Citrus Sinensis ID: 047165


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-----
SSSSSTGLFQIYHFCYRAMGLRSSGRKLSFDILSEAASVEDAADSRLFRRSNSLPTHRHTEVSMPKNRKRKKHKKKKQSSPDFAVISEDPVSDSNAESAASGVVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINNGGELRQRNVAGNDEAESREEEISVEKQQQRSSEANGSVVTKLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKHHLHFD
cccccccHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEEccccccccccccccHHEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEHEHHHHHHHccHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
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
ssssstglFQIYHFCYRAMGLRSSGRKLSFDILSEAasvedaadsrlfrrsnslpthrhtevsmpknrkrkkhkkkkqsspdfavisedpvsdsNAESAASGVVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINNGGELRQRNVAGNDEAESREEEisvekqqqrsseangsvvtkletaesldWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLqstttlgdekerQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKHHLHFD
SSSSSTGLFQIYHFCYRAMGLRSSGRKLSFDILseaasvedaadsRLFRRSNSLPTHRHTEVSMPknrkrkkhkkkkQSSPDFAVISEDPVSDSNAESAASGVVFGNRSDANCQSYVASVCASSTITVaaaengynniinnggeLRQRNVAGNDeaesreeeisveKQQQRSSEANGSVVTKLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVahnnallallvsnnfaEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKHHLHFD
******GLFQIYHFCYRAMGLRSSGRKLSFDIL*********************************************************************VVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINN***********************************************LDWKRLMAEDPNYMYPAETSPLKYFMEEMYTG***************QRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQK********
*****TG**QIYHFCYRAMG************************************************************************************************************************************************************************************************FMEEMYT**************ERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVK************
SSSSSTGLFQIYHFCYRAMGLRSSGRKLSFDILSEAASVEDAADSRLFRRSNSLPT*************************DFAVIS************ASGVVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINNGGELRQRN********************************KLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRC**********
*****TGLFQIYHFCYRAMGLRSSGRKLSFDILSE****************************************************************ASGVVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINNGGELRQRNVA*************************************LDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKH*****
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SSSSSTGLFQIYHFCYRAMGLRSSGRKLSFDILSEAASVEDAADSRLFRRSNSLPTHRHTEVSMPKNRKRKKHKKKKQSSPDFAVISEDPVSDSNAESAASGVVFGNRSDANCQSYVASVCASSTITVAAAENGYNNIINNGGELRQRNVAGNDEAESREEEISVEKQQQRSSEANGSVVTKLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKRKHHLHFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query605 2.2.26 [Sep-21-2011]
F4HVJ3624 Protein POLLEN DEFECTIVE yes no 0.965 0.935 0.577 0.0
Q4VBD2564 Transmembrane anterior po yes no 0.550 0.590 0.337 6e-48
Q6NXT6567 Transmembrane anterior po yes no 0.623 0.664 0.320 1e-47
Q5ZLG8581 Transmembrane anterior po yes no 0.623 0.648 0.308 1e-46
Q550C1828 Protein TAPT1 homolog OS= yes no 0.530 0.387 0.342 1e-46
Q9U3H8 712 Protein TAPT1 homolog OS= yes no 0.719 0.610 0.273 8e-46
Q5EAY8546 Transmembrane anterior po N/A no 0.550 0.609 0.328 6e-42
Q9VED0 676 Protein TAPT1 homolog OS= yes no 0.522 0.467 0.295 5e-38
A2BIE7567 Transmembrane anterior po no no 0.517 0.552 0.323 3e-36
O60067649 Protein TAPT1 homolog OS= yes no 0.487 0.454 0.318 2e-34
>sp|F4HVJ3|POD1_ARATH Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/627 (57%), Positives = 446/627 (71%), Gaps = 43/627 (6%)

