ss_dssp EEECSCC-------CCCCCCC------------CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCC--
T ss_pred EECcCCc-------CCCCCCC------------CCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCc--
Confidence 9998886 4566553 6778888998887 4557764 48888999988854 456653
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
+++|+.|++++|.+.+++ ..+++|+.|++++|.+..++.. +..+..+.+..+.... ++. .+++
T Consensus 160 -~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~--l~~--~~~~---- 222 (622)
T 3g06_A 160 -PSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTS--LPA--LPSG---- 222 (622)
T ss_dssp -CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS--CCC--CCTT----
T ss_pred -cCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccc--cCC--CCCC----
Confidence 467888888888888876 2237888888888887775542 3566666666665442 221 1233
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcccc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCP 701 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~ 701 (720)
|+.|++++|.++.+| ..+++|+.|+|++| .+..+|..+++|+.|++++| .+..+|..+.++++|+.+++.+|.-
T Consensus 223 -L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 223 -LKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -CCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 478888999998888 45688999999998 67788887788999999987 4778898888999998877776632
Q ss_pred -hhHHHHHh
Q 047161 702 -KLILNWLQ 709 (720)
Q Consensus 702 -~l~~~w~~ 709 (720)
...+..+.
T Consensus 297 ~~~~~~~l~ 305 (622)
T 3g06_A 297 SERTLQALR 305 (622)
T ss_dssp CHHHHHHHH
T ss_pred CCcCHHHHH
Confidence 33344443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=196.42 Aligned_cols=241 Identities=20% Similarity=0.166 Sum_probs=189.9
Q ss_pred ceEEEeccccCCcccCccccceEEEecCCCCCCCC-CCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 385 RLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLP-SSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 385 ~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp-~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..++..+..+......++..++.|++++|.+..++ ..| ...+++.|++++|.+..+. ...|.++++|++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--------VGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEE
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--------hhhccCcccCCEE
Confidence 44555555554434455677889999999888774 344 4678888999888776542 2347889999999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLG 541 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~ 541 (720)
+|++|. +..+|... +..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+.
T Consensus 129 ~L~~n~-------l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 129 ELFDNW-------LTVIPSGA--------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp ECCSSC-------CSBCCTTT--------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ECCCCc-------CCccChhh--------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence 999987 56777654 77899999999999986544445788999999999999878887775 588
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
.+++|++|++++|.+.+++ .+.. +++|+.|++++|.+..+.+..|..+..|+.+.+..+.........+.++++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--- 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMP-NLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL--- 268 (452)
T ss_dssp TCTTCCEEECTTSCCSSCC-CCTT-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC---
T ss_pred CCCCCCEEECCCCcccccc-cccc-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC---
Confidence 8999999999999998875 3333 4899999999999998888889999999999998888777766678888876
Q ss_pred cccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 622 NLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 269 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 --VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 788889999998874 46788999999999886
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=187.79 Aligned_cols=258 Identities=18% Similarity=0.268 Sum_probs=203.2
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.++++++.+..+|..+. ..++.|+++++.+..+. ...|..+++|++|++++|. +..++...
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~--------~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELR--------KDDFKGLQHLYALVLVNNK-------ISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccC--------HhHhhCCCCCcEEECCCCc-------cCccCHhH
Confidence 57889999999999998774 68899999999876542 1248899999999999997 56664332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc--CCc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ--PVP 561 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~--~~~ 561 (720)
++.+++|++|++++|. +..+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+
T Consensus 98 --------~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 98 --------FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp --------STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred --------hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 8889999999999998 568888775 899999999997665444568999999999999999964 666
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i 640 (720)
..+..+ +|+.|++++|.+..++...+ ..++.+++..+.........+..+++| +.|++++|.++.++ .++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L-----~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKL-----YRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTC-----SCCBCCSSCCCCCCTTGG
T ss_pred ccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCC-----CEEECCCCcCCcCChhHh
Confidence 666664 89999999999988766544 577888888887776666668888877 67788999999876 478
Q ss_pred cCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccch-hhccC------chhHhhhhhhcc
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATIS-DALRS------CNSATSRIFCIN 699 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp-~~~~~------~~~L~~l~~~~n 699 (720)
..+++|+.|++++| .+..+|. +. ++|+.|+++++. ++.+| ..+.+ ..+|+.+.+..|
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecC
Confidence 99999999999999 4667765 22 679999999975 66666 34433 345666555543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=192.68 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=171.8
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
....++..+..+..+|..+. ..++.|++++|++..+.. ..|..+++|++|+|++|. +..++...
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~-------i~~i~~~~ 107 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKV--------NSFKHLRHLEILQLSRNH-------IRTIEIGA 107 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECT--------TTTSSCSSCCEEECCSSC-------CCEECGGG
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCH--------HHhhCCCCCCEEECCCCc-------CCccChhh
Confidence 35567888888999998764 578888888888765432 348889999999999987 56666443
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
|..+++|++|+|++|.+....+..+.++++|++|+|++|.+....+..+.++++|++|++++| .+..+++.
T Consensus 108 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 108 --------FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp --------GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred --------ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 788999999999999855444457889999999999998766555557889999999999984 45666666
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~ 641 (720)
.+..+++|+.|++++|.+..++ .+..+..|+.++++.|.........+.++++| +.|+|++|.++.++ ..+.
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-----QKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-----CEEECTTCCCCEECTTSST
T ss_pred hhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC-----CEEECCCCceeEEChhhhc
Confidence 6666789999999888777654 35666667777777666655555556666655 56666777776553 4566
Q ss_pred CCCCCceeeccccccccccCC--c--ccccceEeeecCc
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCT 676 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~ 676 (720)
++++|+.|+|++| .+..+|. + .++|+.|++++++
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 6777777777776 3444442 1 1446666666544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=187.12 Aligned_cols=234 Identities=19% Similarity=0.249 Sum_probs=191.9
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC--cccCCCCCCCCCCCEEeccCCCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL--VRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~--~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
.++|++|+|++|. +..+|... ++.+++|++|++++|.+. +..|..+..+++|++|++++|. +
T Consensus 27 ~~~l~~L~L~~n~-------l~~i~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i 90 (306)
T 2z66_A 27 PSSATRLELESNK-------LQSLPHGV--------FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-V 90 (306)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-E
T ss_pred CCCCCEEECCCCc-------cCccCHhH--------hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-c
Confidence 4689999999997 67788764 688999999999999854 2236677789999999999985 5
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccc-cCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL-MLPS 611 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~-~~~~ 611 (720)
..+|..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+....+..+..+..++.+.+..+..... ....
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 5688889999999999999999999876 4555569999999999999988888899999999999998877663 3445
Q ss_pred CCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccchhhcc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
+..+++| +.|++++|.++.+ |..+..+++|+.|++++|. +..++..+ ++|+.|++++|.-....|..+.
T Consensus 171 ~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 171 FTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp CTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred HhhCcCC-----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 7888876 7889999999987 6788999999999999995 55555422 6799999999987777778888
Q ss_pred Cch-hHhhhhhhcc---c--c-hhHHHHHhhc
Q 047161 687 SCN-SATSRIFCIN---C--P-KLILNWLQQY 711 (720)
Q Consensus 687 ~~~-~L~~l~~~~n---c--~-~l~~~w~~~~ 711 (720)
.++ +|+.+++..| | + .....|+...
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 884 8999888776 3 3 2346788653
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=204.29 Aligned_cols=86 Identities=21% Similarity=0.182 Sum_probs=40.6
Q ss_pred hccCCCCcEEeccCCCCCc-ccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCC----CEEeccCcccccCCccccCC
Q 047161 492 IELLTGLVFLNLNDCKILV-RLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL----EELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L----~~L~L~~n~l~~~~~~~~~~ 566 (720)
++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++| +.|++++|.+.+.++..+..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 4445555555555554332 244455555555555555544433333444444444 45555555555544444443
Q ss_pred cCCceEEEeecC
Q 047161 567 SRILKVYLFVDT 578 (720)
Q Consensus 567 ~~~L~~L~l~~~ 578 (720)
.+|+.|++.+|
T Consensus 200 -~~L~~L~l~~n 210 (570)
T 2z63_A 200 -IRLHKLTLRNN 210 (570)
T ss_dssp -CEEEEEEEESC
T ss_pred -CcceeEecccc
Confidence 24555554443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.6e-19 Score=192.80 Aligned_cols=220 Identities=17% Similarity=0.122 Sum_probs=133.9
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
....++..+..+..+|..+. .+++.|++++|++..+. ...|..+++|++|+|++|. +..++...
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~--------~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~ 118 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQ--------ADTFRHLHHLEVLQLGRNS-------IRQIEVGA 118 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCEECTTT
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceEC--------HHHcCCCCCCCEEECCCCc-------cCCcChhh
Confidence 34567777888888887654 56777777777765432 2346777778888887776 45555332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
+..+++|++|+|++|.+....+..++++++|++|+|++|.+....+..+.++++|++|++++| .+..+++.
T Consensus 119 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 119 --------FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp --------TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred --------ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 667777888888877754444445777778888888777655433446777778888888773 45555555
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc-ccccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~ 641 (720)
.+..+++|+.|++++|.+..++ .+..+..|+.++++.+.........+.++++| +.|+|++|.++.+ |..+.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL-----KKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-----CEEECTTSCCCEECTTTTT
T ss_pred hccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCC-----CEEEeCCCcCceECHHHhc
Confidence 5555577777777777665542 24444455555555444444333334444443 4444555555443 23444
Q ss_pred CCCCCceeecccc
Q 047161 642 HLPKFKHLKLDDC 654 (720)
Q Consensus 642 ~l~~L~~L~L~~c 654 (720)
++++|+.|+|++|
T Consensus 264 ~l~~L~~L~L~~N 276 (452)
T 3zyi_A 264 GLASLVELNLAHN 276 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 5555555555555
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=189.78 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=199.2
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
..+.+++.++.+|..+. .++++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~--- 95 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISN--------SDLQRCVNLQALVLTSNG-------INTIEEDS--- 95 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSC-------CCEECTTT---
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCH--------HHhccCCCCCEEECCCCc-------cCccCHhh---
Confidence 47788899999998765 488899999888765422 248889999999999987 56665432
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCc--CcCCCCCCCEEeccCc-ccccCCcc
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
++.+++|++|++++|.+. .+|.. ++++++|++|++++|.+. .+|. .+.++++|++|++++| .+...++.
T Consensus 96 -----~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 96 -----FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp -----TTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred -----cCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 788999999999999854 55554 788999999999998644 5665 6889999999999998 47777776
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccc-
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTI- 640 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i- 640 (720)
.+..+++|+.|++++|.+....+..+..+..++.+++..+.........+..+++| +.|++++|.++.++ ..+
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-----~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-----ECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE-----EEEEEESCBCTTCCCC---
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc-----cEEECCCCccccccccccc
Confidence 66666899999999998888888888888888888887766432221113334544 77788888877654 222
Q ss_pred --cCCCCCceeecccccc----ccccCC---cccccceEeeecCcccccchhh-ccCchhHhhhhhhcc-----cchh--
Q 047161 641 --NHLPKFKHLKLDDCKR----LRSLSE---LPSDIKKVRVHGCTSLATISDA-LRSCNSATSRIFCIN-----CPKL-- 703 (720)
Q Consensus 641 --~~l~~L~~L~L~~c~~----L~~lp~---lp~~L~~L~l~~c~~L~~lp~~-~~~~~~L~~l~~~~n-----c~~l-- 703 (720)
...+.++.++++++.- +..+|. -.++|+.|++++|. ++.+|.. +.++++|+.+++..| ||.+
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~ 322 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHH
Confidence 3456777788877641 112332 11579999999974 7789977 488999999888776 5544
Q ss_pred HHHHHhhc
Q 047161 704 ILNWLQQY 711 (720)
Q Consensus 704 ~~~w~~~~ 711 (720)
+..|+...
T Consensus 323 l~~~~~~~ 330 (353)
T 2z80_A 323 LSRWLNKN 330 (353)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 46787653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-18 Score=174.66 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=157.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
-.++|++|++++|. +..++... +..+++|++|++++|.+.+..|..++++++|++|++++|..++
T Consensus 30 ~~~~l~~L~l~~n~-------i~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-------ISHVPAAS--------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCTTCSEEECTTSC-------CCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred CCCCceEEEeeCCc-------CCccCHHH--------cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 35789999999987 57777543 7889999999999998766668899999999999999997455
Q ss_pred cc-CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 535 NM-PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 535 ~l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
.+ |..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..+..+..++.+++..+.........+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 55 77899999999999999999999888777779999999999988888777777788888888877766554444466
Q ss_pred CCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCC--c--ccccceEeeecCc
Q 047161 614 GLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCT 676 (720)
Q Consensus 614 ~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~ 676 (720)
++++| +.|++++|.++.+ |.++..+++|+.|++++|. +..+|. + .++|+.|++++++
T Consensus 175 ~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSL-----DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTC-----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Ccccc-----CEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 66665 6777788877765 6677778888888888873 444432 1 1457777777665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=177.61 Aligned_cols=213 Identities=12% Similarity=0.140 Sum_probs=142.3
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+.|++++|. +..++. ++.+++|++|++++|.+. .+| .++++++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~-------i~~~~~----------l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCC
T ss_pred cccccceeeeeeCCCC-------cccccc----------cccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCcc
Confidence 4455666677776665 333332 556667777777766633 233 566667777777776655
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
.+..|..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..+..+..|+.+++..+.........+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 44444446666777777777777666666655555667777777666666666666666666666666666554444446
Q ss_pred CCCCCCCcccccEEECCCCCCccccc-cccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchhH
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
..+++| +.|++++|.++.+|. .+..+++|+.|++++|+.. .-.+.|+.|.+..+..-+.+|.++..++..
T Consensus 178 ~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 178 DKLTQL-----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTCTTC-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cCCccC-----CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 777766 788899999998774 4688999999999999733 333468888888877778888888776654
Q ss_pred hh
Q 047161 692 TS 693 (720)
Q Consensus 692 ~~ 693 (720)
..
T Consensus 249 ~~ 250 (272)
T 3rfs_A 249 SA 250 (272)
T ss_dssp GS
T ss_pred CC
Confidence 43
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=204.07 Aligned_cols=209 Identities=20% Similarity=0.257 Sum_probs=146.7
Q ss_pred CCCCcEEeccCCCCC--cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCC-ccccCCcCCce
Q 047161 495 LTGLVFLNLNDCKIL--VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPSRILK 571 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~--~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~~~L~ 571 (720)
+++|++|++++|.+. +..|..+..+.+|++|+++.|. ....+..+..+++|+.+++.++...... ...+..+.+++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccc
Confidence 445555555555432 1223333445555555555543 2334556777888888888877665543 34455568888
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCcee
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHL 649 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L 649 (720)
.++++.|.+....+..+..+..++.+.+..++......+ .+..+++| +.|+|++|+++.+ |..+.++++|+.|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-----~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-----CEEECCCCccCCcChHHHcCCCCCCEE
Confidence 999988888888888888889999999888775554444 47777776 7889999999987 5778999999999
Q ss_pred eccccccccccCCcc----cccceEeeecCcccccchhhccCc-hhHhhhhhhcc-----cc-hhHHHHHhh
Q 047161 650 KLDDCKRLRSLSELP----SDIKKVRVHGCTSLATISDALRSC-NSATSRIFCIN-----CP-KLILNWLQQ 710 (720)
Q Consensus 650 ~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp~~~~~~-~~L~~l~~~~n-----c~-~l~~~w~~~ 710 (720)
+|++| .+..++..+ ++|+.|+++++.-....|..+.++ ++|+.+++..| |. .....|+++
T Consensus 524 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 524 NMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp ECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred ECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 99999 566666432 579999999987656666778887 67888887665 44 225678865
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=194.33 Aligned_cols=189 Identities=11% Similarity=0.026 Sum_probs=110.7
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|+|++|. +..+|. .++|++|++++|.+.+..+. .+++|++|++++|.+.+.++..+..+++|+
T Consensus 76 l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 147 (487)
T 3oja_A 76 LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (487)
T ss_dssp CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE
T ss_pred cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC
Confidence 3344555555555554 222221 14455555555443332221 234455555555555554443333335555
Q ss_pred EEEeecCCCCCCCCCccc-ccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 572 VYLFVDTRDHRTSSSSWH-LWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
.|++++|.+.+..+..+. .+..|..++++.|.+... +....+++| +.|+|++|.++.+|..+..+++|+.|+
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKL-----KTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTC-----CEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCC-----CEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 555555554444333332 344555555555444333 223345555 788899999999988888999999999
Q ss_pred ccccccccccCCc---ccccceEeeecCccc-ccchhhccCchhHhhhhh
Q 047161 651 LDDCKRLRSLSEL---PSDIKKVRVHGCTSL-ATISDALRSCNSATSRIF 696 (720)
Q Consensus 651 L~~c~~L~~lp~l---p~~L~~L~l~~c~~L-~~lp~~~~~~~~L~~l~~ 696 (720)
|++|. +..+|.. .++|+.|++++|+-. ..+|.++..++.|..+..
T Consensus 221 Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 221 LRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 99984 6666642 257899999998866 577888888888887655
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-19 Score=184.88 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=109.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|.+ ..+| .+++|++|++++|.+.+..+. .+++|++|++++|.+.+.++..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred hhhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 33444555555555442 2222 124455555555433322221 234455555555555544443333334555
Q ss_pred EEEeecCCCCCCCCCcc-cccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 572 VYLFVDTRDHRTSSSSW-HLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
.|++++|.+....+..+ ..+..++.++++.+..... +....+++| +.|++++|.++.+|..+..+++|+.|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L-----~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKL-----KTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTC-----CEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccC-----CEEECCCCcCCcchhhhcccCcccEEE
Confidence 55555554444433333 2344445555544443332 222335554 788889999998888888899999999
Q ss_pred ccccccccccCCcc---cccceEeeecCccc-ccchhhccCchhHhhhhhh
Q 047161 651 LDDCKRLRSLSELP---SDIKKVRVHGCTSL-ATISDALRSCNSATSRIFC 697 (720)
Q Consensus 651 L~~c~~L~~lp~lp---~~L~~L~l~~c~~L-~~lp~~~~~~~~L~~l~~~ 697 (720)
+++| .+..+|... ++|+.|++++++-. ..+|.++..++.|+.+...
T Consensus 221 L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 221 LRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 9998 466666422 57899999988866 6778888888888886554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=174.53 Aligned_cols=195 Identities=19% Similarity=0.176 Sum_probs=138.8
Q ss_pred ceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccch
Q 047161 405 LRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 405 l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
++.+++.++.++.+|..+. ..+..|++++|.+..+.. ..|..+++|++|+|++|. +..++.
T Consensus 12 l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~--- 72 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSL--------ATLMPYTRLTQLNLDRAE-------LTKLQV--- 72 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEG--------GGGTTCTTCCEEECTTSC-------CCEEEC---
T ss_pred ccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCH--------HHhhcCCCCCEEECCCCc-------cCcccC---
Confidence 5566666666667765543 455666666666543321 236777888888888876 455544
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
.+.+++|++|++++|. +..+|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.++++..+
T Consensus 73 -------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 73 -------DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp -------CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -------CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 3457788888888887 45778878888888888888876555444668888888888888888888887776
Q ss_pred CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCC
Q 047161 565 FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLP 644 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~ 644 (720)
..+++|+.|++++|.+..+++. .+..+++| +.|+|++|.++.+|..+..++
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~------------------------~~~~l~~L-----~~L~L~~N~l~~ip~~~~~~~ 195 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAG------------------------LLNGLENL-----DTLLLQENSLYTIPKGFFGSH 195 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTT------------------------TTTTCTTC-----CEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCCCEEECCCCcCCccCHH------------------------HhcCcCCC-----CEEECCCCcCCccChhhcccc
Confidence 6667888888866655443322 24455555 778889999999998888888
Q ss_pred CCceeeccccc
Q 047161 645 KFKHLKLDDCK 655 (720)
Q Consensus 645 ~L~~L~L~~c~ 655 (720)
+|+.|+|++|+
T Consensus 196 ~L~~l~L~~Np 206 (290)
T 1p9a_G 196 LLPFAFLHGNP 206 (290)
T ss_dssp CCSEEECCSCC
T ss_pred cCCeEEeCCCC
Confidence 99999999876
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-18 Score=171.18 Aligned_cols=217 Identities=16% Similarity=0.206 Sum_probs=140.0
Q ss_pred EecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhH
Q 047161 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488 (720)
Q Consensus 409 ~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l 488 (720)
+..+..+..+|..+. ..+++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-------l~~~~~~~----- 71 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGS--------YSFFSFPELQVLDLSRCE-------IQTIEDGA----- 71 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECT--------TTTTTCTTCSEEECTTCC-------CCEECTTT-----
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcccccCH--------hHhccccCCcEEECCCCc-------CCccCHHH-----
Confidence 334444555565442 356666666665544311 147778888888888886 46665532
Q ss_pred HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCC-ccccCCc
Q 047161 489 QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPS 567 (720)
Q Consensus 489 ~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~ 567 (720)
+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+.. +..+..+
T Consensus 72 ---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 72 ---YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp ---TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ---ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 777888888888888866666677888888888888888766555556888888888888888887743 4444445
Q ss_pred CCceEEEeecCCCCCCCCCccccccccc----ccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccccc-ccC
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFS----LMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGT-INH 642 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~----~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~-i~~ 642 (720)
++|+.|++++|.+..+.+..+..+..+. .++++.+.........+.. . +|+.|++++|.++.+|.. +..
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~-----~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I-----RLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C-----CEEEEECCSSCCSCCCTTTTTT
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C-----cccEEECCCCceeecCHhHhcc
Confidence 8888888888877776666665555554 3444444433222221211 1 346666666666666543 356
Q ss_pred CCCCceeeccccc
Q 047161 643 LPKFKHLKLDDCK 655 (720)
Q Consensus 643 l~~L~~L~L~~c~ 655 (720)
+++|+.|++++|+
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 6666666666664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=168.87 Aligned_cols=201 Identities=20% Similarity=0.252 Sum_probs=144.4
Q ss_pred cccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCc
Q 047161 402 SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPR 481 (720)
Q Consensus 402 ~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~ 481 (720)
....+.++.+++.++.+|..+. ..++.|+++++++..+. ...|..+++|++|+|++|. +..+|.
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~-------l~~i~~ 78 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLP--------SKAFHRLTKLRLLYLNDNK-------LQTLPA 78 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCC--------TTSSSSCTTCCEEECCSSC-------CSCCCT
T ss_pred CCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeC--------HHHhcCCCCCCEEECCCCc-------cCeeCh
Confidence 3445677788888888876553 45667777776654431 1247778888888888876 566666
Q ss_pred cchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc
Q 047161 482 EIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP 561 (720)
Q Consensus 482 ~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~ 561 (720)
.. +..+++|++|++++|.+....+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.++
T Consensus 79 ~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 79 GI--------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp TT--------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hh--------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 53 5678888888888887544444556788888888888887666555667888888888888888888877
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i 640 (720)
..+..+++|+.|++++|.+..+.+ ..+.++++| +.|++++|.++.+|. .+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L-----~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPE------------------------GAFDKLTEL-----KTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT------------------------TTTTTCTTC-----CEEECCSSCCSCCCTTTT
T ss_pred hHccCCcccceeEecCCcCcEeCh------------------------hHhccCCCc-----CEEECCCCcCCcCCHHHh
Confidence 766666888888887665544322 224555655 788889999988875 47
Q ss_pred cCCCCCceeeccccc
Q 047161 641 NHLPKFKHLKLDDCK 655 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~ 655 (720)
..+++|+.|+|++|+
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 788999999999886
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-18 Score=171.86 Aligned_cols=203 Identities=17% Similarity=0.119 Sum_probs=152.7
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|++++|. +..++... +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..
T Consensus 28 ~~l~~L~ls~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFNP-------LRHLGSYS--------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TTCCEEECTTCC-------CCEECTTT--------TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccEEECCCCc-------ccccCHhH--------hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 579999999987 57776532 788999999999999866555668899999999999999877766
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCC-CCcccccccccccccCCCCcccccCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTS-SSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
|..+.++++|++|++++|.+.+.++..+..+++|+.|++++|.+.... +..+..+..++.++++.+.........+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 688999999999999999999988866666699999999998887754 6677777777777777776655544445555
Q ss_pred CCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc----ccccceEeeecCc
Q 047161 616 CSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCT 676 (720)
Q Consensus 616 ~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~ 676 (720)
++|+.|.+ .|++++|.++.+|.......+|+.|++++|. ++.+|.- .++|+.|++++++
T Consensus 173 ~~L~~l~l-~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 173 HQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HTCTTCCE-EEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhccccce-eeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 55544432 6777888777776655555577788887774 5555431 1456777776544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=179.13 Aligned_cols=240 Identities=18% Similarity=0.179 Sum_probs=187.9
Q ss_pred eeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC
Q 047161 430 CNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL 509 (720)
Q Consensus 430 L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~ 509 (720)
.++..+.+....... +..+++|++|+|++|. +..++... ++.+++|++|+|++|.+.
T Consensus 15 ~~ls~~~l~~~~~~~--------~~~~~~L~~L~L~~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~n~l~ 71 (317)
T 3o53_A 15 EKVTDSSLKQALASL--------RQSAWNVKELDLSGNP-------LSQISAAD--------LAPFTKLELLNLSSNVLY 71 (317)
T ss_dssp ESCCTTTHHHHHHHH--------HTTGGGCSEEECTTSC-------CCCCCHHH--------HTTCTTCCEEECTTSCCE
T ss_pred eeccccchhhhHHHH--------hccCCCCCEEECcCCc-------cCcCCHHH--------hhCCCcCCEEECCCCcCC
Confidence 345555555544332 4567899999999997 55555322 889999999999999965
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccc
Q 047161 510 VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWH 589 (720)
Q Consensus 510 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 589 (720)
+..| ++.+++|++|++++|. +..+| .+++|++|++++|.+.+.++..+ ++|+.|++++|.+..+.+..+.
T Consensus 72 ~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 72 ETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp EEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEECCC---SSCEEEECCSSCCCSGGGBCTG
T ss_pred cchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcccc---CCCCEEECCCCCCCCccchhhh
Confidence 5444 8899999999999986 44444 34899999999999999877653 7899999999999999998999
Q ss_pred ccccccccccCCCCcccccCCCC-CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-c--cc
Q 047161 590 LWFPFSLMQKGSSDSMALMLPSL-SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-L--PS 665 (720)
Q Consensus 590 ~l~~l~~l~l~~~~~~~~~~~~l-~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l--p~ 665 (720)
.+..++.++++.+.........+ ..+++| +.|++++|.++.+|... .+++|+.|++++|. +..+|. + .+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 214 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTL-----EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAA 214 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----CEEECTTSCCCEEECCC-CCTTCCEEECCSSC-CCEECGGGGGGT
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcC-----CEEECCCCcCccccccc-ccccCCEEECCCCc-CCcchhhhcccC
Confidence 99999999999988776655554 356665 78999999999887544 58999999999994 556643 2 26
Q ss_pred ccceEeeecCcccccchhhccCchhHhhhhhhcccch--hHHHHHhh
Q 047161 666 DIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPK--LILNWLQQ 710 (720)
Q Consensus 666 ~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~--l~~~w~~~ 710 (720)
+|+.|++++| .+..+|..+..+++|+.+++..|--. ..+.|+..
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred cccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 7999999997 57789999999999999888876322 34555543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=183.38 Aligned_cols=242 Identities=24% Similarity=0.223 Sum_probs=136.1
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
++|+.|++++|.+.. +...+..++.|++++|.++.+|. ...++..|++++|.+..+ |. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l----------~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL----------PA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC----------CC--CCTTCCE
T ss_pred CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC----------CC--CCCCcCE
Confidence 356667777666542 22244557777777777777666 445666666666655432 22 4556677
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|++++|. +..+|.. +++|++|++++|. +..+|.. +.+|+.|++++|. +..+| .
T Consensus 126 L~L~~N~-------l~~lp~~------------l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~---~ 178 (622)
T 3g06_A 126 LWIFGNQ-------LTSLPVL------------PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLP---M 178 (622)
T ss_dssp EECCSSC-------CSCCCCC------------CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCC---C
T ss_pred EECCCCC-------CCcCCCC------------CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCC-CCCCc---c
Confidence 7776665 4455543 3566667777665 3345542 3556666666654 33355 3
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
.+++|+.|++++|.+.+++.. +++|+.|++.+|.+..++.. +.++..++++.|.+... + ..+++|
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~l--p--~~l~~L--- 243 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSL--P--VLPSEL--- 243 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCC--C--CCCTTC---
T ss_pred cCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcC--C--CCCCcC---
Confidence 456666666666666665432 25666666666666554421 24455555655544331 1 223333
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccchhhcc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
+.|+|++|.++.+|. .+++|+.|+|++| .+..+|.-- ++|+.|++++|+--+..|..+.
T Consensus 244 --~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 244 --KELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp --CEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred --cEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 566666666666665 4566666777666 344554311 4566666666665555554443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-20 Score=190.55 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=130.3
Q ss_pred chhccCCcceEEEeccccCCcccCccccceEEEecCCCCCC--CCCCC--------CCCcceEeeCCCCchhHHhhhccC
Q 047161 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKS--LPSSM--------EMDKTLECNMCYRRIEQFWKGIKN 446 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~--lp~~~--------~~~~l~~L~l~~~~i~~l~~~~~~ 446 (720)
.++.+.+|+.+++++|.+ .....++..++.+++++|.+.. +|..+ ...++++|++++|++...
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 110 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT------ 110 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC------
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch------
Confidence 344555666666666655 2222233345556665555532 33322 244555555555544321
Q ss_pred ccccCCC--CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-----CCCcEEeccCCCCCcccCCCCCCC
Q 047161 447 LIRTPDF--TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-----TGLVFLNLNDCKILVRLPSTINGW 519 (720)
Q Consensus 447 l~~~~~~--~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-----~~L~~L~Ls~n~~~~~lp~~i~~l 519 (720)
.+..+ ..+++|++|+|++|. +..+|.. ++.+ ++|++|++++|.+.+..|..++++
T Consensus 111 --~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~---------~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 111 --APPPLLEATGPDLNILNLRNVS-------WATRDAW---------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp --CCCCSSSCCSCCCSEEEEESCB-------CSSSSSH---------HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred --hHHHHHHhcCCCccEEEccCCC-------CcchhHH---------HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 01112 567777777777766 3444433 3333 677777777777555555677777
Q ss_pred CCCCEEeccCCCCCcc--cCcCc--CCCCCCCEEeccCcccccC---CccccCCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 520 KSLRTVNLSRCSKLEN--MPESL--GQMESLEELDVSGTVIRQP---VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 520 ~~L~~L~L~~~~~l~~--lp~~~--~~L~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
++|++|++++|.+.+. +|..+ +.+++|++|++++|.+.+. +...+..+++|+.|++++|.+.+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 245 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------- 245 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------
Confidence 7777777777765544 23333 6677777777777777632 22333334677777776666555332
Q ss_pred cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceE
Q 047161 593 PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKV 670 (720)
Q Consensus 593 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L 670 (720)
.+.+..+++| +.|++++|.++.+|.++. ++|++|++++| .++.+|.+. ++|+.|
T Consensus 246 ----------------~~~~~~l~~L-----~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L 301 (312)
T 1wwl_A 246 ----------------APSCDWPSQL-----NSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNL 301 (312)
T ss_dssp ----------------CSCCCCCTTC-----CEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEE
T ss_pred ----------------hhhhhhcCCC-----CEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEE
Confidence 1122233333 455556666655555544 55666666655 344444321 345555
Q ss_pred eeecC
Q 047161 671 RVHGC 675 (720)
Q Consensus 671 ~l~~c 675 (720)
+++++
T Consensus 302 ~L~~N 306 (312)
T 1wwl_A 302 SLKGN 306 (312)
T ss_dssp ECTTC
T ss_pred eccCC
Confidence 55543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=165.70 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEe
Q 047161 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 575 (720)
++|+.|++++|.+....|..++++++|++|++++|.+....+..+.++++|++|++++|.+.++++..+..+++|+.|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 34555555555533333334555555555555555433222223455555555555555555555554444455555555
Q ss_pred ecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cccCCCCCceeecccc
Q 047161 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDC 654 (720)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 654 (720)
++|.+..+.+..|..+..|+.+++..+.........+..+++| +.|++++|.++.+|. .+..+++|+.|+|++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-----KELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-----ceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 5555555555555555555555555555444433346777776 788999999998875 5789999999999999
Q ss_pred ccccccCC--cc--cccceEeeecCc
Q 047161 655 KRLRSLSE--LP--SDIKKVRVHGCT 676 (720)
Q Consensus 655 ~~L~~lp~--lp--~~L~~L~l~~c~ 676 (720)
.+..+|. +. ++|+.|++.+++
T Consensus 192 -~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 -QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCCcCCHHHhccccCCCEEEecCCC
Confidence 5666664 22 579999998876
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=166.69 Aligned_cols=178 Identities=11% Similarity=0.166 Sum_probs=103.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccC-CCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND-CKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~-n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
|..+++|++|++++|..+ +.++... +..+++|++|++++ |.+....|..+.++++|++|++++|.
T Consensus 51 ~~~l~~L~~L~l~~n~~l------~~i~~~~--------f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTL------QQLESHS--------FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TTTCTTCCEEEEECCSSC------CEECTTT--------EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred ccCCCCCcEEeCCCCCCc------ceeCHhH--------cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence 556666677777666422 4555422 55666677777766 55333223455666667777776664
Q ss_pred CCcccCcCcCCCCCCC---EEeccCc-ccccCCccccCCcCCce-EEEeecCCCCCCCCCcccccccccccccCCCCccc
Q 047161 532 KLENMPESLGQMESLE---ELDVSGT-VIRQPVPSIFFPSRILK-VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~ 606 (720)
+. .+|. ++.+++|+ +|++++| .+.++++..+..+++|+ .|++++|.+..++...
T Consensus 117 l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~------------------- 175 (239)
T 2xwt_C 117 LK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA------------------- 175 (239)
T ss_dssp CC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT-------------------
T ss_pred Cc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh-------------------
Confidence 33 3555 66666666 6666666 66666665555556666 6666555444332222
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCC-Ccccc-ccccCC-CCCceeeccccccccccCCc-ccccceEeeecCcc
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNN-FVSLR-GTINHL-PKFKHLKLDDCKRLRSLSEL-PSDIKKVRVHGCTS 677 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~-l~~lp-~~i~~l-~~L~~L~L~~c~~L~~lp~l-p~~L~~L~l~~c~~ 677 (720)
+.. + +|+.|++++|. ++.+| ..+..+ ++|+.|++++| .++.+|.- .++|+.|++.++..
T Consensus 176 -----~~~-~-----~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 -----FNG-T-----KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp -----TTT-C-----EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred -----cCC-C-----CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 222 2 34677777773 77765 446667 77777777776 35555532 35677777776654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=191.18 Aligned_cols=149 Identities=20% Similarity=0.227 Sum_probs=115.0
Q ss_pred ccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCC
Q 047161 393 QLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRL 470 (720)
Q Consensus 393 ~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l 470 (720)
.+......+|..++.|++++|.++.+|. .| ...+++.|++++|++..+..+ .|.++++|++|+|++|.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~--------~f~~L~~L~~L~Ls~N~-- 111 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGNP-- 111 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------TTTTCTTCCEEECTTCC--
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh--------HhcCCCCCCEEEccCCc--
Confidence 3333334567778999999999998875 44 467889999998887654322 38889999999999987
Q ss_pred CCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc-ccCcCcCCCCCCCEE
Q 047161 471 QNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEEL 549 (720)
Q Consensus 471 ~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L 549 (720)
|+.+|... |+.+++|++|+|++|.+.+..|..|+++++|++|++++|.+.. ..|..++.+++|++|
T Consensus 112 -----l~~l~~~~--------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 112 -----IQSLALGA--------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp -----CCEECGGG--------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred -----CCCCCHHH--------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 67787654 7889999999999998655444568899999999999987654 467788889999999
Q ss_pred eccCcccccCCcccc
Q 047161 550 DVSGTVIRQPVPSIF 564 (720)
Q Consensus 550 ~L~~n~l~~~~~~~~ 564 (720)
++++|.+.+.++..+
T Consensus 179 ~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDL 193 (635)
T ss_dssp ECCSSCCCEECGGGG
T ss_pred cccCccccccccccc
Confidence 999998888766544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-20 Score=189.53 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=108.6
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCC-----CCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC---Cccc-
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGW-----KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP---VPSI- 563 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~---~~~~- 563 (720)
+.+++|++|+|++|.+.+. |..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.+. ++..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4555666666666553333 5545444 5566666666554444445555566666666666554432 2222
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc--cccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTIN 641 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~ 641 (720)
+..+++|+.|++++|.+..+. ......+.++++| +.|++++|.++..+ ..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQL-----QGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCC-----SEEECTTSCCCSSCCCSCCC
T ss_pred hccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCC-----CEEECCCCcCCcccchhhhh
Confidence 122355555555444332110 0000012345555 78999999998755 4566
Q ss_pred CCCCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
.+++|++|++++|. ++.+|. ++++|++|+++++ .++.+|. +..+++|+.+++.+|
T Consensus 251 ~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 251 WPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred hcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 78999999999994 667764 4578999999997 4777777 889999999887765
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=165.15 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=138.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
++.+++++.++++++. ++.+|.. + .++|+.|+|++|.+.+..|..+.++++|++|++++|.+
T Consensus 6 ~~~l~~l~~l~~~~~~-------l~~ip~~---------~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-------LTALPPD---------L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp EECSTTCCEEECTTSC-------CSSCCSC---------C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred ccccCCccEEECCCCC-------CCcCCCC---------C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence 4566677777777765 5666665 2 25677777777776555566677777777777777754
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
. .+|.. +.+++|++|++++|.+..+|...... ++|+.|++++|.+..+++..|..+..|+.+.+..+.+.......+
T Consensus 68 ~-~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 68 T-KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp C-EEECC-SCCTTCCEEECCSSCCSSCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred C-cccCC-CCCCcCCEEECCCCcCCcCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 3 34433 67777777777777777666544433 777777777777777777777777777777777766655444446
Q ss_pred CCCCCCCcccccEEECCCCCCcccccc-ccCCCCCceeeccccccccccCCcc---cccceEeeecCc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGT-INHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCT 676 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~ 676 (720)
..+++| +.|+|++|.++.+|.. +..+++|+.|+|++|+ ++.+|.-. ++|+.|++.+++
T Consensus 145 ~~l~~L-----~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKL-----EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTC-----CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCC-----CEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 677766 7888999999998854 5789999999999984 66666421 468888888655
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=165.79 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=95.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.++..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 45556666666666654433333455566666666666554443334455566666666666666655555544445666
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+.+..+..+..++.+++..+.........+..+++| +.|++++|.+. +.+++|+.|++
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----~~L~l~~N~~~------~~~~~l~~l~~ 229 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-----QYIWLHDNPWD------CTCPGIRYLSE 229 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-----CEEECCSSCBC------CCTTTTHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC-----CEEEccCCCcc------ccCcHHHHHHH
Confidence 66666666555555555555666666666555554433346677766 77888888654 45678888888
Q ss_pred cccccccccCC
Q 047161 652 DDCKRLRSLSE 662 (720)
Q Consensus 652 ~~c~~L~~lp~ 662 (720)
..|..-..+|.
T Consensus 230 ~~n~~~g~ip~ 240 (272)
T 3rfs_A 230 WINKHSGVVRN 240 (272)
T ss_dssp HHHHTGGGBBC
T ss_pred HHHhCCCcccC
Confidence 88865555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=184.52 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=180.5
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
..+++|++|+|++|. +..+++.. ++.+++|++|+|++|.+.+..| ++.+++|++|+|++|. +
T Consensus 31 ~~~~~L~~L~Ls~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l 92 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-------LSQISAAD--------LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-V 92 (487)
T ss_dssp TTGGGCCEEECCSSC-------CCCCCGGG--------GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-E
T ss_pred ccCCCccEEEeeCCc-------CCCCCHHH--------HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-C
Confidence 356699999999997 56665432 8899999999999999665555 8999999999999985 4
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
+.+|. .++|++|++++|.+.+.++..+ ++|+.|++++|.+.+..+..+..+..|..++++.|...+..+..+.
T Consensus 93 ~~l~~----~~~L~~L~L~~N~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 93 QELLV----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EEEEE----CTTCCEEECCSSCCCCEEECCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCCCC----CCCcCEEECcCCcCCCCCcccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 44553 3899999999999999887643 7899999999999999999999999999999999988776666654
Q ss_pred -CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchhhccCch
Q 047161 614 -GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDALRSCN 689 (720)
Q Consensus 614 -~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~~~~~~ 689 (720)
.+++| +.|+|++|.++.+|.. ..+++|+.|+|++|. +..+|. +. ++|+.|++++|. +..+|..+..++
T Consensus 166 ~~l~~L-----~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~ 237 (487)
T 3oja_A 166 ASSDTL-----EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQ 237 (487)
T ss_dssp GGTTTC-----CEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCT
T ss_pred hhCCcc-----cEEecCCCcccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCC
Confidence 67766 7889999999988754 469999999999995 555543 22 679999999965 778999999999
Q ss_pred hHhhhhhhcccch--hHHHHHh
Q 047161 690 SATSRIFCINCPK--LILNWLQ 709 (720)
Q Consensus 690 ~L~~l~~~~nc~~--l~~~w~~ 709 (720)
+|+.+++..|.-. ..+.|+.
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCEEEcCCCCCcCcchHHHHH
Confidence 9999888766222 3445554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=161.95 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=139.3
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccC-CCCCc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSR-CSKLE 534 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~-~~~l~ 534 (720)
++|++|++++|. ++.+|... ++.+++|++|++++|..++.+| ..++++++|++|++++ |.+..
T Consensus 31 ~~l~~L~l~~n~-------l~~i~~~~--------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETH-------LRTIPSHA--------FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TTCCEEEEESCC-------CSEECTTT--------TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred CcccEEEEeCCc-------ceEECHHH--------ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 378899998887 57777643 7788999999999986344454 4778899999999988 65444
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce---EEEeecC-CCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK---VYLFVDT-RDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
..|..|..+++|++|++++|.+.++|. +..+++|+ .|++++| .+..++ ..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~------------------------~~ 149 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIP------------------------VN 149 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC------------------------TT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcC------------------------cc
Confidence 334568889999999999998888665 33346776 8888666 443322 22
Q ss_pred CCCCCCCCCccccc-EEECCCCCCccccccccCCCCCceeeccccccccccCC-----cccccceEeeecCcccccchhh
Q 047161 611 SLSGLCSLTELNLK-KLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-----LPSDIKKVRVHGCTSLATISDA 684 (720)
Q Consensus 611 ~l~~l~~L~~L~L~-~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----lp~~L~~L~l~~c~~L~~lp~~ 684 (720)
.+.++++| + .|++++|.++.+|......++|+.|++++|+.++.+|. +.++|+.|+++++ .++.+|..
T Consensus 150 ~~~~l~~L-----~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 150 AFQGLCNE-----TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TTTTTBSS-----EEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred cccchhcc-----eeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence 35566665 7 89999999999987654458999999999977877763 2157999999985 47788864
Q ss_pred ccCchhHhhhhh
Q 047161 685 LRSCNSATSRIF 696 (720)
Q Consensus 685 ~~~~~~L~~l~~ 696 (720)
.+++|+.|.+
T Consensus 224 --~~~~L~~L~l 233 (239)
T 2xwt_C 224 --GLEHLKELIA 233 (239)
T ss_dssp --TCTTCSEEEC
T ss_pred --HhccCceeec
Confidence 4556666443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=158.29 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=116.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
+.++++++++. +..+|.. +. ++|+.|+|++|.+.+..|..++++++|++|+|++|.+.+..|
T Consensus 15 ~~~~l~~~~~~-------l~~~p~~---------~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 15 GKKEVDCQGKS-------LDSVPSG---------IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GGTEEECTTCC-------CSSCCSC---------CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCeEEecCCCC-------ccccCCC---------CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 45566666654 4566654 22 466777777776555555566677777777777766555555
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+++..|..+..|+.+++..+.+.......+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 55666777777777777777666666555567777777766666666666666666666666666555444434666666
Q ss_pred CCcccccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 618 LTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
| +.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 157 L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 L-----QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp C-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred C-----CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5 678888888887764 67788888888888886
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=165.82 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=62.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|. +..+| .++.+++|++|++++|.+. .+|. +..+++|++|++++|.+.+.++ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 3344555555555554 22232 3444555555555554322 2332 4455555555555555544433 22224555
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+.+ +..+..|+.+++..+...... .+..+++| +.|++++|.++.+| .+..+++|+.|++
T Consensus 155 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L-----~~L~L~~N~l~~~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--PLASLPNL-----IEVHLKNNQISDVS-PLANTSNLFIVTL 224 (308)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTC-----CEEECTTSCCCBCG-GGTTCTTCCEEEE
T ss_pred EEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh--hhcCCCCC-----CEEEccCCccCccc-cccCCCCCCEEEc
Confidence 55555444444332 344444444444443332211 12333332 34444444444444 2444444444444
Q ss_pred ccc
Q 047161 652 DDC 654 (720)
Q Consensus 652 ~~c 654 (720)
++|
T Consensus 225 ~~N 227 (308)
T 1h6u_A 225 TNQ 227 (308)
T ss_dssp EEE
T ss_pred cCC
Confidence 444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=168.50 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=140.3
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++.+++.++++|..+ ..++++|++++|+++.+..+ .|.++++|++|+|++|..+ +.+|...
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~--------~f~~l~~L~~L~Ls~N~i~------~~i~~~~-- 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKG--------AFSGFGDLEKIEISQNDVL------EVIEADV-- 74 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTT--------SSTTCTTCCEEEEECCTTC------CEECTTS--
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHH--------HHcCCCCCCEEECcCCCCC------CccChhH--
Confidence 34556666777777655 24556666666665543221 2677777777777777622 3455433
Q ss_pred hhHHHHhccCCCCcE-EeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccC-cccccCCccc
Q 047161 486 ESLQKLIELLTGLVF-LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG-TVIRQPVPSI 563 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~-L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~-n~l~~~~~~~ 563 (720)
|.++++|+. +.+++|.+....|..+.++++|++|++++|.+....+..+....++..|++.+ +.+..+++..
T Consensus 75 ------f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 75 ------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp ------BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred ------hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc
Confidence 556666654 44445554444455667777777777777754443334455556666777754 3555555544
Q ss_pred cCC-cCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 564 FFP-SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 564 ~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
+.. ...++.|++++|.+..+.+..|.. ..+..+.+..++......+ .|.++++| +.|+|++|+++.+|..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L-----~~LdLs~N~l~~lp~~-- 220 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGP-----VILDISRTRIHSLPSY-- 220 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECC-----SEEECTTSCCCCCCSS--
T ss_pred hhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCccc-----chhhcCCCCcCccChh--
Confidence 333 235677777777777666665543 3455555554333333222 35666655 6677777777777753
Q ss_pred CCCCCceeeccccccccccCCcc--cccceEeeec
Q 047161 642 HLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHG 674 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~ 674 (720)
.+.+|+.|.+.+|.+++.+|.+. ++|+.+++.+
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 35666777777777777777654 4566666643
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=160.53 Aligned_cols=192 Identities=14% Similarity=0.183 Sum_probs=94.9
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.|++.++.+..+|......+++.|++++|.+..+ +.+..+++|++|++++|. +..++ .
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~----------~~~~~l~~L~~L~L~~n~-------l~~~~-~- 102 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL----------APLKNLTKITELELSGNP-------LKNVS-A- 102 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC----------GGGTTCCSCCEEECCSCC-------CSCCG-G-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC----------hhHccCCCCCEEEccCCc-------CCCch-h-
Confidence 3555555555555555333345555555555544322 124555555555555554 23332 1
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|++++|.+ ..+|. ++.+++|++|++++|.+. .+|. ++.+++|++|++++|.+.+.++
T Consensus 103 --------~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 103 --------IAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp --------GTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred --------hcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh--
Confidence 45555555555555553 23332 555555555555555432 2332 5555555555555555555444
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR 637 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp 637 (720)
+..+++|+.|++++|.+..+.+ +..+..++.+++..+...... .+..+++| +.|++++|.++..|
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L-----~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL-----FIVTLTNQTITNQP 233 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC-----CEEEEEEEEEECCC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC-----CEEEccCCeeecCC
Confidence 2223555555555555554433 445555555555555443322 24444444 44445555554444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=150.87 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=109.3
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
..+.++.+++.+..+|..+. ..+..|+++++.+..+.. ..|..+++|++|+|++|. +..++...
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQ-------LQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSC-------CCCCCTTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCc-------CCccCHhH
Confidence 45678888888889887654 456666666666544321 235666667777776665 34444332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|++++|.+.++++..
T Consensus 79 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 79 --------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp --------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred --------hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 556666777777766654444445566667777777666544333334566666777777777666666655
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVS 635 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~ 635 (720)
+..+++|+.|++++|.+..+. ...+..+++| +.|+|++|.+..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L-----~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVP------------------------HGAFDRLGKL-----QTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCC------------------------TTTTTTCTTC-----CEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccC------------------------HHHHhCCCCC-----CEEEeeCCceeC
Confidence 544466666666555444332 2235556655 677888887753
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=162.33 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=172.2
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEE-eccCCCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTV-NLSRCSKL 533 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L-~L~~~~~l 533 (720)
.+++++|+|++|. |+.+|... |..+++|++|+|++|.+.+.+|. .|.++++|+++ .+++|.+.
T Consensus 29 ~~~l~~L~Ls~N~-------i~~i~~~~--------f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 29 PRNAIELRFVLTK-------LRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CTTCSEEEEESCC-------CSEECTTS--------STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCEEEccCCc-------CCCcCHHH--------HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 3689999999998 78898754 78899999999999997787775 56889998864 55556555
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeec-CCCCCCCCCcccccc-cccccccCCCCcccccCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD-TRDHRTSSSSWHLWF-PFSLMQKGSSDSMALMLPS 611 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~ 611 (720)
...|..|..+++|++|++++|.+...++..+.....+..|++.+ +.+..+....|..+. .+..+.+..+.+.......
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 55567899999999999999999998887665557788888865 456667777777765 4677888877765433333
Q ss_pred CCCCCCCCcccccEEECC-CCCCccccc-cccCCCCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCc
Q 047161 612 LSGLCSLTELNLKKLNLR-RNNFVSLRG-TINHLPKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSC 688 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls-~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~ 688 (720)
+. .. +|..++++ +|.++.+|. .+..+++|+.|+|++| .++.+|. ...+|+.|.+.+|..++.+|. +.++
T Consensus 174 f~-~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l 245 (350)
T 4ay9_X 174 FN-GT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKL 245 (350)
T ss_dssp ST-TE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTC
T ss_pred cc-cc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-chhC
Confidence 32 22 45788887 478889985 5689999999999999 5788875 347899999999999999995 6778
Q ss_pred hhHhhhhhhcc
Q 047161 689 NSATSRIFCIN 699 (720)
Q Consensus 689 ~~L~~l~~~~n 699 (720)
++|+.+.+.++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 88877666543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=162.31 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred ccCCCCcEEeccCCCCCcccC----CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc---CCccc-c
Q 047161 493 ELLTGLVFLNLNDCKILVRLP----STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ---PVPSI-F 564 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp----~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~---~~~~~-~ 564 (720)
+.+++|++|+|++|.+.+..| ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+ .++.. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 344445555555444333222 122334445555555444433333444444555555555544332 11111 1
Q ss_pred CCcCCceEEEeecCCCCCCCCC---cccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 565 FPSRILKVYLFVDTRDHRTSSS---SWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
..+++|+.|++++|.+..+... .+..+..|+.++++.|......++.+..+..+. +|+.|+|++|.++.+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~--~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS--ALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT--TCCCEECCSSCCCSCCSCCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC--cCCEEECCCCCCCchhhhhc
Confidence 1224444444444444322111 122333444444444443333223333332111 12455566666666655443
Q ss_pred CCCCCceeeccccccccccCCcc--cccceEeeecC
Q 047161 642 HLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGC 675 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c 675 (720)
++|+.|+|++|+ +..+|.+. ++|+.|+++++
T Consensus 272 --~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 --AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp --SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred --CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 566666666653 33333211 34555555554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-17 Score=169.16 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccccEEECCCCC-Ccc-ccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhh
Q 047161 611 SLSGLCSLTELNLKKLNLRRNN-FVS-LRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDA 684 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~-l~~-lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~ 684 (720)
.+..+++| +.|++++|. +.. ....+.++++|+.|++++|-.-..+..+...++.|+++++.--+..|..
T Consensus 242 ~l~~l~~L-----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 242 EFFQLNYL-----QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGCTTC-----CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHhCCCCC-----CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 34445544 566666664 210 0114566777777777776111122223344666666544433334433
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-16 Score=161.85 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=156.9
Q ss_pred cCCCCcEEeccCCCCCcccCCCC--CCCCCCCEEeccCCCCCcccC----cCcCCCCCCCEEeccCcccccCCccccCCc
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTI--NGWKSLRTVNLSRCSKLENMP----ESLGQMESLEELDVSGTVIRQPVPSIFFPS 567 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i--~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~ 567 (720)
.+++|++|++++|.+.+..|..+ +++++|++|++++|.+.+..| ..+..+++|++|++++|.+.+.++..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35779999999999888999888 899999999999998776555 345679999999999999999998887777
Q ss_pred CCceEEEeecCCCCC---CC-CCcccccccccccccCCCCcccccC--CC-CCCCCCCCcccccEEECCCCCCccc-ccc
Q 047161 568 RILKVYLFVDTRDHR---TS-SSSWHLWFPFSLMQKGSSDSMALML--PS-LSGLCSLTELNLKKLNLRRNNFVSL-RGT 639 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~---~~-~~~~~~l~~l~~l~l~~~~~~~~~~--~~-l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~ 639 (720)
++|+.|++++|.+.+ +. ...+..+..|+.+.++.+....... .. +..+++| ++|+|++|.++.+ |..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L-----~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP-----HSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC-----SSEECTTSCCCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC-----CEEECCCCCCCccchhh
Confidence 999999999998754 22 2334677889999998887642211 11 3455655 7889999999976 777
Q ss_pred ccCC---CCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 640 INHL---PKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l---~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
+..+ ++|++|+|++| .++.+|. ++++|+.|++++|. +..+|. +..+++|+.|.+.+|
T Consensus 244 ~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSST
T ss_pred HHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCC
Confidence 7666 79999999999 4667774 66899999999875 666665 577888888777765
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-17 Score=182.64 Aligned_cols=303 Identities=15% Similarity=0.156 Sum_probs=169.1
Q ss_pred chhccCCcceEEEeccccCC----cccC-cc---ccceEEEecCCCCCC-----CCCCC-CCCcceEeeCCCCchhHHhh
Q 047161 377 AFLKMTNLRLLKIHNLQLPA----GLES-LS---DELRLLQWHGYPLKS-----LPSSM-EMDKTLECNMCYRRIEQFWK 442 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~----~~~~-l~---~~l~~L~~~~~~~~~-----lp~~~-~~~~l~~L~l~~~~i~~l~~ 442 (720)
.+..+++|+.|++++|.+.. .+.. +. ..++.|++++|.+.. +|..+ ...++++|++++|.+.....
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 35566778888888776632 1111 11 157788888887662 34333 34577788888877654211
Q ss_pred hccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCC-----
Q 047161 443 GIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTIN----- 517 (720)
Q Consensus 443 ~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~----- 517 (720)
.. +.. .-+...++|++|++++|. +... ....++..+..+++|++|++++|.+....+..+.
T Consensus 131 ~~--l~~-~l~~~~~~L~~L~L~~n~-------l~~~----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 131 QL--LCE-GLLDPQCRLEKLQLEYCS-------LSAA----SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196 (461)
T ss_dssp HH--HHH-HHTSTTCCCCEEECTTSC-------CBGG----GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred HH--HHH-HHhcCCCcceEEECCCCC-------CCHH----HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence 10 000 002234578888888775 2221 1123344466677777777777774433222222
Q ss_pred CCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccccCC-----ccccCCcCCceEEEeecCCCCCC----C
Q 047161 518 GWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIRQPV-----PSIFFPSRILKVYLFVDTRDHRT----S 584 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~ 584 (720)
.+++|++|++++|.+... +|..+..+++|++|++++|.+.... +.....+++|+.|++++|.+... .
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 245777777777755442 4556667777777777777665431 22222346777777777765543 1
Q ss_pred CCcccccccccccccCCCCcccccCCCCC-----CCCCCCcccccEEECCCCCCcc-----ccccccCCCCCceeecccc
Q 047161 585 SSSWHLWFPFSLMQKGSSDSMALMLPSLS-----GLCSLTELNLKKLNLRRNNFVS-----LRGTINHLPKFKHLKLDDC 654 (720)
Q Consensus 585 ~~~~~~l~~l~~l~l~~~~~~~~~~~~l~-----~l~~L~~L~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c 654 (720)
+..+..+..++.++++.+...+.....+. ..++| +.|++++|.++. +|.++..+++|++|++++|
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-----~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-----CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-----eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 23344466677777776654332211111 11233 566677776653 3555666677777777777
Q ss_pred ccccccC---------CcccccceEeeecCcccc----cchhhccCchhHhhhhhhcc
Q 047161 655 KRLRSLS---------ELPSDIKKVRVHGCTSLA----TISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 655 ~~L~~lp---------~lp~~L~~L~l~~c~~L~----~lp~~~~~~~~L~~l~~~~n 699 (720)
. +...+ ...++|++|++++|.--. .+|..+..+++|+.+++.+|
T Consensus 352 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 352 R-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred c-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 3 22211 112367777777764222 56666666677777666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=151.71 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=129.4
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
..+..+++|+.|++++|. +..++. +..+++|++|++++|.+. .+|. ++++++|++|++++|
T Consensus 40 ~~~~~l~~L~~L~l~~~~-------i~~~~~----------~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred cchhhcCcccEEEccCCC-------cccChh----------HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCC
Confidence 335567788999998886 455543 777889999999998854 4554 888999999999988
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
.+ ..+|. ++.+++|++|++++|.+.+. +.+.. +++|+.|++++|.+..+ ..+..+..|+.++++.+.......
T Consensus 101 ~l-~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KV-KDLSS-LKDLKKLKSLSLEHNGISDI-NGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CC-CCGGG-GTTCTTCCEEECTTSCCCCC-GGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cC-CCChh-hccCCCCCEEECCCCcCCCC-hhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 64 44544 88889999999999988876 33433 48899999988887776 466777778888777776554332
Q ss_pred CCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 611 SLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+..+++| +.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 174 -l~~l~~L-----~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 -LAGLTKL-----QNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTC-----CEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -hcCCCcc-----CEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 6666665 778888888888874 7888889999998885
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=138.67 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=131.8
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
+.++.+++. +..+|... .++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..
T Consensus 10 ~~v~c~~~~-------l~~~p~~~-----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 10 TTVECYSQG-------RTSVPTGI-----------PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp TEEECCSSC-------CSSCCSCC-----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CEEEecCCC-------ccCCCCCC-----------CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 556666654 56777652 468999999999866554556789999999999998765444455
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 619 (720)
+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+.. +..+++|
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L- 126 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV------------------------FDKLTQL- 126 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTC-
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhH------------------------hccCCcC-
Confidence 789999999999999999988887766699999999777655433322 4455555
Q ss_pred cccccEEECCCCCCcccccc-ccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchh
Q 047161 620 ELNLKKLNLRRNNFVSLRGT-INHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNS 690 (720)
Q Consensus 620 ~L~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~ 690 (720)
+.|++++|.++.+|.. +..+++|+.|++++|+.. .-.++|+.|++..+..-+.+|+++..++.
T Consensus 127 ----~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 ----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CEEECCCCccceeCHHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6778888888877754 677888888888888632 22345777777777766777777666554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=158.06 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|+|++|. +..+| . .+++|++|++++|.+. .+|. +++ +|++|++++|.+.+ +
T Consensus 80 ~~L~~L~Ls~N~-------l~~ip-~-----------~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N~l~~-l 135 (571)
T 3cvr_A 80 PQITVLEITQNA-------LISLP-E-----------LPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNNQLTM-L 135 (571)
T ss_dssp TTCSEEECCSSC-------CSCCC-C-----------CCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSSCCSC-C
T ss_pred CCCCEEECcCCC-------Ccccc-c-----------ccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCCcCCC-C
Confidence 566666666655 34444 2 1456666666666533 3555 443 66666666654333 5
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
|. .+++|++|++++|.++++|. .+++|+.|++++|.+..++. +. .+|+.++++.|.+.. +|.+..
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~--lp~~~~-- 200 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES--LPAVPV-- 200 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS--CCCCC---
T ss_pred CC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc--hhhHHH--
Confidence 54 45666666666666666444 22566666666666555444 32 455555555554431 111211
Q ss_pred CCC--cccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 617 SLT--ELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~--~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+|. .-.|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 110 001155566666666666555556666666666654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=136.03 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=121.6
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..-.++|++|++++|. +..++... ++.+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 24 ~~~~~~l~~L~l~~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNS-------LKSLPNGV--------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp SCCCTTCSEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCcEEEcCCCc-------cCcCChhh--------hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3457899999999997 56676653 67899999999999986544445578999999999999976
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
.+..+..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+.. +
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------------------~ 144 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV------------------------F 144 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT------------------------T
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH------------------------h
Confidence 6544456899999999999999999999887776799999999877665543322 3
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
..+++| +.|++++|.+. ..+++|+.|+++.|..-..+|.
T Consensus 145 ~~l~~L-----~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 145 DRLTSL-----QYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTCTTC-----CEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ccCCCc-----cEEEecCCCee------cCCCCHHHHHHHHHhCCceeec
Confidence 445554 66777777543 3556778888877764445543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=156.28 Aligned_cols=186 Identities=17% Similarity=0.166 Sum_probs=135.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.|++++|.+..+|..+. .++..|++++|++..+ | ..+++|++|+|++|. +..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~i----------p--~~l~~L~~L~Ls~N~-------l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISL----------P--ELPASLEYLDACDNR-------LSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCC----------C--CCCTTCCEEECCSSC-------CSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCccc----------c--cccCCCCEEEccCCC-------CCCcch-h
Confidence 35566666666666776553 6788889888877543 3 457899999999987 456665 2
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
.. +|++|+|++|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++++|.+.++|.
T Consensus 119 ---------~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 119 ---------PA--SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp ---------CT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred ---------hc--CCCEEECCCCcCC-CCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch--
Confidence 11 8999999999854 4787 6899999999998654 4776 57889999999999999776
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccc-------cccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-c
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPF-------SLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-S 635 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l-------~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~ 635 (720)
+. ++|+.|++++|.+..++. +.. .+ ..+++..|.+.. .+..+..+++| +.|+|++|.++ .
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L-----~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPT-----CTIILEDNPLSSR 245 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTT-----EEEECCSSSCCHH
T ss_pred hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCC-----CEEEeeCCcCCCc
Confidence 32 889999999999887766 433 55 788888876653 22235556665 78899999987 4
Q ss_pred ccccccCC
Q 047161 636 LRGTINHL 643 (720)
Q Consensus 636 lp~~i~~l 643 (720)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 56666443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-17 Score=178.31 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=147.0
Q ss_pred hhccCCcceEEEeccccCC--------cccCccccceEEEecCCCCCCC-----CCCCC--CCcceEeeCCCCchhHHhh
Q 047161 378 FLKMTNLRLLKIHNLQLPA--------GLESLSDELRLLQWHGYPLKSL-----PSSME--MDKTLECNMCYRRIEQFWK 442 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~~l~~--------~~~~l~~~l~~L~~~~~~~~~l-----p~~~~--~~~l~~L~l~~~~i~~l~~ 442 (720)
|..+++|+.|++++|.+.. .+..+ ..++.|++++|.+... ...+. ..++++|++++|.+.....
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5566777777777776542 11121 3467777777665431 11111 1146666666666542110
Q ss_pred hccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHH-hccCCCCcEEeccCCCCCc----ccCCCCC
Q 047161 443 GIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL-IELLTGLVFLNLNDCKILV----RLPSTIN 517 (720)
Q Consensus 443 ~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~-i~~l~~L~~L~Ls~n~~~~----~lp~~i~ 517 (720)
.. -...+..+++|++|++++|. +.... ...+... ....++|++|++++|.+.. .++..+.
T Consensus 103 ~~----l~~~l~~~~~L~~L~Ls~n~-------i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 103 GV----LSSTLRTLPTLQELHLSDNL-------LGDAG----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp HH----HHHHTTSCTTCCEEECCSSB-------CHHHH----HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred HH----HHHHHccCCceeEEECCCCc-------CchHH----HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 00 01125566677777777665 12110 0011111 2224567777777776443 2344555
Q ss_pred CCCCCCEEeccCCCCCcccCcCcC-----CCCCCCEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCC----
Q 047161 518 GWKSLRTVNLSRCSKLENMPESLG-----QMESLEELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTS---- 584 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~lp~~~~-----~L~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---- 584 (720)
.+++|++|++++|.+....+..+. .+++|++|++++|.+.... +..+..+++|+.|++++|.+....
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 667777777777654332222222 2456777777777666531 222223367777777666544321
Q ss_pred -CCcccccccccccccCCCCccccc----CCCCCCCCCCCcccccEEECCCCCCccc-----cccc-cCCCCCceeeccc
Q 047161 585 -SSSWHLWFPFSLMQKGSSDSMALM----LPSLSGLCSLTELNLKKLNLRRNNFVSL-----RGTI-NHLPKFKHLKLDD 653 (720)
Q Consensus 585 -~~~~~~l~~l~~l~l~~~~~~~~~----~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-----p~~i-~~l~~L~~L~L~~ 653 (720)
+..+..+..++.+++..+...... ...+..+++| +.|++++|.+... +..+ ...++|++|++++
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-----KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-----CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-----ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 112223455666666655443321 1113334444 5666677766522 2122 1235777777777
Q ss_pred ccccccc-----CCc---ccccceEeeecCcccccc-hh----hccC-chhHhhhhhhcc
Q 047161 654 CKRLRSL-----SEL---PSDIKKVRVHGCTSLATI-SD----ALRS-CNSATSRIFCIN 699 (720)
Q Consensus 654 c~~L~~l-----p~l---p~~L~~L~l~~c~~L~~l-p~----~~~~-~~~L~~l~~~~n 699 (720)
|. +... +.. .++|+.|++++|. +... +. .+.. +++|+.|++.+|
T Consensus 323 n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 323 CS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp SC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC
Confidence 74 2221 111 1457777777763 3322 22 2221 456677666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=159.61 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=116.6
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+.|++++|. +..++. ++.+++|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+
T Consensus 39 ~~~L~~L~~L~l~~n~-------i~~l~~----------l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------CCCCTT----------GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC
T ss_pred hhcCCCCCEEECcCCC-------CCCChH----------HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC
Confidence 4556677777777766 445542 6667777777777777433 443 67777777777777754
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
. .+| .+..|++|++|+|++|.+.+++ .+.. +++|+.|++++|.+..+ ..+..+..|+.|+++.+.+..... +
T Consensus 100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 K-DLS-SLKDLKKLKSLSLEHNGISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp C-CCT-TSTTCTTCCEEECTTSCCCCCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred C-CCh-hhccCCCCCEEEecCCCCCCCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 3 344 5777777777777777777653 3333 37777777777777665 456667777777777665544322 6
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
..+++| +.|+|++|.+..+| .+..+++|+.|+|++|+
T Consensus 172 ~~l~~L-----~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 172 AGLTKL-----QNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTC-----CEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred ccCCCC-----CEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 666665 77888888888876 57888889999998885
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-16 Score=169.61 Aligned_cols=239 Identities=16% Similarity=0.148 Sum_probs=133.2
Q ss_pred CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc--hhhhHHHHhccCCCCcEE
Q 047161 424 MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI--ATESLQKLIELLTGLVFL 501 (720)
Q Consensus 424 ~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~--~~~~l~~~i~~l~~L~~L 501 (720)
..+++.|+++++.+....... -...+..+++|++|+|++|. +..+...+ ....+...+..+++|++|
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~L~~L~Ls~~~-------~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARW----LSENIASKKDLEIAEFSDIF-------TGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHH----HHHTTTTCTTCCEEECCSCC-------TTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred CCCccEEECCCCCCCHHHHHH----HHHHHHhCCCccEEeCcccc-------cCccccchhHHHHHHHHHHhhCCcccEE
Confidence 456778888887765432110 00125677888888888875 12222111 112333446778888888
Q ss_pred eccCCCCCc----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCC---------CCCCEEeccCcccc-cCCc--
Q 047161 502 NLNDCKILV----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQM---------ESLEELDVSGTVIR-QPVP-- 561 (720)
Q Consensus 502 ~Ls~n~~~~----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L---------~~L~~L~L~~n~l~-~~~~-- 561 (720)
+|++|.+.. .+|..+.++++|++|+|++|.+... ++..+..+ ++|++|++++|.+. +..+
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 888888655 4677777888888888888866432 22233333 78888888888876 2222
Q ss_pred -cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCC-----c
Q 047161 562 -SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNF-----V 634 (720)
Q Consensus 562 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l-----~ 634 (720)
..+..+++|+.|++++|.+..... ....+ .+..+++| +.|+|++|.+ .
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~--------------------~~l~~~~l~~~~~L-----~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGI--------------------EHLLLEGLAYCQEL-----KVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHH--------------------HHHHHTTGGGCTTC-----CEEECCSSCCHHHHHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHH--------------------HHHHHHHhhcCCCc-----cEEECcCCCCCcHHHH
Confidence 122234788888887765441000 00011 23334443 4556666665 3
Q ss_pred cccccccCCCCCceeecccccccccc-----CC-c----ccccceEeeecCcccc----cchhhc-cCchhHhhhhhhcc
Q 047161 635 SLRGTINHLPKFKHLKLDDCKRLRSL-----SE-L----PSDIKKVRVHGCTSLA----TISDAL-RSCNSATSRIFCIN 699 (720)
Q Consensus 635 ~lp~~i~~l~~L~~L~L~~c~~L~~l-----p~-l----p~~L~~L~l~~c~~L~----~lp~~~-~~~~~L~~l~~~~n 699 (720)
.+|..+..+++|++|+|++|. +... +. + .++|+.|++++|.--. .+|..+ .++++|+.|++.+|
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 455556666666666666664 2221 11 1 2446666666654322 255554 34566666555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=138.04 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=116.6
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
..+++|+.|++++|. +..+| . +..+++|++|++++|. +..+ ..++.+++|++|++++|.+.
T Consensus 41 ~~l~~L~~L~l~~n~-------i~~l~-~---------l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-------VTDLT-G---------IEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSC-------CSCCT-T---------GGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCC-------ccChH-H---------HhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccC
Confidence 467789999999887 56666 3 7888999999999996 4444 47888999999999999877
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCC-CCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTR-DHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
+..|..++.+++|++|++++|.+.+..+..+..+++|+.|++++|. ... ++.+
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--------------------------~~~l 155 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--------------------------IMPL 155 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--------------------------CGGG
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--------------------------cHhh
Confidence 7788889999999999999999887555555555888888886664 222 1234
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
..+++| +.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 156 ~~l~~L-----~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 KTLPEL-----KSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSC-----CEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCCCC-----CEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 455555 77888888888877 77888889999988885
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=145.09 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=138.8
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|. +..+| .++.+++|++|++++|.+.+ +|. +.++++|++|++++|.+.+.+. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence 5668899999999998 55665 48899999999999997554 555 9999999999999999988654 44459999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+ ..+..+..|+.++++.+..... +.+..+++| +.|++++|.++.++. +..+++|+.|++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-----~~L~L~~N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-----DTLSLEDNQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-----SEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-----CEEEccCCccccchh-hcCCCccCEEEC
Confidence 999999998886 4677888999999988876554 456677766 788999999998876 899999999999
Q ss_pred cccccccccCCcc--cccceEeeecCc
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCT 676 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~ 676 (720)
++| .++.+|.+. ++|+.|++++|+
T Consensus 186 ~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCC-cCCCChhhccCCCCCEEECcCCc
Confidence 999 466666544 579999999875
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-14 Score=136.62 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=108.8
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.++.+|..+. ..+..|++.+|.+..+.. ..|..+++|++|+|++|. +..++...
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~--------~~~~~l~~L~~L~Ls~N~-------i~~~~~~~-- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPP--------GAFSPYKKLRRIDLSNNQ-------ISELAPDA-- 75 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECCSSC-------CCEECTTT--
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCH--------hHhhCCCCCCEEECCCCc-------CCCcCHHH--
Confidence 456777777888887654 567777777776654321 147778888888888887 45553322
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|..+++|++|+|++|.+. .+|. .+.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.++++..+
T Consensus 76 ------~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 76 ------FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp ------TTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------hhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 777888888888888744 4554 45778888888888887766667778888888888888888888887766
Q ss_pred CCcCCceEEEeecCCC
Q 047161 565 FPSRILKVYLFVDTRD 580 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~ 580 (720)
..+++|+.|++.+|.+
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 6668888888876654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=150.53 Aligned_cols=136 Identities=19% Similarity=0.089 Sum_probs=67.5
Q ss_pred cCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
.+++|++|+|++|.+.+..|..+.++++|++|+|++|.+....|..|..+++|++|+|++|.+.++++..+..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 45555555555555333333445555555555555554333333345555555555555555555544444444555555
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCC--Cceee
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPK--FKHLK 650 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~--L~~L~ 650 (720)
++++|.+..++...|.+ +..+++| +.|+|++|.++.+| ..+..++. |+.|+
T Consensus 142 ~L~~N~l~~l~~~~~~~---------------------~~~l~~L-----~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 142 YLSQNQISRFPVELIKD---------------------GNKLPKL-----MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCSCCGGGTC-------------------------CTTC-----CEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred ECCCCcCCeeCHHHhcC---------------------cccCCcC-----CEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence 55444444332222110 1234443 56777777777766 34555655 36677
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|++|+
T Consensus 196 l~~N~ 200 (361)
T 2xot_A 196 LHNNP 200 (361)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 77664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=135.27 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=107.7
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
+.++++++. ++.+|.. +. ++|+.|++++|.+.+..|..+..+++|++|+|++|.+.+..|..
T Consensus 14 ~~v~c~~~~-------l~~iP~~---------l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKG-------LTEIPTN---------LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp TEEECTTSC-------CSSCCSS---------CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CEEEcCCCC-------cCcCCCc---------cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 466676665 5677765 22 57888888888855555557888888888888888776666788
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 619 (720)
|..+++|++|+|++|.+..+++..+..+++|+.|++++|.+..+.+. .+.++++|
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~L- 130 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD------------------------AFQDLHNL- 130 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------TTTTCTTC-
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH------------------------HcCCCCCC-
Confidence 88888888888888888888887776668888888877766554332 24445544
Q ss_pred cccccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 620 ELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 620 ~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 131 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 131 ----NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 667777777777663 46777777788877775
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=136.25 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=114.5
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++++++.++.+|..+. ..+..|++++|++..+.. ...|..+++|++|+|++|. +..++...
T Consensus 14 ~~l~~s~n~l~~iP~~~~-~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~-------i~~i~~~~-- 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-QYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNK-------ITDIEEGA-- 76 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSC-------CCEECTTT--
T ss_pred CEeEeCCCCcccCccCCC-CCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCc-------CCEECHHH--
Confidence 467777777777776553 344667777776654311 0126788889999998887 56666533
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+..+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+.++..+.
T Consensus 77 ------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 77 ------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred ------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 77888899999999886665566688889999999998887777778888889999999999988888777776
Q ss_pred CcCCceEEEeecCCCC
Q 047161 566 PSRILKVYLFVDTRDH 581 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~ 581 (720)
.+++|+.|++.+|.+.
T Consensus 151 ~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 151 TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCCEEECCSCCEE
T ss_pred CCCCCCEEEecCcCCc
Confidence 6688888888777554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-16 Score=162.77 Aligned_cols=228 Identities=10% Similarity=0.062 Sum_probs=123.7
Q ss_pred EEecCCCCCC-CCCCCCC-CcceEeeCCCCchhHHhhhccCccccCCCCCCC-CceeeecCCCCCCCCCCCCcccCccch
Q 047161 408 LQWHGYPLKS-LPSSMEM-DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAP-NLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 408 L~~~~~~~~~-lp~~~~~-~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~-~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
+.++.+.+.. +|..+.. .++++|++++|.+....... -...|..++ +|++|+|++|. +......
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~N~-------l~~~~~~-- 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE----LIQAFANTPASVTSLNLSGNS-------LGFKNSD-- 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH----HHHHHHTCCTTCCEEECCSSC-------GGGSCHH--
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH----HHHHHHhCCCceeEEECcCCC-------CCHHHHH--
Confidence 4455555553 2333333 34778888887776542100 001245566 78888888876 3333221
Q ss_pred hhhHHHHhccC-CCCcEEeccCCCCCcccCCCC----CCC-CCCCEEeccCCCCCcccCcC----cCC-CCCCCEEeccC
Q 047161 485 TESLQKLIELL-TGLVFLNLNDCKILVRLPSTI----NGW-KSLRTVNLSRCSKLENMPES----LGQ-MESLEELDVSG 553 (720)
Q Consensus 485 ~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~i----~~l-~~L~~L~L~~~~~l~~lp~~----~~~-L~~L~~L~L~~ 553 (720)
.+...+... ++|++|+|++|.+....+..+ ..+ ++|++|++++|.+....+.. +.. .++|++|++++
T Consensus 70 --~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 70 --ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp --HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred --HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 111123333 788888888887544444433 333 78888888887654433322 333 25788888888
Q ss_pred cccccCCccc-----cCCcCCceEEEeecCCCCCCCCCccccc-----ccccccccCCCCcccccCCC----CCC-CCCC
Q 047161 554 TVIRQPVPSI-----FFPSRILKVYLFVDTRDHRTSSSSWHLW-----FPFSLMQKGSSDSMALMLPS----LSG-LCSL 618 (720)
Q Consensus 554 n~l~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~----l~~-l~~L 618 (720)
|.+....... ....++|+.|++++|.+.......+... ..++.++++.+......... +.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 8777433221 1222378888888777766544333322 46666666666554422111 111 1233
Q ss_pred CcccccEEECCCCCCcccc-----ccccCCCCCceeeccccc
Q 047161 619 TELNLKKLNLRRNNFVSLR-----GTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.+...+ ..+..+++|+.|++++|.
T Consensus 228 -----~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 228 -----VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -----CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -----eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 56667777665432 233566677777777764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=135.95 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
.++.+++.+..+|..+. .+++.|++++|.+..+. ...|..+++|++|+|++|. +..+|...
T Consensus 23 ~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L~L~~N~-------l~~i~~~~--- 83 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLE--------PGVFDSLINLKELYLGSNQ-------LGALPVGV--- 83 (229)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSC-------CCCCCTTT---
T ss_pred EeEccCCCcCccCCCCC-CCCCEEEcCCCccCccC--------HHHhhCccCCcEEECCCCC-------CCCcChhh---
Confidence 45556666666665543 55666666666654431 1237788899999999887 56777553
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
+..+++|++|+|++|.+.+..+..+..+++|++|+|++|. +..+|..+..+++|++|++++|.+.++++..+..
T Consensus 84 -----~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 84 -----FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred -----cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 6778899999999988554444556889999999999886 4478888888999999999999998888877766
Q ss_pred cCCceEEEeecCCCC
Q 047161 567 SRILKVYLFVDTRDH 581 (720)
Q Consensus 567 ~~~L~~L~l~~~~~~ 581 (720)
+++|+.|++.+|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 688898888776544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=146.98 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=118.7
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC-CCCCceeeecCCCCCCCCCCCCcccCccch
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT-GAPNLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~-~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
+.++.+++.+..+|..+. ..+..|++++|++..+... .|. .+++|++|+|++|. +..++...