Query: 19  MGLRSSGRKLSFDILSEAASVEDAADSRLFRRSNSLPTHRHTEVSMPKNRKRKKHKKKKQ 78
           M +RSSGRKLSF+ILS+ +S E+  D    RRS+S P   +     P++  ++K  KKK+
Sbjct: 1   MAIRSSGRKLSFEILSQNSSFEN--DDTSIRRSSSDPITGNVASESPRDYGKRKRSKKKK 58

Query: 79  SSPD-FAVISEDPVSDSNAESAASG------VVFGNRSDANCQSYVASVCASSTITVAAA 131
              +    I E+  S S   + +SG       +F NR +        S      +T+   
Sbjct: 59  KKVNQVETILENGDSHSTIITGSSGDFGETTTMFENRLNYYGGGGSGSSGGGCVVTLLDG 118

Query: 132 ENGYNNIINNGGELRQRNVAGNDEAESRE--------------EEISVE----------- 166
           +  ++N  N  GELRQRNV G+ +  + E              EE SVE           
Sbjct: 119 QTVHHNGFN-FGELRQRNVNGSVDGSNDERWSDTLSSDKKLYMEETSVELSPSENPPFQE 177

Query: 167 -KQQQRSSEANGSVVTKLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQS 225
            + Q   SE NG+VV +L+T  SLDWK+L+A+DP+++     SP+KYFMEE+Y G SL+S
Sbjct: 178 VQHQFPRSEINGNVVRRLDTEASLDWKQLVADDPDFLSAETRSPMKYFMEEIYGGISLRS 237

Query: 226 TTTLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHT 285
           TTT G++ ER+R+YDTIFRLPWRCE+LID GFFVC +SFLSLLT+MP R+LL        
Sbjct: 238 TTTPGNDIERERIYDTIFRLPWRCEVLIDTGFFVCVNSFLSLLTVMPIRVLLIFMDAFKN 297

Query: 286 RQFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKL 345
           RQF RPSA+EL D ACF+VLA    LL  TDISLIYHMIRGQ TIKLYVVYN+LEIFD+L
Sbjct: 298 RQFRRPSASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRL 357

Query: 346 CQSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATN----ILIA--ITLS 399
           CQSF GDV   LF+SA+GL+    E +RF  WRF+SD AL MAA+     IL+A  ITLS
Sbjct: 358 CQSFCGDVFGALFSSAKGLSISPPEKLRFSTWRFVSDLALTMAASILHSFILLAQAITLS 417

Query: 400 TCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQN 459
           TCIVAHNNALLALLVSNNFAEIKS+VFKRFSKDNIH LVYADSIERFHISAFL+ VLAQN
Sbjct: 418 TCIVAHNNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQN 477

Query: 460 ILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQ 519
           ILE+EG WF +F++NA  VF CEM+IDIIKHSFLAKFNDIKPIAYSEFL+ LC+QTLN++
Sbjct: 478 ILESEGAWFGNFIYNATTVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIR 537

Query: 520 TENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVM 579
            E+ K NLTFVPLAPACVVIRVLTPV+AA LP +PLPWR+ W+++L  +TY+ML SLKV+
Sbjct: 538 PEDRKTNLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRMLWMVILFVITYIMLTSLKVL 597

Query: 580 IGMGLQRHATWYVKRCQKRK-HHLHFD 605
           IGMGL++HATWY+ RC++R   HLH D
Sbjct: 598 IGMGLRKHATWYINRCRRRNSSHLHND 624