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~--------~~~~~l~~L~~L~L~~N~-------i~~i~~~~- 83 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAE--------WTPTRLTNLHSLLLSHNH-------LNFISSEA- 83 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTT--------SSSSCCTTCCEEECCSSC-------CCEECTTT-
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChh--------hhhhcccccCEEECCCCc-------CCccChhh-
Confidence 456667777777776543 3466677777766554222 255 78889999998887 56776543
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|..+++|++|+|++|.+....+..+.++++|++|+|++|.+....|..|..+++|++|+|++|.+..+++..+
T Consensus 84 -------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 84 -------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp -------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred -------ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 7788899999999988655545568888999999999887776667788889999999999999888888765
Q ss_pred ---CCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 565 ---FPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 565 ---~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
..+++|+.|++++|.+..++...+..+.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 3358888898888877776655444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-16 Score=164.47 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=96.9
Q ss_pred chhccCCcceEEEeccccCCc--------ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCcc
Q 047161 377 AFLKMTNLRLLKIHNLQLPAG--------LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLI 448 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~--------~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~ 448 (720)
.+..+++|+.|++++|.+... +.. ...++.|++++|.+..+...+. ..+..+.
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~-----------~~~~~l~------- 87 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIP-----------EALRLLL------- 87 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSH-----------HHHHHHH-------
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchh-----------HHHHHHH-------
Confidence 566778899999998877432 222 2357777777765554432110 0001110
Q ss_pred ccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCC-----
Q 047161 449 RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGW----- 519 (720)
Q Consensus 449 ~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l----- 519 (720)
..+..+++|++|+|++|. +.. .....++..+..+++|++|+|++|.+... ++..+..+
T Consensus 88 --~~l~~~~~L~~L~Ls~n~-------l~~----~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 88 --QALLKCPKLHTVRLSDNA-------FGP----TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp --HHHTTCTTCCEEECCSCC-------CCT----TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHhhCCcccEEECCCCc-------CCH----HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 124566777777777765 221 01113344467777777777777775322 22223333
Q ss_pred ----CCCCEEeccCCCCC-cccC---cCcCCCCCCCEEeccCcccc--c---CCccccCCcCCceEEEeecCCC
Q 047161 520 ----KSLRTVNLSRCSKL-ENMP---ESLGQMESLEELDVSGTVIR--Q---PVPSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 520 ----~~L~~L~L~~~~~l-~~lp---~~~~~L~~L~~L~L~~n~l~--~---~~~~~~~~~~~L~~L~l~~~~~ 580 (720)
++|++|++++|.+. ..+| ..+..+++|++|++++|.+. + ..+..+..+++|+.|++++|.+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 77777777777654 3344 34556777777777777766 2 2231223337777777766654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-14 Score=159.34 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=140.2
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|+.|++++|. +..+| .++.+++|++|+|++|.+.+ +|. +..|++|+.|+|++|.+.+++ .+. .+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~-~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLS-SLK-DLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCT-TST-TCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCCh-hhc-cCCCCC
Confidence 5678999999999998 56666 58999999999999997554 444 899999999999999999865 344 459999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+ ..+..+..|+.|.++.+.+... +.+..+++| +.|+|++|.+..++. +..+++|+.|+|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-----~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-----DTLSLEDNQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC-----SEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC-----CEEECcCCcCCCchh-hccCCCCCEEEC
Confidence 999999998876 4588889999999998876654 557777766 788999999998876 899999999999
Q ss_pred cccccccccCCcc--cccceEeeecCccc
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCTSL 678 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~~L 678 (720)
++| .+..+|.+. ++|+.|++++|+..
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence 999 466666544 57999999988643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=132.13 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=105.1
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCc
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
+.+++++|. ++.+|.. + ...+++|+|++|.+.+..| ..++++++|++|+|++|.+.+..|.
T Consensus 14 ~~l~~s~n~-------l~~iP~~---------~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQK-------LNKIPEH---------I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSC-------CSSCCSC---------C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCC-------cccCccC---------C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 477777776 5667765 2 2356788888888544434 3467888888888888876655555
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSL 618 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L 618 (720)
.|..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+. .+.++++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~l~~L 131 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND------------------------SFIGLSSV 131 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT------------------------SSTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh------------------------HcCCCccC
Confidence 788888888888888888888887776668888888877665554333 24445544
Q ss_pred CcccccEEECCCCCCccc-cccccCCCCCceeeccccc
Q 047161 619 TELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus 132 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 132 -----RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -----SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred -----CEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 5677777777766 5667777777777777775
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=141.43 Aligned_cols=150 Identities=18% Similarity=0.253 Sum_probs=88.5
Q ss_pred cCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccC
Q 047161 450 TPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 450 ~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~ 529 (720)
++.+..+++|++|++++|. +..++ . ++.+++|++|++++|.+ ..+|. ++++++|++|++++
T Consensus 34 ~~~~~~l~~L~~L~l~~n~-------i~~l~-~---------l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSN-------IQSLA-G---------MQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp EECHHHHTTCSEEECTTSC-------CCCCT-T---------GGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCS
T ss_pred ccchhhcCcCcEEECcCCC-------cccch-H---------HhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCC
Confidence 3445566666666666664 34444 2 55566666666666653 33443 66666666666666
Q ss_pred CCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC
Q 047161 530 CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609 (720)
Q Consensus 530 ~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 609 (720)
|.+ ..+|.... ++|++|++++|.+.+.+ .+ ..+++|+.|++++|.+..+
T Consensus 95 N~l-~~l~~~~~--~~L~~L~L~~N~l~~~~-~l-~~l~~L~~L~Ls~N~i~~~-------------------------- 143 (263)
T 1xeu_A 95 NRL-KNLNGIPS--ACLSRLFLDNNELRDTD-SL-IHLKNLEILSIRNNKLKSI-------------------------- 143 (263)
T ss_dssp SCC-SCCTTCCC--SSCCEEECCSSCCSBSG-GG-TTCTTCCEEECTTSCCCBC--------------------------
T ss_pred Ccc-CCcCcccc--CcccEEEccCCccCCCh-hh-cCcccccEEECCCCcCCCC--------------------------
Confidence 643 33443222 56666666666666543 22 2236666666655544332
Q ss_pred CCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 610 PSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 610 ~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+.+..+++| +.|++++|.++.+ ..+..+++|+.|++++|+
T Consensus 144 ~~l~~l~~L-----~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 VMLGFLSKL-----EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGGGGCTTC-----CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hHHccCCCC-----CEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 234455554 6778888888777 567788888888888875
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-13 Score=131.97 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=117.2
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
.-+.++.+++. +..+|.. + .++|++|+|++|.+.+..|..+.++++|++|+|++|.+ +.+|
T Consensus 20 s~~~v~c~~~~-------l~~ip~~---------~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~ 80 (229)
T 3e6j_A 20 SGTTVDCRSKR-------HASVPAG---------I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP 80 (229)
T ss_dssp ETTEEECTTSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred eCCEeEccCCC-------cCccCCC---------C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcC
Confidence 46778887766 6788876 3 37899999999997777788899999999999999875 4455
Q ss_pred -cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 538 -ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 538 -~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
..+..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..++ ..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~ 135 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLT 135 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCC
Confidence 55789999999999999999998887776689999998777654322 1244455
Q ss_pred CCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccc
Q 047161 617 SLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~ 655 (720)
+| +.|+|++|.++.+| ..+..+++|+.|++++|+
T Consensus 136 ~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 136 HL-----THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TC-----SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CC-----CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 55 77888899888887 457888999999998886
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-15 Score=156.62 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=141.9
Q ss_pred CcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEecc
Q 047161 425 DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLN 504 (720)
Q Consensus 425 ~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls 504 (720)
..++.+++.++.+... .+.+..+++|++|++++|. +. ...++..+..+++|++|+++
T Consensus 70 ~~l~~L~l~~n~l~~~---------~~~~~~~~~L~~L~L~~~~-------l~-------~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP---------LAEHFSPFRVQHMDLSNSV-------IE-------VSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp TTCSEEECTTCEECSC---------CCSCCCCBCCCEEECTTCE-------EC-------HHHHHHHHTTBCCCSEEECT
T ss_pred ccceEEEcCCcccccc---------chhhccCCCCCEEEccCCC-------cC-------HHHHHHHHhhCCCCCEEeCc
Confidence 4677788887766432 3457788999999999875 11 12244448889999999999
Q ss_pred CCCCCcccCCCCCCCCCCCEEeccCCCCCc--ccCcCcCCCCCCCEEeccCc-ccccC-CccccCCcC-CceEEEeecCC
Q 047161 505 DCKILVRLPSTINGWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGT-VIRQP-VPSIFFPSR-ILKVYLFVDTR 579 (720)
Q Consensus 505 ~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~L~~n-~l~~~-~~~~~~~~~-~L~~L~l~~~~ 579 (720)
+|.+.+..|..++.+++|++|++++|..++ .+|..+.++++|++|++++| .+.+. .+.....++ +|+.|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 998777788888889999999999984343 36777888999999999999 77753 233333347 89999886653
Q ss_pred CCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCC-Cc-cccccccCCCCCceeecccccc
Q 047161 580 DHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNN-FV-SLRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 580 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~ 656 (720)
.. ..+..++ .+..+++| +.|++++|. ++ ..+..+..+++|++|++++|..
T Consensus 207 ~~----------------------~~~~~l~~~~~~~~~L-----~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 207 KN----------------------LQKSDLSTLVRRCPNL-----VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp GG----------------------SCHHHHHHHHHHCTTC-----SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred cc----------------------CCHHHHHHHHhhCCCC-----CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 10 0101111 13445555 788999998 55 5667889999999999999963
Q ss_pred cc-----ccCCcccccceEeeecC
Q 047161 657 LR-----SLSELPSDIKKVRVHGC 675 (720)
Q Consensus 657 L~-----~lp~lp~~L~~L~l~~c 675 (720)
+. .+..+ ++|+.|++.+|
T Consensus 260 ~~~~~~~~l~~~-~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEI-PTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGC-TTCCEEECTTS
T ss_pred CCHHHHHHHhcC-CCCCEEeccCc
Confidence 32 23333 56999999999
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-15 Score=157.39 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=163.0
Q ss_pred eEEEeccccCCc---ccCccccceEEEecCCCCCCCCC-----CC-CCC-cceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 386 LLKIHNLQLPAG---LESLSDELRLLQWHGYPLKSLPS-----SM-EMD-KTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 386 ~L~l~~~~l~~~---~~~l~~~l~~L~~~~~~~~~lp~-----~~-~~~-~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+++++.+.+... +...+..++.|++++|.++..+. .+ ... ++++|++++|.+....... +. ..+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~--~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LV--QILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HH--HHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HH--HHHhc
Confidence 345666666432 34456669999999999887763 22 233 7899999999886542110 00 00122
Q ss_pred -CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-CCCcEEeccCCCCCcccCCC----CCC-CCCCCEEecc
Q 047161 456 -APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-TGLVFLNLNDCKILVRLPST----ING-WKSLRTVNLS 528 (720)
Q Consensus 456 -l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~----i~~-l~~L~~L~L~ 528 (720)
+++|++|+|++|. +...+.. .+...+..+ ++|++|+|++|.+....+.. +.. .++|++|+|+
T Consensus 78 ~~~~L~~L~Ls~n~-------l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 78 IPANVTSLNLSGNF-------LSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp SCTTCCEEECCSSC-------GGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred cCCCccEEECcCCc-------CChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 2789999999987 3433322 222235555 89999999999854443333 233 3689999999
Q ss_pred CCCCCc----ccCcCcCCCC-CCCEEeccCcccccCCccccC----Cc-CCceEEEeecCCCCCCCCC----cccc-ccc
Q 047161 529 RCSKLE----NMPESLGQME-SLEELDVSGTVIRQPVPSIFF----PS-RILKVYLFVDTRDHRTSSS----SWHL-WFP 593 (720)
Q Consensus 529 ~~~~l~----~lp~~~~~L~-~L~~L~L~~n~l~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~----~~~~-l~~ 593 (720)
+|.+.. .++..+..++ +|++|++++|.+.+..+..+. .. ++|+.|++++|.+...... .+.. ...
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 987653 3444555665 899999999999876653222 22 5899999999987763222 2223 347
Q ss_pred ccccccCCCCcccccCC----CCCCCCCCCcccccEEECCCCCC--------ccccccccCCCCCceeeccccc
Q 047161 594 FSLMQKGSSDSMALMLP----SLSGLCSLTELNLKKLNLRRNNF--------VSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 594 l~~l~l~~~~~~~~~~~----~l~~l~~L~~L~L~~L~Ls~n~l--------~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
++.++++.|........ .+..+++| +.|++++|.+ ..++..+..+++|+.|++++|+
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L-----~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHL-----QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTC-----SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCc-----cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 88888888876554331 24555655 7788888873 3445567788899999999986
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=132.38 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcc-cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTT-LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~-lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
.+..+++|++|++++|. +.. .+.. ++.+++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 83 ~l~~l~~L~~L~l~~n~-------l~~~~~~~---------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKD-------VTSDKIPN---------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp GGTTCTTCCEEEEECTT-------CBGGGSCC---------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred hhhcCCCCCEEEeECCc-------cCcccChh---------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 35667777777777776 333 3343 666777777777777766666667777777777777777
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 580 (720)
..++.+| .+..+++|++|++++|.+.+.+ .+.. +++|+.|++.+|.+
T Consensus 147 ~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~-l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 147 GAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIED-FPKLNQLYAFSQTI 193 (197)
T ss_dssp TBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGG-CSSCCEEEECBC--
T ss_pred CCccccH-hhcCCCCCCEEECCCCCCcChH-Hhcc-CCCCCEEEeeCccc
Confidence 6455665 5777777777777777777655 3333 37777777766654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-14 Score=161.59 Aligned_cols=121 Identities=16% Similarity=0.063 Sum_probs=89.1
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.|..+++|+.|+|++|. +..+|.. +..+++|++|+|++|.+ ..+|.+|++|++|++|+|++|.
T Consensus 219 ~~~~l~~L~~L~Ls~n~-------l~~l~~~---------~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-------IFNISAN---------IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ---CCCCCCEEECTTSC-------CSCCCGG---------GGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSC
T ss_pred hhccCCCCcEEECCCCC-------CCCCChh---------hcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCc
Confidence 36777888888888877 4667766 56788888888888874 4788888888888888888876
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLW 591 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 591 (720)
+. .+|..+++|++|++|+|++|.+..+|..+.. +++|+.|++++|.+.+..+..+..+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCccChhhhc-CCCccEEeCCCCccCCCChHHHhhc
Confidence 54 7788888888888888888888777666444 4888888888887777655555443
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-15 Score=134.63 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=65.9
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||++|+|++++++|+.|.++|.+||++|+++|||+|++|+.|.||++|++++ |++||+|.|
T Consensus 47 gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~ 126 (154)
T 3h16_A 47 GAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSP 126 (154)
T ss_dssp TCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCC
T ss_pred CCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCc
Confidence 8999999989999999999999999999999999999999999999999876 999999999
Q ss_pred hHHHHHHHH
Q 047161 62 SFHEAFAKH 70 (720)
Q Consensus 62 ~~~~~~~~~ 70 (720)
.|+++|..+
T Consensus 127 ~~~~~~~~~ 135 (154)
T 3h16_A 127 TMADKLAFN 135 (154)
T ss_dssp CCCSSCCEE
T ss_pred cHHHHHhhh
Confidence 999886554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-13 Score=133.71 Aligned_cols=170 Identities=19% Similarity=0.142 Sum_probs=129.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.+..+.+.++.+..++......+++.|+++++.+..+ +.+..+++|++|+|++|. +..++.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~N~-------i~~~~~-- 80 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL----------AGMQFFTNLKELHLSHNQ-------ISDLSP-- 80 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC----------TTGGGCTTCCEEECCSSC-------CCCCGG--
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc----------hHHhhCCCCCEEECCCCc-------cCCChh--
Confidence 3556778888888887444567888999998877543 467889999999999997 455554
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
++.+++|++|++++|. +..+|.... ++|++|++++|.+. .+| .+..+++|++|++++|.+.+.+ .+
T Consensus 81 --------l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l 146 (263)
T 1xeu_A 81 --------LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-ML 146 (263)
T ss_dssp --------GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GG
T ss_pred --------hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HH
Confidence 6789999999999998 455776443 99999999999654 455 5899999999999999999875 33
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG 638 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~ 638 (720)
. .+++|+.|++++|.+... ..+..+++| +.|++++|.+...|.
T Consensus 147 ~-~l~~L~~L~L~~N~i~~~--------------------------~~l~~l~~L-----~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 147 G-FLSKLEVLDLHGNEITNT--------------------------GGLTRLKKV-----NWIDLTGQKCVNEPV 189 (263)
T ss_dssp G-GCTTCCEEECTTSCCCBC--------------------------TTSTTCCCC-----CEEEEEEEEEECCCE
T ss_pred c-cCCCCCEEECCCCcCcch--------------------------HHhccCCCC-----CEEeCCCCcccCCcc
Confidence 3 449999999977765442 234556655 667777777765553
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=122.45 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceE
Q 047161 494 LLTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 572 (720)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+.++..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777744 3677777777777777777775433 3 56677777777777777777755555543467777
Q ss_pred EEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc----cccCCCCCce
Q 047161 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG----TINHLPKFKH 648 (720)
Q Consensus 573 L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~----~i~~l~~L~~ 648 (720)
|++++|.+..++. +..+..+++| +.|++++|.++.+|. .+..+++|++
T Consensus 100 L~Ls~N~l~~~~~-----------------------~~~l~~l~~L-----~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 100 LNLSGNKLKDIST-----------------------LEPLKKLECL-----KSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp EECBSSSCCSSGG-----------------------GGGGSSCSCC-----CEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred EeccCCccCcchh-----------------------HHHHhcCCCC-----CEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 7776654443210 1223445554 778888898888876 6788899999
Q ss_pred eeccccc
Q 047161 649 LKLDDCK 655 (720)
Q Consensus 649 L~L~~c~ 655 (720)
|++++|.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 9998885
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=120.98 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=51.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..+..+++|++|++++|.+.+.++..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44555666666666655444455555666666666666554444444455566666666666666655555444445666
Q ss_pred EEEeecCCCC
Q 047161 572 VYLFVDTRDH 581 (720)
Q Consensus 572 ~L~l~~~~~~ 581 (720)
.|++.+|.+.
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 6666555544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-14 Score=161.44 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=74.8
Q ss_pred hccCCcceEEEeccccCCc----c---cCccccceEEEecCCCCCCCCC-----CC-CCCcceEeeCCCCchhHHhhhcc
Q 047161 379 LKMTNLRLLKIHNLQLPAG----L---ESLSDELRLLQWHGYPLKSLPS-----SM-EMDKTLECNMCYRRIEQFWKGIK 445 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~----~---~~l~~~l~~L~~~~~~~~~lp~-----~~-~~~~l~~L~l~~~~i~~l~~~~~ 445 (720)
..+++|+.|++++|.+... + ......++.|+++++.+..+.. .+ ...+++.|++.++.+..+..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~--- 237 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--- 237 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH---
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH---
Confidence 4677888888888765322 1 1122457788888777653321 11 24567777777766554321
Q ss_pred CccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEE
Q 047161 446 NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTV 525 (720)
Q Consensus 446 ~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L 525 (720)
.+..+++|+.|+++++.... .....+.. +..+++|+.|+++++. ...+|..+..+++|++|
T Consensus 238 ------~~~~~~~L~~L~l~~~~~~~---~~~~~~~~---------l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 238 ------FFKAAANLEEFCGGSLNEDI---GMPEKYMN---------LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL 298 (592)
T ss_dssp ------HHHHCTTCCEEEECBCCCCT---TCTTSSSC---------CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred ------HHhhhhHHHhhccccccccc---chHHHHHH---------hhccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence 14455667777776432110 00011111 3444455555554432 34444444455555555
Q ss_pred eccCCCCCccc-CcCcCCCCCCCEEecc
Q 047161 526 NLSRCSKLENM-PESLGQMESLEELDVS 552 (720)
Q Consensus 526 ~L~~~~~l~~l-p~~~~~L~~L~~L~L~ 552 (720)
++++|...... +..+..+++|++|+++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 55555422211 1223445555555554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-12 Score=119.07 Aligned_cols=109 Identities=21% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|+|++|. +..+|.. +..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..
T Consensus 31 ~~l~~L~L~~n~-------i~~ip~~---------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 31 RDVTELYLDGNQ-------FTLVPKE---------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp TTCCEEECCSSC-------CCSCCGG---------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCEEECCCCc-------CchhHHH---------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 478888888887 5677755 788899999999999866666677888999999999998766666
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 581 (720)
|..|..+++|++|+|++|.+..+++..+..+++|+.|++.+|...
T Consensus 95 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 667888999999999999999888877766688999988776543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=118.90 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCCCceeeecCCCCCCCCCCCCc--ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLT--TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~--~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..++|++|++++|. +. .+|.. +..+++|++|++++|.+. .+ ..++.+++|++|++++|.+
T Consensus 22 ~~~~L~~L~l~~n~-------l~~~~i~~~---------~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 22 TPAAVRELVLDNCK-------SNDGKIEGL---------TAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp CTTSCSEEECCSCB-------CBTTBCSSC---------CGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCC
T ss_pred CcccCCEEECCCCC-------CChhhHHHH---------HHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcC
Confidence 44789999999987 45 67765 788999999999999854 44 7888999999999999987
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~ 611 (720)
.+.+|..+.++++|++|++++|.+.+.+. ..+..+++|+.|++++|.+...++.. ...
T Consensus 84 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------------------~~~ 142 (168)
T 2ell_A 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR---------------------ESV 142 (168)
T ss_dssp CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH---------------------HHH
T ss_pred chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH---------------------HHH
Confidence 77688878889999999999999998763 44444589999999777655432200 002
Q ss_pred CCCCCCCCcccccEEECCCCCCcccccc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFVSLRGT 639 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~~lp~~ 639 (720)
+..+++| +.|++++|.+.++|.+
T Consensus 143 ~~~l~~L-----~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 143 FKLLPQL-----TYLDGYDREDQEAPDS 165 (168)
T ss_dssp HTTCSSC-----CEETTEETTSCBCCSS
T ss_pred HHhCccC-----cEecCCCCChhhcccc
Confidence 4455655 6778888888887754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-13 Score=153.24 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccC
Q 047161 521 SLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKG 600 (720)
Q Consensus 521 ~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~ 600 (720)
.|++|+|++|.+ ..+|. ++.+++|+.|+|++|.+..+|..+..+ ++|+.|++++|.+.+
T Consensus 442 ~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l-~~L~~L~Ls~N~l~~------------------ 500 (567)
T 1dce_A 442 DVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAAL-RCLEVLQASDNALEN------------------ 500 (567)
T ss_dssp TCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGC-TTCCEEECCSSCCCC------------------
T ss_pred CceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcC-CCCCEEECCCCCCCC------------------
Confidence 356666666533 33554 666666666666666666554433333 566666665444332
Q ss_pred CCCcccccCCCCCCCCCCCcccccEEECCCCCCccc--cccccCCCCCceeeccccccccccC
Q 047161 601 SSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL--RGTINHLPKFKHLKLDDCKRLRSLS 661 (720)
Q Consensus 601 ~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~lp 661 (720)
+|.++++++| +.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|
T Consensus 501 --------lp~l~~l~~L-----~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 501 --------VDGVANLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp --------CGGGTTCSSC-----CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred --------CcccCCCCCC-----cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 2245566665 6788888888877 7888888888888888885 44444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-12 Score=115.76 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 495 LTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
.++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+ + ..++.+++|++|++++|.+.+.++..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777754 4677777777777777777775443 3 567777777777777777777555544433667777
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc----cccCCCCCcee
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG----TINHLPKFKHL 649 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L 649 (720)
++++|.+..++ .+..+..+++| +.|++++|.++.+|. .+..+++|+.|
T Consensus 94 ~ls~N~i~~~~-----------------------~~~~~~~l~~L-----~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGNKIKDLS-----------------------TIEPLKKLENL-----KSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTSCCCSHH-----------------------HHGGGGGCTTC-----CEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCCcCCChH-----------------------HHHHHhhCCCC-----CEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 66555433211 00123445544 677888888887775 56778888888
Q ss_pred eccc
Q 047161 650 KLDD 653 (720)
Q Consensus 650 ~L~~ 653 (720)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 8763
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=116.94 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=100.7
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCCCCcccC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
++++++++. ++.+|.. +. .+|++|++++|.+ ..+|. .++++++|++|+|++|.+.+..|
T Consensus 11 ~~l~~s~~~-------l~~ip~~---------~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRG-------LKEIPRD---------IP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSC-------CSSCCSC---------CC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCC-------cCcCccC---------CC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 688898876 6788876 32 3899999999985 44554 38899999999999998887778
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..|..+++|++|+|++|.+.+.++..+..+++|+.|++++|.+.+..+. .+..+++
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~ 127 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG------------------------SFEHLNS 127 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT------------------------SSTTCTT
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH------------------------HhhcCCC
Confidence 8999999999999999999999988776679999999987766554333 2445555
Q ss_pred CCcccccEEECCCCCCc
Q 047161 618 LTELNLKKLNLRRNNFV 634 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~ 634 (720)
| +.|+|++|.+.
T Consensus 128 L-----~~L~L~~N~l~ 139 (192)
T 1w8a_A 128 L-----TSLNLASNPFN 139 (192)
T ss_dssp C-----CEEECTTCCBC
T ss_pred C-----CEEEeCCCCcc
Confidence 5 67778888776
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-11 Score=112.28 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|+.|++++|. +..++... ++.+++|++|++++|.+.+..+..++++++|++|++++|.+.+..
T Consensus 28 ~~l~~L~l~~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 28 SSATRLELESNK-------LQSLPHGV--------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp TTCSEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEEeCCCc-------ccEeCHHH--------hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 467777777765 34555432 566777777777777644333344567777777777777555444
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 581 (720)
|..+..+++|++|++++|.+.++++..+..+++|+.|++.+|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444667777777777777777777666555577777777666544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=116.12 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
++++++++. ++.+|.. + .++|++|++++|. +..+|..+.++++|++|+|++|.+.+..|..
T Consensus 13 ~~l~~~~~~-------l~~ip~~---------~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKG-------LKVLPKG---------I--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQS 73 (193)
T ss_dssp TEEECTTSC-------CSSCCSC---------C--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred CEEEcCCCC-------CCcCCCC---------C--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhH
Confidence 578888876 6778876 2 3589999999998 5688899999999999999999877666677
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
|..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..+++
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9999999999999999999998877777999999998777665443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.1e-12 Score=117.73 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=86.6
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-CCCcEEeccCCCCCcccCCCCCCCCCCCEEeccC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~ 529 (720)
+.+..+++|+.|++++|. +..+|. +..+ ++|++|++++|.+. .+ ..++.+++|++|++++
T Consensus 13 ~~~~~~~~L~~L~l~~n~-------l~~i~~----------~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-------IPVIEN----------LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSCCC----------GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCS
T ss_pred HhcCCcCCceEEEeeCCC-------CchhHH----------hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCC
Confidence 446667788888888876 344543 3333 37888888887743 34 5677777777777777
Q ss_pred CCCCcccCcC-cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc
Q 047161 530 CSKLENMPES-LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM 608 (720)
Q Consensus 530 ~~~l~~lp~~-~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 608 (720)
|.+. .+|.. ++.+++|++|++++|.+...++-
T Consensus 74 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------------------------------------------- 106 (176)
T 1a9n_A 74 NRIC-RIGEGLDQALPDLTELILTNNSLVELGDL---------------------------------------------- 106 (176)
T ss_dssp SCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGG----------------------------------------------
T ss_pred Cccc-ccCcchhhcCCCCCEEECCCCcCCcchhh----------------------------------------------
Confidence 7544 44543 36777777777777776554330
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCcccccc----ccCCCCCceeeccccc
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSLRGT----INHLPKFKHLKLDDCK 655 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~ 655 (720)
..+..+++| +.|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 107 -~~l~~l~~L-----~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 107 -DPLASLKSL-----TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -GGGGGCTTC-----CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -HhhhcCCCC-----CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 012223333 6677788888877764 7788888888888875
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-12 Score=115.20 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCc--ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLT--TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~--~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..++|+.|++++|. +. .+|.. ++.+++|++|++++|.+.+ + ..++++++|++|++++|.+
T Consensus 15 ~~~~l~~L~l~~n~-------l~~~~~~~~---------~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 15 TPSDVKELVLDNSR-------SNEGKLEGL---------TDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp CGGGCSEEECTTCB-------CBTTBCCSC---------CTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCC
T ss_pred CCccCeEEEccCCc-------CChhHHHHH---------HhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcc
Confidence 34678888888876 34 55654 6777888888888887443 3 6677788888888888776
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCC-ccccCCcCCceEEEeecCCCCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPSRILKVYLFVDTRDHRTS 584 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 584 (720)
.+.+|..++.+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+...+
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 6657776777888888888888877754 233444477888888766655443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-11 Score=110.97 Aligned_cols=132 Identities=16% Similarity=0.264 Sum_probs=99.2
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.+..+|..+. .++..|+++++++..+.. ..|..+++|++|++++|. +..+|...
T Consensus 10 ~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-------l~~~~~~~-- 71 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSQNQ-------IQSLPDGV-- 71 (177)
T ss_dssp TEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSC-------CCCCCTTT--
T ss_pred CEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCH--------HHhcCcccccEEECCCCc-------ceEeChhH--
Confidence 345566666666665443 466677777666543211 136889999999999997 56777653
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcCCCCCCCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|++|++++|.+.+..|..++++++|++|++++|.+. .+|. .+..+++|++|++++|.+.+..+.
T Consensus 72 ------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 72 ------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ------ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 688999999999999966555556789999999999999765 4554 468899999999999999886653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-13 Score=156.52 Aligned_cols=316 Identities=13% Similarity=0.124 Sum_probs=146.5
Q ss_pred hccCCcceEEEeccccCCc----ccCccccceEEEecCC-CCCC--CCCCC-CCCcceEeeCCCCchhHHhhhccCcccc
Q 047161 379 LKMTNLRLLKIHNLQLPAG----LESLSDELRLLQWHGY-PLKS--LPSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRT 450 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~----~~~l~~~l~~L~~~~~-~~~~--lp~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~ 450 (720)
..+++|+.|+++++.+... +......++.|++.++ .++. ++... ...++++|++.++.+..... ..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-----~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-----HWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG-----GGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch-----HHH
Confidence 3455666666666654321 1101234666666655 2221 22211 23456666666655322100 001
Q ss_pred CC-CCCCCCceeeecCCCC-CC---------CCCCCCcccCc--cchhhhHHHHhccCCCCcEEeccCCCC---------
Q 047161 451 PD-FTGAPNLEELILDGCK-RL---------QNCTSLTTLPR--EIATESLQKLIELLTGLVFLNLNDCKI--------- 508 (720)
Q Consensus 451 ~~-~~~l~~L~~L~L~~~~-~l---------~~~~~L~~lp~--~~~~~~l~~~i~~l~~L~~L~Ls~n~~--------- 508 (720)
+. ...+++|++|++++|. .+ .++++|+.+.- ......++..+..+++|+.|+++++..
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH
Confidence 11 2255666666666664 11 11233333221 111222555577777888887554421
Q ss_pred ----------C-----------cccCCCCCCCCCCCEEeccCCCCCcc-cCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 509 ----------L-----------VRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 509 ----------~-----------~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
+ ..+|..+..+++|++|++++|.+... ++..+..+++|++|++++|......+.+...
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~ 336 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHh
Confidence 0 11232233567778888877763322 2223557777888888777211122222233
Q ss_pred cCCceEEEeecC------CCCCCCCCcc----cccccccccccCCCCcccccCCCCC-CCCCCCcc--------------
Q 047161 567 SRILKVYLFVDT------RDHRTSSSSW----HLWFPFSLMQKGSSDSMALMLPSLS-GLCSLTEL-------------- 621 (720)
Q Consensus 567 ~~~L~~L~l~~~------~~~~~~~~~~----~~l~~l~~l~l~~~~~~~~~~~~l~-~l~~L~~L-------------- 621 (720)
+++|+.|++.++ ....+....+ ..+..|+.+.+.+++........+. .+++|+.|
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 477888877442 1111111111 1233444444433333222111111 12222211
Q ss_pred ----------------cccEEECCCCCCcc-cccccc-CCCCCceeeccccccccc--cCCc---ccccceEeeecCccc
Q 047161 622 ----------------NLKKLNLRRNNFVS-LRGTIN-HLPKFKHLKLDDCKRLRS--LSEL---PSDIKKVRVHGCTSL 678 (720)
Q Consensus 622 ----------------~L~~L~Ls~n~l~~-lp~~i~-~l~~L~~L~L~~c~~L~~--lp~l---p~~L~~L~l~~c~~L 678 (720)
+|+.|++++ .++. .+..+. .+++|+.|+|++|. +.. ++.+ .++|+.|++++|+.-
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 124445544 2321 112232 26677777777775 211 1111 256999999998863
Q ss_pred ccch-hhccCchhHhhhhhhcccch
Q 047161 679 ATIS-DALRSCNSATSRIFCINCPK 702 (720)
Q Consensus 679 ~~lp-~~~~~~~~L~~l~~~~nc~~ 702 (720)
.... ..+..+++|+.|.+. +|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMS-SCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEE-SSCC
T ss_pred HHHHHHHHHhCCCCCEEeee-CCCC
Confidence 2222 345568888886654 6665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-12 Score=146.55 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=99.2
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|+.|+|++|. +..+|..++++++|++|+|++|.+. .+|..+++|++|++|+|++|.+..+|..+..+ ++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l-~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC-FQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG-TTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCC-CCCC
Confidence 8889999999999998 4589999999999999999999655 89999999999999999999999877666554 9999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcc-ccccccCCC-CCcee
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVS-LRGTINHLP-KFKHL 649 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L 649 (720)
.|++++|.+..++. .|+.+++| +.|+|++|.++. +|..+..+. .+..|
T Consensus 297 ~L~L~~N~l~~lp~-------------------------~~~~l~~L-----~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 297 YFYFFDNMVTTLPW-------------------------EFGNLCNL-----QFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp EEECCSSCCCCCCS-------------------------STTSCTTC-----CCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCccCh-------------------------hhhcCCCc-----cEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 99997776543322 24555554 566777777763 344443221 11234
Q ss_pred eccccccccccCCcccccceEeeecC
Q 047161 650 KLDDCKRLRSLSELPSDIKKVRVHGC 675 (720)
Q Consensus 650 ~L~~c~~L~~lp~lp~~L~~L~l~~c 675 (720)
+|++|..- ..+|..|..|++..+
T Consensus 347 ~l~~N~l~---~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPE---IPLPHERRFIEINTD 369 (727)
T ss_dssp HHHHCCCC---CCCCCC---------
T ss_pred hhccCccc---CcCccccceeEeecc
Confidence 56655321 234555666666554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-12 Score=147.69 Aligned_cols=223 Identities=11% Similarity=0.021 Sum_probs=115.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC----cccCCCCCCCCCCCEEeccCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL----VRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~----~~lp~~i~~l~~L~~L~L~~~ 530 (720)
.+++|++|+|++|. +.... ...++.....+++|++|++++|.+. ..++..+.++++|++|++++|
T Consensus 162 ~~~~L~~L~L~~~~-------~~~~~----~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 162 HCRKIKTLLMEESS-------FSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HCTTCSEEECTTCE-------EECCC----SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hCCCCCEEECcccc-------ccCcc----hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 45667777777664 11111 1113333556777777777777643 234444556677777777776
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccc---cCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccc
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIR---QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL 607 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 607 (720)
.. ..+|..+.++++|++|+++.+... .........+++|+.|.+.++.. ...+..+..+.+++.+++..+.....
T Consensus 231 ~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 231 EI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp BG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred cH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 43 346666667777777777643221 11112222336777777655322 22334455566677777766653333
Q ss_pred cCCC-CCCCCCCCcccccEEECCCCCCc--cccccccCCCCCceeeccc----------ccccccc--CC---cccccce
Q 047161 608 MLPS-LSGLCSLTELNLKKLNLRRNNFV--SLRGTINHLPKFKHLKLDD----------CKRLRSL--SE---LPSDIKK 669 (720)
Q Consensus 608 ~~~~-l~~l~~L~~L~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~----------c~~L~~l--p~---lp~~L~~ 669 (720)
.+.. +..+++| +.|+++ +.+. .++.....+++|++|++++ |..+... +. -.++|++
T Consensus 309 ~~~~~~~~~~~L-----~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 309 DHCTLIQKCPNL-----EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp HHHHHHTTCTTC-----CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred HHHHHHHhCcCC-----CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 3322 4556655 344444 2222 3344445667777777774 5444321 11 1245777
Q ss_pred EeeecCccccc-chhhccC-chhHhhhhhh
Q 047161 670 VRVHGCTSLAT-ISDALRS-CNSATSRIFC 697 (720)
Q Consensus 670 L~l~~c~~L~~-lp~~~~~-~~~L~~l~~~ 697 (720)
|++ .|..+.. .+..+.. +++|+.|.+.
T Consensus 383 L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 383 MAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred EEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 777 4444432 2223322 5666665553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=124.71 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccccccc-ccccCCCCcccccCCCCCCCCCCCcc
Q 047161 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFS-LMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
+++|+.|++++|.+..+++..+..+.+|+.+.+.+| +..+....|.++..|+ .+.+.. +........|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L--- 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL--- 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE---
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC---
Confidence 566777777777777777776766677777777554 5555555555555555 555544 3333333345555554
Q ss_pred cccEEECCCCCCcccc-ccccCCCCCceee
Q 047161 622 NLKKLNLRRNNFVSLR-GTINHLPKFKHLK 650 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~ 650 (720)
+.+++++|+++.++ ..+.++++|+.++
T Consensus 300 --~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 --RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred --CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 45555555555554 2455555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-11 Score=113.61 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred hccCCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccCc--CcCCCCCCCEEeccCcccccCCcc---ccC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVSGTVIRQPVPS---IFF 565 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~L~~n~l~~~~~~---~~~ 565 (720)
++.+++|++|++++|.+ ..+|..+ +.+++|++|++++|.+ +.+|. .+..+++|++|++++|.+...+.. .+.
T Consensus 60 l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred cccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 44455555555555542 2333332 4455555555555432 33443 444555555555555555444432 122
Q ss_pred CcCCceEEEeecC
Q 047161 566 PSRILKVYLFVDT 578 (720)
Q Consensus 566 ~~~~L~~L~l~~~ 578 (720)
.+++|+.|+++.|
T Consensus 138 ~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 KVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCSEETTEEC
T ss_pred HCCccceeCCCcC
Confidence 2245555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=130.40 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
++.+++|+.|+|++|. +..+|.. ++.+++|++|+|++|.+. .+| .++++++|++|+|++|.+
T Consensus 459 ~~~l~~L~~L~Ls~N~-------l~~lp~~---------~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNR-------LRALPPA---------LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp GGGGTTCCEEECCSSC-------CCCCCGG---------GGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred ccccccCcEeecCccc-------ccccchh---------hhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCC
Confidence 5677888899998887 5677776 888889999999988854 477 788889999999988876
Q ss_pred Cccc-CcCcCCCCCCCEEeccCcccccCCccccC---CcCCceEEE
Q 047161 533 LENM-PESLGQMESLEELDVSGTVIRQPVPSIFF---PSRILKVYL 574 (720)
Q Consensus 533 l~~l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~ 574 (720)
.+.. |..++.|++|+.|++++|.+.+.|+.... .+++|+.|+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6554 88888889999999999988888775432 246777764
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-10 Score=105.62 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=85.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
..+.+++++|. ++.+|.. + .++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|
T Consensus 10 ~~~~l~~s~n~-------l~~ip~~---------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 10 SGTTVDCSGKS-------LASVPTG---------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp ETTEEECTTSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCCEEEeCCCC-------cCccCcc---------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence 35788888876 6778876 3 3788999999998766667888899999999999987655444
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 582 (720)
..|..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..
T Consensus 72 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 557889999999999999999888777666899999998776543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-10 Score=104.91 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE- 538 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~- 538 (720)
+.+++++|. +..+|.. + .++|++|+|++|.+.+..|..++++++|++|+|++|.+.+ +|.
T Consensus 15 ~~l~~~~n~-------l~~iP~~---------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIR-------LASVPAG---------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTG 75 (174)
T ss_dssp SEEECCSSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred cEEEeCCCC-------CCccCCC---------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChh
Confidence 677888776 5777776 3 2788888888888666667788888888888888886544 554
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 582 (720)
.|.++++|++|+|++|.+.++++..+..+++|+.|++.+|.+..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 46788888888888888888888766666888888887776543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-12 Score=142.44 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=121.9
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhc-cCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIE-LLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~-~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~ 531 (720)
.+++|++|+|++|. +... .+..+. .+++|++|+|++|...+. ++..+.++++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~-------~~~~--------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-------VTDD--------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCB-------CCHH--------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcE-------EcHH--------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 56777777777764 1111 111132 577888888888743333 44444567888888888876
Q ss_pred CCcc----cCcCcCCCCCCCEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 532 KLEN----MPESLGQMESLEELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 532 ~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+.+. ++.....+++|++|++++|. .... ..+...+++|+.|++.+|......+..+..+..++.+.+....
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 3322 33333466788888888775 1111 1122224778888887662211122233334444444432221
Q ss_pred c------ccccCCCCCCCCCCCcc-------------------cccEEECCCCCCcc--ccccccCCCCCceeecccccc
Q 047161 604 S------MALMLPSLSGLCSLTEL-------------------NLKKLNLRRNNFVS--LRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 604 ~------~~~~~~~l~~l~~L~~L-------------------~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~ 656 (720)
. .....+.+.++++|+.| +|+.|+|++|.+.. ++..+.++++|++|++++|-.
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 326 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC
Confidence 0 00000012222222222 45788888888652 334457888999999988832
Q ss_pred ccccCCc---ccccceEeeec--------Ccccccch--hhccCchhHhhhhhhcccchh
Q 047161 657 LRSLSEL---PSDIKKVRVHG--------CTSLATIS--DALRSCNSATSRIFCINCPKL 703 (720)
Q Consensus 657 L~~lp~l---p~~L~~L~l~~--------c~~L~~lp--~~~~~~~~L~~l~~~~nc~~l 703 (720)
-..++.+ .++|+.|++.+ |..+.... ....+|++|+.|.. +|..+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~--~~~~l 384 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY--FCRQM 384 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE--EESCC
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH--hcCCc
Confidence 1222221 25689998854 34443321 22234777777633 45544
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-12 Score=117.05 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=35.9
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+.|.||..|+..+
T Consensus 38 g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~a 89 (146)
T 3ub2_A 38 SLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQA 89 (146)
T ss_dssp ---------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHH
T ss_pred CeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998776
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-09 Score=99.49 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=88.6
Q ss_pred CcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeec
Q 047161 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD 577 (720)
Q Consensus 498 L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 577 (720)
-+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..|+++++|++|+|++|.+.++++..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4789999988 688998875 8999999999987777788899999999999999999999998876669999999987
Q ss_pred CCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc
Q 047161 578 TRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG 638 (720)
Q Consensus 578 ~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~ 638 (720)
|.+..+++. .+..+++| +.|+|++|.+...|.
T Consensus 91 N~l~~l~~~------------------------~~~~l~~L-----~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRG------------------------AFDNLKSL-----THIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTT------------------------TTTTCTTC-----SEEECCSSCBCTTBG
T ss_pred CccceeCHH------------------------HhccccCC-----CEEEeCCCCcccccc
Confidence 766554332 24555555 678888998876654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-12 Score=122.14 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+.....++.++++.+.--+..+.++.+|.. ++.+++|++|++++|.+ ..+| .++++++|++|++++|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~---------~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~- 81 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDAT---------LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL- 81 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHH---------HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHH---------HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-
Confidence 444555555555555433333333333332 55566666666666553 3355 55556666666666653
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
+..+|..+..+++|++|++++|.+.++
T Consensus 82 l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 82 IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred cccccchhhcCCcCCEEECcCCcCCcC
Confidence 234555555555566666666655553
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-09 Score=98.63 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
..+.+++++|. +..+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|.+.++++..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999998 677998774 899999999998777768889999999999999999999999887777999999998
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL 636 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l 636 (720)
+|.+..+++.. +..+++| +.|+|++|.+...
T Consensus 87 ~N~l~~~~~~~------------------------~~~l~~L-----~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGA------------------------FDNLKSL-----THIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTT------------------------TTTCTTC-----CEEECCSSCBCTT
T ss_pred CCccCEeCHHH------------------------hcCCCCC-----CEEEeCCCCCCCC
Confidence 87766543322 4455555 6788888877643
|
| >1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-10 Score=105.28 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=50.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.+.++|.+||++|++.|||+|++|+.|.||+.|+..+
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a 85 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFS 85 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCS
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHH
Confidence 7999999989999999999999999999999999999999999999999887
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-08 Score=104.54 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|.+|++|+.+++++|. +..++... |. ..+|+.+.+..+ +...-+..|.++++|+.+++..+
T Consensus 176 F~~c~~L~~l~l~~n~-------l~~I~~~a--------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-- 236 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-------ITKLPAST--------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-- 236 (401)
T ss_dssp TTTCTTCCEEECTTSC-------CSEECTTT--------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--
T ss_pred hhCcccCCeeecCCCc-------ceEechhh--------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--
Confidence 6666667777766654 45666553 33 456666666643 22223345566666777766653
Q ss_pred CcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC-----CCCCCcccccccccccccCCCCccc
Q 047161 533 LENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH-----RTSSSSWHLWFPFSLMQKGSSDSMA 606 (720)
Q Consensus 533 l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~~l~l~~~~~~~ 606 (720)
+..++ ..|.+ .+|+.+.+ .+.+..+....+..+++|+.+.+.++... .+....|.++..|+.+.+. ++...
T Consensus 237 l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~ 313 (401)
T 4fdw_A 237 VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI 313 (401)
T ss_dssp CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE
T ss_pred ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE
Confidence 33343 23444 56666666 33455565666666666777666555443 3455555555555555554 22333
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeecccc
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c 654 (720)
.....|.++++| +.+.|..+ ++.++ ..+.++ +|+.+++.++
T Consensus 314 I~~~aF~~c~~L-----~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 314 LGQGLLGGNRKV-----TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECTTTTTTCCSC-----CEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred EhhhhhcCCCCc-----cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 333335555554 34444332 44443 344555 5666666555
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-12 Score=122.03 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=87.0
Q ss_pred hccCCCCcEEeccCCCCCcccCC------CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPS------TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~------~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+.....++.++++++.+.+..|. .++++++|++|++++|.+. .+| .+.++++|++|++++|.+..+|....
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~- 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDA- 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhh-
Confidence 34455555555555555555554 5666666666666666433 355 56666666666666666665544322
Q ss_pred CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC-CCCCCCCCCCcccccEEECCCCCCcccc-c-----
Q 047161 566 PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML-PSLSGLCSLTELNLKKLNLRRNNFVSLR-G----- 638 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~----- 638 (720)
.+++|+.|++++|.+..++ .+..+..++.+++..+....... ..+..+++| +.|++++|.+...+ .
T Consensus 91 ~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L-----~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL-----EDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC-----SEEEECSCHHHHHHHTTTTHH
T ss_pred cCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC-----CEEEecCCccccccccccchH
Confidence 2356666666666666543 35556666666666554433221 234555555 66777888776442 2
Q ss_pred -----cccCCCCCceee
Q 047161 639 -----TINHLPKFKHLK 650 (720)
Q Consensus 639 -----~i~~l~~L~~L~ 650 (720)
.+..+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 267788888887
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.2e-09 Score=108.04 Aligned_cols=94 Identities=10% Similarity=0.142 Sum_probs=54.9
Q ss_pred cccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCc-eeeccccccccccCCcc----
Q 047161 591 WFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFK-HLKLDDCKRLRSLSELP---- 664 (720)
Q Consensus 591 l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~-~L~L~~c~~L~~lp~lp---- 664 (720)
+..++.+++..++........|.++.+| +.++|.+| ++.++ ..+.++++|+ .+++.+ .++.++.-.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L-----~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYL-----LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTC-----CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCC-----CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCC
Confidence 3455555555554444444446666665 55666665 66665 4566777777 777766 455554311
Q ss_pred cccceEeeecCcccccch-hhccCchhHhh
Q 047161 665 SDIKKVRVHGCTSLATIS-DALRSCNSATS 693 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~ 693 (720)
++|+.|++.+ ..++.++ ..|.+|++|+.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred ccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 4566766644 3466666 36667777665
|
| >2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-10 Score=106.32 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=50.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+.|.||+.|+..+
T Consensus 64 g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a 115 (178)
T 2j67_A 64 SILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFA 115 (178)
T ss_dssp CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHT
T ss_pred CeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHH
Confidence 7999999989999999999999999999999999999999999999999776
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=105.40 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=52.0
Q ss_pred hccCCCCcEEeccC-CCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLND-CKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~-n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+..+++|++|+|++ |.+.+..|..|++|++|++|+|++|.+.+..|..|.+|++|++|+|++|.+.++|+..+..+. |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 34455666666664 553333334566666666666666655554455566666666666666666666666555433 6
Q ss_pred eEEEeecCCCC
Q 047161 571 KVYLFVDTRDH 581 (720)
Q Consensus 571 ~~L~l~~~~~~ 581 (720)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666655544
|
| >1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-10 Score=100.42 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=49.1
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcc-cchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYA-YSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya-~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+ .|.||..|+..+
T Consensus 41 g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a 93 (159)
T 1t3g_A 41 GYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETR 93 (159)
T ss_dssp CCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHH
T ss_pred CeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHH
Confidence 7999999988999999999999999999999999999996 999999999654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=99.56 Aligned_cols=209 Identities=15% Similarity=0.197 Sum_probs=151.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|.++ +|+.+.+..+ ++.++... |..+++|+.+++++|. +..+|.......+|+.+.+..+
T Consensus 154 F~~~-~L~~i~lp~~--------l~~I~~~a--------F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-- 213 (401)
T 4fdw_A 154 FFNS-TVQEIVFPST--------LEQLKEDI--------FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-- 213 (401)
T ss_dssp TTTC-CCCEEECCTT--------CCEECSST--------TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--
T ss_pred cCCC-CceEEEeCCC--------ccEehHHH--------hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--
Confidence 5564 6888888752 37777654 7889999999999887 5667766556799999999864
Q ss_pred CcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc-----c
Q 047161 533 LENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM-----A 606 (720)
Q Consensus 533 l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~-----~ 606 (720)
+..++ ..|.++++|+.+++..+ +..+....+.. .+|+.+.+ .+....+....|.++..|+.+.+..+... .
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 44454 56889999999999874 67777777777 88999998 45577778889999999998887655433 2
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccch
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp 682 (720)
.....|.++++| +.+.|. ++++.++ ..+.++++|+.+.|.++ ++.++.-. .+|+.+.+.++. +..++
T Consensus 291 I~~~aF~~c~~L-----~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 291 IHPYCLEGCPKL-----ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp ECTTTTTTCTTC-----CEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCSS-CCBCC
T ss_pred ECHHHhhCCccC-----CeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCCC-Ccccc
Confidence 333458888887 566666 4577776 56788999999999654 55555311 268899888764 34443
Q ss_pred -hhccCch-hHhh
Q 047161 683 -DALRSCN-SATS 693 (720)
Q Consensus 683 -~~~~~~~-~L~~ 693 (720)
..|.+++ ++..
T Consensus 362 ~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 362 EKVWYGFPDDITV 374 (401)
T ss_dssp CSSCCCSCTTCCE
T ss_pred cccccCCCCCccE
Confidence 5566664 4444
|
| >2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-10 Score=101.39 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=49.0
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHH-hccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIE-ESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~-~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||+ +|+.+|||+|++|+.|.||..|+..+
T Consensus 44 g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a 96 (160)
T 2js7_A 44 RLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFA 96 (160)
T ss_dssp CCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHH
Confidence 68999999999999999999999999 69999999999999999999999554
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-07 Score=94.92 Aligned_cols=182 Identities=19% Similarity=0.161 Sum_probs=110.5
Q ss_pred CCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccch-----------------h-------cHHHHHHH
Q 047161 121 PRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEK-----------------D-------GLIALQKQ 176 (720)
Q Consensus 121 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~-----------------~-------~~~~~~~~ 176 (720)
+.+......+|||+.+++++.+.+..+ +++.|+|++|++.|.- . ....+.+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHH
Confidence 344556678999999999999988542 6899999999932211 0 12222333
Q ss_pred HHHhhhh---------------cccc--eeccchhhHHHHHHHHhc-CCeEEEEecCCcHH---------HHHHHhccCC
Q 047161 177 LLSKTLM---------------EIDI--EIRNDFDGIKMIKRELRR-RNVLVVIDDAVHIR---------QLNRLAGKHS 229 (720)
Q Consensus 177 il~~~~~---------------~~~~--~~~~~~~~~~~l~~~l~~-kr~LlVLDdv~~~~---------~~~~l~~~~~ 229 (720)
+...+.. .... ...+..+..+.+.+.... ++++||+||++..+ .+..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 3332110 0000 012233344455554443 49999999997632 2344433222
Q ss_pred CCCCCCeEEEEcCChhhhhhc-----------c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 230 WFGSGSRIIIPTRDEHLLRTL-----------R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 230 ~~~~gsrIivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
. .++.++|+|++...+...+ + ....+++.+|+.+|+.+++....-......+ .+...+++..|+|+
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGI 238 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTC
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCC
Confidence 1 2478899999876542211 1 1247899999999999999764322111111 24567899999999
Q ss_pred chHHHHhhhhc
Q 047161 298 PFALETLGSVL 308 (720)
Q Consensus 298 PLai~~~g~~l 308 (720)
|+++..++..+
T Consensus 239 P~~l~~~~~~~ 249 (350)
T 2qen_A 239 PGWLVVFGVEY 249 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.61 E-value=8.7e-08 Score=100.55 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=80.5
Q ss_pred EEeccCCCCCcccCCCCCCCCCCCEEeccC-CCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecC
Q 047161 500 FLNLNDCKILVRLPSTINGWKSLRTVNLSR-CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 500 ~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 578 (720)
.++.++++.+..+|. ++.+++|++|+|++ |.+.+..|..|+.|++|++|+|++|.+.++++..+..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777723677999 99999999999996 7655544577999999999999999999999988777799999999999
Q ss_pred CCCCCCCCcccccccccccccCCC
Q 047161 579 RDHRTSSSSWHLWFPFSLMQKGSS 602 (720)
Q Consensus 579 ~~~~~~~~~~~~l~~l~~l~l~~~ 602 (720)
.+..+++..|..+. |+.+.+..|
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCC
Confidence 88887766655443 555555444
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-07 Score=99.53 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=104.0
Q ss_pred CCCCccccchhHHHHHHhh-hc---c---CCCeEEEEEecCCCccccc-----------------------------hhc
Q 047161 126 ILDDLVEMNSRLKKLRLLL-DA---E---SRDVRMIGICGMGGVELSE-----------------------------KDG 169 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L-~~---~---~~~~~vi~I~G~gGi~vs~-----------------------------~~~ 169 (720)
.+..++||+.+++++...+ .. + ....-+|+|+|++|++.+. ..+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3477999999999999888 42 1 2334445559999992221 112
Q ss_pred HHHHHHHHHHhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH--------HHHHHhccCCCC---C--C
Q 047161 170 LIALQKQLLSKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR--------QLNRLAGKHSWF---G--S 233 (720)
Q Consensus 170 ~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~--------~~~~l~~~~~~~---~--~ 233 (720)
...+...++.++ +.... ...+.......+.+.+. +++++||+||++... .+..+...+... + .
T Consensus 100 ~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 100 LYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 334444444442 11100 01122334555666664 689999999998743 344433333211 1 2
Q ss_pred CCeEEEEcCChhhhhhcc---------ccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC-----
Q 047161 234 GSRIIIPTRDEHLLRTLR---------VDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD----- 295 (720)
Q Consensus 234 gsrIivTTR~~~v~~~~~---------~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~----- 295 (720)
.-.||+||+...+...+. ....+++++++.++++++|...+ |.. ... .+....+++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTS
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccC
Confidence 334888888665432211 12238999999999999997653 432 122 345678888999
Q ss_pred -CCchHHHHhh
Q 047161 296 -GLPFALETLG 305 (720)
Q Consensus 296 -glPLai~~~g 305 (720)
|.|..+..+.
T Consensus 256 ~G~p~~~~~l~ 266 (412)
T 1w5s_A 256 DGSARRAIVAL 266 (412)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 9997655443
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=96.66 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=104.1
Q ss_pred CCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccc-------------------h------hcHHHHHH
Q 047161 121 PRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSE-------------------K------DGLIALQK 175 (720)
Q Consensus 121 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~-------------------~------~~~~~~~~ 175 (720)
+.+......+|||+.+++.+.. +.. +++.|+|++|++.|. . .+...+..
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHH
Confidence 3444566789999999999998 742 689999999992111 0 01122222
Q ss_pred HHHHhh-------------hhcc-c-------ceecc---chhhHHHHHHHHhc---CCeEEEEecCCcHH-----H-HH
Q 047161 176 QLLSKT-------------LMEI-D-------IEIRN---DFDGIKMIKRELRR---RNVLVVIDDAVHIR-----Q-LN 222 (720)
Q Consensus 176 ~il~~~-------------~~~~-~-------~~~~~---~~~~~~~l~~~l~~---kr~LlVLDdv~~~~-----~-~~ 222 (720)
.+...+ +... . ..... .......+.+.+.. ++++||+||++..+ + +.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 222211 0000 0 00000 01123334444432 48999999997632 2 22
Q ss_pred HHhccCCCCCCCCeEEEEcCChhhhhhc-----------c-ccceEecCCCCHHHHHHHHHHHhcC-CCCCchHHHHHHH
Q 047161 223 RLAGKHSWFGSGSRIIIPTRDEHLLRTL-----------R-VDGVYKVEKLDDDEALELFNKRAFD-GQPSKDYVELIKR 289 (720)
Q Consensus 223 ~l~~~~~~~~~gsrIivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~s~~Lf~~~af~-~~~~~~~~~~~~~ 289 (720)
.+..... ..++.++|+|+|.......+ + ....+++.+|+.+|+.+++...+-. ....... ..
T Consensus 160 ~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~ 234 (357)
T 2fna_A 160 ALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EV 234 (357)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HH
T ss_pred HHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HH
Confidence 2322211 12467899999987542211 1 1257899999999999999874321 1122222 78
Q ss_pred HHHHhCCCchHHHHhhhhcc
Q 047161 290 IVKYADGLPFALETLGSVLF 309 (720)
Q Consensus 290 i~~~c~glPLai~~~g~~l~ 309 (720)
+++.|+|+|+++..++..+.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHc
Confidence 99999999999999887764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=80.55 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=109.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------- 185 (720)
..+++|++..++.+...+..+. ....+.|+|.+|++.+ .+.+.+...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKT------SIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHH------HHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCC
Confidence 3569999999999998885432 2347889999999443 33334433321100
Q ss_pred -c-ceec-cchhhHHHHHHHHh--------cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-
Q 047161 186 -D-IEIR-NDFDGIKMIKRELR--------RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL- 250 (720)
Q Consensus 186 -~-~~~~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~- 250 (720)
. .... ........++..+. +++.+||+||++. ...++.+...+.....+.++|+||+..... ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0 0000 11122233343332 4679999999975 456777776665556678899988765422 111
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhh
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSV 307 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 307 (720)
.-...+++++++.++..+++.+.+......-+ .+....++++|+|.|..+..+...
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11257899999999999999987754311111 244678999999999988776543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-09 Score=108.63 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhcc-CCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL-LTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~-l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~ 532 (720)
-+++|+.|+|++|. +.... ...+...+.. .++|+.|+|++|.+...-...+ ..+++|++|+|++|.+
T Consensus 70 ~~~~L~~L~Ls~n~-------l~~~~----~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-------MTPVK----CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HHTTCCEEECTTSC-------CCHHH----HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HHhhCCEEEecCCC-------CCHHH----HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 36788999998877 23221 1122222332 3689999999987543322222 3466888999998865
Q ss_pred CcccCcCc-----CCCCCCCEEeccCcccccCCc----cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 533 LENMPESL-----GQMESLEELDVSGTVIRQPVP----SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 533 l~~lp~~~-----~~L~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
...-...+ ...++|++|+|++|.+..... ......++|+.|++++|.+.......+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L--------------- 203 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL--------------- 203 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH---------------
Confidence 44322222 346788999999988765221 111223778888887665432100000
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCcc-----ccccccCCCCCceeeccccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVS-----LRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 655 (720)
...+...++| +.|+|++|.++. ++..+...++|++|+|++|+
T Consensus 204 -----~~~L~~~~~L-----~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 -----AAQLDRNRQL-----QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -----HHHGGGCSCC-----CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred -----HHHHhcCCCc-----CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 0012233333 788889998873 34455667889999999985
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-08 Score=104.93 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=44.2
Q ss_pred CCCCcEEeccCCCCCcccCCCC-----CCCCCCCEEeccCCCCCc----ccCcCcCCCCCCCEEeccCcccccCC----c
Q 047161 495 LTGLVFLNLNDCKILVRLPSTI-----NGWKSLRTVNLSRCSKLE----NMPESLGQMESLEELDVSGTVIRQPV----P 561 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~L~~L~L~~~~~l~----~lp~~~~~L~~L~~L~L~~n~l~~~~----~ 561 (720)
+++|+.|+|++|.+...-...+ ...++|++|+|++|.+.. .++..+..+++|++|+|++|.+.... .
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 4466677777666432222222 234566777777665432 23334455666777777776655321 1
Q ss_pred cccCCcCCceEEEeecCCC
Q 047161 562 SIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~ 580 (720)
..+...++|+.|++++|.+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCCcCeEECCCCCC
Confidence 1122225666666655543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.1e-05 Score=81.54 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=11.2
Q ss_pred CCCCCCCceeeecCCC
Q 047161 452 DFTGAPNLEELILDGC 467 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~ 467 (720)
.|.++++|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS 172 (394)
T ss_dssp TTTTCTTCCEEECCTT
T ss_pred hhcccCCCcEEecCCc
Confidence 4677777877777654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0001 Score=78.08 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccchh--------------------------------cHHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSEKD--------------------------------GLIAL 173 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~~~--------------------------------~~~~~ 173 (720)
+.++||+..++++...+.. .....+.+.|+|++|++.+.-. +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999888753 2344568999999999322110 11222
Q ss_pred HHHHHHhhhhcccc-eeccchhhHHHHHHHHhcCCeEEEEecCCcHHH---HHH-HhccCCCCCCCCeEEEEcCChhhhh
Q 047161 174 QKQLLSKTLMEIDI-EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQ---LNR-LAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 174 ~~~il~~~~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
..+++.++.+.... ...........+.+.+..++.+|||||++.... .+. +...+.+. .+.+||+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 22333332111000 001123445566667777777999999987643 222 22222222 6788999998753211
Q ss_pred ----hc--cccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCch-HHHHhhhhc--c-C-
Q 047161 249 ----TL--RVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPF-ALETLGSVL--F-G- 310 (720)
Q Consensus 249 ----~~--~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l--~-~- 310 (720)
.. .....+++++++.++..+++...+ |.. ...+ +....++++|+ |.|. |+..+.... . +
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 112389999999999999999874 433 2232 33456677777 8876 433332222 1 1
Q ss_pred --CCHHHHHHHHhhh
Q 047161 311 --RSVDGWRSTLERL 323 (720)
Q Consensus 311 --k~~~~W~~~l~~l 323 (720)
-+.+.++.++++.
T Consensus 256 ~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 256 GIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 3677787777654
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.2e-05 Score=73.98 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=104.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-----ccchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-----RNDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-----~~~~~~~~ 197 (720)
..+++|++..++.+..++... ....+.|+|..|++. ..+.+.+...+... ..... ........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------T~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGK------TATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSH------HHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCH------HHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence 457999999999999988643 233388999999943 34444444432111 11111 11122233
Q ss_pred HHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-cccceEecCCCCHHHHH
Q 047161 198 MIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL-RVDGVYKVEKLDDDEAL 267 (720)
Q Consensus 198 ~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~~s~ 267 (720)
.+..... +++.+||+||++.. ..++.+...+.....+.++|+||+..... ... .--..+++.+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 3444332 57889999999864 44556665555556678899998765321 111 11137899999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 268 ELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 268 ~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+++.+.+......-+ .+....+++.++|.|..+..+
T Consensus 168 ~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 168 KRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 999887643211111 244567889999999865543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.5e-05 Score=78.32 Aligned_cols=193 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchh-----------------------------cHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKD-----------------------------GLIALQK 175 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~-----------------------------~~~~~~~ 175 (720)
++.++||+..++++..++... ....+.+.|+|++|++.+.-. +...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 478999999999999988532 345667889999999332211 1112222
Q ss_pred HHHHhhhhcccceeccchhhHHHHHHHH--hcCCeEEEEecCCcHHH-------HHHHhccCCCC--CCCCeEEEEcCCh
Q 047161 176 QLLSKTLMEIDIEIRNDFDGIKMIKREL--RRRNVLVVIDDAVHIRQ-------LNRLAGKHSWF--GSGSRIIIPTRDE 244 (720)
Q Consensus 176 ~il~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gsrIivTTR~~ 244 (720)
.++.++............+....+.+.+ .+++.+|||||++.... +..+....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 2333210000000011223345555566 34688999999987542 22222222211 4466788888765
Q ss_pred hh--------hhhccccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCch-HHHHhhhhc
Q 047161 245 HL--------LRTLRVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPF-ALETLGSVL 308 (720)
Q Consensus 245 ~v--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l 308 (720)
.. ...++ ...+.+++++.++..+++...+ +.. ...++ ....++++++ |.|- |+..+....
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 22222 1478999999999999998874 333 22332 3456777777 9993 333332222
Q ss_pred c-----C---CCHHHHHHHHhhh
Q 047161 309 F-----G---RSVDGWRSTLERL 323 (720)
Q Consensus 309 ~-----~---k~~~~W~~~l~~l 323 (720)
. + -+.+.++.++...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH
Confidence 1 2 2566777766543
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.02 E-value=4.4e-05 Score=78.76 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=101.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-----ccchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-----RNDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-----~~~~~~~~ 197 (720)
.++++|++..++.+.+++..+ ....+-|+|.+|++. ..+.+.+...+... ..... ...+...+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGK------TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSH------HHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCH------HHHHHHHHHHhcCCcccCCEEEecCccccChHHHHH
Confidence 356999999999999988543 333388999999843 33344444332110 00111 11122222
Q ss_pred HHHHHH-------hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-cccceEecCCCCHHHH
Q 047161 198 MIKREL-------RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 198 ~l~~~l-------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s 266 (720)
.+.... .+++.++|+||++. ...++.+...+.....+.++|+||+... +.... .-...+++.+++.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 171 (323)
T 1sxj_B 92 QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDV 171 (323)
T ss_dssp HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred HHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHH
Confidence 333333 34588999999986 3445555555544456788888887643 21111 1123799999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH-HHHhh
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA-LETLG 305 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g 305 (720)
.+++...+......-+ .+....+++.|+|.|.. +..+.
T Consensus 172 ~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 172 LKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999887642211111 24457789999999954 44443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=77.10 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=34.8
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 574 (720)
...|+.+.+..+. ...-...+.++.+|+.+.+..+ ....-...+..+..|+.+....+. ++...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccc
Confidence 3455555554332 2222234455566666666543 222223345555556655554432 2223333345555555
Q ss_pred e
Q 047161 575 F 575 (720)
Q Consensus 575 l 575 (720)
+
T Consensus 304 l 304 (394)
T 4fs7_A 304 L 304 (394)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.8e-05 Score=81.38 Aligned_cols=173 Identities=18% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchhc--------------------------HHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKDG--------------------------LIALQKQL 177 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~~--------------------------~~~~~~~i 177 (720)
.++.++||+.+++.+..++... ....+.+.|+|++|++.+.-.. ...+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999988632 3456688999999993332110 01111111
Q ss_pred HHhhhhccc-ceeccchhhHHHHHHHHh--cCCeEEEEecCCcHH------HHHHHhccCCC-CCCCCeEEEEcCChhhh
Q 047161 178 LSKTLMEID-IEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR------QLNRLAGKHSW-FGSGSRIIIPTRDEHLL 247 (720)
Q Consensus 178 l~~~~~~~~-~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gsrIivTTR~~~v~ 247 (720)
+..+ +... ....+..+..+.+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+.....
T Consensus 98 ~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTT-SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 1111 0000 000112233445555554 458999999997643 24444333321 23355678888876543
Q ss_pred hhcc------c-cceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCchHHH
Q 047161 248 RTLR------V-DGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPFALE 302 (720)
Q Consensus 248 ~~~~------~-~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPLai~ 302 (720)
..+. . ...+++++++.++..+++...+ +.. ... .+....++++++ |.|..+.
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 3221 1 1479999999999999998864 322 222 334556666776 9987443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-06 Score=90.66 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCcc-chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPRE-IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~-~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
...+++|+.|.+.+.. . .....+ ...+.+...+..+++|+.|+|++|... .+|. + .+++|++|+|..|.
T Consensus 135 ~~~l~~L~~L~l~~~~-~------e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDID-F------EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCC-T------TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcc-h------hhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC
Confidence 4567899999887643 1 110000 011234445777889999999887422 3444 4 37889999988775
Q ss_pred CCcccCcCc--CCCCCCCEEeccC
Q 047161 532 KLENMPESL--GQMESLEELDVSG 553 (720)
Q Consensus 532 ~l~~lp~~~--~~L~~L~~L~L~~ 553 (720)
+.......+ ..+++|++|+|+.
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CChHHHHHHHHccCCCCcEEEEec
Confidence 433222223 2678888888753
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-06 Score=87.47 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=10.7
Q ss_pred hhccCCcceEEEecc
Q 047161 378 FLKMTNLRLLKIHNL 392 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~ 392 (720)
...+++|+.|.+.++
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 456778888888664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.4e-06 Score=81.34 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=60.6
Q ss_pred hccCCCCcEEeccCCCCCc--ccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC--CCCEEeccCcccccCCc------
Q 047161 492 IELLTGLVFLNLNDCKILV--RLPSTINGWKSLRTVNLSRCSKLENMPESLGQME--SLEELDVSGTVIRQPVP------ 561 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~L~~n~l~~~~~------ 561 (720)
..++++|+.|+|++|.+.+ .+|..++.+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.+..+
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 4678999999999999665 5567777899999999999876543 2344444 89999999999886443
Q ss_pred -cccCCcCCceEEEe
Q 047161 562 -SIFFPSRILKVYLF 575 (720)
Q Consensus 562 -~~~~~~~~L~~L~l 575 (720)
.+...+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23344577877764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00049 Score=72.83 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred CCCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccc------------------------hhcHHHHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSE------------------------KDGLIALQKQLL 178 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~------------------------~~~~~~~~~~il 178 (720)
++.++||+..++++...+.. +....+.+.|+|..|++.+. ..+...+...++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 37799999999999988853 22234588999999992221 111223333333
Q ss_pred Hhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcH--HHHHHHhccCCCCC----CCCeEEEEcCChhhhhh
Q 047161 179 SKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHI--RQLNRLAGKHSWFG----SGSRIIIPTRDEHLLRT 249 (720)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gsrIivTTR~~~v~~~ 249 (720)
..+ +.... .........+.+.+.+. +++.+|||||++.. +....+...+.... .+-.||+||++..+...
T Consensus 96 ~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSL-NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHT-TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHh-CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 332 11000 01122233444555553 56889999999863 44566655543222 36678888887654333
Q ss_pred cc------c-cceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHh---------CCCchHHHH
Q 047161 250 LR------V-DGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYA---------DGLPFALET 303 (720)
Q Consensus 250 ~~------~-~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c---------~glPLai~~ 303 (720)
.. . ...+.+++++.++..+++...+-.. ....--.+....+++++ +|.|-.+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 21 1 1368999999999999998875321 01111134567788888 788754443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00091 Score=68.83 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----cceec-----cchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEIR-----NDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~~-----~~~~~~~ 197 (720)
.++++|++..++.+..++..+ ....+-|+|..|++. ..+.+.+...+.... ..... ..+....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------T~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGK------TTAALALARELFGENWRHNFLELNASDERGINVIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSH------HHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCH------HHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH
Confidence 457999999999999888643 333488999999843 334444444321110 11111 1112222
Q ss_pred HHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhh-hhhc-cccceEecCCCCHHHHH
Q 047161 198 MIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHL-LRTL-RVDGVYKVEKLDDDEAL 267 (720)
Q Consensus 198 ~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~~s~ 267 (720)
.+..... +++.++|+||++.. +.++.+...+.....+.++|+||....- .... .-...+++.+++.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 96 KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 3333322 56889999999863 4566666665555667889988876432 1111 01127899999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 268 ELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 268 ~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+++...+......- -.+....+++.++|.|..+..+
T Consensus 176 ~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 176 KRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHCCCCHHHHHHH
Confidence 99988765431111 1244567888999999866544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=2e-05 Score=74.14 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCCCCCCEEecc
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l~~L~~L~L~ 528 (720)
+...++|++|+|++|..+ .. .....+...+...++|++|+|++|.+.. .+...+...++|++|+|+
T Consensus 32 l~~~~~L~~L~L~~n~~i------~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI------PV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HTTCTTCCEEECTTCTTC------CH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HhcCCCCCEEEecCCCCC------CH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 567789999999998322 11 1122344447778999999999998543 234445566889999999
Q ss_pred CCCCCcc----cCcCcCCCCCCCEEec--cCcccccCC----ccccCCcCCceEEEeecCCC
Q 047161 529 RCSKLEN----MPESLGQMESLEELDV--SGTVIRQPV----PSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 529 ~~~~l~~----lp~~~~~L~~L~~L~L--~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~ 580 (720)
+|.+... +...+...++|++|+| ++|.+...- .......++|+.|++++|.+
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9976542 4566777889999999 888876521 11222237899999876654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.62 E-value=4.4e-05 Score=75.72 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC--CCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK--SLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~--~L~~L~L~~~~ 531 (720)
..+++|+.|+|++|. + ..+..+|.. ++.+++|++|+|++|.+.+ + ..+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l---~~l~~l~~~---------~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-L---YRLDDMSSI---------VQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSC-C---CCCGGGTTH---------HHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCC-C---CCCccchhH---------HhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCc
Confidence 357899999999998 1 222334443 7789999999999999544 3 3355555 99999999999
Q ss_pred CCcccCc-------CcCCCCCCCEEec
Q 047161 532 KLENMPE-------SLGQMESLEELDV 551 (720)
Q Consensus 532 ~l~~lp~-------~~~~L~~L~~L~L 551 (720)
+.+.+|. .+..+++|+.||=
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccccCcchhHHHHHHHHCcccCeECC
Confidence 8877763 3678999999863
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0024 Score=67.75 Aligned_cols=214 Identities=8% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|..+.+|+.+.+..+. ..++... +..+..|+.+.+..+ +..+........+|+.+.+..+ .
T Consensus 133 F~~c~~L~~i~lp~~~--------~~I~~~~--------F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~ 193 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV--------TSVADGM--------FSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-V 193 (394)
T ss_dssp TTTCTTCCEEECCTTC--------CEECTTT--------TTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-C
T ss_pred hhhhccccccccccee--------eeecccc--------eecccccccccccce--eeEeccccccccceeEEEECCc-c
Confidence 5667777777775432 4444433 555667777776654 2333333333456666666553 2
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCC-------------cCCceEEEeecCCCCCCCCCccccccccccccc
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFP-------------SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQK 599 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~-------------~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l 599 (720)
...-...+..+.+|.......+.........+.. ...+..+.+ -+....+....|.+...+..+.+
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEEC
T ss_pred cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEec
Confidence 2223344556666666554433322211111100 011111111 01111223334444444444443
Q ss_pred CCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccccccccCCcc----cccceEeeec
Q 047161 600 GSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHG 674 (720)
Q Consensus 600 ~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~ 674 (720)
... ........|.++.+| +.+.+. +.++.++ ..+.++.+|+.+.|..+ ++.++.-. .+|+.+.+..
T Consensus 273 p~~-~~~I~~~aF~~c~~L-----~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 273 PDS-VVSIGTGAFMNCPAL-----QDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CTT-CCEECTTTTTTCTTC-----CEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT
T ss_pred ccc-cceecCccccccccc-----ccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc
Confidence 321 112222235555555 344443 3455555 34566777777777542 44444311 4566666642
Q ss_pred Ccccccch-hhccCchhHhhhhhh
Q 047161 675 CTSLATIS-DALRSCNSATSRIFC 697 (720)
Q Consensus 675 c~~L~~lp-~~~~~~~~L~~l~~~ 697 (720)
+++.++ ..|.+|++|+.+.+.
T Consensus 344 --sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 344 --SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp --TCCBCCGGGGTTCTTCCEEEES
T ss_pred --ccCEEhHhHhhCCCCCCEEEEC
Confidence 355555 456667777664443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.49 E-value=1.8e-05 Score=72.74 Aligned_cols=85 Identities=14% Similarity=0.299 Sum_probs=63.7
Q ss_pred ccccEEECCCCCCcccc-ccccCCCCCceeeccccccccc-----cCCc---ccccceEeeecCcccccch-hhccCchh
Q 047161 621 LNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRS-----LSEL---PSDIKKVRVHGCTSLATIS-DALRSCNS 690 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~-----lp~l---p~~L~~L~l~~c~~L~~lp-~~~~~~~~ 690 (720)
..|+.||++++.++..- ..+..+++|++|+|++|..++. +..+ .++|++|++++|+.++.-. ..+.+|++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35789999999876321 3567899999999999986543 4444 3579999999999887654 45677899
Q ss_pred HhhhhhhcccchhHHH
Q 047161 691 ATSRIFCINCPKLILN 706 (720)
Q Consensus 691 L~~l~~~~nc~~l~~~ 706 (720)
|+.| ...+||+++..
T Consensus 141 L~~L-~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYL-FLSDLPGVKEK 155 (176)
T ss_dssp CCEE-EEESCTTCCCH
T ss_pred CCEE-ECCCCCCCCch
Confidence 9994 44589987643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0093 Score=62.68 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred chhccCCcceEEEecc
Q 047161 377 AFLKMTNLRLLKIHNL 392 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~ 392 (720)
+|.++.+|+.+.+.++
T Consensus 64 aF~~C~~L~~I~lp~~ 79 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST 79 (379)
T ss_dssp TTTTCTTCCEEEECTT
T ss_pred HhhCCCCCCEEEeCCc
Confidence 7888888888888654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.013 Score=62.09 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=93.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+ +..+....-...+|+.+.+..+ +.......+..+.++.
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccccc
Confidence 5667777777776542 2333345667777777777653 3444433223356777776543 2222333344445666
Q ss_pred EEEeecCCCCCCCCCcccccc-------------cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-
Q 047161 572 VYLFVDTRDHRTSSSSWHLWF-------------PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR- 637 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~-------------~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp- 637 (720)
................+.... .+....+ .+.........|.++..| +.+.+.++ +..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L-----~~i~lp~~-~~~I~~ 281 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYL-----ASVKMPDS-VVSIGT 281 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSC-----CEEECCTT-CCEECT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccc-----cEEecccc-cceecC
Confidence 555433322222111111100 0000000 011111222336667766 55566544 33343
Q ss_pred ccccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccch-hhccCchhHhhhhh
Q 047161 638 GTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATIS-DALRSCNSATSRIF 696 (720)
Q Consensus 638 ~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~ 696 (720)
..+.++++|+.+.+.. .+..++.-. .+|+.+.+.+ .++.++ ..|.+|.+|+.+.+
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 4567788898888853 345554321 4566666643 355555 35666666665443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00024 Score=66.68 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=68.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEec-
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNL- 527 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L- 527 (720)
+...++|++|+|++|. +.. .....+...+...++|++|+|++|.+... +...+...++|++|+|
T Consensus 61 L~~~~~L~~L~Ls~n~-------i~~----~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTR-------SND----PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 129 (185)
T ss_dssp HTTCCSCCEEECTTSC-------CCH----HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred HHhCCCcCEEECcCCC-------CCh----HHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEec
Confidence 4567899999999987 221 11223444477788999999999985432 5567778899999999
Q ss_pred -cCCCCCcc----cCcCcCCCCCCCEEeccCcccc
Q 047161 528 -SRCSKLEN----MPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 528 -~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
++|.+... +...+...++|++|++++|.+.