Probable component of the calreticulin 3 (CRT3) complex, acting probably as a co-chaperone involved in protein retention in the endoplasmic reticulum lumen. Required for micropylar pollen tube guidance. Plays an essential role in cell plate orientation or positioning in early embryo patterning.
Arabidopsis thaliana (taxid: 3702)
>sp|Q4VBD2|TAPT1_MOUSE Transmembrane anterior posterior transformation protein 1 OS=Mus musculus GN=Tapt1 PE=2 SV=2 Back     alignment and function description
>sp|Q6NXT6|TAPT1_HUMAN Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens GN=TAPT1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLG8|TAPT1_CHICK Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus GN=TAPT1 PE=2 SV=2 Back     alignment and function description
>sp|Q550C1|TAPT1_DICDI Protein TAPT1 homolog OS=Dictyostelium discoideum GN=DDB_G0277313 PE=3 SV=2 Back     alignment and function description
>sp|Q9U3H8|TAPT1_CAEEL Protein TAPT1 homolog OS=Caenorhabditis elegans GN=F26F2.7 PE=3 SV=1 Back     alignment and function description
>sp|Q5EAY8|TAPT1_XENLA Transmembrane anterior posterior transformation protein 1 homolog OS=Xenopus laevis GN=tapt1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VED0|TAPT1_DROME Protein TAPT1 homolog OS=Drosophila melanogaster GN=CG7218 PE=2 SV=2 Back     alignment and function description
>sp|A2BIE7|TAPT1_DANRE Transmembrane anterior posterior transformation protein 1 homolog OS=Danio rerio GN=tapt1 PE=3 SV=1 Back     alignment and function description
>sp|O60067|TAPT1_SCHPO Protein TAPT1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.05 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
297737600626 unnamed protein product [Vitis vinifera] 0.966 0.934 0.678 0.0
225424426622 PREDICTED: transmembrane anterior poster 0.966 0.940 0.679 0.0
356508732602 PREDICTED: transmembrane anterior poster 0.930 0.935 0.645 0.0
449444072641 PREDICTED: protein POLLEN DEFECTIVE IN G 0.965 0.911 0.625 0.0
224108227595 predicted protein [Populus trichocarpa] 0.938 0.954 0.659 0.0
449521669641 PREDICTED: LOW QUALITY PROTEIN: protein 0.965 0.911 0.625 0.0
356518936599 PREDICTED: protein TAPT1 homolog [Glycin 0.925 0.934 0.640 0.0
30697603624 uncharacterized protein [Arabidopsis tha 0.965 0.935 0.577 0.0
17381092624 unknown protein [Arabidopsis thaliana] 0.965 0.935 0.575 0.0
297838561620 hypothetical protein ARALYDRAFT_475928 [ 0.958 0.935 0.586 0.0
>gi|297737600|emb|CBI26801.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/628 (67%), Positives = 483/628 (76%), Gaps = 43/628 (6%)

Query: 19  MGLRSSGRKLSFDILSEAASVEDAADSRLFRRSNSLPTHRHTEVSMPKNRKRKKHKKKKQ 78
           M LR  GRKLSF+ILS + S+ED  +  L  RSNS P H    VS  ++R  ++ +K K 
Sbjct: 1   MDLRRGGRKLSFEILSASNSIED--EETLSYRSNSDPIHEDAGVSPSESRTNRRKRKNKG 58

Query: 79  SSPDFAVIS----EDPVSDSNAESA---ASGVVFGNRS-----DANCQSY----VASVCA 122
           S      I+    EDPV+D   +S     + VVF N S     D N Q+Y    V +V  
Sbjct: 59  SKKKKKTITCPIDEDPVTDKGIDSVFDDPARVVFENGSCPNGFDVNYQNYSMQSVVTVLE 118

Query: 123 SSTITV-AAAENGYNNIINNG---GELRQRNVAGNDEAE-----------SREEEISVEK 167
            S  TV    E+ + N+  +G    ELRQR+V G+   E           + E  I V  
Sbjct: 119 ESVRTVLQVPESEFQNLRGDGHLLAELRQRSVNGSGGGEEVAGSQVDVNVAEESGIEVSS 178

Query: 168 QQQRSSEANGSVVTKLETAESLDWKRLMAEDPNYMYPAETSPLKYFMEEMYTGNSLQSTT 227
             ++  E NG +V +L++AESLDWKR M EDP Y    E SPLKYFMEEMY+GNSLQSTT
Sbjct: 179 SGKQRGEPNGGIVKQLDSAESLDWKRFMVEDPTYSSSLEKSPLKYFMEEMYSGNSLQSTT 238

Query: 228 TLGDEKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQ 287
           TLG+EKER+RVYDTIFRLPWRCELLIDVGFFVC DSFLSLLTIMPTRIL+ LWRLL+ RQ
Sbjct: 239 TLGNEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSLLTIMPTRILMALWRLLNARQ 298

Query: 288 FIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQ 347
           F RPSAAEL DF CFVV+AC V LL  TDISLIYHMIRGQGT+KLYVVYNVLEIFDKLCQ
Sbjct: 299 FKRPSAAELSDFGCFVVMACGVALLSQTDISLIYHMIRGQGTVKLYVVYNVLEIFDKLCQ 358

Query: 348 SFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILI----------AIT 397
           SFGGDVLQTLFN+AEGLAN   ENMRFWIWRF+SDQALA+AA+NILI          AIT
Sbjct: 359 SFGGDVLQTLFNTAEGLANSAPENMRFWIWRFVSDQALAVAASNILILVHSFILLAQAIT 418

Query: 398 LSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLA 457
           LSTCI+AHNNALLALLVSNNFAEIKSNVFKRFSKDNIHS+VY DS+ERFHISAF+LFVLA
Sbjct: 419 LSTCIIAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSIVYYDSVERFHISAFVLFVLA 478

Query: 458 QNILEAEGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLN 517
           QNILEAEGPWFESFL NALLV++CEM IDIIKHSF+AKFNDIKPIAYSEFLEDLCKQTLN
Sbjct: 479 QNILEAEGPWFESFLSNALLVYICEMAIDIIKHSFIAKFNDIKPIAYSEFLEDLCKQTLN 538

Query: 518 MQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLK 577
           +QT+ GKK+LTF+PLAPACVVIRVLTPV+AA LP  PL WR+F ILLLSAMTYVMLASLK
Sbjct: 539 IQTDGGKKSLTFIPLAPACVVIRVLTPVYAAHLPYNPLRWRVFGILLLSAMTYVMLASLK 598

Query: 578 VMIGMGLQRHATWYVKRCQKRKHHLHFD 605
           +MIG+ L++HATWYV RC+KRKHHLH D
Sbjct: 599 MMIGLALRKHATWYVNRCRKRKHHLHSD 626




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424426|ref|XP_002281514.1| PREDICTED: transmembrane anterior posterior transformation protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508732|ref|XP_003523108.1| PREDICTED: transmembrane anterior posterior transformation protein 1 homolog isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449444072|ref|XP_004139799.1| PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224108227|ref|XP_002314768.1| predicted protein [Populus trichocarpa] gi|222863808|gb|EEF00939.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449521669|ref|XP_004167852.1| PREDICTED: LOW QUALITY PROTEIN: protein POLLEN DEFECTIVE IN GUIDANCE 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518936|ref|XP_003528131.1| PREDICTED: protein TAPT1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|30697603|ref|NP_176963.2| uncharacterized protein [Arabidopsis thaliana] gi|384950714|sp|F4HVJ3.1|POD1_ARATH RecName: Full=Protein POLLEN DEFECTIVE IN GUIDANCE 1 gi|332196608|gb|AEE34729.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17381092|gb|AAL36358.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297838561|ref|XP_002887162.1| hypothetical protein ARALYDRAFT_475928 [Arabidopsis lyrata subsp. lyrata] gi|297333003|gb|EFH63421.1| hypothetical protein ARALYDRAFT_475928 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
TAIR|locus:2200181624 POD1 "POLLEN DEFECTIVE IN GUID 0.714 0.692 0.666 2.6e-158
UNIPROTKB|I3L7J1566 TAPT1 "Uncharacterized protein 0.553 0.591 0.324 3.6e-41
UNIPROTKB|F1MN55547 TAPT1 "Uncharacterized protein 0.671 0.742 0.297 1.2e-40
MGI|MGI:2683537564 Tapt1 "transmembrane anterior 0.553 0.593 0.319 1.6e-40
UNIPROTKB|Q6NXT6567 TAPT1 "Transmembrane anterior 0.552 0.589 0.317 4.2e-40
RGD|1309656563 Tapt1 "transmembrane anterior 0.552 0.593 0.317 4.2e-40
UNIPROTKB|F1NGI0581 TAPT1 "Transmembrane anterior 0.626 0.652 0.292 2.9e-39
UNIPROTKB|Q5ZLG8581 TAPT1 "Transmembrane anterior 0.626 0.652 0.292 2.9e-39
WB|WBGene00009172 712 F26F2.7 [Caenorhabditis elegan 0.613 0.521 0.286 2.6e-37
UNIPROTKB|B4DJJ3456 TAPT1 "cDNA FLJ52307" [Homo sa 0.472 0.627 0.316 3.1e-35
TAIR|locus:2200181 POD1 "POLLEN DEFECTIVE IN GUIDANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1500 (533.1 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 294/441 (66%), Positives = 351/441 (79%)