T Consensus 130 ~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 130 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88876543 3345566789999999999875
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.23 E-value=9.6e-05 Score=67.96 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc-ccCCCCCCC----CCCCEEeccCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV-RLPSTINGW----KSLRTVNLSRC 530 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~-~lp~~i~~l----~~L~~L~L~~~ 530 (720)
-.+|+.||+++|. + +...-.. +..+++|+.|+|++|..++ .--..++.+ ++|++|+|++|
T Consensus 60 ~~~L~~LDLs~~~-I------td~GL~~--------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 60 KYKIQAIDATDSC-I------MSIGFDH--------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCCEEEEEEESCC-C------CGGGGGG--------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CceEeEEeCcCCC-c------cHHHHHH--------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 3467888888876 2 2211110 5567788888888876332 111223333 36788888887
Q ss_pred CCCccc-CcCcCCCCCCCEEeccCcc
Q 047161 531 SKLENM-PESLGQMESLEELDVSGTV 555 (720)
Q Consensus 531 ~~l~~l-p~~~~~L~~L~~L~L~~n~ 555 (720)
..++.- -..+.++++|++|++++|.
T Consensus 125 ~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 125 GNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 644321 1235567777777777774
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=60.26 Aligned_cols=173 Identities=16% Similarity=0.074 Sum_probs=100.8
Q ss_pred CCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-cchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-NDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~l~~ 201 (720)
..+++||++..++.+...+.. .......|-|+|..|++.+ .+.+.+.... ........ ........+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~i~~~~-~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKT------TLAHVIAHEL-GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCH------HHHHHHHHHH-TCCEEEECTTTCCSHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHH------HHHHHHHHHh-CCCEEEEeccccCChHHHHH
Confidence 346799999999998887752 1223456789999999444 4444444442 21111110 11112334555
Q ss_pred HHhc---CCeEEEEecCCcH--HHHHHHhccCCCC------------------CCCCeEEEEcCChhhh-hhc--cccce
Q 047161 202 ELRR---RNVLVVIDDAVHI--RQLNRLAGKHSWF------------------GSGSRIIIPTRDEHLL-RTL--RVDGV 255 (720)
Q Consensus 202 ~l~~---kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gsrIivTTR~~~v~-~~~--~~~~~ 255 (720)
.+.+ +..+|+|||+... ...+.+...+... .++.++|.||...... ... .....
T Consensus 83 ~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~ 162 (324)
T 1hqc_A 83 ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIV 162 (324)
T ss_dssp HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCE
T ss_pred HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEE
Confidence 5544 6789999999763 2333333222111 0235677766643221 111 22357
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 256 YKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 256 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
+.+.+++.+|..+++.+.+......- -.+....++++++|.|-.+..+..
T Consensus 163 i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 163 EHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHH
Confidence 89999999999999988775431111 124567888999999987766543
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.037 Score=56.26 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=102.8
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----ccee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~-----~~~~~~~ 196 (720)
..++++|++..++.+.+.+..+ ....+-|+|..|++. ..+.+.+...+.... .... ...+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGK------TATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSH------HHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCH------HHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH
Confidence 3456999999999999888543 333478999999843 333444443321100 0011 1112222
Q ss_pred HHHHHHH------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-cccceEecCCCCHHHH
Q 047161 197 KMIKREL------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s 266 (720)
+.+.... .+++-++|+||++.. +..+.+...+.....+.++|+||.... +.... .--..+++.+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 87 HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (319)
T ss_dssp HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHH
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHH
Confidence 3333332 256889999999753 456777777766667788888886543 22111 1123789999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+++...+-.....-+ .+....+++.++|.+..+..
T Consensus 167 ~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 167 KKRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHHHHHHTTCCCBC-HHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 9998877654311111 23456677888998876543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.037 Score=55.42 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=93.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc-----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec---
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE-----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--- 190 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--- 190 (720)
...++++|++..++++.+.+... ....+-+-|+|..|+ +...+.+.+...+ ........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~Gt------GKT~la~~la~~~-~~~~~~v~~~~ 86 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGT------GKTLLAKAVATET-NATFIRVVGSE 86 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSS------SHHHHHHHHHHHT-TCEEEEEEGGG
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCC------cHHHHHHHHHHHh-CCCEEEEehHH
Confidence 34567999999999998877421 133455889999999 4445555555542 21111110
Q ss_pred ----cchhhHHHH----HHHHhcCCeEEEEecCCcH----------------HHHHHHhccCCC--CCCCCeEEEEcCCh
Q 047161 191 ----NDFDGIKMI----KRELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSW--FGSGSRIIIPTRDE 244 (720)
Q Consensus 191 ----~~~~~~~~l----~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gsrIivTTR~~ 244 (720)
........+ ......+..+|++||++.. ..+..+...+.. ...+..||.||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 001111222 2223456689999999764 113333332221 23456788888754
Q ss_pred hhhh-----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC
Q 047161 245 HLLR-----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 245 ~v~~-----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl 297 (720)
+... ....+..+.++..+.++..+++..++... ....++ ..+++.+.|.
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 3322 22345589999999999999999887554 223334 3455566663
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.038 Score=57.70 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=100.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------- 185 (720)
.+++||++..++.+...+..+. ....+-|+|..|++. ..+.+.+...+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GK------T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGK------TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSH------HHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCH------HHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCC
Confidence 3569999999999988885432 223677999999943 333333333321100
Q ss_pred -c-ceec----cchhhHHHHHHHHh-----cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-
Q 047161 186 -D-IEIR----NDFDGIKMIKRELR-----RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL- 250 (720)
Q Consensus 186 -~-~~~~----~~~~~~~~l~~~l~-----~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~- 250 (720)
+ .... ...+....+.+.+. +++.++|+||++. ...++.+...+.....+..+|++|.... +....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 0 0000 00112233333332 5678999999975 3446666655554445677777776433 22211
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhh
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
.-...+++.+++.++..+++.+.+-.....-+ .+....+++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~-~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHCCCCHHHHHHHH
Confidence 11247899999999999998876532111111 2345678899999998776543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.17 Score=52.39 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHhhhhccCCCccCCCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHH
Q 047161 103 HEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIA 172 (720)
Q Consensus 103 ~e~~~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~ 172 (720)
.+...++.+..++..+.++ ...++++|.+..++.+.+.+.. .....+-|-|+|..|+ +...
T Consensus 62 ~~~~~~~~i~~~i~~~~~~---~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGt------GKT~ 132 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHGPP---VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGT------GKTL 132 (357)
T ss_dssp SCHHHHHHHHHHTBCCSCC---CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTS------SHHH
T ss_pred CChHHHHHHHhhcccCCCC---CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCC------CHHH
Confidence 4556677777777555433 3346799999999999877642 1123456889999998 4445
Q ss_pred HHHHHHHhhhhcccceec--c-----chhhHHHHHH---HH-hcCCeEEEEecCCcH-------------HHHHHHhccC
Q 047161 173 LQKQLLSKTLMEIDIEIR--N-----DFDGIKMIKR---EL-RRRNVLVVIDDAVHI-------------RQLNRLAGKH 228 (720)
Q Consensus 173 ~~~~il~~~~~~~~~~~~--~-----~~~~~~~l~~---~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~ 228 (720)
+.+.+.... +....... + .......++. .. ..+..+|+||+++.. .....+...+
T Consensus 133 la~aia~~~-~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l 211 (357)
T 3d8b_A 133 IGKCIASQS-GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL 211 (357)
T ss_dssp HHHHHHHHT-TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHH
Confidence 555555542 21111110 0 0111122222 22 356789999999543 1122333222
Q ss_pred C----CCCCCCeEEEEcCChhhh-hh--ccccceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCC-ch
Q 047161 229 S----WFGSGSRIIIPTRDEHLL-RT--LRVDGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGL-PF 299 (720)
Q Consensus 229 ~----~~~~gsrIivTTR~~~v~-~~--~~~~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~gl-PL 299 (720)
. ....+-.||.||...... .. -.....+.+...+.++..+++...+-.. .... .+....+++.+.|. +-
T Consensus 212 ~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~ 289 (357)
T 3d8b_A 212 DGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGA 289 (357)
T ss_dssp HC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHH
T ss_pred hcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHH
Confidence 2 112344566667543221 11 1334577899999999999988776432 1111 23456678888884 44
Q ss_pred HHHHhh
Q 047161 300 ALETLG 305 (720)
Q Consensus 300 ai~~~g 305 (720)
++..+.
T Consensus 290 dl~~l~ 295 (357)
T 3d8b_A 290 DMTQLC 295 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.19 Score=49.68 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=96.5
Q ss_pred CCccccchhHHHHHHh-------hhc-cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccc-------
Q 047161 128 DDLVEMNSRLKKLRLL-------LDA-ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRND------- 192 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~-------L~~-~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~------- 192 (720)
..++|.+..++++... +.. ......-+-|+|..|+ +...+.+.+... .+.........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~Gt------GKT~la~~ia~~-~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHS------GKTALAAKIAEE-SNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTS------SHHHHHHHHHHH-HTCSEEEEECGGGCTTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCC------cHHHHHHHHHHH-hCCCEEEEeCHHHhcCCc
Confidence 4688888877776652 211 2345677889999999 444444444444 22211111111
Q ss_pred -hhhHHHHHHH----HhcCCeEEEEecCCcH------------HHHHHHhccCCC---CCCCCeEEEEcCChhhhhhc--
Q 047161 193 -FDGIKMIKRE----LRRRNVLVVIDDAVHI------------RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLRTL-- 250 (720)
Q Consensus 193 -~~~~~~l~~~----l~~kr~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~~~-- 250 (720)
......++.. ...+..+|++||++.. ...+.+...+.. .+....||.||.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 1111223332 2356789999998754 123333333322 23344577788877554432
Q ss_pred --cccceEecCCCCH-HHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC------chHHHHhhhhccCCCHHHHHHHHh
Q 047161 251 --RVDGVYKVEKLDD-DEALELFNKRAFDGQPSKDYVELIKRIVKYADGL------PFALETLGSVLFGRSVDGWRSTLE 321 (720)
Q Consensus 251 --~~~~~~~l~~L~~-~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl------PLai~~~g~~l~~k~~~~W~~~l~ 321 (720)
.....+++++++. ++-.+++.+.. .. . .+....+++.+.|. +-++..+-..-...+...|+.++.
T Consensus 186 ~~rf~~~i~~p~l~~r~~i~~i~~~~~--~~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 186 LNAFSTTIHVPNIATGEQLLEALELLG--NF-K---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp TTTSSEEEECCCEEEHHHHHHHHHHHT--CS-C---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred hcccceEEcCCCccHHHHHHHHHHhcC--CC-C---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 1245788999988 66666655421 11 1 23456777888774 333333322222233455666665
Q ss_pred hhh
Q 047161 322 RLN 324 (720)
Q Consensus 322 ~l~ 324 (720)
.+.
T Consensus 260 ~l~ 262 (272)
T 1d2n_A 260 LLR 262 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.06 Score=56.35 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=47.5
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++ ..|..+.+|+.+.+.++.+..+....+..+.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 455666666666554 12222344556667777766542 33333 346666777777776666666666666666666
Q ss_pred eEEEe
Q 047161 571 KVYLF 575 (720)
Q Consensus 571 ~~L~l 575 (720)
+.+.+
T Consensus 313 ~~i~l 317 (379)
T 4h09_A 313 SSVTL 317 (379)
T ss_dssp CEEEC
T ss_pred CEEEc
Confidence 66665
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.12 Score=56.60 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhccC---------------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAES---------------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~ 191 (720)
.++++|++..++++.+++.... +..+.+-|+|..|+ +...+.+.+...+ +..-.....
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGt------GKTtla~~la~~l-~~~~i~in~ 110 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI------GKTTAAHLVAQEL-GYDILEQNA 110 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTS------SHHHHHHHHHHHT-TCEEEEECT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCC------CHHHHHHHHHHHc-CCCEEEEeC
Confidence 4679999999999999885310 13468889999999 3444444444442 211111100
Q ss_pred ch-hhHHHHHHH----------------------HhcCCeEEEEecCCcHH-----HHHHHhccCCCCCCCCeEEEEcCC
Q 047161 192 DF-DGIKMIKRE----------------------LRRRNVLVVIDDAVHIR-----QLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 192 ~~-~~~~~l~~~----------------------l~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
.+ .....+... ..+++.+|++|+|+... .+..+...+.. .+.+||++|.+
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 00 000011111 12567899999997531 12333322221 23456666654
Q ss_pred hh---hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC-chHHHHhh
Q 047161 244 EH---LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL-PFALETLG 305 (720)
Q Consensus 244 ~~---v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl-PLai~~~g 305 (720)
.. +.........+++++++.++..+.+.+.+... ...+ +....+++.++|. +-|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 32 22211223478999999999999988776532 2222 2356778889984 45555543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.34 Score=47.45 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCccccchhHHHHHHhhhc--c--------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c---
Q 047161 127 LDDLVEMNSRLKKLRLLLDA--E--------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N--- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~--~--------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~--- 191 (720)
.++++|.+..++.+.+++.. . ....+-|-|+|..|. +...+.+.+...+ ........ +
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~Gt------GKT~la~~la~~~-~~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGC------GKTLLAKAVATEA-QVPFLAMAGAEFVE 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTS------SHHHHHHHHHHHH-TCCEEEEETTTTSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCC------CHHHHHHHHHHHh-CCCEEEechHHHHh
Confidence 45789999988888766531 1 122345779999999 4444455554442 21111110 0
Q ss_pred ------chhhHHHHHHHHhcCCeEEEEecCCcHH-----------------HHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 192 ------DFDGIKMIKRELRRRNVLVVIDDAVHIR-----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 192 ------~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
.......+.........+|++||++... .+..+...+... ..+-.||.||.....
T Consensus 78 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 78 VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADI 157 (262)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhh
Confidence 0111122222233467899999998641 122333322221 234567777765443
Q ss_pred hhh-c----cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 247 LRT-L----RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 247 ~~~-~----~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
... . ..+..+.++..+.++-.+++..++-..............+++.+.|.+-
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 211 1 3446788999999999999988764432222222234677788888754
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.45 Score=48.90 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=95.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-----cccee--c---cchhhH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-----IDIEI--R---NDFDGI 196 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-----~~~~~--~---~~~~~~ 196 (720)
..+++|.+..++.+...+..+. ...+.|+|..|++.+ .+.+.+...+... .-... . ......
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT------~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKT------STILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHH------HHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHH------HHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 4679999999999998885432 223789999998433 3333333332110 00111 1 111111
Q ss_pred HHHHHHHh----------------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc-ccceE
Q 047161 197 KMIKRELR----------------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR-VDGVY 256 (720)
Q Consensus 197 ~~l~~~l~----------------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~~ 256 (720)
+.+..... +++-+|++|+++.. ...+.+...+.......++|++|.... +..... --..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11222211 24458999998753 334555544443445667777775432 222111 11378
Q ss_pred ecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 257 KVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
++.+++.++..+.+...+-.. ..+ .+....+++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999988876433 222 345678889999999765443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.16 Score=52.55 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
++-++|||++... ...+.+...+.....+.++|+||.+. .+..... --..+++++++.++..+.+.+.+-.....-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 4558999999753 23344444443334567788777653 2322211 115789999999999999887764221100
Q ss_pred hHHHHHHHHHHHhCCCchHHHH
Q 047161 282 DYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai~~ 303 (720)
+-.+....+++.++|.+-.+..
T Consensus 214 ~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp CCSHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHH
Confidence 0013456788889998865443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.052 Score=50.20 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------cccceecc-------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------EIDIEIRN------- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------~~~~~~~~------- 191 (720)
.+.++|+++.++++...+.. ...+.+-|+|..|++ ...+.+.+...+.. ....-..+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~G------KT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVG------KTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG 92 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSC------HHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT
T ss_pred ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCC------HHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc
Confidence 45799999999999988854 334457799999994 33444444444211 00000000
Q ss_pred ---chhhHHHHHHHH-----hcCCeEEEEecCCcHH---------H-HHHHhccCCCCCCCCeEEEEcCChhhhhhc---
Q 047161 192 ---DFDGIKMIKREL-----RRRNVLVVIDDAVHIR---------Q-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 192 ---~~~~~~~l~~~l-----~~kr~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--- 250 (720)
.......+++.+ .+++.+||+||++... . .+.+..... ..+-.+|.||.........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~ 170 (195)
T 1jbk_A 93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKD 170 (195)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTC
T ss_pred CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcC
Confidence 011112233322 2567899999997642 0 222222111 2245577777655432111
Q ss_pred -----cccceEecCCCCHHHHHHH
Q 047161 251 -----RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~L 269 (720)
... .+.+++++.++..++
T Consensus 171 ~~l~~r~~-~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 171 AALERRFQ-KVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHTTEE-EEECCCCCHHHHHTT
T ss_pred HHHHHHhc-eeecCCCCHHHHHHH
Confidence 112 578888888887654
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.18 Score=51.41 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHH----HHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMI----KRE 202 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l----~~~ 202 (720)
.++++|.+..++.+.+++..+ ....++-+.|..|. +...+.+.+...+ +..-......+.....+ .+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~------GKT~la~~la~~l-~~~~~~i~~~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGT------GKTTVAKALCHDV-NADMMFVNGSDCKIDFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTS------SHHHHHHHHHHHT-TEEEEEEETTTCCHHHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCC------CHHHHHHHHHHHh-CCCEEEEcccccCHHHHHHHHHHH
Confidence 467999999999999888633 22356778888998 4555555555552 22222222111223333 333
Q ss_pred Hhc-----CCeEEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCChh-----hhhhccccceEecCCCCHHHHHHH
Q 047161 203 LRR-----RNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRDEH-----LLRTLRVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 203 l~~-----kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~-----v~~~~~~~~~~~l~~L~~~~s~~L 269 (720)
... ++-++++||++.. +..+.+...+.....+.++|+||.... +...+ ..+++++++.++-.++
T Consensus 97 ~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEM 173 (324)
T ss_dssp HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHH
T ss_pred HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHH
Confidence 332 6789999999864 344555444433335678888887543 22222 3789999998874333
Q ss_pred H-------HHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 270 F-------NKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 270 f-------~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
+ .+.+......-.-.+....+++.++|.+-.
T Consensus 174 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 2 222211111110024556778888887653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.054 Score=52.35 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=85.5
Q ss_pred CCCCccccc---hhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhHHHHHH
Q 047161 126 ILDDLVEMN---SRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~---~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~~~l~~ 201 (720)
..++++|.+ ..++.+..+... ...+.+.|+|..|+ +...+.+.+...+... ......+..+....+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~------GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKS------GRTHLIHAACARANELERRSFYIPLGIHASISTA 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTS------SHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCC------CHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 335677743 334444444432 24567889999999 4444555555442211 00111111111111111
Q ss_pred HH--hcCCeEEEEecCCcHH--H--HHHHhccCCCC-CCCC-eEEEEcCCh---------hhhhhccccceEecCCCCHH
Q 047161 202 EL--RRRNVLVVIDDAVHIR--Q--LNRLAGKHSWF-GSGS-RIIIPTRDE---------HLLRTLRVDGVYKVEKLDDD 264 (720)
Q Consensus 202 ~l--~~kr~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-rIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ 264 (720)
.+ -.+.-+||+||++... . .+.+...+... ..|. +||+||+.. .+...+.....+++.+++.+
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred HHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 11 1456789999997531 1 22222221110 1232 477777632 22222222368999999999
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 265 EALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 265 ~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
+..+++...+-.. ... .+....+++.++|.+-.+..
T Consensus 178 ~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp GHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 9999998876422 222 24456778888888766554
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.43 Score=48.80 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=99.1
Q ss_pred CCCCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-cchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-NDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~l~~ 201 (720)
..++++|++..++++..++... ......|-|+|..|+ +...+.+.+... ......... ........+..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~Gt------GKT~la~~ia~~-~~~~~~~~~~~~~~~~~~~~~ 99 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGL------GKTTLANIISYE-MSANIKTTAAPMIEKSGDLAA 99 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTS------SHHHHHHHHHHH-TTCCEEEEEGGGCCSHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCC------CHHHHHHHHHHH-hCCCeEEecchhccchhHHHH
Confidence 3467999999999998888532 334556789999999 444555555554 222211111 11123344444
Q ss_pred HHh--cCCeEEEEecCCcH--HHHHHHhccCCCC------------------CCCCeEEEEcCChhhhh-h--ccccceE
Q 047161 202 ELR--RRNVLVVIDDAVHI--RQLNRLAGKHSWF------------------GSGSRIIIPTRDEHLLR-T--LRVDGVY 256 (720)
Q Consensus 202 ~l~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gsrIivTTR~~~v~~-~--~~~~~~~ 256 (720)
.+. .+..+|+||+++.. ...+.+...+... .++-++|.+|....... . -..+..+
T Consensus 100 ~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i 179 (338)
T 3pfi_A 100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQF 179 (338)
T ss_dssp HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred HHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEe
Confidence 443 46789999999854 3333333322211 11245666665433211 1 1234589
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 257 KVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+.+++.++..+++.+.+-.... .--.+....+++.+.|.|-.+..
T Consensus 180 ~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 180 RLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHH
T ss_pred eCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999877643211 11134456677788998854443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.088 Score=45.64 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=24.8
Q ss_pred EEeccCCCCCc--ccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCccc
Q 047161 500 FLNLNDCKILV--RLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 500 ~L~Ls~n~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l 556 (720)
.++-+++. +. .+|..+ -++|++|+|++|.+. .+| ..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 34444444 23 455432 234555555555432 233 3345555555555555543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.15 E-value=1.3 Score=44.89 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=89.7
Q ss_pred CCCCccccchhHHHHHHhhh----------ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLD----------AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~----------~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.-++++|.+..++.+.+.+. ......+-|-++|..|. +...+.+.+... .........
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGt------GKT~la~aia~~-~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT------GKSYLAKAVATE-ANSTFFSVSSSDLV 88 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSS------CHHHHHHHHHHH-HTCEEEEEEHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCC------cHHHHHHHHHHH-HCCCEEEEchHHHh
Confidence 34679999999999987762 11112345789999999 444444555444 221111110
Q ss_pred -----cchhhHHHHHHHH-hcCCeEEEEecCCcHH-------------HHHHHhccCC---CCCCCCeEEEEcCChhhhh
Q 047161 191 -----NDFDGIKMIKREL-RRRNVLVVIDDAVHIR-------------QLNRLAGKHS---WFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 191 -----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~~~~gsrIivTTR~~~v~~ 248 (720)
........+.... ..+..+|++|+++... ....+...+. ....+..||.||.......
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 1111122222222 3466899999998431 1222222222 2334566776776543321
Q ss_pred h---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 249 T---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 249 ~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
. -..+..+.+...+.++-.+++..++......-. ......+++++.|.
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~ 219 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCC
Confidence 1 134567889999999999999987755421111 12235667777764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.62 Score=46.87 Aligned_cols=139 Identities=10% Similarity=0.058 Sum_probs=81.6
Q ss_pred CccccchhHHHHHHhhhcc-------------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc------cccee
Q 047161 129 DLVEMNSRLKKLRLLLDAE-------------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME------IDIEI 189 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~-------------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~------~~~~~ 189 (720)
+++|.+..++.|.+++..- ......|-|+|..|++ ...+.+.+...+... .....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtG------KT~la~~la~~l~~~~~~~~~~~~~~ 105 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTG------KTTVALKMAGLLHRLGYVRKGHLVSV 105 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSS------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCC------HHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 4789998888887665311 2344567899999994 344444444332110 00000
Q ss_pred --cc-----chhhHHHHHHHHh-cCCeEEEEecCC-----------cHHHHHHHhccCCCCCCCCeEEEEcCChh-----
Q 047161 190 --RN-----DFDGIKMIKRELR-RRNVLVVIDDAV-----------HIRQLNRLAGKHSWFGSGSRIIIPTRDEH----- 245 (720)
Q Consensus 190 --~~-----~~~~~~~l~~~l~-~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gsrIivTTR~~~----- 245 (720)
.+ .......+...+. .+.-+|++|+++ .......+...+.....+.+||.||....
T Consensus 106 ~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~ 185 (309)
T 3syl_A 106 TRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185 (309)
T ss_dssp CGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHH
T ss_pred cHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHH
Confidence 00 0111222333332 245699999998 44445556555554556678888886433
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
+... ....+.+++++.++-.+++..++-
T Consensus 186 ~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 186 QSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 2222 346889999999999999887764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.89 Score=48.42 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCeEEEEecCCcH----HHHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHH
Q 047161 206 RNVLVVIDDAVHI----RQLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFN 271 (720)
Q Consensus 206 kr~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~ 271 (720)
+.-+|++||++.. ..-+.+...+.. ...|..||+||... .+...+....++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 6779999999642 122233322211 13577899988752 233334333578999999999999998
Q ss_pred HHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHhhh------hccC--CCHHHHHHHHhhh
Q 047161 272 KRAFDG--QPSKDYVELIKRIVKYADGLPFALETLGS------VLFG--RSVDGWRSTLERL 323 (720)
Q Consensus 272 ~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~------~l~~--k~~~~W~~~l~~l 323 (720)
+.+-.. ..++ +....+++.+.|.+-.+..+-. ...+ -+.+.++.++..+
T Consensus 274 ~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 274 KMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 877422 2222 2345677888887754332211 1122 2566677776643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=4.5 Score=41.50 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
..++++|.+..++.+.+.+.. .....+-|-|+|..|. +...+.+.+...+ .......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGt------GKT~la~ala~~~-~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT------GKSYLAKAVATEA-NSTFFSVSSSDLV 121 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTS------CHHHHHHHHHHHH-TCEEEEEEHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCC------cHHHHHHHHHHHh-CCCEEEeeHHHHh
Confidence 346799999999999876631 0111234779999998 4444445554442 2111111
Q ss_pred ----ccchhhHHHHHHHH-hcCCeEEEEecCCcHH-------------HHHHHhccCC---CCCCCCeEEEEcCChh---
Q 047161 190 ----RNDFDGIKMIKREL-RRRNVLVVIDDAVHIR-------------QLNRLAGKHS---WFGSGSRIIIPTRDEH--- 245 (720)
Q Consensus 190 ----~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~~~~gsrIivTTR~~~--- 245 (720)
.........+.... ..+..+|++|+++... ....+...+. ....+-.||.||....
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 01111122222222 3577899999998531 1222222221 1234556666776442
Q ss_pred --hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 246 --LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 246 --v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
+.+ ..+..+.+...+.++-.+++..++-.....-. ......+++.+.|.
T Consensus 202 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTC
T ss_pred HHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCC
Confidence 222 45567889999999999999887654311111 12345677778774
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.16 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCC
Q 047161 496 TGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l 533 (720)
++|++|+|++|.+ ..+|. .+..+++|++|+|++|...
T Consensus 31 ~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 4689999999984 45554 5678899999999998653
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.96 Score=48.20 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=89.5
Q ss_pred CCCccccchhH---HHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHH
Q 047161 127 LDDLVEMNSRL---KKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKREL 203 (720)
Q Consensus 127 ~~~~vG~~~~~---~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l 203 (720)
.+++||.+..+ ..+...+.. ..+..+-|||..|+ +...+.+.|... .................++..+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGt------GKTtlAr~ia~~-~~~~f~~l~a~~~~~~~ir~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGT------GKTTLAEVIARY-ANADVERISAVTSGVKEIREAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTS------SHHHHHHHHHHH-TTCEEEEEETTTCCHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCC------cHHHHHHHHHHH-hCCCeEEEEeccCCHHHHHHHH
Confidence 46789988777 566666643 34567889999999 444555555554 3322222221112222222222
Q ss_pred --------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChh--hhhhc-cccceEecCCCCHHHHHHH
Q 047161 204 --------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEH--LLRTL-RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 204 --------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~--v~~~~-~~~~~~~l~~L~~~~s~~L 269 (720)
.+++.+|++|+++.. .+.+.+...+.. +. -++| .||.+.. +.... .--.++.+++++.++-.++
T Consensus 96 ~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 96 ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHH
Confidence 357889999999864 334444443332 11 2333 3555542 11111 1123788999999999999
Q ss_pred HHHHhcCC--C---CCc-hHHHHHHHHHHHhCCCchHHH
Q 047161 270 FNKRAFDG--Q---PSK-DYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 270 f~~~af~~--~---~~~-~~~~~~~~i~~~c~glPLai~ 302 (720)
+.+.+-.. . ... --.+....++++++|.+-.+.
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 88876431 0 111 113445667777888765443
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=4.1 Score=42.39 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=91.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec----
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR---- 190 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~---- 190 (720)
...++++|.+..++.+...+... ....+-|-|+|..|+ +...+.+.+... .+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGt------GKT~la~aia~~-~~~~~~~v~~~~l 184 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGN------GKTMLAKAVAAE-SNATFFNISAASL 184 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTS------CHHHHHHHHHHH-TTCEEEEECSCCC
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCC------CHHHHHHHHHHh-hcCcEEEeeHHHh
Confidence 34467999999999998877310 112356789999999 444555555444 221111110
Q ss_pred ------cchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCC----CCCCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHS----WFGSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~----~~~~gsrIivTTR~~~v 246 (720)
........+.... ..+..+|+||+++.. .....+...+. .....-+||.||....-
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 1111122222222 345579999999743 11122222111 11223456666654322
Q ss_pred hhh---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHh
Q 047161 247 LRT---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETL 304 (720)
Q Consensus 247 ~~~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 304 (720)
... -.....+.+...+.++-.+++...+-.....-. .+....+++.+.|..- ++..+
T Consensus 265 l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 265 LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 111 133456889999999999999877644311111 2344678888888654 44443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=1.3 Score=44.75 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCeEEEEecCCcHH----HHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHH
Q 047161 206 RNVLVVIDDAVHIR----QLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFN 271 (720)
Q Consensus 206 kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~ 271 (720)
+.-+|++||+.... ..+.+...+.. ...|.+||+||... .+...+....++++++ +.++-.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 46789999996532 12233222211 13466788887532 2233333335789999 9999999998
Q ss_pred HHhcCC--CCCchHHHHHHHHHHHhCCCch
Q 047161 272 KRAFDG--QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 272 ~~af~~--~~~~~~~~~~~~i~~~c~glPL 299 (720)
+.+... ..+ .+....+++++ |..-
T Consensus 177 ~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 877533 222 23455677777 6553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.55 E-value=5 Score=39.75 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=91.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI----- 189 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~----- 189 (720)
...++++|.+..++.+.+.+... ....+.|.|+|..|. +...+.+.+.... .......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~Gt------GKT~la~~la~~~-~~~~~~i~~~~l 90 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGN------GKTLLARAVATEC-SATFLNISAASL 90 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSS------CHHHHHHHHHHHT-TCEEEEEESTTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCC------CHHHHHHHHHHHh-CCCeEEeeHHHH
Confidence 34467999999999998776321 112456789999999 4444455554442 2111111
Q ss_pred -----ccchhhHHHHHH-HHhcCCeEEEEecCCcH-------------HHHHHHhc---cCCCC--CCCCeEEEEcCChh
Q 047161 190 -----RNDFDGIKMIKR-ELRRRNVLVVIDDAVHI-------------RQLNRLAG---KHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 190 -----~~~~~~~~~l~~-~l~~kr~LlVLDdv~~~-------------~~~~~l~~---~~~~~--~~gsrIivTTR~~~ 245 (720)
.........+.. ....+..+|++|+++.. .....+.. ..+.. +.+-.||.||...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 011111222222 22456789999999653 11111221 12211 23455677776543
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHh
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETL 304 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 304 (720)
+.+ .....+.+...+.++-.+++...+-.....-. .+....+++.+.|.+- ++..+
T Consensus 171 ~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp GBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred hCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 222 23457788888888888888776543211111 2345677888888875 44333
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=92.54 E-value=3.7 Score=42.20 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred eEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-C----------------hhhhhhccccceEecCCCCHHHHHH
Q 047161 208 VLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-D----------------EHLLRTLRVDGVYKVEKLDDDEALE 268 (720)
Q Consensus 208 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~----------------~~v~~~~~~~~~~~l~~L~~~~s~~ 268 (720)
.+|++|+++.. +..+.+...+...... .+|++|. . ..+...+. .+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~---~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL---IVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEE---EEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhcc---EEEecCCCHHHHHH
Confidence 48999999864 4455666555433333 3444442 1 23333332 47999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHhC-CCchHHH
Q 047161 269 LFNKRAFDGQPSKDYVELIKRIVKYAD-GLPFALE 302 (720)
Q Consensus 269 Lf~~~af~~~~~~~~~~~~~~i~~~c~-glPLai~ 302 (720)
++.+.+-.....- -.+....+++++. |.|-.+.
T Consensus 267 il~~~~~~~~~~~-~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCB-CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhcCCCHHHHH
Confidence 9987764331111 1234567788887 7765443
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.36 E-value=5 Score=40.46 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=89.9
Q ss_pred CCCccccchhHHHHHHhhhc---------c-CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA---------E-SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------- 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------- 189 (720)
-++++|.+..++.+.+.+.. + ....+-|-++|..|. +...+.+.+...+........
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGt------GKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT------GKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSS------CHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCc------cHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999988888776531 1 122356889999998 555556666655311111111
Q ss_pred ---ccchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCCC---CCCCCeEEEEcCChhhhh-
Q 047161 190 ---RNDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLR- 248 (720)
Q Consensus 190 ---~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~- 248 (720)
.........+.... ..+..+|++|+++.. .....+...+.. ...+-.||.||.......
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 01112222232222 357789999999754 112222222221 223445665665432211
Q ss_pred h--ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 249 T--LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ~--~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..+..+.+...+.++-.+++..+.-.....-. ......+++.+.|..
T Consensus 165 al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 165 AIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCC
T ss_pred HHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 1 144567889999999999999887643311111 123456777777764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.04 E-value=5.2 Score=39.91 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.++++|.+..++++.+.+.. +-...+.|.|+|..|. +...+.+.+... .........
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~Gt------GKT~la~ala~~-~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC------GKTLLAKAIANE-CQANFISIKGPELL 86 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSS------SHHHHHHHHHHH-TTCEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCc------CHHHHHHHHHHH-hCCCEEEEEhHHHH
Confidence 35699999998888776642 1233456889999998 333444444443 111111110
Q ss_pred ------cchhhHHHHHHHHhcCCeEEEEecCCcHHH----------------HHHHhccCCC--CCCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKRELRRRNVLVVIDDAVHIRQ----------------LNRLAGKHSW--FGSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~----------------~~~l~~~~~~--~~~gsrIivTTR~~~v 246 (720)
........+.........+|++|+++.... ...+...+.. ...+-.||.||...+.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 001112222233345678999999985321 1223222221 1234567777765543
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCch
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPL 299 (720)
... -..+..+.+...+.++-.+++..+.-.. ....++. .+++.+.|.|-
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 221 1345688999999999899887765433 2222333 34445666653
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.88 Score=45.89 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred ccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccc------------------------------hhcHHHHHHHH
Q 047161 130 LVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSE------------------------------KDGLIALQKQL 177 (720)
Q Consensus 130 ~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~------------------------------~~~~~~~~~~i 177 (720)
+.|||+++++|...|.. .......+-|+|..|.+.+. ..+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999999877752 34556677899999982111 01222344455
Q ss_pred HHhhhhcccceeccchhhHHHHHHHH------hcCCeEEEEecCCcH---HHHHHHhccCCCCCCCCe--EEEEcCChhh
Q 047161 178 LSKTLMEIDIEIRNDFDGIKMIKREL------RRRNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSR--IIIPTRDEHL 246 (720)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsr--IivTTR~~~v 246 (720)
.+++.+. .... ......+++.+ +++++++|||+++.. +.+..+..... ...|+ ||.++...+.
T Consensus 102 ~~~L~g~-~~~~---~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 102 WFAISKE-NLCG---DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHSCC-C--C---CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSCC
T ss_pred HHHhcCC-CCCc---hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCccc
Confidence 5553221 1111 11222333332 356789999999864 22322222100 12343 3344544322
Q ss_pred ---------hhhccccceEecCCCCHHHHHHHHHHHh
Q 047161 247 ---------LRTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 247 ---------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
...++. ..+..++.+.+|-.+++.+.+
T Consensus 176 ~~~~L~~~v~SR~~~-~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAHF-TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTTE-EEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCc-eEEEeCCCCHHHHHHHHHHHH
Confidence 222321 368899999999999887765
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=91.90 E-value=4 Score=43.36 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=92.8
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
..++++|.+..++.+.+.+.. .....+-|-++|..|. +...+.+.+...+.........
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGt------GKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT------GKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTS------SHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCC------CHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 446799999999988876521 1123466889999998 4445555555542111111110
Q ss_pred -----cchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCCCC---CCCCeEEEEcCChhhhh
Q 047161 191 -----NDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHSWF---GSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 191 -----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~---~~gsrIivTTR~~~v~~ 248 (720)
........+.... ..+..+|++|+++.. .....+...+... ..+-.||.||.......
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 0111222233332 357789999999854 2234444444332 34556776776543211
Q ss_pred h---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 249 T---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..+..+.+...+.++-.++|..++-.....-. ......+++.+.|..
T Consensus 286 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 337 (444)
T 2zan_A 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCC
T ss_pred HHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 1 134557888999999999999887644311001 123356777787753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=3.5 Score=44.37 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=87.2
Q ss_pred CCccccchhHHHHHHhhhcc-----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec------
Q 047161 128 DDLVEMNSRLKKLRLLLDAE-----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~------ 190 (720)
.+++|.+..++++.+++... ....+-|-|+|..|. +...+.+.+... .+.......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGt------GKT~lAraia~~-~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT------GKTLIARAVANE-TGAFFFLINGPEIMS 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTS------SHHHHHHHHHHH-CSSEEEEEEHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCC------CHHHHHHHHHHH-hCCCEEEEEchHhhh
Confidence 46999999999998877421 233445789999999 444444444443 211111110
Q ss_pred -----cchhhHHHHHHHHhcCCeEEEEecCCcH-------------HHHHHHhccCCC--CCCCCeEEEEcCChhh----
Q 047161 191 -----NDFDGIKMIKRELRRRNVLVVIDDAVHI-------------RQLNRLAGKHSW--FGSGSRIIIPTRDEHL---- 246 (720)
Q Consensus 191 -----~~~~~~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~gsrIivTTR~~~v---- 246 (720)
........+...-.++..+|+||+++.. .....|...+.. ...+-+||.||....-
T Consensus 277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 0011122233333567789999999421 112223322221 1234466667765432
Q ss_pred -hhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC
Q 047161 247 -LRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 -~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl 297 (720)
.+.......+.+...+.++-.+++..++-.. ....++. ++++++.|.
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~----~la~~t~g~ 406 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE----QVANETHGH 406 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHH----HHHHTCTTC
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHH----HHHHHccCC
Confidence 2212345578999999999999998876443 2222333 345556664
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=88.34 E-value=10 Score=38.32 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=63.6
Q ss_pred cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|+++. .+..+.|...+....++..+|++|.+. .+...... -..+++++++.++..+.+.+.+ . ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~-~~ 183 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--T-MS 183 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--C-CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--C-CC
Confidence 5677899999985 344566666665555667777777654 33332211 2378999999999999888765 1 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
.+....+++.++|.|..+..+.