Query:   173 SEANGSVVTKLETAESLDWKRLMAEDPNYMYPAET-SPLKYFMEEMYTGNSLQSTTTLGD 231
             SE NG+VV +L+T  SLDWK+L+A+DP+++  AET SP+KYFMEE+Y G SL+STTT G+
Sbjct:   185 SEINGNVVRRLDTEASLDWKQLVADDPDFL-SAETRSPMKYFMEEIYGGISLRSTTTPGN 243

Query:   232 EKERQRVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRP 291
             + ER+R+YDTIFRLPWRCE+LID GFFVC +SFLSLLT+MP R+LL        RQF RP
Sbjct:   244 DIERERIYDTIFRLPWRCEVLIDTGFFVCVNSFLSLLTVMPIRVLLIFMDAFKNRQFRRP 303

Query:   292 SAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGG 351
             SA+EL D ACF+VLA    LL  TDISLIYHMIRGQ TIKLYVVYN+LEIFD+LCQSF G
Sbjct:   304 SASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRLCQSFCG 363

Query:   352 DVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATN----ILIA--ITLSTCIVXX 405
             DV   LF+SA+GL+    E +RF  WRF+SD AL MAA+     IL+A  ITLSTCIV  
Sbjct:   364 DVFGALFSSAKGLSISPPEKLRFSTWRFVSDLALTMAASILHSFILLAQAITLSTCIVAH 423

Query:   406 XXXXXXXXXXXXXXEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNILEAEG 465
                           EIKS+VFKRFSKDNIH LVYADSIERFHISAFL+ VLAQNILE+EG
Sbjct:   424 NNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQNILESEG 483

Query:   466 PWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQTENGKK 525
              WF +F++NA  VF CEM+IDIIKHSFLAKFNDIKPIAYSEFL+ LC+QTLN++ E+ K 
Sbjct:   484 AWFGNFIYNATTVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIRPEDRKT 543

Query:   526 NLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQ 585
             NLTFVPLAPACVVIRVLTPV+AA LP +PLPWR+ W+++L  +TY+ML SLKV+IGMGL+
Sbjct:   544 NLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRMLWMVILFVITYIMLTSLKVLIGMGLR 603

Query:   586 RHATWYVKRCQKRKH-HLHFD 605
             +HATWY+ RC++R   HLH D
Sbjct:   604 KHATWYINRCRRRNSSHLHND 624


GO:0005634 "nucleus" evidence=ISM
GO:0005788 "endoplasmic reticulum lumen" evidence=IDA
GO:0009790 "embryo development" evidence=IMP
GO:0010183 "pollen tube guidance" evidence=IMP
GO:0035437 "maintenance of protein localization in endoplasmic reticulum" evidence=IMP
UNIPROTKB|I3L7J1 TAPT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN55 TAPT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2683537 Tapt1 "transmembrane anterior posterior transformation 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NXT6 TAPT1 "Transmembrane anterior posterior transformation protein 1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309656 Tapt1 "transmembrane anterior posterior transformation 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGI0 TAPT1 "Transmembrane anterior posterior transformation protein 1 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLG8 TAPT1 "Transmembrane anterior posterior transformation protein 1 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00009172 F26F2.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|B4DJJ3 TAPT1 "cDNA FLJ52307" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4HVJ3POD1_ARATHNo assigned EC number0.57730.96520.9358yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00030621001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (626 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
pfam05346320 pfam05346, DUF747, Eukaryotic membrane protein fam 2e-94
>gnl|CDD|218565 pfam05346, DUF747, Eukaryotic membrane protein family Back     alignment and domain information
 Score =  292 bits (750), Expect = 2e-94
 Identities = 114/329 (34%), Positives = 181/329 (55%), Gaps = 28/329 (8%)

Query: 287 QFIRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLC 346
           Q  R S A+ CD   F+++  +V LL   D S +YH IRGQ  IKLYV++NVLE+ DKL 
Sbjct: 1   QPRRLSRADKCDLLRFLLILLSVILLSYLDTSRLYHYIRGQSFIKLYVIFNVLEVADKLL 60

Query: 347 QSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATN----ILI--AITLST 400
            S G D+L  LF +          + +  + RFI    L++        +L+  A++L+ 
Sbjct: 61  SSLGQDILDALFWT-----VILIVDFKSILLRFIGYFILSLIYVFLHALVLLYQAVSLNV 115

Query: 401 CIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIERFHISAFLLFVLAQNI 460
            + +++NALL LL+SN FAEIKS+VFK+F K+++  +  AD +ERF +   LL +  +N+
Sbjct: 116 AVNSYSNALLTLLLSNQFAEIKSSVFKKFDKESLFQITCADVVERFQLLLMLLIIALRNL 175

Query: 461 LEA---EGPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCK---- 513
           +E       W  S L   ++V   E+L+D IKH+F+AKFN I+P  Y  FL+ LCK    
Sbjct: 176 VELGVLPNSWTLSVLGPLVVVIGSEVLVDWIKHAFIAKFNKIRPSVYRRFLDVLCKDILQ 235

Query: 514 ------QTLNMQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSA 567
                 QTL   +    + L F PL  A +++R+L P++                ++L  
Sbjct: 236 SRQLNEQTLLSASHKITRRLGFPPLPLAVLILRMLYPIYQMLFS----SLSSISGIVLFL 291

Query: 568 MTYVMLASLKVMIGMGLQRHATWYVKRCQ 596
           ++++ML  LK+++G+ L + A    +R +
Sbjct: 292 LSFLMLLFLKILLGILLLKWALSRNERLK 320


This family is a family of eukaryotic membrane proteins. It was previously annotated as including a putative receptor for human cytomegalovirus gH but this has has since been disputed. Analysis of the mouse Tapt1 protein (transmembrane anterior posterior transformation 1) has shown it to be involved in patterning of the vertebrate axial skeleton. Length = 320

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 605
PF05346332 DUF747: Eukaryotic membrane protein family; InterP 100.0
KOG2490 601 consensus Predicted membrane protein [Function unk 100.0
KOG2490601 consensus Predicted membrane protein [Function unk 99.97
>PF05346 DUF747: Eukaryotic membrane protein family; InterPro: IPR008010 This family is a family of eukaryotic membrane proteins Back     alignment and domain information
Probab=100.00  E-value=5.4e-101  Score=795.22  Aligned_cols=307  Identities=41%  Similarity=0.688  Sum_probs=281.5