T Consensus 184 ---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 184 ---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHh
Confidence 2334678899999997665543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.03 E-value=10 Score=38.46 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cceec---cchhhHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEIR---NDFDGIKM 198 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~~---~~~~~~~~ 198 (720)
.+++|.+..++.+...+.. +++..+.++|..|.+.+ .+.+.+...+.... ..+.. ..+...+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKT------tla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE--GKLPHLLFYGPPGTGKT------STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT--TCCCCEEEECSSSSSHH------HHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHH------HHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH
Confidence 4578888778888777753 33334889999999443 33444444321110 00111 11112222
Q ss_pred HHHHHh------cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc-ccceEecCCCCHHHHHH
Q 047161 199 IKRELR------RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 199 l~~~l~------~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~~~l~~L~~~~s~~ 268 (720)
+....+ +.+-++|+|+++. .+..+.+...+.......++|++|.... +..... --..+++.+++.++..+
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 222221 2367889999864 3444555444433345667777765432 211111 11368899999999888
Q ss_pred HHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHH
Q 047161 269 LFNKRAFDG--QPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 269 Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.+...+-.. ... .+....+++.++|-+-.+
T Consensus 177 ~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 177 RIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 877655222 222 234567888889987643
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=88.01 E-value=0.51 Score=43.87 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~~ 530 (720)
.-+.|+.|+|++|..+ .+. ....+-..+..-++|+.|+|++|.+... +-+.+..-+.|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~i---------gd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRV---------SKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSS---------CHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCC---------CHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4457777888765322 111 1112333355567788888887774322 1222234466777777777
Q ss_pred CCCcc----cCcCcCCCCCCCEEeccCc
Q 047161 531 SKLEN----MPESLGQMESLEELDVSGT 554 (720)
Q Consensus 531 ~~l~~----lp~~~~~L~~L~~L~L~~n 554 (720)
.+... +-+.+..-+.|++|+|++|
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 54421 2223444455777777654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=87.30 E-value=0.27 Score=45.75 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=59.8
Q ss_pred hHHHHhccCCCCcEEeccCCCCCc-----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccc
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILV-----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
.+...+.+-+.|+.|+|++|+.++ .+-+.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|+.|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344446667899999999862233 2334455678999999999976532 2233445578999999999987
Q ss_pred cCC-----ccccCCcCCceEEEeec
Q 047161 558 QPV-----PSIFFPSRILKVYLFVD 577 (720)
Q Consensus 558 ~~~-----~~~~~~~~~L~~L~l~~ 577 (720)
..- ...... +.|+.|++.+
T Consensus 112 ~~Ga~ala~aL~~N-~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVT-QSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTT-CCCSEEECCC
T ss_pred HHHHHHHHHHHhhC-CceeEEECCC
Confidence 421 112223 6788888854
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.40 E-value=2.5 Score=36.93 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=54.0
Q ss_pred CccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc--ccc-eeccchhhHHHHHHHH-h
Q 047161 129 DLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME--IDI-EIRNDFDGIKMIKREL-R 204 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--~~~-~~~~~~~~~~~l~~~l-~ 204 (720)
++||.+..++++.+.+..-...-.-|-|+|..|. +...+.+.+-...... ... +....... ......+ .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~Gt------GKt~lA~~i~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGT------GRMTGARYLHQFGRNAQGEFVYRELTPDNA-PQLNDFIAL 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTS------SHHHHHHHHHHSSTTTTSCCEEEECCTTTS-SCHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCC------CHHHHHHHHHHhCCccCCCEEEECCCCCcc-hhhhcHHHH
Confidence 5789999999988877532222233569999998 4444444444331110 101 11111110 1111111 2
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
.+.-.|++|+++.. +....+...+.......+||.||..
T Consensus 75 a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 75 AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 24467899999854 3334444433333345677777763
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=84.27 E-value=1.4 Score=43.07 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
..++++|.+..++.+.+.+.. +....+-|-|+|..|. +...+.+.+.... .......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~Gt------GKT~la~~la~~~-~~~~~~v~~~~~~ 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGT------GKTLLAKAVAGEA-HVPFFSMGGSSFI 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCS------SHHHHHHHHHHHH-TCCCCCCCSCTTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCC------cHHHHHHHHHHHh-CCCEEEechHHHH
Confidence 346799999998888776531 1111223679999998 3444444444442 1111100
Q ss_pred -----ccchhhHHHHHHHHhcCCeEEEEecCCcHH-----------------HHHHHhccCCCCC---CCCeEEEEcCCh
Q 047161 190 -----RNDFDGIKMIKRELRRRNVLVVIDDAVHIR-----------------QLNRLAGKHSWFG---SGSRIIIPTRDE 244 (720)
Q Consensus 190 -----~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~~---~gsrIivTTR~~ 244 (720)
.........+......+..+|++||++... ....+...+.... ..-.||.||...
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 000111122233334567899999996531 1222333332211 124567777655
Q ss_pred hhh-----hhccccceEecCCCCHHHHHHHHHHHh
Q 047161 245 HLL-----RTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 245 ~v~-----~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... +.......+.++..+.++-.+++...+
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 422 111334567888888888888887655
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=83.40 E-value=3.7 Score=37.03 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHh
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSK 180 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~ 180 (720)
...++|++..++.+.+.+.. ...+.+-|+|..|++ ...+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~G------KT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVG------KTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGC------HHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCC------HHHHHHHHHHH
Confidence 35699999999999988854 334456799999993 34444444444
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.16 E-value=16 Score=38.46 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
-+++.|.++.+++|.+.+.. +-...+=|-++|.+|. +...+.+.+..+. +..-...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGT------GKTllAkAiA~e~-~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGT------GKTLLARACAAQT-NATFLKLAAPQLV 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTS------SHHHHHHHHHHHH-TCEEEEEEGGGGC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCC------CHHHHHHHHHHHh-CCCEEEEehhhhh
Confidence 36789999999998765421 2233456779999998 4555566666552 2111111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCCCC--CCeEEEEcCChhh
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWFGS--GSRIIIPTRDEHL 246 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~--gsrIivTTR~~~v 246 (720)
....+....++..+ ....++|.+|+++... ....+...+..+.. |-.||.||...+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 11112223333333 3578999999986421 12234444443332 3345667765544
Q ss_pred hh-----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 LR-----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ~~-----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.. .-..+..+++...+.++-.++|..+.-+. ...-++. .+++.+.|+-
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~----~lA~~t~G~s 387 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQ----ELARSTDEFN 387 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHH----HHHHHCSSCC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 32 22467788999999999999998765433 2333443 4556666653
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=82.81 E-value=16 Score=41.74 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------ccee-----------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEI----------- 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~----------- 189 (720)
.+.++|++..++++.+.|... ...-+-|+|..|++ ...+.+.+...+.... ....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtG------KT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~ 256 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVG------KTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG 256 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSS------HHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCC------HHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc
Confidence 357999999999999988543 22335689999994 3344444444321100 0000
Q ss_pred ----ccchhhHHHHHHHHh-cCCeEEEEecCCcH----------HH-HHHHhccCCCCCCCCeEEEEcCChhhhhhc---
Q 047161 190 ----RNDFDGIKMIKRELR-RRNVLVVIDDAVHI----------RQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 190 ----~~~~~~~~~l~~~l~-~kr~LlVLDdv~~~----------~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--- 250 (720)
.........+.+.+. .++.+|++||+... .+ ...+...+. ..+-++|.+|.........
T Consensus 257 ~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d 334 (758)
T 1r6b_X 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_dssp CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCT
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcC
Confidence 011111222223332 35789999999743 22 333443333 2344666666544321111
Q ss_pred -----cccceEecCCCCHHHHHHHHHHHh
Q 047161 251 -----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... .+.+...+.++..+++...+
T Consensus 335 ~aL~~Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 335 RALARRFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp TSSGGGEE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhCce-EEEcCCCCHHHHHHHHHHHH
Confidence 112 68899999999988887644
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.25 E-value=8.8 Score=38.30 Aligned_cols=132 Identities=18% Similarity=0.147 Sum_probs=76.0
Q ss_pred chhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhh--hh--cccceecc---chhhHHHHH---HHH
Q 047161 134 NSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKT--LM--EIDIEIRN---DFDGIKMIK---REL 203 (720)
Q Consensus 134 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~--~~--~~~~~~~~---~~~~~~~l~---~~l 203 (720)
+..++.+.+.+..+. ...+-++|..|... ..+...+.... .. ..+....+ ....++.++ +..
T Consensus 3 ~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GK------tt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~ 74 (305)
T 2gno_A 3 KDQLETLKRIIEKSE--GISILINGEDLSYP------REVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL 74 (305)
T ss_dssp -CHHHHHHHHHHTCS--SEEEEEECSSSSHH------HHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CcEEEEECCCCCCH------HHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH
Confidence 344556666654333 66788999999833 23333333321 10 01111111 122333333 333
Q ss_pred h-----cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccccceEecCCCCHHHHHHHHHHHh
Q 047161 204 R-----RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 204 ~-----~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
. +++-++|+|+++. ....+.|...+....+.+++|++|.+ ..+....... .+++++++.++..+.+.+.+
T Consensus 75 ~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 75 NYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred hhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 2 4566889999985 34566666666555567787776644 3555555555 89999999999999887765
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=3 Score=37.81 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=40.8
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc--ceeccchhhHHHHH------------HHHhcCCeEEEEecCC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID--IEIRNDFDGIKMIK------------RELRRRNVLVVIDDAV 216 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~------------~~l~~kr~LlVLDdv~ 216 (720)
-..+.|+|..|.+ ...+.+.+...+..... .-..+..+....+. +.+. +.-+|||||++
T Consensus 38 g~~~~l~G~~G~G------KTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVG------KTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL-NSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSS------HHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH-TCSEEEEETCS
T ss_pred CCEEEEECCCCCC------HHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc-CCCEEEEeCCC
Confidence 4678999999994 33444444444221111 11112222222222 2222 45689999997
Q ss_pred c--HHHHH--HHhccCCC-CCCCCeEEEEcC
Q 047161 217 H--IRQLN--RLAGKHSW-FGSGSRIIIPTR 242 (720)
Q Consensus 217 ~--~~~~~--~l~~~~~~-~~~gsrIivTTR 242 (720)
. .+.|. .+...+.. ...|..||+||.
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2 22221 22221111 125678888886
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=80.75 E-value=30 Score=33.09 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCCCccccchhHHHHHHhhhc---c-------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c--
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---E-------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N-- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~-------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~-- 191 (720)
..++++|.+..++++.+++.. . ..-.+-|.|+|..|.+ ...+.+.+.... ........ +
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtG------KT~la~~la~~~-~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTG------KTLLAKAIAGEA-KVPFFTISGSDFV 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSC------HHHHHHHHHHHH-TCCEEEECSCSST
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCC------HHHHHHHHHHHc-CCCEEEEeHHHHH
Confidence 446799999888887665421 0 0112347799999994 334444444432 11111110 0
Q ss_pred ---chhhHHHHH----HHHhcCCeEEEEecCCcH----------------HHHHHHhccCCC--CCCCCeEEEEcCChhh
Q 047161 192 ---DFDGIKMIK----RELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSW--FGSGSRIIIPTRDEHL 246 (720)
Q Consensus 192 ---~~~~~~~l~----~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gsrIivTTR~~~v 246 (720)
.......++ ........++++|+++.. .....+...+.. ...+-.||.||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 011112222 222345679999998432 112223222221 1234567777765432
Q ss_pred h-hhc----cccceEecCCCCHHHHHHHHHHHh
Q 047161 247 L-RTL----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 247 ~-~~~----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
. ... ..+..+.+...+.++-.+++..++
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2 111 235578888888888888887665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 720 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 7e-28 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1fyxa_ | 149 | c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H | 2e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d1fyva_ | 161 | c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H | 6e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 111 bits (278), Expect = 7e-28
Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 43/240 (17%)
Query: 140 LRLLLDAESRDVRMIGICGMGGV-------------------------------ELSEKD 168
++ L + D + + G G +
Sbjct: 33 IKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 92
Query: 169 GLIALQKQLLSKTLMEI-----DIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNR 223
+ L+ K+ ++ + + + + R N L V DD V
Sbjct: 93 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--- 149
Query: 224 LAGKHSWFGSGSRIIIPTRDEHLLRTLRVDG-VYKVEKLDDDEALELFNKRAFDGQPSKD 282
R ++ TRD + +V L+ DE + +
Sbjct: 150 ---IRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEK 206
Query: 283 YVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNGL 342
+++ + ++ + G P L ++ + +L + + S+ L
Sbjct: 207 EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSL 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 21/238 (8%)
Query: 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV 510
+ ++ + L I +L ++ + L L+L ++
Sbjct: 40 AEHFSPFRVQHMDLSNSV--------------IEVSTLHGILSQCSKLQNLSLEGLRLSD 85
Query: 511 RLPSTINGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSR 568
+ +T+ +L +NLS CS + L L+EL++S +
Sbjct: 86 PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 145
Query: 569 ILKVYLFVDTRD-HRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN-LKKL 626
+ + ++ + S D ++ +LN L+ L
Sbjct: 146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205
Query: 627 NLRRNNFVSLRG--TINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATIS 682
+L R + + +P K L++ +L L + ++++ C+ TI+
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN-CSHFTTIA 262
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 44.2 bits (103), Expect = 4e-05
Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 20/173 (11%)
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
T L L+LN ++ + T+ +L ++L+ ++ N+ L + L EL +
Sbjct: 219 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELKLGANQ 274
Query: 556 IRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615
I P + D S+ +L + + L ++S +
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY------------LTLYFNNISDI 322
Query: 616 CSLTEL-NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--RLRSLSELPS 665
++ L L++L N + ++ +L L + L L+ L
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTR 374
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.8 bits (102), Expect = 5e-05
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 405 LRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELIL 464
L L +G LK + + + + ++ +I +G L EL L
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL----------APLSGLTKLTELKL 270
Query: 465 DGCK-----RLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGW 519
+ L T+LT L I L L +L L I P ++
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328
Query: 520 KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP 561
L+ + + K+ + SL + ++ L I P
Sbjct: 329 TKLQRLFFANN-KVSD-VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 24/138 (17%)
Query: 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK 468
L + +++ + + + ++ + P+LEEL + K
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295
Query: 469 RLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS 528
L LP L L L + L +P ++L+ +++
Sbjct: 296 -------LIELP------------ALPPRLERLIASFNH-LAEVPELP---QNLKQLHVE 332
Query: 529 RCSKLENMPESLGQMESL 546
L P+ +E L
Sbjct: 333 YN-PLREFPDIPESVEDL 349
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 2e-04
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDEL 49
K+ ++ GK + + +IE+S +V V S N+ S WC EL
Sbjct: 34 PFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYEL 82
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 44/310 (14%), Positives = 84/310 (27%), Gaps = 58/310 (18%)
Query: 375 NTAFLKMTNLRLLKIHNLQL----PAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLEC 430
+ F + NL L + N ++ P L +L L LK LP M
Sbjct: 48 DGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEKM-------- 98
Query: 431 NMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQK 490
+ + + +R F G + + L S
Sbjct: 99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN----PLKSSGIENGAFQG----- 148
Query: 491 LIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELD 550
+ L ++ + D + +P + SL ++L + SL + +L +L
Sbjct: 149 ----MKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201
Query: 551 VSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610
+S I + L ++ L +
Sbjct: 202 LSFNSISAVDNGSLANTPHL----------RELHLNNNKLVK---------------VPG 236
Query: 611 SLSGLCSLTELNLKKLNLRR--NNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIK 668
L+ + + L N+ +N G + + L ++ PS +
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFR 295
Query: 669 KVRVHGCTSL 678
V V L
Sbjct: 296 CVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 26/178 (14%)
Query: 472 NCTS--LTTLPREIATESLQKL--------------IELLTGLVFLNLNDCKILVRLPST 515
C+ L +P+++ L + L L L L + KI P
Sbjct: 16 QCSDLGLEKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 516 INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575
L + LS+ +L+ +PE + + +EL V I + S+F L +
Sbjct: 75 FAPLVKLERLYLSKN-QLKELPEKMPKTL--QELRVHENEITKVRKSVF---NGLNQMIV 128
Query: 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNF 633
V+ + SS + + + +++ + +L +L+L N
Sbjct: 129 VELGTNPLKSSGIE---NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 183
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 6e-04
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52
G++I + GK++ + IE+S S+ V S N+ S WC EL
Sbjct: 39 GMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFA 90
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.1 bits (92), Expect = 6e-04
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 502 NLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG 553
+L + +I LP + K L ++N+S L G ++ + +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYAN 300
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 13/131 (9%)
Query: 523 RTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582
R ++L+ L + L Q+ + LD+S +R P++ + + + ++
Sbjct: 1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 583 TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGT--- 639
++ L ++ ++ L S L LNL+ N+ G
Sbjct: 59 DGVANLPRLQELLL-----CNNRLQQSAAIQPLVSCP--RLVLLNLQGNSLCQEEGIQER 111
Query: 640 -INHLPKFKHL 649
LP +
Sbjct: 112 LAEMLPSVSSI 122
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 29/200 (14%)
Query: 472 NCTS--LTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529
NC LT LP ++ + L+L++ + +T+ + L +NL R
Sbjct: 16 NCDKRNLTALPPDLPKD-----------TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 530 CSKLENMP-------ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582
+ +L + + + + L R
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 583 TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL---------NLKKLNLRRNNF 633
+ + G + +LTEL NL L L+ N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 634 VSLRGTINHLPKFKHLKLDD 653
++ L
Sbjct: 185 YTIPKGFFGSHLLPFAFLHG 204
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.98 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.77 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.76 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.75 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.74 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.73 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.68 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.66 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.66 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.63 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.5 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.48 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.43 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.35 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.26 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.24 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.23 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.2 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.06 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.89 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.84 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.71 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.7 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.44 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.31 | |
| d1fyva_ | 161 | Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ | 98.27 | |
| d1fyxa_ | 149 | Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ | 98.18 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.13 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 97.82 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.71 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.34 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.16 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.36 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.18 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.12 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.46 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.34 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.32 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.15 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.84 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.76 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.64 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.14 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.92 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.64 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.36 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.05 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.43 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.22 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.55 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.5 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.98 E-value=9.9e-33 Score=278.42 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=170.7
Q ss_pred CCCCccccchhHHHHHHhhhc-cCCCeEEEEEecCCCc---------------------------cccchhcHHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA-ESRDVRMIGICGMGGV---------------------------ELSEKDGLIALQKQL 177 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~-~~~~~~vi~I~G~gGi---------------------------~vs~~~~~~~~~~~i 177 (720)
....++||+.++++|+++|.. .+.+.++|+|+||||| +++..++...+...+
T Consensus 18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~ 97 (277)
T d2a5yb3 18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 97 (277)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHH
Confidence 445689999999999998864 5567899999999999 234444444444433
Q ss_pred HHhhh--hcc-cc------eeccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 178 LSKTL--MEI-DI------EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 178 l~~~~--~~~-~~------~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
...+. ... .. ...........+++.+.+||+|+||||||+.++|+.+. ..|||||||||++.|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~v~~ 171 (277)
T d2a5yb3 98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVEISN 171 (277)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHHHHH
Confidence 22211 111 00 11112223445778889999999999999999998764 35899999999999999
Q ss_pred hcccc-ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhcCC
Q 047161 249 TLRVD-GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHS 327 (720)
Q Consensus 249 ~~~~~-~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~~~ 327 (720)
.+... ++|+|++|+.+|||+||+++||.....+..++++++|+++|+|+|||++++|+.|+.++.++|.+..+++....
T Consensus 172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~ 251 (277)
T d2a5yb3 172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRG 251 (277)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHC
T ss_pred hcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCc
Confidence 87654 68999999999999999999998755556789999999999999999999999999999999999988888777
Q ss_pred chhHHHHHHhhhcCCchhhhh
Q 047161 328 ADEILDVLEISFNGLKGRIEI 348 (720)
Q Consensus 328 ~~~il~~L~lSyn~L~~~~~~ 348 (720)
..++..+|.+||++|+.+.-.
T Consensus 252 ~~~v~~il~~sY~~L~~~lk~ 272 (277)
T d2a5yb3 252 LVGVECITPYSYKSLAMALQR 272 (277)
T ss_dssp SSTTCCCSSSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHH
Confidence 788999999999999987533
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.77 E-value=3.9e-19 Score=182.69 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=120.2
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|+++++|++|+|++|. +..++... +..+.+|+++++++|...+.+|.+++++++|+++++++|..
T Consensus 97 i~~L~~L~~L~Ls~N~-------l~~~~~~~--------~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l 161 (313)
T d1ogqa_ 97 IAKLTQLHYLYITHTN-------VSGAIPDF--------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp GGGCTTCSEEEEEEEC-------CEEECCGG--------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccchhhhcccc-------cccccccc--------ccchhhhcccccccccccccCchhhccCcccceeecccccc
Confidence 5666667777776665 34433322 55566677777776666666666666777777777776666
Q ss_pred CcccCcCcCCCCCC-CEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC
Q 047161 533 LENMPESLGQMESL-EELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611 (720)
Q Consensus 533 l~~lp~~~~~L~~L-~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~ 611 (720)
.+.+|..+..+.++ +.+++++|++.+.++..+.. ..+..+++..+...+..+..+..+..+..+.+..+... ..++.
T Consensus 162 ~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~ 239 (313)
T d1ogqa_ 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGK 239 (313)
T ss_dssp EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-CBGGG
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 66666666666554 66666666666665555544 23334666555555555555555556666555554432 22334
Q ss_pred CCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLA 679 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~ 679 (720)
+..+++| +.|+|++|+++ .+|.+++++++|++|+|++|..-..+|++. .+|+.+++.+++.+.
T Consensus 240 ~~~~~~L-----~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 240 VGLSKNL-----NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCCTTC-----CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ccccccc-----ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence 5555544 56666777666 566667677777777777664222455432 345555555544443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1e-17 Score=167.43 Aligned_cols=193 Identities=20% Similarity=0.185 Sum_probs=116.7
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
.++.+++.++++|..+. ..+++|++++|++..+..+ .|.++++|++|+|++|. |+.+|.
T Consensus 14 ~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~--------~f~~l~~L~~L~L~~N~-------l~~l~~----- 72 (266)
T d1p9ag_ 14 EVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLA--------TLMPYTRLTQLNLDRAE-------LTKLQV----- 72 (266)
T ss_dssp EEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGG--------GGTTCTTCCEEECTTSC-------CCEEEC-----
T ss_pred EEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHH--------Hhhcccccccccccccc-------cccccc-----
Confidence 34666667777776542 3445555555554433211 25556666666666654 344443
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
++.+++|++|+|++|. +...|..+.++++|++|++++|...+..+..+..+.++++|++++|.+..+++..+..
T Consensus 73 -----~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~ 146 (266)
T d1p9ag_ 73 -----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (266)
T ss_dssp -----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred -----cccccccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccc
Confidence 3445566666666665 3344555556666666666665544444444555666666666666666655555554
Q ss_pred cCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCC
Q 047161 567 SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKF 646 (720)
Q Consensus 567 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L 646 (720)
+++|+.+++++|+ +.......+..+++| ++|+|++|+++.+|..+..+++|
T Consensus 147 l~~l~~l~l~~N~------------------------l~~~~~~~~~~l~~L-----~~L~Ls~N~L~~lp~~~~~~~~L 197 (266)
T d1p9ag_ 147 TPKLEKLSLANNN------------------------LTELPAGLLNGLENL-----DTLLLQENSLYTIPKGFFGSHLL 197 (266)
T ss_dssp CTTCCEEECTTSC------------------------CSCCCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTTTCCC
T ss_pred cccchhccccccc------------------------ccccCcccccccccc-----ceeecccCCCcccChhHCCCCCC
Confidence 4556666554444 333333346666766 78899999999999888889999
Q ss_pred ceeeccccc
Q 047161 647 KHLKLDDCK 655 (720)
Q Consensus 647 ~~L~L~~c~ 655 (720)
+.|+|++|+
T Consensus 198 ~~L~L~~Np 206 (266)
T d1p9ag_ 198 PFAFLHGNP 206 (266)
T ss_dssp SEEECCSCC
T ss_pred CEEEecCCC
Confidence 999999876
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.7e-17 Score=166.15 Aligned_cols=219 Identities=19% Similarity=0.212 Sum_probs=173.7
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhh
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~ 487 (720)
+..++..++++|..+. ..+++|++++|+++.+.. ..|.++++|++|++++|. +..++...
T Consensus 16 v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~--------~~f~~l~~L~~L~ls~n~-------l~~i~~~~---- 75 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNV-------LARIDAAA---- 75 (284)
T ss_dssp EECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSC-------CCEECTTT----
T ss_pred EEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCH--------HHhhcccccccccccccc-------cccccccc----
Confidence 3455566777776553 456777888777765432 238889999999999887 56666554
Q ss_pred HHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 488 LQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 488 l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
+..+..++.+....+..+..+ |..+.++++|++|++++|......+..+..+++|+.+++++|.++++++..+..
T Consensus 76 ----~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~ 151 (284)
T d1ozna_ 76 ----FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151 (284)
T ss_dssp ----TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ----ccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc
Confidence 666888888887655445555 667889999999999998765555667888999999999999999998888877
Q ss_pred cCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCC
Q 047161 567 SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPK 645 (720)
Q Consensus 567 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~ 645 (720)
+++|+.|++.+|.+..+.+..|.++..+..+.+..+.........|.++++| +.|++++|.+..+| .++.++++
T Consensus 152 ~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L-----~~L~l~~N~i~~~~~~~~~~~~~ 226 (284)
T d1ozna_ 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-----MTLYLFANNLSALPTEALAPLRA 226 (284)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----CEEECCSSCCSCCCHHHHTTCTT
T ss_pred ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc-----ccccccccccccccccccccccc
Confidence 7899999999999988888899999999999998888777666668888876 78899999999876 57789999
Q ss_pred Cceeeccccc
Q 047161 646 FKHLKLDDCK 655 (720)
Q Consensus 646 L~~L~L~~c~ 655 (720)
|++|++++|+
T Consensus 227 L~~L~l~~N~ 236 (284)
T d1ozna_ 227 LQYLRLNDNP 236 (284)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEecCCC
Confidence 9999999876
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.74 E-value=1.7e-18 Score=177.79 Aligned_cols=228 Identities=15% Similarity=0.179 Sum_probs=178.3
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
+.++++++|++|+|++|..+ ...+|.. |+++++|++|+|++|.+.+..|..+..+.+|+++++++|
T Consensus 70 ~~l~~L~~L~~L~Ls~~N~l-----~g~iP~~---------i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N 135 (313)
T d1ogqa_ 70 SSLANLPYLNFLYIGGINNL-----VGPIPPA---------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTE-----ESCCCGG---------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred hHHhcCcccccccccccccc-----ccccccc---------cccccccchhhhccccccccccccccchhhhcccccccc
Confidence 34788999999999985433 1267777 999999999999999988888888999999999999999
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCC-ceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRI-LKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 609 (720)
.....+|..++++++|+++++++|.+.+..|.....+.. ++.+.+..|++.+..+..+..+... .+.+..+.......
T Consensus 136 ~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~ 214 (313)
T d1ogqa_ 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS 214 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG
T ss_pred cccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 989999999999999999999999998765554433344 4889998888888777777665544 35555554444443
Q ss_pred CCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchhhcc
Q 047161 610 PSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 610 ~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
..+..+++| +.+++++|.+...+..+..+++|+.|+|++|+.-..+|. +. ++|++|+++++.--+.+|. +.
T Consensus 215 ~~~~~~~~l-----~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~ 288 (313)
T d1ogqa_ 215 VLFGSDKNT-----QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG 288 (313)
T ss_dssp GGCCTTSCC-----SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST
T ss_pred ccccccccc-----cccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc
Confidence 446666666 788899998887777888999999999999965446764 21 5799999999875558885 57
Q ss_pred CchhHhhhhhhcc
Q 047161 687 SCNSATSRIFCIN 699 (720)
Q Consensus 687 ~~~~L~~l~~~~n 699 (720)
++++|+.+.+.+|
T Consensus 289 ~L~~L~~l~l~~N 301 (313)
T d1ogqa_ 289 NLQRFDVSAYANN 301 (313)
T ss_dssp TGGGSCGGGTCSS
T ss_pred cCCCCCHHHhCCC
Confidence 7888888777655
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=1e-16 Score=163.59 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=158.6
Q ss_pred ccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcc
Q 047161 401 LSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTT 478 (720)
Q Consensus 401 l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~ 478 (720)
++..+++|++++|.++.+|. .| ...+++++++.++.+..+.. ..|..+++|++|++++|. ++.
T Consensus 29 l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~--------~~f~~l~~L~~L~l~~n~-------l~~ 93 (305)
T d1xkua_ 29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------GAFAPLVKLERLYLSKNQ-------LKE 93 (305)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSC-------CSB
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccch--------hhhhCCCccCEecccCCc-------cCc
Confidence 34456666666666666654 23 23455555555555443211 125555666666666654 344
Q ss_pred cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC--cccCcCcCCCCCCCEEeccCccc
Q 047161 479 LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 479 lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~~~~L~~L~~L~L~~n~l 556 (720)
+|... ...|+.|++++|.+....+..+.....+..++...|... ...+..+..+++|+.+++++|.+
T Consensus 94 l~~~~-----------~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l 162 (305)
T d1xkua_ 94 LPEKM-----------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162 (305)
T ss_dssp CCSSC-----------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred Cccch-----------hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence 54431 234555555555533222222344555556665554322 22334567788899999999888
Q ss_pred ccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc
Q 047161 557 RQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL 636 (720)
Q Consensus 557 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l 636 (720)
..++... +++|+.|++.+|......+..+..+..+..+.++.+.........+.++++| ++|+|++|+++.+
T Consensus 163 ~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L-----~~L~L~~N~L~~l 234 (305)
T d1xkua_ 163 TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-----RELHLNNNKLVKV 234 (305)
T ss_dssp CSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----CEEECCSSCCSSC
T ss_pred cccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc-----eeeeccccccccc
Confidence 8776554 2788899998888888888888888888888888777776666667777776 7888999999999
Q ss_pred cccccCCCCCceeeccccccccccCC----------cccccceEeeecCc
Q 047161 637 RGTINHLPKFKHLKLDDCKRLRSLSE----------LPSDIKKVRVHGCT 676 (720)
Q Consensus 637 p~~i~~l~~L~~L~L~~c~~L~~lp~----------lp~~L~~L~l~~c~ 676 (720)
|.++..+++|+.|+|++| .++.++. .+++|+.|++.+++
T Consensus 235 p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 235 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 989999999999999998 4777652 23668899998877
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=5.5e-17 Score=171.24 Aligned_cols=189 Identities=16% Similarity=0.193 Sum_probs=138.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
...+++++.+++++|.+.+..| .+.+++|++|++++|.+ ..+| .+..+++|+.|++++|.+.+.++ .. .+++|+
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~-~~~~L~ 266 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LS-GLTKLT 266 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GT-TCTTCS
T ss_pred cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCccCCCCc-cc-ccccCC
Confidence 6678889999999988554433 45678899999999854 3444 57788999999999999888765 33 348899
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|+++++.+..+.+ +..+..+..+....+.... ++.+..++++ +.|++++|+++.++ .+..+++|++|++
T Consensus 267 ~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l-----~~L~ls~n~l~~l~-~l~~l~~L~~L~L 336 (384)
T d2omza2 267 ELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNL-----TYLTLYFNNISDIS-PVSSLTKLQRLFF 336 (384)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTC-----SEEECCSSCCSCCG-GGGGCTTCCEEEC
T ss_pred EeeccCcccCCCCc--ccccccccccccccccccc--ccccchhccc-----CeEECCCCCCCCCc-ccccCCCCCEEEC
Confidence 99998887766542 5555566666655554332 2234455554 78899999999887 4888999999999
Q ss_pred cccccccccCCcc--cccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
++| .++.++.+. ++|++|++++| .++.++. +.++++|+.|.+..|
T Consensus 337 ~~n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 337 ANN-KVSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CSS-CCCCCGGGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred CCC-CCCCChhHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence 999 566666544 57999999887 5777775 788999988777654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.2e-16 Score=155.54 Aligned_cols=171 Identities=19% Similarity=0.167 Sum_probs=98.0
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
+|++|+|++|.+.+.-+.+|.++++|++|+|++|. +..+|. ++.+++|++|++++|++...++..... ++|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTC-TTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-ccccccccccccccccccccccccccc-ccccccccc
Confidence 45555555554322222344555555555555543 233332 344555555555555555444333322 555555555
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~ 655 (720)
++....+....+..+..+..+.+..+.........+..+++| +.+++++|+++.+| ..+..+++|++|+|++|.
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l-----~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 183 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-----EKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccc-----hhcccccccccccCccccccccccceeecccCC
Confidence 555555444444444455555555444443333345566665 78889999999887 457889999999999984
Q ss_pred cccccCC-c--ccccceEeeecCc
Q 047161 656 RLRSLSE-L--PSDIKKVRVHGCT 676 (720)
Q Consensus 656 ~L~~lp~-l--p~~L~~L~l~~c~ 676 (720)
++++|. + .++|+.|++++++
T Consensus 184 -L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 184 -LYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp -CCCCCTTTTTTCCCSEEECCSCC
T ss_pred -CcccChhHCCCCCCCEEEecCCC
Confidence 777774 2 1568888888754
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=3.3e-16 Score=165.19 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=144.3
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++++.+++++|. +..++. .+..++|+.|++++|.+ ..+| .+..+++|+.|++++|.+
T Consensus 193 ~~~l~~~~~l~l~~n~-------i~~~~~----------~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l 253 (384)
T d2omza2 193 LAKLTNLESLIATNNQ-------ISDITP----------LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQI 253 (384)
T ss_dssp GGGCTTCSEEECCSSC-------CCCCGG----------GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCC
T ss_pred cccccccceeeccCCc-------cCCCCc----------ccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCcc
Confidence 4566777888887765 344433 56678999999999984 4454 678899999999999975
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
.+ ++ .++.+++|++|+++++.+.+.++ ... +..++.+.+..|.+..+. .+..+..+..++++.++..+. +.+
T Consensus 254 ~~-~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l--~~l 325 (384)
T d2omza2 254 SN-LA-PLSGLTKLTELKLGANQISNISP-LAG-LTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI--SPV 325 (384)
T ss_dssp CC-CG-GGTTCTTCSEEECCSSCCCCCGG-GTT-CTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC--GGG
T ss_pred CC-CC-cccccccCCEeeccCcccCCCCc-ccc-cccccccccccccccccc--ccchhcccCeEECCCCCCCCC--ccc
Confidence 54 44 37889999999999999988765 333 378899999888777643 467778888888888776543 336
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGC 675 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c 675 (720)
..+++| +.|++++|+++.+| .+.++++|++|++++| .++.++.+. ++|+.|++++.
T Consensus 326 ~~l~~L-----~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 326 SSLTKL-----QRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp GGCTTC-----CEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred ccCCCC-----CEEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence 677766 78999999999887 6899999999999998 466665443 57888888763
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.66 E-value=1.4e-15 Score=155.12 Aligned_cols=259 Identities=19% Similarity=0.258 Sum_probs=195.1
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
..+.++.+++.++++|..+. ..+++|++++|+++.+..+ .|.++++|++|++++|. +..++...
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~-~~l~~L~Ls~N~i~~l~~~--------~f~~l~~L~~L~l~~n~-------~~~i~~~~ 74 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDG--------DFKNLKNLHTLILINNK-------ISKISPGA 74 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTT--------TTTTCTTCCEEECCSSC-------CCCBCTTT
T ss_pred cCCEEEecCCCCCccCCCCC-CCCCEEECcCCcCCCcChh--------Hhhcccccccccccccc-------ccccchhh
Confidence 45678889999999999874 6789999999988765322 48889999999999988 45664432
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc--CCc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ--PVP 561 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~--~~~ 561 (720)
|.++++|++|++++|+ +..+|..+ ...|..|++.+|......+..+.....+..++...|.... ...
T Consensus 75 --------f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~ 143 (305)
T d1xkua_ 75 --------FAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143 (305)
T ss_dssp --------TTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred --------hhCCCccCEecccCCc-cCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCc
Confidence 8889999999999998 56788764 4689999999986555444456677888889888875433 333
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i 640 (720)
..+..+++|+.+.+.+|.+..++... ..++..+.+..+.........+.+++.+ +.|++++|.+..++ .++
T Consensus 144 ~~~~~l~~L~~l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l-----~~L~~s~n~l~~~~~~~~ 215 (305)
T d1xkua_ 144 GAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNL-----AKLGLSFNSISAVDNGSL 215 (305)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTC-----CEEECCSSCCCEECTTTG
T ss_pred cccccccccCccccccCCccccCccc---CCccCEEECCCCcCCCCChhHhhccccc-----cccccccccccccccccc
Confidence 44445589999999999887765554 3466777777776666555567777776 67889999999874 678
Q ss_pred cCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchhh-------ccCchhHhhhhhhcc
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDA-------LRSCNSATSRIFCIN 699 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~-------~~~~~~L~~l~~~~n 699 (720)
.++++|++|+|++| .++++|. +. ++|+.|+++++ +++.++.. .....+|+.+.+..|
T Consensus 216 ~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N 282 (305)
T d1xkua_ 216 ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN 282 (305)
T ss_dssp GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred cccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence 89999999999999 5777764 32 67999999997 58888742 234567777666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.7e-15 Score=151.18 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=150.5
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
+++++|+|++|. ++.+|... |..+++|++|++++|.+....+..+.+++.++.+....+..+..+
T Consensus 32 ~~~~~L~Ls~N~-------i~~i~~~~--------f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l 96 (284)
T d1ozna_ 32 AASQRIFLHGNR-------ISHVPAAS--------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (284)
T ss_dssp TTCSEEECTTSC-------CCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCEEECcCCc-------CCCCCHHH--------hhccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999987 68888654 788999999999999876666677788899999987766566655
Q ss_pred -CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCC
Q 047161 537 -PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 537 -p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
|..+.++++|++|++++|.+...++..+....+|+.+++.+|.+..+++..|..+..++.+++..++........+.++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l 176 (284)
T d1ozna_ 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (284)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence 5678999999999999999988888777777899999999998888887777777777777777776655555556777
Q ss_pred CCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCC--c--ccccceEeeecC
Q 047161 616 CSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGC 675 (720)
Q Consensus 616 ~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c 675 (720)
++| +.+++++|+++.+ |.++.++++|++|++++|. +..++. + .++|++|++++.
T Consensus 177 ~~L-----~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 177 HSL-----DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp TTC-----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccc-----chhhhhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCC
Confidence 766 6677777777755 5677777778888887774 333331 1 144666666653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.63 E-value=1.1e-14 Score=151.24 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=55.6
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchhHh
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSAT 692 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~ 692 (720)
+|++|+|++|+++.+|.. +++|+.|+|++| .++++|.++++|++|++++|+ ++++|+...++..|+
T Consensus 285 ~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 285 SLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLR 350 (353)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred CCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCccccccCeeE
Confidence 458999999999999964 678999999998 588999999999999999987 889997665555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=4.8e-14 Score=136.74 Aligned_cols=175 Identities=19% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+.+|+.|++.+|. ++.++. +.++++|++|++++|.+.+ ++ .+.++++|+++++++|..
T Consensus 37 ~~~l~~L~~L~l~~~~-------i~~l~~----------l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 37 QADLDGITTLSAFGTG-------VTTIEG----------VQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPL 97 (227)
T ss_dssp HHHHHTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCC
T ss_pred HHHcCCcCEEECCCCC-------CCcchh----------HhcCCCCcEeecCCceeec-cc-cccccccccccccccccc
Confidence 4556788888888886 566643 7788889999999888544 33 277888899998888754
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
+.++ .+..+++|+.++++++...+..+- .. ...+..+.+..+...... .+.....++.+.+.++.... .+.+
T Consensus 98 -~~i~-~l~~l~~L~~l~l~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~--~~~l 169 (227)
T d1h6ua2 98 -KNVS-AIAGLQSIKTLDLTSTQITDVTPL-AG-LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD--LTPL 169 (227)
T ss_dssp -SCCG-GGTTCTTCCEEECTTSCCCCCGGG-TT-CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC--CGGG
T ss_pred -cccc-cccccccccccccccccccccchh-cc-ccchhhhhchhhhhchhh--hhcccccccccccccccccc--chhh
Confidence 4454 477888889998888877665432 22 267777777555443321 23333344444443332211 1123
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS 661 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 661 (720)
+++++| +.|++++|.++.+| .+.++++|++|+|++| .++.++
T Consensus 170 ~~l~~L-----~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~ 211 (227)
T d1h6ua2 170 ANLSKL-----TTLKADDNKISDIS-PLASLPNLIEVHLKNN-QISDVS 211 (227)
T ss_dssp TTCTTC-----CEEECCSSCCCCCG-GGGGCTTCCEEECTTS-CCCBCG
T ss_pred cccccc-----eecccCCCccCCCh-hhcCCCCCCEEECcCC-cCCCCc
Confidence 333333 44445555554444 2444555555555555 244443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.8e-13 Score=134.04 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=109.7
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCC-cc
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKL-EN 535 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l-~~ 535 (720)
++++|+|++|. ++.+|... |.++++|++|++++|.+...+| ..+.++++++++.+..+..+ ..