Q ss_pred             CCCChhhHhhhhHHHHHHHHHHHhcccchhhhhheecccccchhhhHHHHHHHHHHHHHhhchhHHHHHhhhhcccccCc
Q 047165          289 IRPSAAELCDFACFVVLACAVTLLEGTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGGDVLQTLFNSAEGLANCT  368 (605)
Q Consensus       289 ~r~s~~e~~Dll~~lili~~v~iL~~~D~S~iYH~IRgQs~IKLYVifNmLEV~DKL~sSfGqDiLd~Lf~s~~~l~~~~  368 (605)
                      +|.+++|++|+++++++++++++++++|+|++||+||||++|||||+||||||+||||||||||++|+|+|++++..+.+
T Consensus         3 ~~l~~~~~~Dll~~~ii~~~~~~l~~~D~S~~YH~IRgQs~IKLYvifn~LEv~DkL~sSfGqDild~L~~~~~~~~~~~   82 (332)
T PF05346_consen    3 RRLSRAQICDLLKGFIILICVIILSYVDTSRMYHYIRGQSVIKLYVIFNMLEVADKLCSSFGQDILDSLFWSATLPRRSD   82 (332)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccccCC
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999976432222


Q ss_pred             c--cchhHHHHHHHHHHHHHHHHHH--HHHHhhhheeeccchhHHHHHHHhhhhhhhhcccccccCCCchhhhhhhhhHH
Q 047165          369 E--ENMRFWIWRFISDQALAMAATN--ILIAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNIHSLVYADSIE  444 (605)
Q Consensus       369 ~--~~~r~~~~~fi~~~~l~v~~sl--l~Q~iTLNVAiNS~~naLLtLLiSNnFvEIKsSVFKKfdKenLFQitcsDivE  444 (605)
                      .  ...+ .+.+++...+|.++|++  ++|++|||||+|||+|||||||+||||+|||||||||||||||||++|||++|
T Consensus        83 ~~~~~~~-~~~~~~~a~~yv~~Hs~vll~q~vtLNVAiNS~~naLLtLLiSnnF~EiKssVFKKf~kenLFQi~caDivE  161 (332)
T PF05346_consen   83 SKRNHLR-FILHFILAVIYVFLHSLVLLYQAVTLNVAINSYSNALLTLLISNNFVEIKSSVFKKFDKENLFQITCADIVE  161 (332)
T ss_pred             cchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHHHHHhhcccccchHHHHhhHHHH
Confidence            2  2222 35677888888888874  78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhhc----CCchhhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhh---
Q 047165          445 RFHISAFLLFVLAQNILEAE----GPWFESFLFNALLVFVCEMLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLN---  517 (605)
Q Consensus       445 RFqL~l~L~iI~lrNm~e~~----~~w~~s~l~~~~~Vl~sEvlVDwiKHAFItKFN~Irp~vY~~f~~~L~~D~~~---  517 (605)
                      |||++++|++|++|||.|.+    ++|..++++|+++|+|+||+|||+|||||+|||+|||++|++|+++||+|++.   
T Consensus       162 RFql~l~L~iI~lrn~~~~~~~~~~~~~~~~~~~~~~V~~sEvlVDwiKHafItKFN~I~p~vY~~f~~~L~~D~~~~~~  241 (332)
T PF05346_consen  162 RFQLLLFLFIIALRNMSEYSSNLPNSWFISLLGPVLMVLGSEVLVDWIKHAFITKFNRIRPSVYREFLDILCKDLLSSRQ  241 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCchHHHHhhCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999973    46777899999999999999999999999999999999999999999999983   