T Consensus 30 ~l~~L~Ls~n~-------i~~l~~~~--------f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~ 94 (242)
T d1xwdc1 30 NAIELRFVLTK-------LRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 94 (242)
T ss_dssp CCSEEEEESCC-------CCEECTTT--------TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred CCCEEECcCCc-------CCccChhH--------hhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence 55666666655 45555432 5556666666666665444433 24555666666665543323 33
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccc-cCCcCCceEEEeecCCCCCCCCCcccccc-cccccccCCCCcccccCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSI-FFPSRILKVYLFVDTRDHRTSSSSWHLWF-PFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~l~ 613 (720)
.|..+.++++|++|++++|.+...++.. ...+..+..+...++....+....|.++. .+..+.+..+.........+
T Consensus 95 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~- 173 (242)
T d1xwdc1 95 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF- 173 (242)
T ss_dssp CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-
T ss_pred ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-
Confidence 3344566666666666666665443321 11223444444444444444444444433 34444444444332222222
Q ss_pred CCCCCCcccccEEECCCCCCcccccc-ccCCCCCceeeccccccccccCC-cccccceEeeecCcccccchh
Q 047161 614 GLCSLTELNLKKLNLRRNNFVSLRGT-INHLPKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISD 683 (720)
Q Consensus 614 ~l~~L~~L~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~ 683 (720)
...++. +.+.+++|+++.+|.+ +.++++|+.|+|++|+ ++.+|. ...+|..|...++..++.+|.
T Consensus 174 ~~~~l~----~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp~ 240 (242)
T d1xwdc1 174 NGTQLD----ELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT 240 (242)
T ss_dssp TTCCEE----EEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSCC
T ss_pred cchhhh----ccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCCC
Confidence 222221 3345677778888754 5778888888888874 666654 235566666666666666663
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.9e-13 Score=131.57 Aligned_cols=225 Identities=14% Similarity=0.184 Sum_probs=154.2
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..+..++++|..+. .++++|++++|++..+..+ .|.++++|++|++++|... ..++...
T Consensus 11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~--------~f~~l~~L~~L~ls~n~~~------~~i~~~~-- 73 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKG--------AFSGFGDLEKIEISQNDVL------EVIEADV-- 73 (242)
T ss_dssp SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTT--------TTTTCTTCCEEEEESCTTC------CEECSSS--
T ss_pred CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChh--------Hhhccchhhhhhhcccccc------ceeeccc--
Confidence 466777778889997764 5688899998888665322 3889999999999998732 3455433
Q ss_pred hhHHHHhccCCCCcEEeccCC-CCCcccCCCCCCCCCCCEEeccCCCCCcccCc--CcCCCCCCCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDC-KILVRLPSTINGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n-~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+..++.+++|.+.++ .+....|..+.++++|++|++++|.+. ..|. .+..+..+..+...++.+..+++.
T Consensus 74 ------f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~ 146 (242)
T d1xwdc1 74 ------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 146 (242)
T ss_dssp ------EESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTT
T ss_pred ------cccccccccccccccccccccccccccccccccccccchhhhc-cccccccccccccccccccccccccccccc
Confidence 677899999988764 444455566788999999999998654 3332 234455666666677777776655
Q ss_pred ccCC-cCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccccc-c
Q 047161 563 IFFP-SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGT-I 640 (720)
Q Consensus 563 ~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~-i 640 (720)
.+.. ...++.|++.+|.+..+....+........+.+.++.........|.++++| +.|+|++|+++.+|.+ +
T Consensus 147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L-----~~L~Ls~N~l~~l~~~~~ 221 (242)
T d1xwdc1 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP-----VILDISRTRIHSLPSYGL 221 (242)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCC-----SEEECTTSCCCCCCSSSC
T ss_pred ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCC-----CEEECCCCcCCccCHHHH
Confidence 5443 3578889998888888777766654444444555555554444447778876 7888999999988853 4
Q ss_pred cCCCCCceeeccccccccccCC
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
.++++|+.|++. +++.+|.
T Consensus 222 ~~l~~L~~l~~~---~l~~lp~ 240 (242)
T d1xwdc1 222 ENLKKLRARSTY---NLKKLPT 240 (242)
T ss_dssp TTCCEEESSSEE---SSSCSCC
T ss_pred cCCcccccCcCC---CCCcCCC
Confidence 555555555554 4555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=2.7e-13 Score=128.32 Aligned_cols=154 Identities=18% Similarity=0.300 Sum_probs=109.4
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
...++++++|++++|. +..++. +..+++|++|++++|.+. .++. ++++++|++|++++|..
T Consensus 36 ~~~l~~l~~L~l~~~~-------i~~l~~----------l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 36 QTDLDQVTTLQADRLG-------IKSIDG----------VEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHHHTTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCEEECCCCC-------CCCccc----------cccCCCcCcCcccccccc-Cccc-ccCCccccccccccccc
Confidence 3456788899998886 455543 777889999999998754 4443 88899999999998854
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
..+| .++++++|+.|++++|.....++ .. .+++|+.|++++|.+.. ++.+
T Consensus 97 -~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~~--------------------------~~~l 146 (199)
T d2omxa2 97 -ADIT-PLANLTNLTGLTLFNNQITDIDP-LK-NLTNLNRLELSSNTISD--------------------------ISAL 146 (199)
T ss_dssp -CCCG-GGTTCTTCSEEECCSSCCCCCGG-GT-TCTTCSEEECCSSCCCC--------------------------CGGG
T ss_pred -cccc-ccccccccccccccccccccccc-cc-hhhhhHHhhhhhhhhcc--------------------------cccc
Confidence 4454 37888999999998888776543 33 34788888886654332 1224
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
..+++| +.|++++|.++.++ .++++++|++|++++|+ ++.++.
T Consensus 147 ~~~~~L-----~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~~ 189 (199)
T d2omxa2 147 SGLTSL-----QQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDISV 189 (199)
T ss_dssp TTCTTC-----SEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred cccccc-----cccccccccccCCc-cccCCCCCCEEECCCCC-CCCCcc
Confidence 445554 67788888888776 47788888888888884 555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=3.3e-13 Score=128.86 Aligned_cols=164 Identities=18% Similarity=0.290 Sum_probs=106.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
.+.+|+.|++++|. ++.++. +..+++|++|++++|.+ ..++ .++++++|++|++++|. +.
T Consensus 44 ~L~~L~~L~l~~~~-------i~~l~~----------l~~l~~L~~L~L~~n~i-~~l~-~~~~l~~L~~L~l~~n~-i~ 103 (210)
T d1h6ta2 44 ELNSIDQIIANNSD-------IKSVQG----------IQYLPNVTKLFLNGNKL-TDIK-PLANLKNLGWLFLDENK-VK 103 (210)
T ss_dssp HHHTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSSC-CC
T ss_pred HhcCccEEECcCCC-------CCCchh----------HhhCCCCCEEeCCCccc-cCcc-ccccCcccccccccccc-cc
Confidence 35578888888876 444443 67788888888888874 4454 36788888888888875 44
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~ 614 (720)
.+| .+..+++|+.|++++|.+...+ .... ++.++.+.+.+|.+... +.+..
T Consensus 104 ~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~-l~~l~~l~~~~n~l~~~--------------------------~~~~~ 154 (210)
T d1h6ta2 104 DLS-SLKDLKKLKSLSLEHNGISDIN-GLVH-LPQLESLYLGNNKITDI--------------------------TVLSR 154 (210)
T ss_dssp CGG-GGTTCTTCCEEECTTSCCCCCG-GGGG-CTTCCEEECCSSCCCCC--------------------------GGGGG
T ss_pred ccc-cccccccccccccccccccccc-cccc-ccccccccccccccccc--------------------------ccccc
Confidence 565 4778888888888888776543 2333 37777777765543321 11223
Q ss_pred CCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeec
Q 047161 615 LCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHG 674 (720)
Q Consensus 615 l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~ 674 (720)
+++| +.+++++|.++.++. +.++++|+.|++++| .++.+|.+. ++|+.|++++
T Consensus 155 l~~L-----~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 155 LTKL-----DTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTC-----SEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred cccc-----ccccccccccccccc-ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 3433 566777777766653 667777777777777 355555444 4566666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.43 E-value=1.9e-12 Score=133.89 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=52.8
Q ss_pred cccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceE
Q 047161 591 WFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKV 670 (720)
Q Consensus 591 l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L 670 (720)
+.+|+.++++++.+.. +|. .+++| +.|+|++|+++.+|.. +++|++|++++|+ ++++|.+|.+|+.|
T Consensus 283 ~~~L~~L~Ls~N~l~~--lp~--~~~~L-----~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L 349 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLIE--LPA--LPPRL-----ERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDL 349 (353)
T ss_dssp CTTCCEEECCSSCCSC--CCC--CCTTC-----CEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred CCCCCEEECCCCccCc--ccc--ccCCC-----CEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCee
Confidence 3456777776665432 221 24444 7889999999999853 5689999999996 99999999999999
Q ss_pred eee
Q 047161 671 RVH 673 (720)
Q Consensus 671 ~l~ 673 (720)
.+.
T Consensus 350 ~~~ 352 (353)
T d1jl5a_ 350 RMN 352 (353)
T ss_dssp ECC
T ss_pred ECc
Confidence 875
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=8e-13 Score=127.93 Aligned_cols=146 Identities=17% Similarity=0.257 Sum_probs=86.2
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+++++++|. ++.++. +..+++|+++++++|..... ..+...+.++.+.+++|..
T Consensus 81 l~~l~~l~~l~~~~n~-------~~~i~~----------l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 141 (227)
T d1h6ua2 81 LKNLTKITELELSGNP-------LKNVSA----------IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 141 (227)
T ss_dssp GTTCCSCCEEECCSCC-------CSCCGG----------GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred cccccccccccccccc-------cccccc----------cccccccccccccccccccc--chhccccchhhhhchhhhh
Confidence 4556666666666654 233332 45566666666666653322 2244556666666666543
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
... ..+..+++|++|++++|.+...++ + ..+++|+.|++++|++.. ++.+
T Consensus 142 ~~~--~~~~~~~~L~~L~l~~n~~~~~~~-l-~~l~~L~~L~Ls~n~l~~--------------------------l~~l 191 (227)
T d1h6ua2 142 TNI--SPLAGLTNLQYLSIGNAQVSDLTP-L-ANLSKLTTLKADDNKISD--------------------------ISPL 191 (227)
T ss_dssp CCC--GGGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCC--------------------------CGGG
T ss_pred chh--hhhccccccccccccccccccchh-h-cccccceecccCCCccCC--------------------------Chhh
Confidence 322 124555666666666666554332 2 223566666665443222 2235
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 653 (720)
+++++| ++|+|++|+++.+| .++++++|+.|+|++
T Consensus 192 ~~l~~L-----~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 192 ASLPNL-----IEVHLKNNQISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp GGCTTC-----CEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred cCCCCC-----CEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence 566665 78899999999988 488999999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=6.5e-13 Score=126.80 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=124.4
Q ss_pred cCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
.+.+|++|++++|. +..++ .+..+++|++|++++|.+. .+| .++.+++|++|++++|++++++ .... +++|+.|
T Consensus 44 ~L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n~i~-~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L 117 (210)
T d1h6ta2 44 ELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLS-SLKD-LKKLKSL 117 (210)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCCGG-GGTT-CTTCCEE
T ss_pred HhcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCcccc-Ccc-ccccCccccccccccccccccc-cccc-ccccccc
Confidence 46789999999998 44554 4889999999999998654 455 3789999999999999998865 3443 4899999
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccc
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDD 653 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 653 (720)
++.+|.... ++.+..+++| +.+++++|.++.++ .+..+++|+.+++++
T Consensus 118 ~l~~~~~~~--------------------------~~~l~~l~~l-----~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~ 165 (210)
T d1h6ta2 118 SLEHNGISD--------------------------INGLVHLPQL-----ESLYLGNNKITDIT-VLSRLTKLDTLSLED 165 (210)
T ss_dssp ECTTSCCCC--------------------------CGGGGGCTTC-----CEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred ccccccccc--------------------------cccccccccc-----cccccccccccccc-ccccccccccccccc
Confidence 986553322 2224445554 78889999888755 577899999999999
Q ss_pred cccccccCCcc--cccceEeeecCcccccchhhccCchhHhhhhhh
Q 047161 654 CKRLRSLSELP--SDIKKVRVHGCTSLATISDALRSCNSATSRIFC 697 (720)
Q Consensus 654 c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~ 697 (720)
|. +..++.+. ++|+.|++++| .++.+| .+.++++|+.|.++
T Consensus 166 n~-l~~i~~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 166 NQ-ISDIVPLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp SC-CCCCGGGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred cc-ccccccccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence 94 56665433 67999999998 588887 48889999886654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=1e-12 Score=124.29 Aligned_cols=161 Identities=15% Similarity=0.256 Sum_probs=123.1
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
...+.++++|++++|. +..++ .+..+++|++|++++|.+. .++. ++++++|++|++++|.+...++ + ..++.|+
T Consensus 36 ~~~l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~~~~~-l-~~l~~L~ 109 (199)
T d2omxa2 36 QTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT 109 (199)
T ss_dssp HHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCS
T ss_pred HHHhcCCCEEECCCCC-CCCcc-ccccCCCcCcCcccccccc-Cccc-ccCCcccccccccccccccccc-c-ccccccc
Confidence 3457899999999998 45564 5889999999999999654 4543 8999999999999999887664 3 3448999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|+++++.... .+.+..+++| +.|++++|.+..+| .+..+++|+.|++
T Consensus 110 ~L~l~~~~~~~--------------------------~~~~~~l~~L-----~~L~l~~n~l~~~~-~l~~~~~L~~L~l 157 (199)
T d2omxa2 110 GLTLFNNQITD--------------------------IDPLKNLTNL-----NRLELSSNTISDIS-ALSGLTSLQQLNF 157 (199)
T ss_dssp EEECCSSCCCC--------------------------CGGGTTCTTC-----SEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred ccccccccccc--------------------------ccccchhhhh-----HHhhhhhhhhcccc-ccccccccccccc
Confidence 99986554322 1224455555 78899999998876 5888999999999
Q ss_pred cccccccccCCcc--cccceEeeecCcccccchhhccCchhHhh
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALRSCNSATS 693 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~~~~~L~~ 693 (720)
.+| .+..++.+. ++|+.|++++|. ++.+| .+.++++|+.
T Consensus 158 ~~n-~l~~l~~l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~~ 198 (199)
T d2omxa2 158 SSN-QVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLES 198 (199)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSE
T ss_pred ccc-cccCCccccCCCCCCEEECCCCC-CCCCc-cccCCCCCCc
Confidence 998 466665443 679999999984 88876 3667777764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.35 E-value=3.7e-12 Score=119.54 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=80.7
Q ss_pred CCceeeecCCCCCCCCCCCCcc-cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 457 PNLEELILDGCKRLQNCTSLTT-LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~-lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++++|+|++|. +.. ++... |..+++|+.|+|++|.+....+..+..+++|++|+|++|.+...
T Consensus 29 ~~l~~L~Ls~N~-------i~~~~~~~~--------f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l 93 (192)
T d1w8aa_ 29 LHTTELLLNDNE-------LGRISSDGL--------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93 (192)
T ss_dssp TTCSEEECCSCC-------CCSBCCSCS--------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred CCCCEEEeCCCC-------Ccccccccc--------cCCCceEeeeeccccccccccccccccccccceeeecccccccc
Confidence 467778888876 432 33332 67788888888888877666777777788888888888765554
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 582 (720)
.|..|.++++|++|+|++|.++++++..+..+++|++|++.+|.+..
T Consensus 94 ~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 45567788888888888888888887777666788888887665543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.6e-13 Score=134.29 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=125.7
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
...+|++|++++|. +....++..+.++++|++|+|++|.+....+..++.+++|++|++++|..++
T Consensus 44 ~~~~L~~LdLs~~~--------------i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it 109 (284)
T d2astb2 44 SPFRVQHMDLSNSV--------------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 109 (284)
T ss_dssp CCBCCCEEECTTCE--------------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred cCCCCCEEECCCCc--------------cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc
Confidence 45689999999875 1222344447889999999999998777777888899999999999986654
Q ss_pred c--cCcCcCCCCCCCEEeccCcc-ccc--CCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC
Q 047161 535 N--MPESLGQMESLEELDVSGTV-IRQ--PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609 (720)
Q Consensus 535 ~--lp~~~~~L~~L~~L~L~~n~-l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 609 (720)
. +...+..+++|++|++++|. +.. ........+++|+.|++.++... ..+..+
T Consensus 110 d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------i~~~~l 167 (284)
T d2astb2 110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN----------------------LQKSDL 167 (284)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG----------------------SCHHHH
T ss_pred ccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc----------------------cccccc
Confidence 2 23334578999999999874 332 22222333468888888543211 011111
Q ss_pred CC-CCCCCCCCcccccEEECCCCC-Cc-cccccccCCCCCceeecccccccc-----ccCCcccccceEeeecCcccccc
Q 047161 610 PS-LSGLCSLTELNLKKLNLRRNN-FV-SLRGTINHLPKFKHLKLDDCKRLR-----SLSELPSDIKKVRVHGCTSLATI 681 (720)
Q Consensus 610 ~~-l~~l~~L~~L~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L~-----~lp~lp~~L~~L~l~~c~~L~~l 681 (720)
.. ..++++| ++|++++|. ++ ..+..+..+++|++|+|++|..+. .+..+ ++|+.|++.+|..-..+
T Consensus 168 ~~l~~~~~~L-----~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~-~~L~~L~l~~~~~d~~l 241 (284)
T d2astb2 168 STLVRRCPNL-----VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGIVPDGTL 241 (284)
T ss_dssp HHHHHHCTTC-----SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTSSCTTCH
T ss_pred cccccccccc-----cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC-CCCCEEeeeCCCCHHHH
Confidence 11 1234544 667777753 44 344567778888888888886543 23333 35888888888544445
Q ss_pred hhhccCchhHh
Q 047161 682 SDALRSCNSAT 692 (720)
Q Consensus 682 p~~~~~~~~L~ 692 (720)
+.....+++|+
T Consensus 242 ~~l~~~lp~L~ 252 (284)
T d2astb2 242 QLLKEALPHLQ 252 (284)
T ss_dssp HHHHHHSTTSE
T ss_pred HHHHHhCcccc
Confidence 44444555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.5e-12 Score=114.45 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
|.|.++.+|++|+|++|. ++.++.. +..+++|++|+|++|. +..++ .+..+++|++|++++|
T Consensus 12 ~~~~n~~~lr~L~L~~n~-------I~~i~~~---------~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N 73 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYK-------IPVIENL---------GATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNN 73 (162)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSCCCG---------GGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSS
T ss_pred HhccCcCcCcEEECCCCC-------CCccCcc---------ccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccc
Confidence 445566666666666665 4555432 4445666666666665 33443 3555666666666665
Q ss_pred CCCcccCcC-cCCCCCCCEEeccCccccc
Q 047161 531 SKLENMPES-LGQMESLEELDVSGTVIRQ 558 (720)
Q Consensus 531 ~~l~~lp~~-~~~L~~L~~L~L~~n~l~~ 558 (720)
.+. .+|.. +..+++|++|++++|.+..
T Consensus 74 ~i~-~l~~~~~~~l~~L~~L~L~~N~i~~ 101 (162)
T d1a9na_ 74 RIC-RIGEGLDQALPDLTELILTNNSLVE 101 (162)
T ss_dssp CCC-EECSCHHHHCTTCCEEECCSCCCCC
T ss_pred ccc-CCCccccccccccccceeccccccc
Confidence 432 33332 3445566666666655543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=1.1e-11 Score=116.26 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=82.7
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCEEeccCCCCCcccC
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
.++++.+++. ++.+|.. + .+++++|+|++|.+...+ +..+.++++|++|+|++|.+....+
T Consensus 10 ~~~v~Cs~~~-------L~~iP~~---------l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~ 71 (192)
T d1w8aa_ 10 GTTVDCTGRG-------LKEIPRD---------I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TTEEECTTSC-------CSSCCSC---------C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CCEEEEeCCC-------cCccCCC---------C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc
Confidence 4667777665 6777776 3 257888888888865544 4556788888888888887777777
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccc
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWH 589 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 589 (720)
..+..+++|++|++++|++..+++..+..+++|+.|++++|.+..+++..|.
T Consensus 72 ~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~ 123 (192)
T d1w8aa_ 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhc
Confidence 7788888888888888888888887776667777777776666655544443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=8.8e-12 Score=113.08 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCC
Q 047161 418 LPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTG 497 (720)
Q Consensus 418 lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~ 497 (720)
.|......++++|++++|++..+. ..+..+++|++|+|++|. +..++. +..+++
T Consensus 11 ~~~~~n~~~lr~L~L~~n~I~~i~---------~~~~~l~~L~~L~Ls~N~-------i~~l~~----------~~~l~~ 64 (162)
T d1a9na_ 11 AAQYTNAVRDRELDLRGYKIPVIE---------NLGATLDQFDAIDFSDNE-------IRKLDG----------FPLLRR 64 (162)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCC---------CGGGGTTCCSEEECCSSC-------CCEECC----------CCCCSS
T ss_pred hHhccCcCcCcEEECCCCCCCccC---------ccccccccCCEEECCCCC-------CCccCC----------cccCcc
Confidence 344444566777777777776541 113567778888888776 455543 666777
Q ss_pred CcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc---cccCCcCCce
Q 047161 498 LVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP---SIFFPSRILK 571 (720)
Q Consensus 498 L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~---~~~~~~~~L~ 571 (720)
|++|++++|. +..+|.. +..+++|++|++++|.+ ..++ ..+..+++|++|++++|.+...+. ..+..+++|+
T Consensus 65 L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~ 142 (162)
T d1a9na_ 65 LKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 142 (162)
T ss_dssp CCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred hhhhhccccc-ccCCCccccccccccccceeccccc-cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence 8888888777 3445544 34677788888877753 3344 246677778888888777766553 1223335666
Q ss_pred EEE
Q 047161 572 VYL 574 (720)
Q Consensus 572 ~L~ 574 (720)
.|+
T Consensus 143 ~LD 145 (162)
T d1a9na_ 143 VLD 145 (162)
T ss_dssp EET
T ss_pred eeC
Confidence 554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=2.1e-11 Score=105.01 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=52.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L 570 (720)
++.+++|++|++++|. +..+|..++.+++|++|++++|.+ ..+| .++++++|++|++++|.+...+. ..+..+++|
T Consensus 16 l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence 5566667777777666 455666666677777777776643 3444 36666677777777776665543 223334666
Q ss_pred eEEEeecCCCC
Q 047161 571 KVYLFVDTRDH 581 (720)
Q Consensus 571 ~~L~l~~~~~~ 581 (720)
+.|++.+|.+.
T Consensus 93 ~~L~l~~N~i~ 103 (124)
T d1dcea3 93 VLLNLQGNSLC 103 (124)
T ss_dssp CEEECTTSGGG
T ss_pred CEEECCCCcCC
Confidence 66666555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.4e-11 Score=106.26 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
+.+..+++|++|++++|. ++.+|.. ++.+++|++|++++|. +..+| .++++++|++|++++|
T Consensus 14 ~~l~~l~~L~~L~ls~N~-------l~~lp~~---------~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 14 CHLEQLLLVTHLDLSHNR-------LRALPPA---------LAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp CCGGGGTTCCEEECCSSC-------CCCCCGG---------GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS
T ss_pred cccccCCCCCEEECCCCc-------cCcchhh---------hhhhhccccccccccc-ccccC-ccccccccCeEECCCC
Confidence 346788899999999998 6888877 8889999999999998 55676 4899999999999998
Q ss_pred CCCcccC--cCcCCCCCCCEEeccCcccccCC---ccccCCcCCceEE
Q 047161 531 SKLENMP--ESLGQMESLEELDVSGTVIRQPV---PSIFFPSRILKVY 573 (720)
Q Consensus 531 ~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~---~~~~~~~~~L~~L 573 (720)
.+. .+| ..++.+++|++|++++|++...+ ......+++|+.+
T Consensus 76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 644 444 45889999999999999987654 3333334666544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.3e-11 Score=121.55 Aligned_cols=210 Identities=18% Similarity=0.266 Sum_probs=131.2
Q ss_pred CCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcE
Q 047161 421 SMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVF 500 (720)
Q Consensus 421 ~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~ 500 (720)
.+...++++|+++++.+..-... .-+..+++|++|+|++|. +. ...+..++.+++|++
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~-------~l~~~c~~L~~L~L~~~~-------l~--------~~~~~~l~~~~~L~~ 99 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLH-------GILSQCSKLQNLSLEGLR-------LS--------DPIVNTLAKNSNLVR 99 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHH-------HHHTTBCCCSEEECTTCB-------CC--------HHHHHHHTTCTTCSE
T ss_pred hccCCCCCEEECCCCccCHHHHH-------HHHHhCCCcccccccccC-------CC--------cHHHHHHhcCCCCcC
Confidence 34456788888888765432110 015688999999999985 11 112233788999999
Q ss_pred EeccCCCCCcc--cCCCCCCCCCCCEEeccCCCCCcc--cCcCcC-CCCCCCEEeccCcc--ccc-CCccccCCcCCceE
Q 047161 501 LNLNDCKILVR--LPSTINGWKSLRTVNLSRCSKLEN--MPESLG-QMESLEELDVSGTV--IRQ-PVPSIFFPSRILKV 572 (720)
Q Consensus 501 L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~~l~~--lp~~~~-~L~~L~~L~L~~n~--l~~-~~~~~~~~~~~L~~ 572 (720)
|++++|..++. +..-..++++|++|++++|..... ++..+. ..++|+.|+++++. +.. ....+...+++|+.
T Consensus 100 L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~ 179 (284)
T d2astb2 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179 (284)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred ccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccc
Confidence 99999865432 222235689999999999865532 222233 34789999999763 322 12223334578999
Q ss_pred EEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCC-CCc-cccccccCCCCCceee
Q 047161 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRN-NFV-SLRGTINHLPKFKHLK 650 (720)
Q Consensus 573 L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n-~l~-~lp~~i~~l~~L~~L~ 650 (720)
|++++|. ...+..+..+.++++| ++|++++| .++ .-...++++++|+.|+
T Consensus 180 L~L~~~~-----------------------~itd~~~~~l~~~~~L-----~~L~L~~C~~i~~~~l~~L~~~~~L~~L~ 231 (284)
T d2astb2 180 LDLSDSV-----------------------MLKNDCFQEFFQLNYL-----QHLSLSRCYDIIPETLLELGEIPTLKTLQ 231 (284)
T ss_dssp EECTTCT-----------------------TCCGGGGGGGGGCTTC-----CEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ccccccc-----------------------CCCchhhhhhcccCcC-----CEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence 9985442 2222333445566665 67788885 454 2234567889999999
Q ss_pred ccccccccccCCcccccceEeeecCcccccc
Q 047161 651 LDDCKRLRSLSELPSDIKKVRVHGCTSLATI 681 (720)
Q Consensus 651 L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~l 681 (720)
+++|-.-..++.+...+..|.+ +|..+..+
T Consensus 232 l~~~~~d~~l~~l~~~lp~L~i-~~~~ls~~ 261 (284)
T d2astb2 232 VFGIVPDGTLQLLKEALPHLQI-NCSHFTTI 261 (284)
T ss_dssp CTTSSCTTCHHHHHHHSTTSEE-SCCCSCCT
T ss_pred eeCCCCHHHHHHHHHhCccccc-cCccCCCC
Confidence 9998544445444445555666 45555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.8e-09 Score=93.94 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=81.2
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCS 531 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~ 531 (720)
...+.....++.+++. +.+.|.. +..+++|+.|++++|+.+..++ ..|.++++|+.|++++|.
T Consensus 4 ~C~c~~~~~l~c~~~~-------~~~~p~~---------l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~ 67 (156)
T d2ifga3 4 ACCPHGSSGLRCTRDG-------ALDSLHH---------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67 (156)
T ss_dssp SSCCSSSSCEECCSSC-------CCTTTTT---------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC
T ss_pred CCCcCCCCeEEecCCC-------CccCccc---------ccCccccCeeecCCCccccccCchhhccccccCcceeeccc
Confidence 3344455667766655 3455555 6668888888887765455555 467888899999998886
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCC
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 580 (720)
+...-|..|..+++|++|+|++|++..+++..+.. ..|+.|++.+|.+
T Consensus 68 l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~ 115 (156)
T d2ifga3 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL 115 (156)
T ss_dssp CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred cCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCCCcc
Confidence 55544667888889999999999998888888776 5788888877654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.84 E-value=1.3e-11 Score=116.10 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|+|++|. +..++ .++++++|++|++++|. +..+|..+..+++|++|++++|.++.++ .+.. +++|+
T Consensus 44 l~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~-l~~L~ 118 (198)
T d1m9la_ 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEK-LVNLR 118 (198)
T ss_dssp HHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH-HHHSS
T ss_pred HhcccccceeECcccC-CCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccccccc-cccc-ccccc
Confidence 7888888888888887 45565 57788888888888875 4556655555667888888888776542 2222 24555
Q ss_pred EEEeec
Q 047161 572 VYLFVD 577 (720)
Q Consensus 572 ~L~l~~ 577 (720)
.|++++
T Consensus 119 ~L~L~~ 124 (198)
T d1m9la_ 119 VLYMSN 124 (198)
T ss_dssp EEEESE
T ss_pred cccccc
Confidence 555433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.71 E-value=3.1e-11 Score=113.40 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=88.6
Q ss_pred CcEEeccCC-CCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 498 LVFLNLNDC-KILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 498 L~~L~Ls~n-~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
++.+++++. ..+..+|.+++.+++|++|+|++|. +..++ .+..|++|++|++++|.+..+++ ....+++|+.|++.
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWIS 101 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECS
T ss_pred cceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhcccccccccc-cccccccccccccc
Confidence 445555543 1245567778899999999999986 45665 58889999999999999887754 33333678889887
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc--ccccCCCCCceeecccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c 654 (720)
+|.+..+ +.+..+++ |+.|++++|.++.++ ..+..+++|+.|+|++|
T Consensus 102 ~N~i~~l--------------------------~~~~~l~~-----L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 102 YNQIASL--------------------------SGIEKLVN-----LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEECCCH--------------------------HHHHHHHH-----SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred ccccccc--------------------------cccccccc-----ccccccccchhccccccccccCCCccceeecCCC
Confidence 6654331 11223333 378888899888776 46788999999999998
Q ss_pred c
Q 047161 655 K 655 (720)
Q Consensus 655 ~ 655 (720)
+
T Consensus 151 ~ 151 (198)
T d1m9la_ 151 P 151 (198)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.4e-08 Score=87.43 Aligned_cols=90 Identities=28% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+.|+++++..+ +.++... |..+++|+.|+|++|.+...-|..|..+++|++|+|++|.
T Consensus 27 l~~l~~l~~L~l~~n~~l------~~i~~~~--------f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~- 91 (156)
T d2ifga3 27 LPGAENLTELYIENQQHL------QHLELRD--------LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91 (156)
T ss_dssp SCSCSCCSEEECCSCSSC------CEECGGG--------SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred ccCccccCeeecCCCccc------cccCchh--------hccccccCcceeeccccCCcccccccccccccceeccCCC-
Confidence 567889999999877544 7777654 7889999999999999655556778999999999999986
Q ss_pred CcccCcCcCCCCCCCEEeccCcccc
Q 047161 533 LENMPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
+..+|..+....+|++|+|++|.+.
T Consensus 92 l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CcccChhhhccccccccccCCCccc
Confidence 5567766555668999999999875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.45 E-value=1e-08 Score=105.07 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=82.6
Q ss_pred chhccCCcceEEEeccccCC-cc------cCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccc
Q 047161 377 AFLKMTNLRLLKIHNLQLPA-GL------ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIR 449 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~-~~------~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~ 449 (720)
++.+...++.|++++|.+.. ++ ....+.++.+.+.++......... ...+..+.
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~-----------~~~~~~l~-------- 86 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-----------PEALRLLL-------- 86 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS-----------HHHHHHHH--------
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccccc-----------chHHHHHH--------
Confidence 45667888889998887632 11 111234666666655443322110 00000110
Q ss_pred cCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC----C---------CC
Q 047161 450 TPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP----S---------TI 516 (720)
Q Consensus 450 ~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp----~---------~i 516 (720)
..+..+++|+.|+|++|. +.. .....+...+...++|+.|++++|.+...-. . ..
T Consensus 87 -~~l~~~~~L~~L~L~~n~-------i~~----~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~ 154 (344)
T d2ca6a1 87 -QALLKCPKLHTVRLSDNA-------FGP----TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 154 (344)
T ss_dssp -HHHTTCTTCCEEECCSCC-------CCT----TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhCCCcccccccccc-------ccc----ccccchhhhhcccccchheeccccccccccccccccccccccccccc
Confidence 114456677777777764 111 0111222335556677777777765321100 0 01
Q ss_pred CCCCCCCEEeccCCCCCc----ccCcCcCCCCCCCEEeccCcccccC-----CccccCCcCCceEEEeecCC
Q 047161 517 NGWKSLRTVNLSRCSKLE----NMPESLGQMESLEELDVSGTVIRQP-----VPSIFFPSRILKVYLFVDTR 579 (720)
Q Consensus 517 ~~l~~L~~L~L~~~~~l~----~lp~~~~~L~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~~~ 579 (720)
...+.|+.+.+++|.+.. .+...+...++|++|++++|.+... ........++|+.|++++|.
T Consensus 155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~ 226 (344)
T d2ca6a1 155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 226 (344)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred ccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence 234566777776664332 1222344556677777777665431 11122223566666665443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.44 E-value=2.3e-08 Score=102.37 Aligned_cols=240 Identities=18% Similarity=0.160 Sum_probs=130.8
Q ss_pred CcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc--hhhhHHHHhccCCCCcEEe
Q 047161 425 DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI--ATESLQKLIELLTGLVFLN 502 (720)
Q Consensus 425 ~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~--~~~~l~~~i~~l~~L~~L~ 502 (720)
..+.++++++|.+..-.. ..+ ...+...++|+.|++++|.. ....... ....+...+...++|+.|+
T Consensus 31 ~~l~~L~Ls~n~i~~~~~--~~l--~~~l~~~~~L~~l~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 99 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAA--RWL--SENIASKKDLEIAEFSDIFT-------GRVKDEIPEALRLLLQALLKCPKLHTVR 99 (344)
T ss_dssp SCCCEEECTTSEECHHHH--HHH--HHTTTTCTTCCEEECCSCCT-------TSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCHHHH--HHH--HHHHHhCCCCCEEECCCCcc-------cccccccchHHHHHHHHHhhCCCccccc
Confidence 345566666665532110 000 01256778889999988751 1111111 1223444577788999999
Q ss_pred ccCCCCCcc----cCCCCCCCCCCCEEeccCCCCCcccC-------------cCcCCCCCCCEEeccCcccccCCc----
Q 047161 503 LNDCKILVR----LPSTINGWKSLRTVNLSRCSKLENMP-------------ESLGQMESLEELDVSGTVIRQPVP---- 561 (720)
Q Consensus 503 Ls~n~~~~~----lp~~i~~l~~L~~L~L~~~~~l~~lp-------------~~~~~L~~L~~L~L~~n~l~~~~~---- 561 (720)
|++|.+... +...+...++|++|++++|.+...-. ......+.|+.|++++|.+.....
T Consensus 100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 999875332 33344567889999999886422100 012356778899988887653211
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-----cc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-----SL 636 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-----~l 636 (720)
......+.|+.|++..|.+..-. + .......+..+++| +.|+|++|.+. .+
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~~g---~----------------~~~l~~~l~~~~~L-----~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRPEG---I----------------EHLLLEGLAYCQEL-----KVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHH---H----------------HHHHHTTGGGCTTC-----CEEECCSSCCHHHHHHHH
T ss_pred chhhhhhhhcccccccccccccc---c----------------ccchhhhhcchhhh-----cccccccccccccccccc
Confidence 11122367888888665432200 0 00001113334444 56777777764 23
Q ss_pred cccccCCCCCceeeccccccccc---------cCCcc-cccceEeeecCcccc-----cchhhcc-CchhHhhhhhhccc
Q 047161 637 RGTINHLPKFKHLKLDDCKRLRS---------LSELP-SDIKKVRVHGCTSLA-----TISDALR-SCNSATSRIFCINC 700 (720)
Q Consensus 637 p~~i~~l~~L~~L~L~~c~~L~~---------lp~lp-~~L~~L~l~~c~~L~-----~lp~~~~-~~~~L~~l~~~~nc 700 (720)
...+..+++|++|+|++|. +.. ++..+ ++|++|++++|. ++ .+...+. ++++|+.+.+..|+
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 4456677788888888875 221 11222 457888887764 32 2333332 35667776666654
Q ss_pred c
Q 047161 701 P 701 (720)
Q Consensus 701 ~ 701 (720)
-
T Consensus 314 ~ 314 (344)
T d2ca6a1 314 F 314 (344)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.7e-08 Score=105.74 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=59.8
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCC-CCCCCCEEec
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTIN-GWKSLRTVNL 527 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~-~l~~L~~L~L 527 (720)
+..++++++|+|++|. ++. .....+...+..+++|++|+|++|.+.. .+...+. ...+|++|+|
T Consensus 23 ~~~l~~l~~L~L~~~~-------i~~----~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L 91 (460)
T d1z7xw1 23 LPLLQQCQVVRLDDCG-------LTE----ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91 (460)
T ss_dssp HHHHTTCSEEEEESSC-------CCH----HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred HHhCCCCCEEEeCCCC-------CCH----HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEEC
Confidence 3456777777777775 221 1223344447778888888888887421 2223332 2347888888
Q ss_pred cCCCCCcc----cCcCcCCCCCCCEEeccCccccc
Q 047161 528 SRCSKLEN----MPESLGQMESLEELDVSGTVIRQ 558 (720)
Q Consensus 528 ~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~ 558 (720)
++|.+... ++..+..+++|++|++++|.+..
T Consensus 92 ~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 92 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCCccccccccccchhhccccccccccccccchh
Confidence 88865432 45567778888888888887654
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.1e-07 Score=85.10 Aligned_cols=52 Identities=31% Similarity=0.518 Sum_probs=50.0
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|.|++++..|+.+..+|.+||++|+..|+|+|++|..|.||..|+...
T Consensus 39 g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a 90 (161)
T d1fyva_ 39 GMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFA 90 (161)
T ss_dssp TCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTT
T ss_pred CCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999666
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.4e-07 Score=83.10 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=49.3
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|.|++++..|+.+..++.+||++|+..|+|+|++|..|.||..|+...
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a 85 (149)
T d1fyxa_ 34 PFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFS 85 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCS
T ss_pred CceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.6e-07 Score=99.51 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=48.9
Q ss_pred hccCCCCcEEeccCCCCCc-----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccccCCcc
Q 047161 492 IELLTGLVFLNLNDCKILV-----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+...+.++.+++++|.... ..+........|+.+++++|.+... ....+...+.++.+++++|.+......
T Consensus 222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~ 301 (460)
T d1z7xw1 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301 (460)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4556777777777765321 1222334456777777777754432 122344566777777777766431111
Q ss_pred -----ccCCcCCceEEEeecCCCC
Q 047161 563 -----IFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 563 -----~~~~~~~L~~L~l~~~~~~ 581 (720)
.......|+.+.+.++.+.
T Consensus 302 ~l~~~l~~~~~~L~~l~l~~~~l~ 325 (460)
T d1z7xw1 302 LLCETLLEPGCQLESLWVKSCSFT 325 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred hhhccccccccccccccccccchh
Confidence 1111246777777665544
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.82 E-value=7.9e-05 Score=72.41 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=62.3
Q ss_pred hcCCeEEEEecCCcHHH------HHHHhccCCCCCCCCeEEEEcCChhhhhhc------------cccceEecCCCCHHH
Q 047161 204 RRRNVLVVIDDAVHIRQ------LNRLAGKHSWFGSGSRIIIPTRDEHLLRTL------------RVDGVYKVEKLDDDE 265 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gsrIivTTR~~~v~~~~------------~~~~~~~l~~L~~~~ 265 (720)
.++++++|+|++..... +..+..... ....-..+++++...+...+ .....+.+.+++.+|
T Consensus 134 ~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e 212 (283)
T d2fnaa2 134 SKDNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREE 212 (283)
T ss_dssp CSSCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHH
T ss_pred cccccccccchhhhhcccchHHHHHHHHHHHH-hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHH
Confidence 47899999998754211 222222211 12334455555554432221 112467899999999
Q ss_pred HHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 266 ALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 266 s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
+.+++.+.+-.. ...++ .++++++++|.|..+..+|..+..
T Consensus 213 ~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~ 254 (283)
T d2fnaa2 213 AIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLD 254 (283)
T ss_dssp HHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999987754221 22222 358899999999999988876643
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=4.3e-06 Score=74.61 Aligned_cols=88 Identities=22% Similarity=0.150 Sum_probs=61.6
Q ss_pred hHHHHhccCCCCcEEeccCCCCCc--ccCCCCCCCCCCCEEeccCCCCCcccCc-CcCCCCCCCEEeccCcccccCCcc-
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILV--RLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEELDVSGTVIRQPVPS- 562 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~L~~n~l~~~~~~- 562 (720)
.++.....+++|++|+|++|++.. .++..+..+++|++|+|++|.+ ..+++ ...+..+|+.|++++|++......
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i-~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~ 134 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC-CCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc-ccchhhhhhhccccceeecCCCCcCcCcccc
Confidence 334445679999999999998543 2344567799999999999864 44543 233455799999999998875442
Q ss_pred ------ccCCcCCceEEEe
Q 047161 563 ------IFFPSRILKVYLF 575 (720)
Q Consensus 563 ------~~~~~~~L~~L~l 575 (720)
+...+++|+.|+-
T Consensus 135 ~~y~~~i~~~~P~L~~LDg 153 (162)
T d1koha1 135 STYISAIRERFPKLLRLDG 153 (162)
T ss_dssp HHHHHHHHTTSTTCCEETT
T ss_pred hhHHHHHHHHCCCCCEECc
Confidence 2344578887753
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=2.8e-05 Score=69.12 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~ 532 (720)
..+++|++|+|++|. ++.++.- +..+..+++|++|+|++|. +..+++ ......+|+.|++++|.+
T Consensus 62 ~~~~~L~~L~Ls~N~-------i~~l~~~------~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNR-------LYRLDDM------SSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSC-------CCCCSGG------GTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCcc-------ccCCchh------HHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCc
Confidence 467899999999998 4444321 1117789999999999998 455554 223456799999999987
Q ss_pred CcccCc-------CcCCCCCCCEEe
Q 047161 533 LENMPE-------SLGQMESLEELD 550 (720)
Q Consensus 533 l~~lp~-------~~~~L~~L~~L~ 550 (720)
...... .+..+|+|+.||
T Consensus 128 ~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 128 SDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred CcCcccchhHHHHHHHHCCCCCEEC
Confidence 655442 266789999986
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.56 E-value=0.00079 Score=59.62 Aligned_cols=113 Identities=17% Similarity=0.074 Sum_probs=72.7
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~ 529 (720)
.+.++|+.|+|+++..+ ... ....+-..+...++|++|+|++|.+... +...+...++|++|+|++
T Consensus 12 ~n~~~L~~L~L~~~~~i---------~~~-~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~ 81 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRV---------SKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 81 (167)
T ss_dssp TTCSSCCEEECTTCCSS---------CHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred hCCCCCcEEEeCCCCCC---------CHH-HHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeeh
Confidence 35678999999875422 221 1122333477788999999999985432 223344568899999999
Q ss_pred CCCCcc----cCcCcCCCCCCCEEeccCcccccCCcc-------ccCCcCCceEEEee
Q 047161 530 CSKLEN----MPESLGQMESLEELDVSGTVIRQPVPS-------IFFPSRILKVYLFV 576 (720)
Q Consensus 530 ~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~~~-------~~~~~~~L~~L~l~ 576 (720)
|.+... +-..+...++|++|++++|.+..+... .....++|+.|++.
T Consensus 82 n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~ 139 (167)
T d1pgva_ 82 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 139 (167)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence 975532 233567778899999998866543211 11123677777764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.02 Score=53.80 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=56.5
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc--cccceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL--RVDGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+.-++|+|+++.. +.+..+...+.......++|+||.+.+ +.... .+ ..+++.+++.++..+.+.+.+-.....
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~~~ 209 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ 209 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhhcch-heeeecccchhhHHHHHHHHHHHcCCC
Confidence 3448889998863 445555555544556678777776543 21111 12 367899999999998886544211111
Q ss_pred chHHHHHHHHHHHhCCCch
Q 047161 281 KDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPL 299 (720)
..-++..+.|++.+.|-+-
T Consensus 210 ~~~~~~l~~i~~~s~Gd~R 228 (252)
T d1sxje2 210 LETKDILKRIAQASNGNLR 228 (252)
T ss_dssp ECCSHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHHHcCCcHH
Confidence 1113455678888888764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.22 Score=45.83 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-------------------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID------------------- 186 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~------------------- 186 (720)
..++++|-+..++.+.+++..+. -...+-|+|..|++.+. +...+...+.....
T Consensus 10 ~~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt------~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~ 82 (239)
T d1njfa_ 10 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTS------IARLLAKGLNCETGITATPCGVCDNCREIEQGR 82 (239)
T ss_dssp SGGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHH------HHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTC
T ss_pred CHHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHH------HHHHHHHHhcCccccccCccccchHHHHHHcCC
Confidence 34689999999999998885432 12345699999994332 22222222211100
Q ss_pred ----ceec-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc
Q 047161 187 ----IEIR-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL 250 (720)
Q Consensus 187 ----~~~~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~ 250 (720)
.... ......+.+++.++ +++-++|+|+++.. +.-..|...+......+++|+||.+.. +....
T Consensus 83 ~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i 162 (239)
T d1njfa_ 83 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 162 (239)
T ss_dssp CTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhH
Confidence 0000 01123445555553 35568999999864 334555555554556778877776543 32222
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -..+.+.+++.++-.+...+.+-.....-+ .+....+++.++|.+-
T Consensus 163 ~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~-~~~l~~i~~~s~Gd~R 211 (239)
T d1njfa_ 163 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLR 211 (239)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHTTTCHH
T ss_pred hhhhcccccccCcHHHhhhHHHHHHhhhccCCC-HHHHHHHHHHcCCCHH
Confidence 11 247889999999988877665532211111 2345678888888774
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.19 Score=47.07 Aligned_cols=137 Identities=19% Similarity=0.207 Sum_probs=83.1
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccc------ee------------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDI------EI------------ 189 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~------~~------------ 189 (720)
+.++||+++++++...|..... .-+-+||.+|+ +...+.+.+...+....-. ..
T Consensus 18 d~~igRd~Ei~~l~~iL~r~~k--~n~lLVG~~Gv------GKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~ 89 (268)
T d1r6bx2 18 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGV------GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT 89 (268)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTS------SHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC
T ss_pred CcccChHHHHHHHHHHHhcCcc--CCcEEECCCCC------cHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccC
Confidence 3589999999999999964332 23449999999 4444444444443221100 00
Q ss_pred ---ccchhhHHHHHHHH-hcCCeEEEEecCCcH----------HHHHHHhccCCCCCCC-CeEEEEcCChhhhhhcccc-
Q 047161 190 ---RNDFDGIKMIKREL-RRRNVLVVIDDAVHI----------RQLNRLAGKHSWFGSG-SRIIIPTRDEHLLRTLRVD- 253 (720)
Q Consensus 190 ---~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~~~~- 253 (720)
...++....+.+.+ +.+++++++||+... .+...+..+.- ..| =++|.||..+........+
T Consensus 90 ~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L--~rg~i~vIgatT~eey~~~~e~d~ 167 (268)
T d1r6bx2 90 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDR 167 (268)
T ss_dssp CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS--SSCCCEEEEEECHHHHHCCCCCTT
T ss_pred ccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHH--hCCCCeEEEeCCHHHHHHHHhhcH
Confidence 12222333344444 456799999997543 22333333322 233 4788888887776554322
Q ss_pred ------ceEecCCCCHHHHHHHHHHHh
Q 047161 254 ------GVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 254 ------~~~~l~~L~~~~s~~Lf~~~a 274 (720)
+.+.|++++.+++.+++...+
T Consensus 168 al~rrF~~I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 168 ALARRFQKIDITEPSIEETVQIINGLK 194 (268)
T ss_dssp SSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHhhhcccccCCCCHHHHHHHHHHhh
Confidence 378999999999999987644
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.14 Score=46.77 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc----cee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID----IEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~----~~~-----~~~~~~~ 196 (720)
..+++||-+..++.+.+++..+ .+..+-++|..|++. ..+.+.+++++..... .+. ...+...
T Consensus 12 ~~~divg~~~~~~~L~~~i~~~--~~~~lLl~Gp~G~GK------ttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~ 83 (227)
T d1sxjc2 12 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGK------TSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR 83 (227)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSH------HHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH
T ss_pred CHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCCh------hHHHHHHHHHhhcCCCcceeEEecccccCCeeeee
Confidence 3467999999999999998543 343456999999943 3444444444221110 011 1111111
Q ss_pred HHHHHHH------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc-cccceEecCCCCHHHH
Q 047161 197 KMIKREL------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~~s 266 (720)
....... .+++-.+|+|+++.. ..-..+...+......++++++|... .+.... .-...+++.+++.++-
T Consensus 84 ~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i 163 (227)
T d1sxjc2 84 NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 163 (227)
T ss_dssp THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred cchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhcccccccccc
Confidence 1111111 133448889999754 33344554444455677888877653 333322 2234789999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
.+...+.+-.....-+ .+....|++.++|-.
T Consensus 164 ~~~l~~I~~~e~i~i~-~~~l~~i~~~s~Gd~ 194 (227)
T d1sxjc2 164 ERRIANVLVHEKLKLS-PNAEKALIELSNGDM 194 (227)
T ss_dssp HHHHHHHHHTTTCCBC-HHHHHHHHHHHTTCH
T ss_pred ccccccccccccccCC-HHHHHHHHHHcCCcH
Confidence 9888877654411111 244577888898864
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.98 E-value=0.0056 Score=53.85 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHhccCCCCcEEeccCCCCCcc-----cCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccccC
Q 047161 489 QKLIELLTGLVFLNLNDCKILVR-----LPSTINGWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 489 ~~~i~~l~~L~~L~Ls~n~~~~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
.....+.++|+.|+|++++.++. +-..+...++|++|+|++|.+... +...+...++|++|++++|.+...
T Consensus 8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~ 87 (167)
T d1pgva_ 8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 87 (167)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence 33355678999999998542321 233466778999999999976432 223455678899999999987752
Q ss_pred Cc----cccCCcCCceEEEeecCCCC
Q 047161 560 VP----SIFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 560 ~~----~~~~~~~~L~~L~l~~~~~~ 581 (720)
.. ......++|+.|++.+|...
T Consensus 88 g~~~l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 88 LLARLLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred HHHHHHHHHHhCCcCCEEECCCCcCC
Confidence 11 11222378999998666443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.46 E-value=0.3 Score=45.17 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=88.5
Q ss_pred CCCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c---
Q 047161 127 LDDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N--- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~--- 191 (720)
-++++|.++.+++|.+.+. . +....+-|-++|..|. +...+.+.+... .+..-..+. +
T Consensus 8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGt------GKT~la~aia~~-~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGV------GKTHLARAVAGE-ARVPFITASGSDFVE 80 (247)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTS------SHHHHHHHHHHH-TTCCEEEEEHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCC------ChhHHHHHHHHH-cCCCEEEEEhHHhhh
Confidence 3579999988887765432 1 1223455789999998 444555555555 222211111 0
Q ss_pred --chhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCCCCCCe-E-EEEcCChhhh
Q 047161 192 --DFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWFGSGSR-I-IIPTRDEHLL 247 (720)
Q Consensus 192 --~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~gsr-I-ivTTR~~~v~ 247 (720)
..+....+++.+ +..+..|++||++... ....+...+......++ | |.||...+-.
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~l 160 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 160 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccc
Confidence 001122233322 3567899999986321 12223322222222233 3 3467654332
Q ss_pred h-hc----cccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 248 R-TL----RVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 248 ~-~~----~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
. .+ ..++.+++...+.++-.++|+.+..+. ....++. .+++.+.|+.
T Consensus 161 d~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~----~la~~t~g~s 214 (247)
T d1ixza_ 161 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLA----LLAKRTPGFV 214 (247)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHH----HHHHTCTTCC
T ss_pred CHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHH----HHHHHCCCCC
Confidence 2 12 457789999999999999999877554 3333443 4556677753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.09 Score=48.43 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=90.5
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-----cccee-----ccchhh
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-----IDIEI-----RNDFDG 195 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-----~~~~~-----~~~~~~ 195 (720)
..+++||.+..++.+..++.. .....+-++|..|++.+ .+.+.+.+++... ..... ......
T Consensus 10 ~~~diig~~~~~~~l~~~i~~--~~~~~lll~Gp~G~GKT------tl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (237)
T d1sxjd2 10 NLDEVTAQDHAVTVLKKTLKS--ANLPHMLFYGPPGTGKT------STILALTKELYGPDLMKSRILELNASDERGISIV 81 (237)
T ss_dssp STTTCCSCCTTHHHHHHHTTC--TTCCCEEEECSTTSSHH------HHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred CHHHccCcHHHHHHHHHHHHc--CCCCeEEEECCCCCChH------HHHHHHHHHHcCCcccccchhheeccccccchHH
Confidence 446799999999999999853 33444779999999433 3333333332110 00000 011111
Q ss_pred HHHHHHH----------------HhcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cce
Q 047161 196 IKMIKRE----------------LRRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGV 255 (720)
Q Consensus 196 ~~~l~~~----------------l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~ 255 (720)
...++.. ..+++=.+|+|+++.. ..+..+...........++|+||.. ..+...... -..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~ 161 (237)
T d1sxjd2 82 REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 161 (237)
T ss_dssp TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhh
Confidence 1112221 1223336899998753 3344444434334455666666554 333322211 247
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 256 YKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 256 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
+++.+++.++..+.+.+.+......-+ .+..+.|++.++|-.
T Consensus 162 i~f~~~~~~~~~~~L~~i~~~e~i~i~-~~~l~~ia~~s~gd~ 203 (237)
T d1sxjd2 162 FRFKALDASNAIDRLRFISEQENVKCD-DGVLERILDISAGDL 203 (237)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHTSSCH
T ss_pred hccccccccccchhhhhhhhhhcCcCC-HHHHHHHHHHcCCCH
Confidence 899999999999999887765411111 244577888887754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.32 E-value=0.63 Score=43.16 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=90.2
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec------
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~------ 190 (720)
++++|.|+.+++|.+.+.. +-...+-|-++|..|.+ ...+.+.+... ....-....
T Consensus 4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtG------KT~l~~ala~~-~~~~~~~i~~~~l~~ 76 (258)
T d1e32a2 4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTG------KTLIARAVANE-TGAFFFLINGPEIMS 76 (258)
T ss_dssp GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSS------HHHHHHHHHHH-TTCEEEEECHHHHTT
T ss_pred hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCC------chHHHHHHHHH-hCCeEEEEEchhhcc
Confidence 4689999999998776421 12234557799999984 33444445444 221111110
Q ss_pred -----cchhhHHHHHHHHhcCCeEEEEecCCcHH-------------HHHHHhccCC--CCCCCCeEEEEcCChhhhhh-
Q 047161 191 -----NDFDGIKMIKRELRRRNVLVVIDDAVHIR-------------QLNRLAGKHS--WFGSGSRIIIPTRDEHLLRT- 249 (720)
Q Consensus 191 -----~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~~~- 249 (720)
............-..++..|++||++... ....+..... ....+--||.||...+-...
T Consensus 77 ~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~a 156 (258)
T d1e32a2 77 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 156 (258)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGG
T ss_pred cccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchh
Confidence 11111222223335788999999997531 0111111111 12233345668876654322
Q ss_pred ---c-cccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 250 ---L-RVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 250 ---~-~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
. ..++.+++...+.++-.++|..+.-+. ....++ ..+++.+.|+-
T Consensus 157 l~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~----~~la~~t~G~s 207 (258)
T d1e32a2 157 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 207 (258)
T ss_dssp GTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCH----HHHHHHCTTCC
T ss_pred hhhcccccceeECCCCCHHHHHHHhhhhccCcccccccch----hhhhhcccCCC
Confidence 1 367899999999999999998765332 222233 46778888864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.25 Score=44.83 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=93.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-----~~~~~~~ 196 (720)
..+++||-+..++.+.+++..+ .+.-+-++|..|++.+ .+.+-+++++... .-... .......
T Consensus 13 ~~~d~ig~~~~~~~L~~~~~~~--~~~~~ll~Gp~G~GKT------t~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~ 84 (224)
T d1sxjb2 13 VLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKT------TSVHCLAHELLGRSYADGVLELNASDDRGIDVVR 84 (224)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHH------HHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHcC--CCCeEEEECCCCCCch------hhHHHHHHHHhccccccccccccccccCCceehh
Confidence 3467999999999999998543 3444668999999444 3333333332111 00111 1111122
Q ss_pred HHHHHHHh-------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc-cccceEecCCCCHHH
Q 047161 197 KMIKRELR-------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL-RVDGVYKVEKLDDDE 265 (720)
Q Consensus 197 ~~l~~~l~-------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~~ 265 (720)
..+..... ++.-++|+|+++.. .....+...........++++||.+ ..+.... ..-..+++++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~ 164 (224)
T d1sxjb2 85 NQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDED 164 (224)
T ss_dssp THHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred hHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhh
Confidence 22222222 35568889998854 2334444333334455666666654 3433322 123478999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 266 ALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 266 s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
-...+.+.+-.....-+ .+....|++.|+|-+-
T Consensus 165 i~~~l~~i~~~e~~~i~-~~~l~~I~~~s~Gd~R 197 (224)
T d1sxjb2 165 VLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMR 197 (224)
T ss_dssp HHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHhcccCCC-HHHHHHHHHHcCCcHH
Confidence 99988877753311111 2345788999998764
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.99 E-value=0.01 Score=51.96 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~ 529 (720)
.+.+.|++|+|+++..+ ... ....+-..+...++|+.|++++|.+... +-..+...++++.+++++
T Consensus 14 ~~~~~L~~L~L~~~~~i---------~~~-~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~ 83 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNI---------PVP-TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 83 (166)
T ss_dssp TTCTTCCEEECTTCTTC---------CHH-HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred hcCCCCcEEEcCCCCCC---------CHH-HHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcc
Confidence 45689999999875422 211 1223334467789999999999974332 223345678999999999
Q ss_pred CCCCcc----cCcCcCCCCCCCEEecc--CcccccC----CccccCCcCCceEEEee
Q 047161 530 CSKLEN----MPESLGQMESLEELDVS--GTVIRQP----VPSIFFPSRILKVYLFV 576 (720)
Q Consensus 530 ~~~l~~----lp~~~~~L~~L~~L~L~--~n~l~~~----~~~~~~~~~~L~~L~l~ 576 (720)
|..... +-..+...++|+.++|+ +|.+... ........++|+.|++.
T Consensus 84 ~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 84 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred ccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 875432 33556778889886665 4455331 11112223788888874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.84 E-value=0.34 Score=45.09 Aligned_cols=143 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCCCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh-------------------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL------------------- 182 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~------------------- 182 (720)
.++.++|||.++++|..+|.. .....+.+-|+|+.|++ ...+.+.+.+.+.
T Consensus 14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtG------KT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 87 (276)
T d1fnna2 14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTG------KTVTLRKLWELYKDKTTARFVYINGFIYRNFT 87 (276)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSS------HHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCC------HHHHHHHHHHHHhcccCCcEEEecchhhhhhh
Confidence 445699999999999998852 23446788899999993 2233333333311
Q ss_pred -----------hcccceeccchhhHHHHHHHHh--cCCeEEEEecCCcHHH-----HHHHhccCCCC-CCCCeEEEEcCC
Q 047161 183 -----------MEIDIEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIRQ-----LNRLAGKHSWF-GSGSRIIIPTRD 243 (720)
Q Consensus 183 -----------~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~-~~gsrIivTTR~ 243 (720)
................+.+.+. .....+++|++++... ...+....... ...-.+|.+|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (276)
T d1fnna2 88 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 167 (276)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred hhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCc
Confidence 1111111122233344444443 3567777888775322 22222211111 222345566665
Q ss_pred hhhhhhcc-------ccceEecCCCCHHHHHHHHHHHh
Q 047161 244 EHLLRTLR-------VDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 244 ~~v~~~~~-------~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
......+. ....+.+.+.+.++.++.+.+++
T Consensus 168 ~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~ 205 (276)
T d1fnna2 168 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 205 (276)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred hhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence 44332221 12457899999999999988755
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.51 Score=43.75 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--ccc---
Q 047161 128 DDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RND--- 192 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~~--- 192 (720)
++++|.++.+++|.+.+. . +....+-+-++|..|. +...+.+.+.+. ++..-... .+.
T Consensus 12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGt------GKT~la~~iA~~-~~~~~~~i~~~~l~~~ 84 (256)
T d1lv7a_ 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGT------GKTLLAKAIAGE-AKVPFFTISGSDFVEM 84 (256)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTS------CHHHHHHHHHHH-HTCCEEEECSCSSTTS
T ss_pred HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCC------CccHHHHHHHHH-cCCCEEEEEhHHhhhc
Confidence 679999999888865432 1 1223455779999998 445555556555 22211111 110
Q ss_pred --hhhHHHHHHH----HhcCCeEEEEecCCcH-------------H---HHHHHhccCCC--CCCCCeEEEEcCChhhhh
Q 047161 193 --FDGIKMIKRE----LRRRNVLVVIDDAVHI-------------R---QLNRLAGKHSW--FGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 193 --~~~~~~l~~~----l~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~--~~~gsrIivTTR~~~v~~ 248 (720)
.+...++++. -+..+.+|++||++.. . ....+...++. ...+--||.||...+...
T Consensus 85 ~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld 164 (256)
T d1lv7a_ 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (256)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred chhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCC
Confidence 0112233332 2466789999999632 1 12233322221 122334566887654432
Q ss_pred -h----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 249 -T----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 -~----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..++.+++...+.++-.++|..+.-+. .+..++. .+++++.|+.
T Consensus 165 ~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~----~la~~t~G~s 217 (256)
T d1lv7a_ 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAA----IIARGTPGFS 217 (256)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHH----HHHHTCTTCC
T ss_pred HhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHH----HHHHhCCCCC
Confidence 1 2467899999999999999998776433 3333443 4566777765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.64 E-value=0.57 Score=42.07 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred CCccccchhH--HHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccce-eccchhhHH-------
Q 047161 128 DDLVEMNSRL--KKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIE-IRNDFDGIK------- 197 (720)
Q Consensus 128 ~~~vG~~~~~--~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~~------- 197 (720)
..+||-..+. ..+.++..........+-|||..|. |..++.+.+..++....... ..+..+...
T Consensus 11 nF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~------GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1l8qa2 11 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGT------GKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLK 84 (213)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSS------SHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCC------cHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHH
Confidence 3456654332 2233333322233344679999999 44556666655533221111 111112222
Q ss_pred -----HHHHHHhcCCeEEEEecCCcH---HHHHH-HhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEec
Q 047161 198 -----MIKRELRRRNVLVVIDDAVHI---RQLNR-LAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKV 258 (720)
Q Consensus 198 -----~l~~~l~~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l 258 (720)
.+.+.++ .-=+|++|||... ..|+. +...+.. ...|.+||+||+.. ++...+....++++
T Consensus 85 ~~~~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i 163 (213)
T d1l8qa2 85 KGTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 163 (213)
T ss_dssp HTCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred ccchhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEE
Confidence 2233333 3567899999753 34543 2222221 24688899999843 23333344457778
Q ss_pred CCCCHHHHHHHHHHHh
Q 047161 259 EKLDDDEALELFNKRA 274 (720)
Q Consensus 259 ~~L~~~~s~~Lf~~~a 274 (720)
+ ++.++-.+++.++|
T Consensus 164 ~-p~d~~~~~iL~~~a 178 (213)
T d1l8qa2 164 E-LDNKTRFKIIKEKL 178 (213)
T ss_dssp C-CCHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHH
Confidence 5 57666667766665
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.14 E-value=0.55 Score=42.65 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh----cccceec--c---chhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM----EIDIEIR--N---DFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~----~~~~~~~--~---~~~~~ 196 (720)
..+++||-+..++.+..++..+ ...-+-++|..|++.+ .+.+.++..+.. ....+.. + .....
T Consensus 22 ~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKT------tla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~ 93 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKT------TAALALARELFGENWRHNFLELNASDERGINVIR 93 (231)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHH------HHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred CHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHH------HHHHHHHHHHHhcccCCCeeEEecCcccchhHHH
Confidence 3477999999999999998643 4455779999999444 333334433211 1111111 1 11112
Q ss_pred HHHHHHH------hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcC-Chhhhhhcc-ccceEecCCCCHHHH
Q 047161 197 KMIKREL------RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTR-DEHLLRTLR-VDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~~~-~~~~~~l~~L~~~~s 266 (720)
....+.. ..++..+++||++. ...+..+...+........+|.||. ...+..... -...+.+.+.+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~ 173 (231)
T d1iqpa2 94 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 173 (231)
T ss_dssp HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHH
T ss_pred HHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchhhH
Confidence 2222222 23667888999875 3445555544443333445555554 444433321 124788999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
...+.+.+......-+ .+..+.|++.|+|-.
T Consensus 174 ~~~l~~~~~~e~i~i~-~~~l~~I~~~~~gdi 204 (231)
T d1iqpa2 174 AKRLRYIAENEGLELT-EEGLQAILYIAEGDM 204 (231)
T ss_dssp HHHHHHHHHTTTCEEC-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCH
Confidence 9888887765421111 234577888888854
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.92 E-value=0.0071 Score=53.05 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=39.0
Q ss_pred hccCCCCcEEeccCCCCCc-----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccc
Q 047161 492 IELLTGLVFLNLNDCKILV-----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
..+.++|++|+|+++..++ .+-..+...++|++|++++|.+... +-..+...++++.|++++|.+.
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 4566788888888743221 1223345667788888887754332 2223445566777777766554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=1.6 Score=38.73 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=64.0
Q ss_pred cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+||++. .+....+...+.......++|.||++.+ +...... -..+.+.+++.++....+....- ..
T Consensus 107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~~---~~ 183 (207)
T d1a5ta2 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT---MS 183 (207)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC---CC
T ss_pred CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHcCC---CC
Confidence 4666899999985 3456777777776667889888777654 5443321 24789999999999988876431 11
Q ss_pred chHHHHHHHHHHHhCCCchHHH
Q 047161 281 KDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~ 302 (720)
++....+++.++|.|-.+.
T Consensus 184 ---~~~~~~i~~~s~Gs~r~al 202 (207)
T d1a5ta2 184 ---QDALLAALRLSAGSPGAAL 202 (207)
T ss_dssp ---HHHHHHHHHHTTTCHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHH
Confidence 3456778889999885443
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.39 E-value=1.3 Score=41.18 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.6
Q ss_pred CCCCccccchhHHHHHHhhh----cc---CCCeEEEEEecCCCcc
Q 047161 126 ILDDLVEMNSRLKKLRLLLD----AE---SRDVRMIGICGMGGVE 163 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~----~~---~~~~~vi~I~G~gGi~ 163 (720)
.++.++||+.++++|...+. .+ ++...++.|+|+.|++
T Consensus 14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtG 58 (287)
T d1w5sa2 14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIG 58 (287)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCC
Confidence 56789999999999988763 11 2223456789999993
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.99 Score=41.94 Aligned_cols=163 Identities=14% Similarity=0.162 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.++++|.++.+++|.+.+.. +-...+-|-++|..|. +...+.+.+.+.+ +..-....
T Consensus 6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~Gt------GKT~l~~ala~~~-~~~~~~~~~~~l~ 78 (265)
T d1r7ra3 6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC------GKTLLAKAIANEC-QANFISIKGPELL 78 (265)
T ss_dssp CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTS------SHHHHHHHHHHHT-TCEEEEECHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCC------cchhHHHHHHHHh-CCcEEEEEHHHhh
Confidence 35688999888887765531 1223456779999998 4555556665552 22111110
Q ss_pred --cchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 191 --NDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 --~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
........++..+ ...+.+|++||++... ....+...+... ..+--||.||...+-
T Consensus 79 ~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 158 (265)
T d1r7ra3 79 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 158 (265)
T ss_dssp TSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT
T ss_pred hccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchh
Confidence 1112223333333 4678999999997321 123344344322 234456778776543
Q ss_pred hh-h----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchH
Q 047161 247 LR-T----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 247 ~~-~----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLa 300 (720)
.. . -..++.+++...+.++-.++|..+.-+. ....++ .++++++.|+.-|
T Consensus 159 ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l----~~la~~t~g~s~~ 215 (265)
T d1r7ra3 159 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 215 (265)
T ss_dssp TSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCC----HHHHHHHCSSCCH
T ss_pred CCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhH----HHHHhcCCCCCHH
Confidence 21 1 1357789999999999999998764332 222233 4566777776543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.59 Score=41.02 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc------ceec-----------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID------IEIR----------- 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~------~~~~----------- 190 (720)
+.+||||++++++...|...... -+-+||.+|+ +...+.+.+...+....- ..+.
T Consensus 22 d~~igRd~Ei~~l~~iL~r~~k~--n~lLvG~pGV------GKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~ 93 (195)
T d1jbka_ 22 DPVIGRDEEIRRTIQVLQRRTKN--NPVLIGEPGV------GKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 93 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSC--EEEEECCTTS------CHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTT
T ss_pred CCCcCcHHHHHHHHHHHhccCCC--CeEEEecCCc------ccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccC
Confidence 35899999999999999643222 2458999999 444444444444322110 1110
Q ss_pred ----cchhhHHHHHHHH-h-cCCeEEEEecCCcHHH----------HHHHhccCCCCCCCCeEEEEcCChhhhhhccc--
Q 047161 191 ----NDFDGIKMIKREL-R-RRNVLVVIDDAVHIRQ----------LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV-- 252 (720)
Q Consensus 191 ----~~~~~~~~l~~~l-~-~kr~LlVLDdv~~~~~----------~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-- 252 (720)
..++....+-+.+ + ..++.+++||+...-. -+-|+..+. ...=++|.||..+...+....
T Consensus 94 ~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT~eey~~~~e~d~ 171 (195)
T d1jbka_ 94 KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDA 171 (195)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCH
T ss_pred CccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCCHHHHHHHHHcCH
Confidence 1122222233333 2 3479999999865311 122222222 122467888876665544322
Q ss_pred -----cceEecCCCCHHHHHHH
Q 047161 253 -----DGVYKVEKLDDDEALEL 269 (720)
Q Consensus 253 -----~~~~~l~~L~~~~s~~L 269 (720)
=+.+.|++.+.+++..+
T Consensus 172 aL~rrF~~I~V~Ep~~e~t~~I 193 (195)
T d1jbka_ 172 ALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHhcCCEeecCCCCHHHHHHH
Confidence 14778888888887654
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.43 E-value=1.5 Score=43.12 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccc------ee------------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDI------EI------------ 189 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~------~~------------ 189 (720)
+.+||||.++++++..|......- +-+||.+|+ +...+.+.+...+....-+ .+
T Consensus 22 d~~~gr~~ei~~~~~~L~r~~k~n--~llvG~~Gv------GKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~ 93 (387)
T d1qvra2 22 DPVIGRDEEIRRVIQILLRRTKNN--PVLIGEPGV------GKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA 93 (387)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCC--CEEEECTTS------CHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred CCCcCcHHHHHHHHHHHhcCCCCC--CeEECCCCC------CHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhccc
Confidence 458999999999999986332221 246799998 3444444444443222111 11
Q ss_pred ---ccchhhHHHHHHHHhc--CCeEEEEecCCcHHH----------HHHHhccCCCCCCCCeEEEEcCChhhhhhccc--
Q 047161 190 ---RNDFDGIKMIKRELRR--RNVLVVIDDAVHIRQ----------LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV-- 252 (720)
Q Consensus 190 ---~~~~~~~~~l~~~l~~--kr~LlVLDdv~~~~~----------~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-- 252 (720)
...++....+...+.. ..+.|++|++...-. -+-|++.+. ...=++|.||....... +..
T Consensus 94 ~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~--rg~~~~I~~tT~~ey~~-~e~d~ 170 (387)
T d1qvra2 94 KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYRE-IEKDP 170 (387)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHH-HTTCT
T ss_pred CcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh--CCCcceeeecCHHHHHH-hcccH
Confidence 1222223333344433 468999999875421 112222221 11236777777666543 322
Q ss_pred -----cceEecCCCCHHHHHHHHHHHh
Q 047161 253 -----DGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 253 -----~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
=+++.|++.+.+++.+++...+
T Consensus 171 al~rrF~~v~v~ep~~~~~~~il~~~~ 197 (387)
T d1qvra2 171 ALERRFQPVYVDEPTVEETISILRGLK 197 (387)
T ss_dssp TTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCcHHHHHHHHHHHH
Confidence 1478999999999999987654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.22 E-value=4.7 Score=36.50 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=72.9
Q ss_pred CCccccchhHHHHHHhhh-------c-cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc--------
Q 047161 128 DDLVEMNSRLKKLRLLLD-------A-ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN-------- 191 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~-------~-~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~-------- 191 (720)
.++||..+.++.+.+-.. . .....+-|-++|..|. +...+.+.+..+ .+..-.....
T Consensus 9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGt------GKT~la~alA~~-~~~~~~~i~~~~~~~g~~ 81 (246)
T d1d2na_ 9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHS------GKTALAAKIAEE-SNFPFIKICSPDKMIGFS 81 (246)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTS------SHHHHHHHHHHH-HTCSEEEEECGGGCTTCC
T ss_pred cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCC------CHHHHHHHHhhc-cccccccccccccccccc
Confidence 458888887776654432 1 1123566789999998 444555555555 2222111111
Q ss_pred chhhHHHHHHH----HhcCCeEEEEecCCcH------------HHHHHHhccCCCC-CCCCe--EEEEcCChhhhhhcc-
Q 047161 192 DFDGIKMIKRE----LRRRNVLVVIDDAVHI------------RQLNRLAGKHSWF-GSGSR--IIIPTRDEHLLRTLR- 251 (720)
Q Consensus 192 ~~~~~~~l~~~----l~~kr~LlVLDdv~~~------------~~~~~l~~~~~~~-~~gsr--IivTTR~~~v~~~~~- 251 (720)
.......+++. -+.....|++||++.. .....+...+... ..+++ ||.||...+.+....
T Consensus 82 ~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~ 161 (246)
T d1d2na_ 82 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161 (246)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred ccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhh
Confidence 11112233332 3456789999998532 1233444333322 23555 455887776655432
Q ss_pred ---ccceEecCCCC-HHHHHHHHHHH
Q 047161 252 ---VDGVYKVEKLD-DDEALELFNKR 273 (720)
Q Consensus 252 ---~~~~~~l~~L~-~~~s~~Lf~~~ 273 (720)
.+..+.++.+. .++-++.+...
T Consensus 162 ~~rF~~~i~~P~~~~r~~il~~l~~~ 187 (246)
T d1d2na_ 162 LNAFSTTIHVPNIATGEQLLEALELL 187 (246)
T ss_dssp TTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred cCccceEEecCCchhHHHHHHHHHhc
Confidence 24456675554 45555655544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.55 E-value=1.9 Score=39.29 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCCccccchhHHHHHHhhhc---------------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-
Q 047161 127 LDDLVEMNSRLKKLRLLLDA---------------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~---------------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~- 190 (720)
.++++|.+..+++|.+++.. +....+.+-++|..|++. ..+.+.+.+++ ...-....
T Consensus 13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GK------Tt~a~~la~~~-~~~~~~~~~ 85 (253)
T d1sxja2 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGK------TTAAHLVAQEL-GYDILEQNA 85 (253)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSH------HHHHHHHHHHT-TCEEEEECT
T ss_pred HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCH------HHHHHHHHHHH-Hhhhhcccc
Confidence 47899999999999888742 123456788999999933 33334444432 11111110
Q ss_pred ----cchhhHHHH------------------HHHHhcCCeEEEEecCCcHH-----HHHHHhccCCCCCCCCeEEEEcCC
Q 047161 191 ----NDFDGIKMI------------------KRELRRRNVLVVIDDAVHIR-----QLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 191 ----~~~~~~~~l------------------~~~l~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
+.......+ .....++..++++|++.... .+..+..... .....|++|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~--~~~~~ii~i~~~ 163 (253)
T d1sxja2 86 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNE 163 (253)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESC
T ss_pred ccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhc--cccccccccccc
Confidence 000000000 01113467788899986431 1333332211 122345555432
Q ss_pred --h-hhhhhccccceEecCCCCHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHHhCCCc
Q 047161 244 --E-HLLRTLRVDGVYKVEKLDDDEALELFNKRAFD-G-QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 244 --~-~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~-~-~~~~~~~~~~~~i~~~c~glP 298 (720)
. .+.........+++.+.+.++-.+.+...+-. + ...+ +....|++.++|-.
T Consensus 164 ~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~---~~l~~i~~~s~GDi 220 (253)
T d1sxja2 164 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDI 220 (253)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCH
T ss_pred ccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCH---HHHHHHHHhCCCcH
Confidence 2 22222223457899999999888877765422 1 2222 23467788888855
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.50 E-value=11 Score=33.33 Aligned_cols=168 Identities=18% Similarity=0.114 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc-chhhHHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN-DFDGIKMIKRE 202 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~ 202 (720)
.+++||-+..++++..++.. .....+-+-++|..|+ +...+.+.+.+. .+........ .......+...
T Consensus 8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGt------GKT~lA~~la~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (238)
T d1in4a2 8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL------GKTTLAHIIASE-LQTNIHVTSGPVLVKQGDMAAI 80 (238)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTS------SHHHHHHHHHHH-HTCCEEEEETTTCCSHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCC------cHHHHHHHHHhc-cCCCcccccCcccccHHHHHHH
Confidence 36799999999999888752 2233445679999999 444445555555 2222111111 11112223333
Q ss_pred H--hcCCeEEEEecCCcHHH-----HHHHhccCC---------------CCCCCCeEEE-EcCChhhhh--hccccceEe
Q 047161 203 L--RRRNVLVVIDDAVHIRQ-----LNRLAGKHS---------------WFGSGSRIII-PTRDEHLLR--TLRVDGVYK 257 (720)
Q Consensus 203 l--~~kr~LlVLDdv~~~~~-----~~~l~~~~~---------------~~~~gsrIiv-TTR~~~v~~--~~~~~~~~~ 257 (720)
+ .+++..+++|.+..... ......... ...+...+|. |++...+.. .......+.
T Consensus 81 ~~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~ 160 (238)
T d1in4a2 81 LTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILE 160 (238)
T ss_dssp HHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEE
T ss_pred HHhhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEE
Confidence 3 35677888898765321 111111110 0012334444 444444422 234455789
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 258 VEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 258 l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
++..+.++...++...+..... .-..+....++++++|-+-.+.
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~i~~~s~gd~R~ai 204 (238)
T d1in4a2 161 LDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAI 204 (238)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCCHHHHHHHHHHhhhhccc-hhhHHHHHHHHHhCCCCHHHHH
Confidence 9999999999998877654311 1123446778888888765443
|