Q ss_pred             ------------ccCccccCCCCccccchhhhHHHhHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047165          518 ------------MQTENGKKNLTFVPLAPACVVIRVLTPVFAARLPCTPLPWRLFWILLLSAMTYVMLASLKVMIGMGLQ  585 (605)
Q Consensus       518 ------------~~s~~~~r~LgFiPLp~a~vviRv~~~~~~~~~p~~~~~~~~~~~l~l~~~~f~~Lv~lKlllg~~Ll  585 (605)
                                  ++++...||+||+|+|+||+++|++.|++....++++.+|...+.+++++++|++|+++|+++|++|+
T Consensus       242 ~~~~~~~~~~~~~~s~~~~rRlGf~~lpla~l~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Kill~~~L~  321 (332)
T PF05346_consen  242 SNRLIVSCKAFLDQSHKVSRRLGFPPLPLACLFIRMLYPTYKMLLSSSPLLWSIFSSILLLLLAFLILVLLKILLGILLL  321 (332)
T ss_pred             cccccccccccccchhhHHHHcCCCCcchHHeeeehhHhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        55667889999999999999999999999988887777888888888899999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 047165          586 RHATWYVKRCQ  596 (605)
Q Consensus       586 ~~A~~~v~~~~  596 (605)
                      ++|+++++++|
T Consensus       322 ~~a~~~~~~~k  332 (332)
T PF05346_consen  322 GWACRRVKRMK  332 (332)
T ss_pred             HHHHHHHHhcC
Confidence            99999999876



It was previously annotated as including a putative receptor for human cytomegalovirus gH [] but this has has since been disputed []. Analysis of the mouse Tapt1 protein (transmembrane anterior posterior transformation 1) has shown it to be involved in patterning of the vertebrate axial skeleton.

>KOG2490 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2490 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 84/572 (14%), Positives = 153/572 (26%), Gaps = 157/572 (27%)

Query: 27  KLSFDILSEAASVEDAADSRLFRRSNSL--PTHRHTEVSMPKNRKRKKHKKKKQSSPDFA 84
           ++++  L      E    S + R         +   +V    N  R +   K +     A
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----A 143

Query: 85  VISEDPVSDSNAESAASGV-VFGNRSDANC--QSYVASVCASSTITVAAAENGYNNI--I 139
           ++   P         A  V + G               VC S  +           I  +
Sbjct: 144 LLELRP---------AKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMD----FKIFWL 187

Query: 140 NNGGELRQRNVAGNDEAESREEEISVEKQQQRSSEANGSVVTKLETAESLDWKRLMAEDP 199
           N                     E  +E  Q+   + + +  ++ + + ++   +L     
Sbjct: 188 NLK--------------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHS- 229

Query: 200 NYMYPAETSPLKYFMEEMYTGNSLQSTTTLGDEKERQRVYDT----IFRLPWRCELLI-- 253
                 +    +    + Y  N L     L +      V +      F L   C++L+  
Sbjct: 230 -----IQAELRRLLKSKPYE-NCL---LVLLN------VQNAKAWNAFNL--SCKILLTT 272

Query: 254 -DVGFF----------VCFDSFLSLLTIMPTRILLTLWRLLHTRQFIRPSAAELCDFACF 302
                           +  D     LT    + LL  +  L  R    P   E+      
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPR--EVLTTNPR 328

Query: 303 VVLACAVTLLEGTDISLIYHMIRG---QGTIKLYV----------VYNVLEIFDK----- 344
            +   A ++ +G      +  +        I+  +          +++ L +F       
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 345 ---LC-------QSFGGDVLQTLFNSAEGLANCTEENMRFWIWRFISDQALAMAATNILI 394
              L        +S    V+  L      L     +         I    L +    +  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTI----SIPSIYLELKVK-LEN 441

Query: 395 AITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNI-HSLVYADSIERFHISAF-L 452
              L   IV H N        +         F       I H L   +  ER   + F +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGHHLKNIEHPERM--TLFRM 495

Query: 453 LFV----LAQNILEAEGPWFESFLFNALLV-------FVC------EMLIDIIKHSFL-- 493
           +F+    L Q I      W  S      L        ++C      E L++ I   FL  
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPK 554

Query: 494 -------AKFNDIKPIA----YSEFLEDLCKQ 514
                  +K+ D+  IA         E+  KQ
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00